Query 046969
Match_columns 697
No_of_seqs 441 out of 3082
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:21:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 4E-112 8E-117 976.6 62.9 587 29-646 19-611 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1E-105 2E-110 930.8 65.6 586 33-645 15-615 (617)
3 PLN03211 ABC transporter G-25; 100.0 7E-105 2E-109 924.8 68.7 579 30-642 34-657 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 2E-103 5E-108 974.3 65.6 594 31-644 25-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 2E-102 4E-107 963.8 68.3 582 32-644 864-1467(1470)
6 PLN03140 ABC transporter G fam 100.0 1E-100 3E-105 946.6 63.9 595 31-643 127-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-99 4E-104 939.6 68.3 576 34-645 758-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 4E-100 8E-105 890.8 42.7 578 34-646 786-1386(1391)
9 KOG0065 Pleiotropic drug resis 100.0 6.6E-94 1.4E-98 838.4 45.3 574 54-645 127-732 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.5E-51 5.3E-56 401.4 22.2 215 35-267 2-222 (240)
11 COG1135 AbcC ABC-type metal io 100.0 2.4E-48 5.2E-53 398.1 22.6 219 36-268 2-229 (339)
12 COG1131 CcmA ABC-type multidru 100.0 7.6E-48 1.6E-52 407.8 26.8 221 35-273 4-229 (293)
13 COG1125 OpuBA ABC-type proline 100.0 3.9E-48 8.5E-53 385.8 22.2 216 36-270 2-225 (309)
14 COG1116 TauB ABC-type nitrate/ 100.0 1.5E-47 3.3E-52 385.2 23.2 205 34-257 2-207 (248)
15 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-47 5.3E-52 378.7 23.3 219 33-269 6-234 (263)
16 COG1136 SalX ABC-type antimicr 100.0 7E-47 1.5E-51 379.9 24.5 208 36-259 2-220 (226)
17 COG1120 FepC ABC-type cobalami 100.0 3.4E-47 7.4E-52 389.2 21.4 218 35-269 2-227 (258)
18 COG4555 NatA ABC-type Na+ tran 100.0 2.6E-47 5.6E-52 368.2 17.4 232 36-293 2-237 (245)
19 COG3839 MalK ABC-type sugar tr 100.0 1.2E-46 2.7E-51 398.8 24.1 217 34-269 2-222 (338)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-46 4.4E-51 381.7 24.5 218 34-270 3-227 (254)
21 COG3842 PotA ABC-type spermidi 100.0 8.1E-47 1.8E-51 402.2 21.9 217 34-268 4-224 (352)
22 COG3638 ABC-type phosphate/pho 100.0 2.7E-46 5.7E-51 370.4 19.7 221 34-270 2-237 (258)
23 COG1118 CysA ABC-type sulfate/ 100.0 3.3E-46 7E-51 381.5 20.4 218 35-269 2-226 (345)
24 PRK13537 nodulation ABC transp 100.0 8.2E-45 1.8E-49 387.6 28.5 217 35-270 7-227 (306)
25 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-44 3E-49 392.2 27.6 216 35-269 4-223 (353)
26 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-44 3.3E-49 392.4 27.6 216 35-268 3-222 (356)
27 TIGR02314 ABC_MetN D-methionin 100.0 2.3E-44 5.1E-49 388.3 28.5 218 36-268 2-228 (343)
28 cd03261 ABC_Org_Solvent_Resist 100.0 2.5E-44 5.4E-49 369.7 26.5 215 36-268 1-224 (235)
29 COG2884 FtsE Predicted ATPase 100.0 6.2E-45 1.3E-49 349.0 20.3 211 36-264 2-220 (223)
30 PRK11432 fbpC ferric transport 100.0 3E-44 6.4E-49 389.1 28.0 215 35-268 6-224 (351)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 4E-44 8.6E-49 389.4 27.6 216 35-269 5-227 (362)
32 PRK13536 nodulation factor exp 100.0 8.7E-44 1.9E-48 384.1 29.2 218 34-270 40-261 (340)
33 PRK09452 potA putrescine/sperm 100.0 6.3E-44 1.4E-48 389.3 28.0 217 33-268 12-232 (375)
34 PRK10851 sulfate/thiosulfate t 100.0 8.4E-44 1.8E-48 386.1 28.0 219 35-269 2-225 (353)
35 COG1117 PstB ABC-type phosphat 100.0 1.8E-44 3.9E-49 351.7 19.8 221 33-268 5-235 (253)
36 TIGR01288 nodI ATP-binding ABC 100.0 1.6E-43 3.5E-48 377.4 28.2 218 34-270 3-224 (303)
37 TIGR00960 3a0501s02 Type II (G 100.0 8.8E-44 1.9E-48 361.0 24.8 207 36-259 2-216 (216)
38 cd03293 ABC_NrtD_SsuB_transpor 100.0 2E-43 4.3E-48 359.5 26.6 216 36-266 1-219 (220)
39 cd03265 ABC_DrrA DrrA is the A 100.0 1.5E-43 3.2E-48 360.5 25.7 213 36-267 1-218 (220)
40 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-43 2.9E-48 358.9 25.2 209 36-263 1-213 (213)
41 cd03296 ABC_CysA_sulfate_impor 100.0 2.4E-43 5.2E-48 363.5 27.1 218 35-268 2-224 (239)
42 COG1124 DppF ABC-type dipeptid 100.0 1.2E-43 2.6E-48 354.0 22.9 220 34-270 2-231 (252)
43 cd03219 ABC_Mj1267_LivG_branch 100.0 2.5E-43 5.5E-48 362.3 26.1 217 36-268 1-230 (236)
44 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-43 2.7E-48 362.2 23.6 216 35-269 3-227 (235)
45 PRK11000 maltose/maltodextrin 100.0 2.7E-43 5.9E-48 384.7 27.8 216 35-269 3-222 (369)
46 PRK11607 potG putrescine trans 100.0 3.1E-43 6.7E-48 384.4 28.3 217 34-269 18-238 (377)
47 cd03218 ABC_YhbG The ABC trans 100.0 3E-43 6.5E-48 360.8 26.1 214 36-268 1-220 (232)
48 TIGR01188 drrA daunorubicin re 100.0 2.1E-43 4.5E-48 376.4 25.4 205 54-270 5-213 (302)
49 PRK11153 metN DL-methionine tr 100.0 4.7E-43 1E-47 379.6 28.3 218 36-268 2-228 (343)
50 cd03301 ABC_MalK_N The N-termi 100.0 4.4E-43 9.4E-48 355.0 25.8 209 36-263 1-213 (213)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 6E-43 1.3E-47 372.6 27.8 216 35-270 2-221 (301)
52 cd03258 ABC_MetN_methionine_tr 100.0 4.8E-43 1.1E-47 359.6 26.0 218 36-268 2-228 (233)
53 cd03269 ABC_putative_ATPase Th 100.0 4E-43 8.8E-48 354.6 24.7 209 36-263 1-210 (210)
54 PRK13643 cbiO cobalt transport 100.0 1E-42 2.2E-47 368.6 28.0 233 36-283 2-249 (288)
55 COG1137 YhbG ABC-type (unclass 100.0 1.4E-44 3E-49 348.9 12.3 220 34-270 3-228 (243)
56 cd03263 ABC_subfamily_A The AB 100.0 7.2E-43 1.6E-47 355.1 25.3 214 36-267 1-218 (220)
57 cd03266 ABC_NatA_sodium_export 100.0 8.9E-43 1.9E-47 354.0 25.6 213 36-263 2-218 (218)
58 COG3840 ThiQ ABC-type thiamine 100.0 2E-43 4.3E-48 336.1 19.1 211 36-267 2-216 (231)
59 PRK13637 cbiO cobalt transport 100.0 2.7E-42 5.8E-47 365.3 29.4 221 35-269 2-233 (287)
60 cd03256 ABC_PhnC_transporter A 100.0 1.1E-42 2.3E-47 358.6 25.6 218 36-268 1-232 (241)
61 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8E-43 1.7E-47 354.3 24.2 208 36-259 1-218 (218)
62 cd03224 ABC_TM1139_LivF_branch 100.0 9.4E-43 2E-47 354.6 24.7 212 36-268 1-219 (222)
63 cd03260 ABC_PstB_phosphate_tra 100.0 6.8E-43 1.5E-47 357.1 23.7 214 36-267 1-226 (227)
64 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-42 4.5E-47 356.6 27.2 215 36-268 2-223 (240)
65 TIGR01186 proV glycine betaine 100.0 1.2E-42 2.5E-47 377.2 26.5 204 54-269 5-218 (363)
66 PRK11264 putative amino-acid A 100.0 2.3E-42 5E-47 358.3 27.1 216 35-268 3-231 (250)
67 PRK13634 cbiO cobalt transport 100.0 3.2E-42 7E-47 365.2 28.6 219 35-268 2-233 (290)
68 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.2E-42 4.8E-47 357.0 26.4 215 36-268 1-223 (242)
69 PRK13631 cbiO cobalt transport 100.0 5.4E-42 1.2E-46 367.6 30.3 234 32-280 18-278 (320)
70 PRK13647 cbiO cobalt transport 100.0 4.1E-42 8.8E-47 361.6 28.8 215 35-267 4-224 (274)
71 cd03292 ABC_FtsE_transporter F 100.0 2.1E-42 4.6E-47 350.1 24.8 206 36-259 1-214 (214)
72 cd03234 ABCG_White The White s 100.0 3E-42 6.5E-47 352.4 26.0 221 35-263 3-226 (226)
73 TIGR02673 FtsE cell division A 100.0 2.6E-42 5.7E-47 349.6 25.2 205 36-258 2-214 (214)
74 PRK11831 putative ABC transpor 100.0 3.8E-42 8.2E-47 360.9 27.2 216 35-268 7-231 (269)
75 TIGR02315 ABC_phnC phosphonate 100.0 1.5E-42 3.2E-47 358.1 23.8 217 36-267 2-232 (243)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 1.7E-42 3.6E-47 349.6 23.3 205 36-263 1-208 (208)
77 PRK11629 lolD lipoprotein tran 100.0 6.7E-42 1.5E-46 351.4 27.9 215 35-265 5-229 (233)
78 COG0411 LivG ABC-type branched 100.0 6.1E-43 1.3E-47 349.2 19.3 221 34-270 3-239 (250)
79 PRK10895 lipopolysaccharide AB 100.0 3.3E-42 7E-47 355.4 25.5 216 35-268 3-224 (241)
80 PRK11248 tauB taurine transpor 100.0 6.1E-42 1.3E-46 356.6 27.5 212 36-266 2-216 (255)
81 PRK09536 btuD corrinoid ABC tr 100.0 3.4E-42 7.3E-47 378.0 26.8 218 35-268 3-226 (402)
82 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.8E-42 1.7E-46 351.6 27.8 214 36-269 2-220 (236)
83 PRK13651 cobalt transporter AT 100.0 6.9E-42 1.5E-46 364.7 28.3 219 35-268 2-252 (305)
84 PRK11124 artP arginine transpo 100.0 5.5E-42 1.2E-46 353.9 26.3 214 35-267 2-227 (242)
85 PRK13650 cbiO cobalt transport 100.0 7.2E-42 1.6E-46 360.6 27.6 218 35-269 4-228 (279)
86 cd03264 ABC_drug_resistance_li 100.0 3.5E-42 7.7E-47 348.0 23.9 207 36-263 1-211 (211)
87 PRK15079 oligopeptide ABC tran 100.0 1E-41 2.3E-46 366.9 28.7 227 33-269 6-250 (331)
88 PRK13646 cbiO cobalt transport 100.0 7.9E-42 1.7E-46 361.5 27.1 219 35-268 2-233 (286)
89 TIGR00972 3a0107s01c2 phosphat 100.0 1.1E-41 2.4E-46 352.8 27.5 216 36-268 2-230 (247)
90 PRK10908 cell division protein 100.0 8.8E-42 1.9E-46 347.9 25.9 207 36-260 2-216 (222)
91 PRK11614 livF leucine/isoleuci 100.0 5.9E-42 1.3E-46 352.6 24.9 213 35-268 5-224 (237)
92 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.4E-42 9.6E-47 360.4 24.3 213 37-268 26-248 (269)
93 PRK13641 cbiO cobalt transport 100.0 1.2E-41 2.7E-46 360.2 27.8 220 35-269 2-233 (287)
94 PRK10619 histidine/lysine/argi 100.0 1.3E-41 2.9E-46 354.3 27.3 215 35-268 5-239 (257)
95 cd03226 ABC_cobalt_CbiO_domain 100.0 3.8E-42 8.2E-47 346.4 22.2 201 38-260 2-205 (205)
96 PRK11247 ssuB aliphatic sulfon 100.0 8E-42 1.7E-46 355.9 25.4 208 34-266 11-219 (257)
97 COG4152 ABC-type uncharacteriz 100.0 1.8E-42 3.9E-47 343.2 19.3 220 35-273 2-222 (300)
98 PRK13636 cbiO cobalt transport 100.0 1.6E-41 3.4E-46 358.7 27.7 228 35-280 5-244 (283)
99 TIGR02211 LolD_lipo_ex lipopro 100.0 1.3E-41 2.9E-46 346.1 26.1 209 36-260 2-220 (221)
100 cd03262 ABC_HisP_GlnQ_permease 100.0 7E-42 1.5E-46 346.0 23.9 206 36-259 1-213 (213)
101 PRK11300 livG leucine/isoleuci 100.0 1.3E-41 2.9E-46 353.6 26.6 218 35-268 5-241 (255)
102 PRK13649 cbiO cobalt transport 100.0 2.4E-41 5.1E-46 356.8 28.8 219 35-268 2-232 (280)
103 PRK13638 cbiO cobalt transport 100.0 1.8E-41 3.8E-46 356.2 27.2 214 36-268 2-223 (271)
104 TIGR01978 sufC FeS assembly AT 100.0 1.6E-41 3.4E-46 350.4 26.4 218 36-268 1-232 (243)
105 TIGR03411 urea_trans_UrtD urea 100.0 1.6E-41 3.4E-46 350.4 26.2 216 36-268 3-229 (242)
106 PRK14268 phosphate ABC transpo 100.0 2E-41 4.3E-46 353.3 27.1 217 34-268 11-240 (258)
107 PRK13635 cbiO cobalt transport 100.0 2.5E-41 5.5E-46 356.4 28.2 217 35-269 5-228 (279)
108 PRK13548 hmuV hemin importer A 100.0 1.8E-41 4E-46 353.6 26.8 215 35-268 2-228 (258)
109 TIGR03005 ectoine_ehuA ectoine 100.0 1.9E-41 4.2E-46 352.0 26.7 215 36-268 1-234 (252)
110 cd03225 ABC_cobalt_CbiO_domain 100.0 9.5E-42 2.1E-46 344.7 23.7 204 38-258 2-211 (211)
111 COG0410 LivF ABC-type branched 100.0 7.6E-42 1.6E-46 338.9 22.3 215 35-269 3-225 (237)
112 cd03257 ABC_NikE_OppD_transpor 100.0 2E-41 4.3E-46 346.1 26.0 215 36-263 2-228 (228)
113 PRK10070 glycine betaine trans 100.0 2.3E-41 5E-46 371.1 28.1 202 55-268 41-252 (400)
114 PRK13644 cbiO cobalt transport 100.0 1.6E-41 3.5E-46 357.0 25.5 214 36-268 2-222 (274)
115 PRK09473 oppD oligopeptide tra 100.0 3.9E-41 8.4E-46 362.5 28.9 228 34-269 11-250 (330)
116 cd03235 ABC_Metallic_Cations A 100.0 5.9E-42 1.3E-46 346.9 21.2 209 38-263 2-213 (213)
117 PRK13639 cbiO cobalt transport 100.0 5.7E-41 1.2E-45 353.1 29.1 216 36-269 2-225 (275)
118 PRK13652 cbiO cobalt transport 100.0 5.1E-41 1.1E-45 353.8 28.5 217 35-269 3-226 (277)
119 PRK14273 phosphate ABC transpo 100.0 3.8E-41 8.3E-46 350.2 27.0 218 34-268 6-236 (254)
120 PRK13648 cbiO cobalt transport 100.0 7.2E-41 1.6E-45 351.2 28.9 228 35-280 7-244 (269)
121 TIGR03415 ABC_choXWV_ATP choli 100.0 3.3E-41 7.1E-46 367.6 27.0 205 53-269 35-253 (382)
122 PRK09984 phosphonate/organopho 100.0 3.3E-41 7.1E-46 352.4 26.0 220 35-267 4-239 (262)
123 TIGR02769 nickel_nikE nickel i 100.0 4.5E-41 9.7E-46 352.0 27.0 223 35-268 2-238 (265)
124 PRK11231 fecE iron-dicitrate t 100.0 2.7E-41 5.8E-46 351.6 25.2 218 35-268 2-225 (255)
125 PRK14267 phosphate ABC transpo 100.0 5E-41 1.1E-45 349.0 27.0 219 35-268 4-235 (253)
126 TIGR03740 galliderm_ABC gallid 100.0 4.5E-41 9.7E-46 342.9 25.8 208 36-266 1-209 (223)
127 PRK14247 phosphate ABC transpo 100.0 5.8E-41 1.3E-45 347.9 27.0 219 35-268 3-232 (250)
128 PRK13632 cbiO cobalt transport 100.0 4.7E-41 1E-45 353.0 26.1 217 34-268 6-229 (271)
129 TIGR03410 urea_trans_UrtE urea 100.0 2.7E-41 5.8E-46 346.1 23.6 211 36-268 1-219 (230)
130 PRK11308 dppF dipeptide transp 100.0 9.8E-41 2.1E-45 359.0 29.1 224 35-269 5-243 (327)
131 PRK13640 cbiO cobalt transport 100.0 9.4E-41 2E-45 352.6 28.2 220 35-269 5-231 (282)
132 PRK10584 putative ABC transpor 100.0 8E-41 1.7E-45 342.1 26.7 211 35-261 6-226 (228)
133 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.8E-41 8.2E-46 340.5 24.1 207 36-263 1-211 (211)
134 cd03300 ABC_PotA_N PotA is an 100.0 8.4E-41 1.8E-45 343.1 26.8 214 36-268 1-218 (232)
135 COG0444 DppD ABC-type dipeptid 100.0 3.2E-41 7E-46 350.3 23.8 225 36-268 2-241 (316)
136 PRK14242 phosphate transporter 100.0 9.2E-41 2E-45 347.0 27.4 222 34-268 5-235 (253)
137 PRK11022 dppD dipeptide transp 100.0 1.2E-40 2.6E-45 358.3 28.8 224 35-269 3-242 (326)
138 TIGR03873 F420-0_ABC_ATP propo 100.0 5.9E-41 1.3E-45 349.2 25.6 217 36-268 2-224 (256)
139 PRK13633 cobalt transporter AT 100.0 9.2E-41 2E-45 352.4 27.2 220 35-269 4-232 (280)
140 TIGR00968 3a0106s01 sulfate AB 100.0 8.1E-41 1.8E-45 344.4 26.1 214 36-268 1-218 (237)
141 PRK10575 iron-hydroxamate tran 100.0 6.3E-41 1.4E-45 350.9 25.3 218 35-268 11-235 (265)
142 PRK10253 iron-enterobactin tra 100.0 7.4E-41 1.6E-45 350.3 25.7 220 33-268 5-231 (265)
143 PRK10744 pstB phosphate transp 100.0 1.6E-40 3.5E-45 346.8 27.6 220 32-268 10-242 (260)
144 PRK14256 phosphate ABC transpo 100.0 2E-40 4.3E-45 344.4 28.0 218 35-268 4-234 (252)
145 PRK14274 phosphate ABC transpo 100.0 1.5E-40 3.3E-45 346.8 27.2 218 34-268 11-241 (259)
146 TIGR01184 ntrCD nitrate transp 100.0 5.5E-41 1.2E-45 344.2 23.3 199 58-266 1-200 (230)
147 PRK14241 phosphate transporter 100.0 1.7E-40 3.6E-45 346.2 27.1 218 35-268 4-240 (258)
148 PRK10771 thiQ thiamine transpo 100.0 1.4E-40 3E-45 341.4 25.7 212 36-268 2-217 (232)
149 KOG0058 Peptide exporter, ABC 100.0 1.6E-41 3.5E-46 380.5 20.3 250 4-270 432-691 (716)
150 PRK14245 phosphate ABC transpo 100.0 2.3E-40 5E-45 343.5 27.5 221 34-268 2-232 (250)
151 PRK13645 cbiO cobalt transport 100.0 1.4E-40 3.1E-45 352.4 26.5 219 35-268 6-238 (289)
152 cd03299 ABC_ModC_like Archeal 100.0 2.1E-40 4.5E-45 340.9 26.7 213 36-268 1-217 (235)
153 TIGR01277 thiQ thiamine ABC tr 100.0 1.6E-40 3.5E-45 336.6 25.4 208 36-264 1-212 (213)
154 PRK14250 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 343.9 24.9 211 34-268 2-219 (241)
155 PRK14237 phosphate transporter 100.0 3.3E-40 7.1E-45 345.8 28.5 223 33-268 18-249 (267)
156 cd03267 ABC_NatA_like Similar 100.0 1.2E-40 2.5E-45 343.1 24.6 199 53-263 32-236 (236)
157 PRK14235 phosphate transporter 100.0 2.5E-40 5.4E-45 346.7 27.2 218 35-268 19-249 (267)
158 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-40 3.6E-45 334.0 24.4 195 35-263 3-202 (202)
159 PRK15112 antimicrobial peptide 100.0 2E-40 4.4E-45 347.4 26.0 223 35-268 4-237 (267)
160 PRK14269 phosphate ABC transpo 100.0 3E-40 6.5E-45 342.0 26.9 222 35-268 2-228 (246)
161 PRK13549 xylose transporter AT 100.0 1.7E-40 3.7E-45 378.0 27.1 220 35-268 5-230 (506)
162 TIGR02142 modC_ABC molybdenum 100.0 1.8E-40 4E-45 361.0 26.2 206 40-268 4-219 (354)
163 COG4175 ProV ABC-type proline/ 100.0 3.4E-41 7.5E-46 344.8 19.1 225 34-270 3-254 (386)
164 PRK14239 phosphate transporter 100.0 3.7E-40 7.9E-45 342.2 27.1 217 35-268 5-234 (252)
165 PRK11144 modC molybdate transp 100.0 2.2E-40 4.7E-45 360.0 26.1 206 36-269 2-217 (352)
166 PRK15093 antimicrobial peptide 100.0 4.3E-40 9.4E-45 354.8 28.1 225 35-268 3-246 (330)
167 PRK14270 phosphate ABC transpo 100.0 3.6E-40 7.9E-45 342.3 26.4 217 35-268 4-233 (251)
168 PRK14240 phosphate transporter 100.0 5.4E-40 1.2E-44 340.7 27.6 217 35-268 3-232 (250)
169 PRK14262 phosphate ABC transpo 100.0 4.3E-40 9.3E-45 341.4 26.8 221 35-268 3-232 (250)
170 PRK14272 phosphate ABC transpo 100.0 6.1E-40 1.3E-44 340.6 27.6 218 35-268 4-234 (252)
171 PRK13642 cbiO cobalt transport 100.0 6.6E-40 1.4E-44 345.4 28.1 217 35-268 4-227 (277)
172 PRK10762 D-ribose transporter 100.0 2.5E-40 5.3E-45 376.2 26.8 218 35-268 4-228 (501)
173 PRK11701 phnK phosphonate C-P 100.0 4.8E-40 1E-44 342.8 26.8 216 35-268 6-239 (258)
174 PRK14259 phosphate ABC transpo 100.0 4.8E-40 1E-44 345.0 26.4 217 34-269 12-252 (269)
175 PRK14244 phosphate ABC transpo 100.0 5.9E-40 1.3E-44 340.7 26.6 221 36-268 6-235 (251)
176 COG4559 ABC-type hemin transpo 100.0 1.2E-40 2.6E-45 324.3 19.9 217 36-269 2-229 (259)
177 PRK13547 hmuV hemin importer A 100.0 3.6E-40 7.8E-45 346.2 25.2 220 36-268 2-242 (272)
178 COG2274 SunT ABC-type bacterio 100.0 8.4E-41 1.8E-45 387.4 22.0 220 31-270 467-696 (709)
179 cd03297 ABC_ModC_molybdenum_tr 100.0 4.2E-40 9.2E-45 333.7 24.5 200 40-263 5-214 (214)
180 PRK09700 D-allose transporter 100.0 2.8E-40 6E-45 376.6 26.0 218 35-268 5-232 (510)
181 COG4525 TauB ABC-type taurine 100.0 3.2E-40 7E-45 317.2 22.1 218 36-270 4-224 (259)
182 PRK14236 phosphate transporter 100.0 9.4E-40 2E-44 343.3 27.7 224 32-268 22-254 (272)
183 PRK14248 phosphate ABC transpo 100.0 8.7E-40 1.9E-44 342.8 27.3 217 35-268 21-250 (268)
184 TIGR03608 L_ocin_972_ABC putat 100.0 3.7E-40 7.9E-45 331.8 23.2 196 39-254 2-206 (206)
185 COG4181 Predicted ABC-type tra 100.0 1E-40 2.3E-45 314.4 17.8 211 35-261 6-226 (228)
186 PRK14271 phosphate ABC transpo 100.0 1.2E-39 2.6E-44 343.2 27.9 224 32-268 18-249 (276)
187 COG1123 ATPase components of v 100.0 5.5E-40 1.2E-44 363.5 25.9 227 35-270 5-244 (539)
188 PRK14260 phosphate ABC transpo 100.0 1E-39 2.3E-44 340.5 26.6 217 35-268 7-241 (259)
189 PRK14251 phosphate ABC transpo 100.0 1.3E-39 2.9E-44 338.0 27.1 217 35-268 4-233 (251)
190 PRK14253 phosphate ABC transpo 100.0 9.7E-40 2.1E-44 338.6 26.0 221 35-268 3-231 (249)
191 TIGR02982 heterocyst_DevA ABC 100.0 7.3E-40 1.6E-44 333.4 24.5 209 36-259 2-219 (220)
192 TIGR02770 nickel_nikD nickel i 100.0 5.9E-40 1.3E-44 336.4 24.0 203 57-268 1-213 (230)
193 PRK14261 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 338.1 27.2 221 35-268 6-235 (253)
194 PRK14249 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 337.7 27.1 221 35-268 4-233 (251)
195 CHL00131 ycf16 sulfate ABC tra 100.0 2E-39 4.2E-44 336.8 28.0 219 35-268 7-239 (252)
196 cd03252 ABCC_Hemolysin The ABC 100.0 2.3E-40 5E-45 340.6 20.9 212 36-269 1-224 (237)
197 PRK14255 phosphate ABC transpo 100.0 1.9E-39 4.1E-44 337.0 27.9 218 34-268 4-234 (252)
198 PRK10418 nikD nickel transport 100.0 1.6E-39 3.6E-44 338.1 27.2 215 35-268 4-228 (254)
199 COG4988 CydD ABC-type transpor 100.0 6.1E-40 1.3E-44 361.8 24.8 216 31-269 316-542 (559)
200 PRK15439 autoinducer 2 ABC tra 100.0 1E-39 2.2E-44 371.8 27.3 211 35-268 11-227 (510)
201 PRK14258 phosphate ABC transpo 100.0 2.1E-39 4.7E-44 338.6 27.5 222 35-268 7-243 (261)
202 PRK14254 phosphate ABC transpo 100.0 4E-39 8.6E-44 340.7 28.9 217 33-268 37-267 (285)
203 PRK14275 phosphate ABC transpo 100.0 2.6E-39 5.7E-44 342.2 27.4 219 33-268 37-268 (286)
204 PRK14257 phosphate ABC transpo 100.0 2.5E-39 5.4E-44 348.2 27.6 224 34-269 79-312 (329)
205 TIGR02323 CP_lyasePhnK phospho 100.0 2.8E-39 6.1E-44 335.9 26.6 216 35-268 3-236 (253)
206 PRK14238 phosphate transporter 100.0 2.6E-39 5.6E-44 339.8 26.5 217 35-268 24-253 (271)
207 cd03213 ABCG_EPDR ABCG transpo 100.0 2.2E-39 4.8E-44 323.8 24.4 189 34-263 2-194 (194)
208 cd03232 ABC_PDR_domain2 The pl 100.0 1.8E-39 3.9E-44 323.9 23.7 189 34-263 2-192 (192)
209 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-39 3.8E-44 369.2 26.9 218 36-267 2-227 (500)
210 PRK11174 cysteine/glutathione 100.0 6.6E-40 1.4E-44 379.8 23.3 213 35-269 349-571 (588)
211 PRK10419 nikE nickel transport 100.0 4E-39 8.6E-44 337.8 26.8 223 35-268 3-239 (268)
212 PRK14263 phosphate ABC transpo 100.0 4.9E-39 1.1E-43 335.8 27.3 222 32-268 5-243 (261)
213 PRK15056 manganese/iron transp 100.0 2.9E-39 6.3E-44 339.6 25.6 219 34-268 5-228 (272)
214 cd03251 ABCC_MsbA MsbA is an e 100.0 9.5E-40 2.1E-44 335.3 21.3 211 36-268 1-223 (234)
215 PRK10982 galactose/methyl gala 100.0 1.8E-39 3.9E-44 368.3 25.4 213 39-267 2-220 (491)
216 PRK11288 araG L-arabinose tran 100.0 3.4E-39 7.3E-44 366.9 27.3 215 35-265 4-224 (501)
217 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-39 2.8E-44 383.6 24.8 210 35-269 451-672 (686)
218 PRK14266 phosphate ABC transpo 100.0 5.4E-39 1.2E-43 333.2 26.4 222 34-268 2-232 (250)
219 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.4E-39 7.3E-44 329.6 24.2 202 36-263 23-224 (224)
220 TIGR01257 rim_protein retinal- 100.0 2.2E-39 4.7E-44 404.6 27.5 223 34-273 1936-2162(2272)
221 PRK09580 sufC cysteine desulfu 100.0 8.8E-39 1.9E-43 331.0 27.4 225 36-276 2-240 (248)
222 KOG0057 Mitochondrial Fe/S clu 100.0 8.5E-40 1.9E-44 355.4 20.6 216 35-270 351-574 (591)
223 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.1E-39 2.4E-44 335.8 20.2 214 36-270 1-226 (238)
224 PRK13543 cytochrome c biogenes 100.0 4.5E-39 9.9E-44 326.4 24.4 201 34-256 10-212 (214)
225 PRK11176 lipid transporter ATP 100.0 1.4E-39 3.1E-44 376.6 23.4 214 35-269 341-566 (582)
226 PRK14246 phosphate ABC transpo 100.0 5.2E-39 1.1E-43 334.9 25.3 215 35-268 10-239 (257)
227 PRK14265 phosphate ABC transpo 100.0 8.1E-39 1.7E-43 336.5 26.6 216 34-268 19-256 (274)
228 PRK13546 teichoic acids export 100.0 1.7E-38 3.8E-43 332.0 28.8 217 34-270 3-232 (264)
229 cd03245 ABCC_bacteriocin_expor 100.0 2.3E-39 5.1E-44 329.4 21.3 207 36-263 3-220 (220)
230 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-39 3.9E-44 332.2 20.4 211 35-268 2-224 (229)
231 PRK10261 glutathione transport 100.0 7.3E-39 1.6E-43 372.4 28.0 224 34-268 312-551 (623)
232 PRK13538 cytochrome c biogenes 100.0 7.1E-39 1.5E-43 322.5 23.7 197 36-254 2-202 (204)
233 PRK10261 glutathione transport 100.0 6.5E-39 1.4E-43 372.8 26.9 220 35-268 12-256 (623)
234 PRK03695 vitamin B12-transport 100.0 6.4E-39 1.4E-43 332.6 23.9 198 57-268 11-220 (248)
235 PRK10790 putative multidrug tr 100.0 5.1E-39 1.1E-43 372.6 25.8 211 35-269 340-562 (592)
236 TIGR03269 met_CoM_red_A2 methy 100.0 6.7E-39 1.5E-43 366.1 26.3 218 36-272 1-260 (520)
237 PRK10247 putative ABC transpor 100.0 6.4E-39 1.4E-43 327.7 23.1 207 35-264 7-221 (225)
238 COG1132 MdlB ABC-type multidru 100.0 1.8E-39 3.9E-44 374.6 21.1 217 35-270 328-552 (567)
239 cd03230 ABC_DR_subfamily_A Thi 100.0 6.5E-39 1.4E-43 314.6 21.9 169 36-259 1-173 (173)
240 TIGR01257 rim_protein retinal- 100.0 1.1E-38 2.4E-43 398.3 29.4 222 33-272 926-1151(2272)
241 PRK14243 phosphate transporter 100.0 1.2E-38 2.6E-43 333.5 25.1 215 35-268 10-246 (264)
242 TIGR02324 CP_lyasePhnL phospho 100.0 1.7E-38 3.6E-43 324.1 25.1 208 36-255 2-223 (224)
243 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.2E-39 9.1E-44 380.7 23.8 212 35-270 477-700 (710)
244 cd03231 ABC_CcmA_heme_exporter 100.0 8.9E-39 1.9E-43 321.1 22.6 194 36-254 1-198 (201)
245 PRK14252 phosphate ABC transpo 100.0 2.2E-38 4.9E-43 331.6 26.6 218 34-268 15-247 (265)
246 COG1123 ATPase components of v 100.0 8.1E-39 1.8E-43 354.3 24.1 226 32-268 277-517 (539)
247 PRK15134 microcin C ABC transp 100.0 1.6E-38 3.5E-43 363.7 27.4 223 35-268 5-244 (529)
248 KOG0055 Multidrug/pheromone ex 100.0 3.2E-39 7E-44 380.0 21.9 221 33-270 348-576 (1228)
249 PRK15134 microcin C ABC transp 100.0 9.2E-39 2E-43 365.7 25.2 223 35-268 275-513 (529)
250 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-38 3E-43 363.6 26.0 220 34-268 278-515 (520)
251 COG4598 HisP ABC-type histidin 100.0 1.6E-39 3.4E-44 308.5 15.1 216 35-268 6-239 (256)
252 PRK11160 cysteine/glutathione 100.0 6E-39 1.3E-43 370.4 23.0 214 34-269 337-561 (574)
253 cd03253 ABCC_ATM1_transporter 100.0 6.2E-39 1.3E-43 329.7 20.4 210 36-268 1-222 (236)
254 PRK14264 phosphate ABC transpo 100.0 4.7E-38 1E-42 335.6 27.8 224 34-268 44-287 (305)
255 PRK09544 znuC high-affinity zi 100.0 2.2E-38 4.8E-43 329.1 24.2 201 35-268 4-207 (251)
256 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.1E-38 4.6E-43 318.2 23.0 187 36-273 1-196 (200)
257 TIGR03375 type_I_sec_LssB type 100.0 1.3E-38 2.8E-43 375.6 25.1 214 35-270 463-688 (694)
258 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-38 3.1E-43 334.2 22.6 211 36-270 3-225 (275)
259 PRK13539 cytochrome c biogenes 100.0 2.2E-38 4.9E-43 319.7 22.7 197 35-256 2-200 (207)
260 cd03229 ABC_Class3 This class 100.0 1.9E-38 4.1E-43 312.7 21.4 170 36-258 1-178 (178)
261 cd03244 ABCC_MRP_domain2 Domai 100.0 1.4E-38 3.1E-43 323.9 21.1 206 36-264 3-220 (221)
262 COG4987 CydC ABC-type transpor 100.0 5E-39 1.1E-43 349.3 18.8 214 35-270 336-561 (573)
263 TIGR01193 bacteriocin_ABC ABC- 100.0 1.6E-38 3.4E-43 375.7 24.8 213 35-270 473-697 (708)
264 PRK13549 xylose transporter AT 100.0 1.9E-38 4.2E-43 361.1 24.4 220 35-267 259-491 (506)
265 TIGR00958 3a01208 Conjugate Tr 100.0 8.5E-39 1.8E-43 377.4 21.9 213 35-270 478-702 (711)
266 TIGR01189 ccmA heme ABC export 100.0 3E-38 6.5E-43 316.4 22.3 193 36-253 1-197 (198)
267 TIGR01166 cbiO cobalt transpor 100.0 2.6E-38 5.7E-43 314.7 21.3 176 54-241 4-188 (190)
268 cd03215 ABC_Carb_Monos_II This 100.0 4.3E-38 9.2E-43 311.3 22.2 170 35-259 4-182 (182)
269 TIGR01842 type_I_sec_PrtD type 100.0 2.2E-38 4.9E-43 363.7 23.2 216 35-269 316-541 (544)
270 PRK09700 D-allose transporter 100.0 3E-38 6.4E-43 360.0 24.0 213 35-265 265-493 (510)
271 TIGR03771 anch_rpt_ABC anchore 100.0 2.9E-38 6.3E-43 322.5 21.4 196 63-268 1-199 (223)
272 PRK13545 tagH teichoic acids e 100.0 1.3E-37 2.9E-42 345.9 28.1 214 35-272 21-234 (549)
273 cd03248 ABCC_TAP TAP, the Tran 100.0 1.7E-38 3.7E-43 324.5 18.7 209 35-259 11-226 (226)
274 cd03246 ABCC_Protease_Secretio 100.0 4.7E-38 1E-42 308.5 21.0 168 36-259 1-173 (173)
275 TIGR02203 MsbA_lipidA lipid A 100.0 3.2E-38 7E-43 364.4 23.2 214 35-269 330-555 (571)
276 COG1129 MglA ABC-type sugar tr 100.0 8.1E-38 1.7E-42 344.2 25.1 216 34-265 7-229 (500)
277 COG4148 ModC ABC-type molybdat 100.0 5.4E-39 1.2E-43 323.7 14.0 193 59-269 15-217 (352)
278 PRK10938 putative molybdenum t 100.0 4.3E-38 9.4E-43 357.0 22.8 207 35-268 3-222 (490)
279 PRK13657 cyclic beta-1,2-gluca 100.0 4.4E-38 9.4E-43 364.5 23.2 212 35-269 334-557 (588)
280 cd03247 ABCC_cytochrome_bd The 100.0 5.3E-38 1.1E-42 309.5 20.2 174 36-263 1-178 (178)
281 TIGR02633 xylG D-xylose ABC tr 100.0 7E-38 1.5E-42 356.1 23.9 221 34-266 256-488 (500)
282 COG0396 sufC Cysteine desulfur 100.0 2.6E-37 5.6E-42 305.4 24.0 232 34-279 2-242 (251)
283 cd03288 ABCC_SUR2 The SUR doma 100.0 1E-37 2.2E-42 325.2 22.2 212 35-269 19-242 (257)
284 PRK13540 cytochrome c biogenes 100.0 1.6E-37 3.4E-42 311.8 22.7 192 36-252 2-197 (200)
285 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-37 4.3E-42 312.5 22.9 197 35-265 6-207 (207)
286 COG4604 CeuD ABC-type enteroch 100.0 7.4E-39 1.6E-43 308.4 11.4 218 36-270 2-225 (252)
287 PRK11288 araG L-arabinose tran 100.0 1.3E-37 2.8E-42 353.9 23.7 213 35-267 257-482 (501)
288 COG4618 ArpD ABC-type protease 100.0 5.6E-38 1.2E-42 338.2 19.2 225 30-273 329-563 (580)
289 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-37 2.4E-42 367.6 23.7 214 35-270 455-680 (694)
290 KOG0055 Multidrug/pheromone ex 100.0 1.1E-37 2.3E-42 367.2 23.0 219 35-270 987-1213(1228)
291 TIGR01192 chvA glucan exporter 100.0 2.7E-37 5.8E-42 357.3 25.7 216 35-269 334-557 (585)
292 PRK10789 putative multidrug tr 100.0 2.1E-37 4.6E-42 357.3 24.2 213 35-269 313-537 (569)
293 PRK10535 macrolide transporter 100.0 2.6E-36 5.6E-41 352.4 33.1 217 35-267 4-229 (648)
294 TIGR01187 potA spermidine/putr 100.0 2.9E-37 6.2E-42 332.2 22.9 185 73-269 1-189 (325)
295 cd03250 ABCC_MRP_domain1 Domai 100.0 2.3E-37 5.1E-42 311.3 20.7 196 36-258 1-204 (204)
296 PRK10762 D-ribose transporter 100.0 2.8E-37 6E-42 351.3 23.8 213 35-268 257-482 (501)
297 COG4161 ArtP ABC-type arginine 100.0 1.4E-37 3.1E-42 290.4 17.4 214 35-266 2-226 (242)
298 TIGR02204 MsbA_rel ABC transpo 100.0 2.4E-37 5.2E-42 357.5 23.2 213 35-268 337-561 (576)
299 cd03214 ABC_Iron-Siderophores_ 100.0 1.8E-37 4E-42 306.2 18.0 174 37-263 1-180 (180)
300 PRK15439 autoinducer 2 ABC tra 100.0 4.5E-37 9.7E-42 350.1 22.9 212 35-267 268-489 (510)
301 PTZ00265 multidrug resistance 100.0 1.5E-37 3.2E-42 387.6 20.5 222 35-269 1165-1451(1466)
302 COG4172 ABC-type uncharacteriz 100.0 1.4E-36 3E-41 319.0 23.7 230 28-268 269-514 (534)
303 COG3845 ABC-type uncharacteriz 100.0 1.1E-36 2.5E-41 328.8 22.7 214 35-264 4-223 (501)
304 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-36 2.3E-41 298.3 20.2 166 36-258 1-171 (171)
305 cd03216 ABC_Carb_Monos_I This 100.0 1.9E-36 4.1E-41 294.5 21.5 156 36-261 1-162 (163)
306 cd03290 ABCC_SUR1_N The SUR do 100.0 2.1E-36 4.5E-41 307.5 22.2 199 37-258 2-218 (218)
307 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-36 4.8E-41 294.8 21.1 163 36-257 1-163 (166)
308 PRK15177 Vi polysaccharide exp 100.0 2.9E-36 6.3E-41 305.7 21.9 195 56-274 1-196 (213)
309 PRK13541 cytochrome c biogenes 100.0 3.1E-36 6.8E-41 301.2 21.6 190 36-251 2-192 (195)
310 cd03291 ABCC_CFTR1 The CFTR su 100.0 8E-36 1.7E-40 314.4 25.1 201 34-269 38-246 (282)
311 TIGR02868 CydC thiol reductant 100.0 6.2E-37 1.3E-41 350.7 17.9 185 35-240 334-529 (529)
312 PRK15064 ABC transporter ATP-b 100.0 6E-36 1.3E-40 342.6 25.6 209 36-269 2-241 (530)
313 TIGR02857 CydD thiol reductant 100.0 1.3E-36 2.8E-41 348.0 19.6 198 35-254 320-529 (529)
314 PLN03232 ABC transporter C fam 100.0 2.6E-36 5.6E-41 379.2 23.4 213 35-270 1234-1458(1495)
315 PRK11819 putative ABC transpor 100.0 8E-36 1.7E-40 343.1 25.4 209 34-267 5-247 (556)
316 PLN03130 ABC transporter C fam 100.0 3.8E-36 8.3E-41 378.2 24.5 213 35-270 1237-1461(1622)
317 PRK10982 galactose/methyl gala 100.0 4.4E-36 9.5E-41 340.7 22.6 215 34-266 249-476 (491)
318 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-35 3.1E-40 307.0 23.7 188 57-267 9-204 (246)
319 KOG0056 Heavy metal exporter H 100.0 7.2E-37 1.6E-41 325.8 13.8 218 34-270 536-761 (790)
320 COG4619 ABC-type uncharacteriz 100.0 2.8E-37 6.1E-42 290.4 8.5 192 53-259 14-212 (223)
321 PRK10522 multidrug transporter 100.0 1.1E-35 2.4E-40 341.6 23.5 203 35-262 322-530 (547)
322 PRK10938 putative molybdenum t 100.0 7.8E-36 1.7E-40 338.5 21.9 214 34-263 259-485 (490)
323 PRK15064 ABC transporter ATP-b 100.0 1.4E-35 3.1E-40 339.5 23.8 202 34-268 318-523 (530)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-35 3.9E-40 340.0 24.5 209 35-268 4-246 (552)
325 COG1119 ModF ABC-type molybden 100.0 6.7E-36 1.5E-40 298.7 18.1 218 31-264 27-256 (257)
326 PTZ00243 ABC transporter; Prov 100.0 1.1E-35 2.4E-40 373.5 24.3 213 35-270 1308-1533(1560)
327 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-35 2.6E-40 373.7 24.1 213 35-270 1284-1508(1522)
328 COG4586 ABC-type uncharacteriz 100.0 5E-36 1.1E-40 301.8 16.1 207 55-273 37-249 (325)
329 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.1E-35 6.7E-40 338.3 23.0 209 34-262 336-551 (555)
330 PTZ00265 multidrug resistance 100.0 3.4E-35 7.3E-40 366.5 23.9 212 35-257 382-655 (1466)
331 TIGR01271 CFTR_protein cystic 100.0 5.4E-35 1.2E-39 366.8 25.0 211 35-269 1217-1439(1490)
332 COG4674 Uncharacterized ABC-ty 100.0 1.5E-35 3.3E-40 285.0 14.9 218 34-268 4-233 (249)
333 PRK11819 putative ABC transpor 100.0 1.2E-34 2.6E-39 333.4 24.7 203 34-266 323-529 (556)
334 PRK13409 putative ATPase RIL; 100.0 1.4E-34 3E-39 333.1 23.7 199 33-265 338-537 (590)
335 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-34 6E-39 330.2 25.4 203 34-266 321-527 (552)
336 COG4608 AppF ABC-type oligopep 100.0 1.7E-34 3.7E-39 294.3 20.4 192 34-269 3-198 (268)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-34 2.7E-39 301.4 19.5 189 55-263 14-220 (255)
338 COG4172 ABC-type uncharacteriz 100.0 2.8E-34 6.1E-39 301.6 21.9 227 34-268 5-245 (534)
339 COG1134 TagH ABC-type polysacc 100.0 1.2E-33 2.7E-38 282.9 23.2 222 35-275 3-241 (249)
340 PRK10636 putative ABC transpor 100.0 5.7E-34 1.2E-38 332.0 23.9 201 34-268 311-515 (638)
341 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 7.1E-34 1.5E-38 270.8 19.5 144 36-258 1-144 (144)
342 KOG0059 Lipid exporter ABCA1 a 100.0 3.4E-34 7.4E-39 343.7 19.8 222 34-273 563-790 (885)
343 COG1101 PhnK ABC-type uncharac 100.0 5E-34 1.1E-38 278.7 16.4 216 36-262 2-230 (263)
344 PRK11147 ABC transporter ATPas 100.0 1.9E-33 4E-38 328.0 23.8 203 34-266 318-524 (635)
345 cd03238 ABC_UvrA The excision 100.0 1.7E-33 3.7E-38 276.4 19.8 161 54-263 7-170 (176)
346 cd03222 ABC_RNaseL_inhibitor T 100.0 1.5E-33 3.3E-38 277.1 19.3 154 39-267 4-160 (177)
347 TIGR00954 3a01203 Peroxysomal 100.0 1.3E-33 2.8E-38 330.1 21.3 196 35-255 451-652 (659)
348 PLN03232 ABC transporter C fam 100.0 2.1E-33 4.6E-38 352.9 24.3 206 35-269 614-827 (1495)
349 PLN03130 ABC transporter C fam 100.0 2.2E-33 4.8E-38 353.3 23.7 205 35-269 614-827 (1622)
350 PRK10636 putative ABC transpor 100.0 3.7E-33 8E-38 325.2 23.8 205 36-266 2-232 (638)
351 COG4136 ABC-type uncharacteriz 100.0 9.2E-34 2E-38 262.1 14.7 190 35-240 2-195 (213)
352 PLN03073 ABC transporter F fam 100.0 6.9E-33 1.5E-37 324.6 25.9 204 34-268 507-712 (718)
353 COG5265 ATM1 ABC-type transpor 100.0 4.2E-34 9E-39 302.3 12.4 219 33-270 260-486 (497)
354 PRK11147 ABC transporter ATPas 100.0 1.9E-32 4.2E-37 319.5 24.5 205 35-267 3-240 (635)
355 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-32 2.8E-37 346.3 24.6 209 35-269 636-849 (1522)
356 COG4167 SapF ABC-type antimicr 100.0 2.4E-32 5.3E-37 260.1 17.1 224 35-269 4-238 (267)
357 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6.1E-32 1.3E-36 260.8 20.2 151 38-258 2-157 (157)
358 COG4133 CcmA ABC-type transpor 100.0 1.3E-32 2.9E-37 264.2 15.3 186 36-242 3-192 (209)
359 PRK13409 putative ATPase RIL; 100.0 2.8E-32 6.1E-37 314.1 19.2 180 55-257 87-287 (590)
360 TIGR01271 CFTR_protein cystic 100.0 5.3E-32 1.1E-36 339.9 21.8 193 55-269 439-635 (1490)
361 COG4107 PhnK ABC-type phosphon 100.0 8.9E-32 1.9E-36 254.4 14.5 215 35-270 6-241 (258)
362 COG0488 Uup ATPase components 100.0 6.4E-31 1.4E-35 296.3 20.1 207 34-266 2-236 (530)
363 PTZ00243 ABC transporter; Prov 100.0 1.6E-30 3.5E-35 326.9 21.3 193 54-269 672-869 (1560)
364 cd03270 ABC_UvrA_I The excisio 100.0 9.4E-30 2E-34 260.4 21.0 189 54-263 7-226 (226)
365 PLN03073 ABC transporter F fam 100.0 2E-30 4.3E-35 304.0 18.1 215 32-267 174-428 (718)
366 KOG0054 Multidrug resistance-a 100.0 1.7E-29 3.6E-34 304.6 23.8 208 33-269 516-730 (1381)
367 PF00005 ABC_tran: ABC transpo 100.0 6.8E-30 1.5E-34 240.1 12.6 132 58-209 1-137 (137)
368 cd03271 ABC_UvrA_II The excisi 100.0 7.7E-29 1.7E-33 257.6 19.8 196 54-265 7-261 (261)
369 COG4778 PhnL ABC-type phosphon 100.0 1.8E-29 4E-34 238.1 12.9 212 34-256 3-227 (235)
370 KOG0054 Multidrug resistance-a 100.0 3.8E-29 8.2E-34 301.5 18.9 215 35-270 1138-1362(1381)
371 COG0488 Uup ATPase components 100.0 9E-28 2E-32 270.9 21.2 203 31-267 317-522 (530)
372 COG4138 BtuD ABC-type cobalami 100.0 6E-29 1.3E-33 235.5 7.1 194 58-269 15-220 (248)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 4.7E-28 1E-32 242.7 13.4 164 59-255 14-189 (197)
374 COG1129 MglA ABC-type sugar tr 100.0 4.6E-27 1E-31 259.3 21.9 212 34-265 262-485 (500)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.4E-26 3.1E-31 238.9 13.9 184 53-255 13-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.4E-27 3E-32 242.0 1.4 177 53-255 15-203 (212)
377 COG4178 ABC-type uncharacteriz 99.9 1.2E-25 2.7E-30 252.5 17.0 197 33-255 390-587 (604)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.5E-26 7.5E-31 237.7 9.8 177 68-255 25-242 (251)
379 COG3845 ABC-type uncharacteriz 99.9 1.5E-24 3.3E-29 235.1 21.3 221 32-267 254-489 (501)
380 PRK00635 excinuclease ABC subu 99.9 1.6E-24 3.4E-29 268.0 23.1 137 125-269 759-905 (1809)
381 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.8E-25 3.9E-30 226.7 11.7 178 59-258 18-210 (213)
382 cd03240 ABC_Rad50 The catalyti 99.9 3.1E-25 6.6E-30 223.6 12.8 165 60-257 15-199 (204)
383 PRK00349 uvrA excinuclease ABC 99.9 1.5E-23 3.2E-28 250.0 22.3 125 129-269 792-926 (943)
384 COG4615 PvdE ABC-type sideroph 99.9 2.5E-24 5.3E-29 226.2 9.7 204 34-263 321-530 (546)
385 TIGR00630 uvra excinuclease AB 99.9 1E-22 2.2E-27 242.4 22.2 125 128-268 789-923 (924)
386 KOG0927 Predicted transporter 99.9 7.9E-23 1.7E-27 222.6 13.8 215 32-267 72-306 (614)
387 COG1245 Predicted ATPase, RNas 99.9 3.1E-22 6.8E-27 213.8 17.6 190 33-255 340-530 (591)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.5E-22 3.3E-27 203.1 13.5 168 58-258 12-192 (198)
389 COG4170 SapD ABC-type antimicr 99.9 9.9E-23 2.1E-27 198.3 10.9 230 35-270 3-248 (330)
390 KOG0927 Predicted transporter 99.9 7.7E-23 1.7E-27 222.7 11.0 212 24-266 377-592 (614)
391 KOG0060 Long-chain acyl-CoA tr 99.9 7.5E-22 1.6E-26 216.4 17.6 204 34-256 432-641 (659)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.2E-22 2.6E-27 210.7 9.9 177 70-258 24-236 (247)
393 KOG0062 ATPase component of AB 99.8 6.3E-21 1.4E-25 206.8 12.1 204 30-266 75-281 (582)
394 PF01061 ABC2_membrane: ABC-2 99.8 2E-22 4.3E-27 201.0 -0.3 208 372-584 1-210 (210)
395 KOG0066 eIF2-interacting prote 99.8 2E-20 4.3E-25 198.2 13.2 192 32-256 583-776 (807)
396 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.5E-20 3.3E-25 188.8 11.1 146 58-263 17-172 (200)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 7E-20 1.5E-24 185.8 12.8 169 59-259 15-212 (213)
398 KOG2355 Predicted ABC-type tra 99.8 3.4E-19 7.4E-24 173.4 16.2 210 34-270 12-237 (291)
399 COG1245 Predicted ATPase, RNas 99.8 9.6E-20 2.1E-24 194.9 11.0 172 65-255 97-287 (591)
400 KOG0062 ATPase component of AB 99.8 3.8E-19 8.3E-24 193.1 14.9 198 33-261 360-559 (582)
401 cd03239 ABC_SMC_head The struc 99.8 9.1E-19 2E-23 172.8 15.5 74 181-256 95-172 (178)
402 KOG0064 Peroxisomal long-chain 99.8 2.9E-19 6.4E-24 193.6 12.7 194 34-253 480-680 (728)
403 cd03283 ABC_MutS-like MutS-lik 99.8 4.9E-19 1.1E-23 177.7 10.1 140 54-246 13-153 (199)
404 COG2401 ABC-type ATPase fused 99.8 1.3E-18 2.7E-23 184.3 12.9 186 54-260 395-588 (593)
405 PRK00635 excinuclease ABC subu 99.8 1E-17 2.2E-22 208.2 21.3 128 128-270 1660-1796(1809)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.1E-19 1.3E-23 180.0 7.8 153 54-264 16-175 (222)
407 COG0178 UvrA Excinuclease ATPa 99.8 9.3E-18 2E-22 190.4 16.4 128 128-270 783-919 (935)
408 cd03241 ABC_RecN RecN ATPase i 99.8 1E-17 2.2E-22 176.7 15.0 76 180-258 170-249 (276)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 4.4E-18 9.5E-23 165.3 11.1 75 180-256 77-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 2.6E-17 5.5E-22 196.9 14.8 136 126-269 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 3.8E-17 8.2E-22 195.1 15.5 136 126-269 432-582 (924)
412 cd03243 ABC_MutS_homologs The 99.7 2.6E-17 5.7E-22 165.6 7.1 154 60-266 21-175 (202)
413 cd03242 ABC_RecF RecF is a rec 99.7 6.9E-16 1.5E-20 162.3 15.9 76 179-259 182-269 (270)
414 KOG0066 eIF2-interacting prote 99.7 2E-17 4.4E-22 175.5 3.9 211 33-265 262-494 (807)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.6 3.2E-16 6.9E-21 157.9 8.6 142 54-248 15-157 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 2.4E-15 5.2E-20 153.0 11.6 156 54-267 17-178 (216)
417 TIGR02858 spore_III_AA stage I 99.5 1.6E-14 3.4E-19 151.3 10.2 137 69-267 112-266 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.5 5.4E-14 1.2E-18 150.0 12.8 177 55-255 349-531 (592)
419 smart00534 MUTSac ATPase domai 99.5 2.5E-14 5.4E-19 142.1 4.7 80 179-261 60-141 (185)
420 PRK00064 recF recombination pr 99.4 3.5E-12 7.6E-17 139.6 19.4 77 179-259 272-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.5E-13 3.2E-18 139.8 7.3 88 154-255 121-212 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.8E-12 4E-17 131.6 12.6 128 57-240 18-154 (213)
423 cd00820 PEPCK_HprK Phosphoenol 99.4 1.1E-12 2.4E-17 117.9 6.8 72 55-138 2-78 (107)
424 TIGR01069 mutS2 MutS2 family p 99.4 1.5E-12 3.3E-17 154.3 9.9 130 60-241 313-446 (771)
425 cd03287 ABC_MSH3_euk MutS3 hom 99.3 3E-11 6.4E-16 123.3 14.1 139 54-248 17-160 (222)
426 TIGR01247 drrB daunorubicin re 99.3 6.5E-10 1.4E-14 114.3 23.3 225 380-636 1-233 (236)
427 KOG0063 RNAse L inhibitor, ABC 99.3 5.4E-12 1.2E-16 134.9 7.5 171 66-255 98-287 (592)
428 PTZ00132 GTP-binding nuclear p 99.3 5.8E-12 1.3E-16 127.7 6.9 45 184-228 156-205 (215)
429 TIGR00634 recN DNA repair prot 99.3 1.2E-11 2.5E-16 143.1 9.3 77 179-258 439-519 (563)
430 cd01128 rho_factor Transcripti 99.2 2E-11 4.3E-16 126.6 9.6 77 177-259 126-211 (249)
431 PRK10869 recombination and rep 99.2 2.8E-11 6.1E-16 139.1 10.1 76 179-257 429-508 (553)
432 PRK00409 recombination and DNA 99.2 1.9E-11 4.1E-16 145.3 8.7 81 179-262 389-470 (782)
433 PRK08533 flagellar accessory p 99.2 8.7E-11 1.9E-15 120.8 12.3 150 64-255 20-184 (230)
434 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 6.6E-10 1.4E-14 112.1 17.4 151 461-643 57-207 (208)
435 TIGR00618 sbcc exonuclease Sbc 99.2 4.8E-11 1E-15 147.4 10.9 79 177-256 947-1035(1042)
436 PRK07721 fliI flagellum-specif 99.2 5.2E-10 1.1E-14 124.6 17.6 172 54-266 145-339 (438)
437 PF13304 AAA_21: AAA domain; P 99.2 6.2E-11 1.3E-15 120.0 9.4 64 178-241 234-300 (303)
438 PHA02562 46 endonuclease subun 99.2 3.2E-11 7E-16 139.6 7.8 79 177-259 465-555 (562)
439 COG0178 UvrA Excinuclease ATPa 99.1 3.5E-10 7.6E-15 129.6 14.0 137 126-270 426-577 (935)
440 TIGR01291 nodJ ABC-2 type tran 99.1 1.2E-08 2.6E-13 106.4 24.1 232 374-640 7-248 (253)
441 cd03286 ABC_MSH6_euk MutS6 hom 99.1 4.6E-10 9.9E-15 114.3 12.7 134 54-240 16-153 (218)
442 PRK13695 putative NTPase; Prov 99.1 8.3E-11 1.8E-15 115.5 7.1 78 179-262 77-156 (174)
443 cd01124 KaiC KaiC is a circadi 99.1 4E-10 8.7E-15 111.2 12.0 146 70-255 1-163 (187)
444 TIGR00025 Mtu_efflux ABC trans 99.1 1.6E-08 3.4E-13 103.9 24.0 220 386-638 2-227 (232)
445 TIGR02788 VirB11 P-type DNA tr 99.1 8.8E-10 1.9E-14 118.2 11.6 141 61-269 137-280 (308)
446 PRK03918 chromosome segregatio 99.0 7.1E-10 1.5E-14 135.1 9.5 77 177-255 785-867 (880)
447 COG3910 Predicted ATPase [Gene 99.0 3.5E-09 7.5E-14 102.9 11.6 64 177-241 126-189 (233)
448 PRK13830 conjugal transfer pro 99.0 9.5E-09 2.1E-13 123.6 18.1 69 196-265 650-728 (818)
449 PRK06793 fliI flagellum-specif 99.0 1.9E-09 4.2E-14 119.3 11.1 156 55-265 144-306 (432)
450 TIGR03861 phenyl_ABC_PedC alco 99.0 6.2E-08 1.4E-12 100.8 21.4 202 372-580 2-218 (253)
451 PRK10246 exonuclease subunit S 99.0 1.7E-09 3.6E-14 133.4 10.6 78 177-255 946-1031(1047)
452 cd01120 RecA-like_NTPases RecA 98.9 5.3E-09 1.1E-13 99.7 11.1 62 181-242 68-139 (165)
453 TIGR00606 rad50 rad50. This fa 98.9 2.7E-09 5.8E-14 134.7 11.4 76 170-248 1191-1277(1311)
454 PRK06067 flagellar accessory p 98.9 1.2E-08 2.6E-13 105.0 13.2 161 57-255 13-186 (234)
455 PRK01156 chromosome segregatio 98.9 4.2E-09 9.2E-14 128.6 10.3 77 177-255 798-883 (895)
456 cd01125 repA Hexameric Replica 98.9 1.1E-08 2.4E-13 105.7 11.5 136 68-241 1-160 (239)
457 cd01131 PilT Pilus retraction 98.9 1.4E-08 3E-13 102.1 11.7 57 190-255 66-122 (198)
458 PRK15066 inner membrane transp 98.9 2E-06 4.3E-11 89.9 27.9 240 371-644 7-254 (257)
459 TIGR02168 SMC_prok_B chromosom 98.8 7.9E-09 1.7E-13 129.2 7.9 76 177-255 1086-1165(1179)
460 PRK06995 flhF flagellar biosyn 98.8 2.8E-08 6E-13 111.7 10.6 152 56-238 244-400 (484)
461 TIGR03238 dnd_assoc_3 dnd syst 98.7 1E-08 2.3E-13 113.5 4.8 51 55-110 19-70 (504)
462 PRK02224 chromosome segregatio 98.7 3.6E-08 7.7E-13 120.3 9.1 77 178-256 779-868 (880)
463 TIGR02169 SMC_prok_A chromosom 98.7 3E-08 6.5E-13 124.1 8.2 75 178-255 1072-1150(1164)
464 smart00382 AAA ATPases associa 98.6 9.1E-07 2E-11 80.9 14.4 118 67-238 1-124 (148)
465 TIGR01420 pilT_fam pilus retra 98.6 3.2E-07 6.8E-12 100.0 11.7 57 190-255 187-243 (343)
466 PRK07196 fliI flagellum-specif 98.6 6.1E-08 1.3E-12 107.6 5.9 170 54-262 142-333 (434)
467 TIGR02655 circ_KaiC circadian 98.5 3.3E-08 7.1E-13 112.5 2.3 165 57-255 9-190 (484)
468 PRK13891 conjugal transfer pro 98.5 1.8E-06 3.8E-11 104.7 16.5 70 191-261 680-752 (852)
469 COG0842 ABC-type multidrug tra 98.4 2.3E-05 5.1E-10 81.2 21.3 153 464-644 131-284 (286)
470 cd01130 VirB11-like_ATPase Typ 98.4 5.8E-07 1.2E-11 89.4 8.6 81 57-140 14-98 (186)
471 TIGR03881 KaiC_arch_4 KaiC dom 98.4 5E-08 1.1E-12 99.9 1.0 33 57-89 8-41 (229)
472 COG0419 SbcC ATPase involved i 98.4 4.7E-07 1E-11 110.8 9.5 77 177-255 812-896 (908)
473 TIGR00611 recf recF protein. A 98.4 3.2E-07 7E-12 100.7 7.2 59 180-241 275-342 (365)
474 TIGR01026 fliI_yscN ATPase Fli 98.4 3.2E-06 6.9E-11 94.6 14.5 172 54-266 150-344 (440)
475 PRK14079 recF recombination pr 98.4 4.4E-07 9.5E-12 99.1 7.6 76 180-263 263-347 (349)
476 cd02023 UMPK Uridine monophosp 98.4 3.5E-07 7.5E-12 91.6 5.2 112 70-213 1-113 (198)
477 PRK05399 DNA mismatch repair p 98.3 1.5E-06 3.3E-11 105.0 8.5 138 55-250 595-738 (854)
478 PLN03210 Resistant to P. syrin 98.3 4.6E-06 9.9E-11 104.6 12.8 164 59-277 198-365 (1153)
479 PRK06002 fliI flagellum-specif 98.2 2.9E-06 6.2E-11 94.5 9.1 82 33-124 137-230 (450)
480 PRK13898 type IV secretion sys 98.2 4.9E-05 1.1E-09 92.0 18.7 48 194-241 638-686 (800)
481 cd01122 GP4d_helicase GP4d_hel 98.2 4.3E-05 9.2E-10 80.3 15.9 156 54-240 16-191 (271)
482 PRK09825 idnK D-gluconate kina 98.1 1.1E-06 2.4E-11 86.7 2.8 64 67-137 2-69 (176)
483 TIGR02680 conserved hypothetic 98.1 3E-06 6.5E-11 107.1 7.3 60 178-240 1245-1316(1353)
484 cd00009 AAA The AAA+ (ATPases 98.1 3.6E-05 7.9E-10 71.0 11.1 55 186-241 72-131 (151)
485 TIGR01248 drrC daunorubicin re 98.0 0.00011 2.5E-09 70.7 14.4 129 447-580 16-146 (152)
486 PRK13873 conjugal transfer ATP 98.0 0.00014 3E-09 88.1 18.3 46 196-241 633-679 (811)
487 PRK01889 GTPase RsgA; Reviewed 98.0 8.6E-06 1.9E-10 89.2 7.2 105 58-171 185-291 (356)
488 TIGR03518 ABC_perm_GldF glidin 98.0 0.0015 3.3E-08 67.7 23.3 187 375-576 2-207 (240)
489 PF13555 AAA_29: P-loop contai 98.0 6.7E-06 1.5E-10 66.6 4.4 36 59-94 13-49 (62)
490 PF13558 SbcCD_C: Putative exo 98.0 1.5E-05 3.1E-10 69.9 6.4 48 178-225 30-90 (90)
491 cd01876 YihA_EngB The YihA (En 97.9 1.7E-05 3.6E-10 75.5 6.7 44 179-226 121-169 (170)
492 TIGR02524 dot_icm_DotB Dot/Icm 97.9 4.6E-05 1E-09 83.5 10.7 124 66-254 132-259 (358)
493 TIGR00235 udk uridine kinase. 97.9 1E-05 2.2E-10 81.8 4.3 28 66-93 4-31 (207)
494 PF09818 ABC_ATPase: Predicted 97.9 0.00025 5.4E-09 78.1 15.1 80 179-259 321-416 (448)
495 TIGR02903 spore_lon_C ATP-depe 97.9 3.4E-05 7.3E-10 90.4 8.9 111 67-225 174-291 (615)
496 PRK00454 engB GTP-binding prot 97.9 0.00022 4.9E-09 70.5 13.7 67 155-229 126-195 (196)
497 TIGR00416 sms DNA repair prote 97.9 2.2E-05 4.8E-10 88.6 7.0 62 197-258 169-247 (454)
498 PRK08149 ATP synthase SpaL; Va 97.9 1.9E-05 4E-10 87.9 6.2 68 55-123 139-215 (428)
499 PRK13764 ATPase; Provisional 97.8 0.0001 2.2E-09 85.3 12.0 64 195-266 321-401 (602)
500 PRK06315 type III secretion sy 97.8 4.4E-05 9.5E-10 85.3 8.6 108 55-166 152-277 (442)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-112 Score=976.59 Aligned_cols=587 Identities=41% Similarity=0.685 Sum_probs=514.7
Q ss_pred ccCccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 046969 29 AAARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK 108 (697)
Q Consensus 29 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 108 (697)
....++.++|+|++++.+.... ..|++|+||||+++|||++|||||||||||||||+|+|+.+.+..++|+|++||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~--~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~ 96 (613)
T KOG0061|consen 19 PYLEPVKLSFRNLTLSSKEKSK--KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP 96 (613)
T ss_pred cccccceeEEEEEEEEecCCCC--ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc
Confidence 3456788999999999875322 46899999999999999999999999999999999999998766789999999976
Q ss_pred cC--cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 109 TR--VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 109 ~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.. ..++.+|||+|||.++|+|||+|+|.|+|++|+|...++++++++|+++++++||++|+||+||+...||+|||||
T Consensus 97 ~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 97 RDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred CchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchh
Confidence 53 3467899999999999999999999999999999988999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|||+||.+|++||+||||||||||||+.+|.++++.|+++|++|+|||+|+|||+++++++||++++|++|+++|+|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCCCCchhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHHHhcHHHHHHH
Q 046969 267 LAVEFFAEAGFPCPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESYRRSKYAKRAR 346 (697)
Q Consensus 267 ~~~~~f~~~g~~~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~ 346 (697)
++.+||++.|++||++.||+||++|+++.+ +..... ..........+.++..+...+..
T Consensus 257 ~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 315 (613)
T KOG0061|consen 257 ELLEFFSSLGFPCPELENPADFLLDLLSVD-SGTREL--------------------EEAVRIAKLINKFSQTDNLKKTL 315 (613)
T ss_pred HHHHHHHhCCCCCCCcCChHHHHHHHHccC-CCchhH--------------------HhHHHHHHHhhhccccchhhhhH
Confidence 999999999999999999999999999864 110000 01111122222222111111110
Q ss_pred HHHH-HhhhhcccchhhccCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 046969 347 ARIQ-ELSAMEGLEIEIKTISKASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVGTGYTAILARIS 425 (697)
Q Consensus 347 ~~~~-~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i~~r~~ 425 (697)
.... ..... ........++||.|+++|++|.+++++|||.+.+.|+++++++|+++|++||+++++..++++|.|
T Consensus 316 ~~~~~~~~~~----~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g 391 (613)
T KOG0061|consen 316 EALEKSLSTS----KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLG 391 (613)
T ss_pred HHHhhhcccc----cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Confidence 0000 00000 000111268999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHH
Q 046969 426 CGAFITGFMTFMSIG-GFPSFIEEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAF 504 (697)
Q Consensus 426 ~~~f~~~~~~~~s~~-~~p~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~ 504 (697)
++||+..++.+.++. +++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|+++++.+|++
T Consensus 392 ~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~ 471 (613)
T KOG0061|consen 392 LFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLY 471 (613)
T ss_pred HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 999999999888765 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhh
Q 046969 505 FTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDF 584 (697)
Q Consensus 505 f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef 584 (697)
|++++++..++++++++++++++||..+|+++++++++.|++|+||+++.++||++ |+| ++|+||++|++|+++.|||
T Consensus 472 ~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~-~~w-~~~~S~~ry~~e~l~~n~~ 549 (613)
T KOG0061|consen 472 FLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKY-FRW-ISYLSYFRYAFEALLINQF 549 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHH-HHH-HHHHhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999975 788 9999999999999999999
Q ss_pred CCCccCCCCC--CCCccCHHHHHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046969 585 LGVEFDPMFP--GEPKLKGEDIIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILKFKERAC 646 (697)
Q Consensus 585 ~g~~~~~~~~--~~~~~~G~~vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 646 (697)
.+....|... ..+..+|++++.+ .+++.+ ++|.|+.++++++++||+++|++|+++.+..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 550 SGGSSRCFLSGNLCCESTGEDVLKQ-LGFEDS-SFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred hccccccccCcCCcccccHHHHHHh-cCCccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8733334322 3567899999997 577644 4899999999999999999999999988753
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.8e-106 Score=930.83 Aligned_cols=586 Identities=31% Similarity=0.543 Sum_probs=511.7
Q ss_pred cceEEEEEEEEEeccc--cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 046969 33 GTFLVWENLFAVLPNF--GNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~--~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 110 (697)
+..++|+++. +++.. .+.+.++++|+|+|++++|||++||+|||||||||||++|+|+.+++...+|+|.+||.+..
T Consensus 15 ~~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~ 93 (617)
T TIGR00955 15 AQDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93 (617)
T ss_pred cccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 3456666665 44321 12223678999999999999999999999999999999999998775446899999999864
Q ss_pred --cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCcc-CCCCCHHHHH
Q 046969 111 --VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWH-LRGISGGEKK 187 (697)
Q Consensus 111 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~-~~~LSGGerq 187 (697)
..++.+|||+|+|.+++.+||+|||.|++.++.|...++++++++++++++.+||.+++||.+|+.. .++|||||||
T Consensus 94 ~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk 173 (617)
T TIGR00955 94 AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK 173 (617)
T ss_pred HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh
Confidence 2346799999999999999999999999999988777788888899999999999999999999753 6899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
||+||+||+++|+++||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|++++
T Consensus 174 Rvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~ 253 (617)
T TIGR00955 174 RLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253 (617)
T ss_pred HHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence 99999999999999999999999999999999999999998899999999999889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCchhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHHHhcHHHHHHHH
Q 046969 268 AVEFFAEAGFPCPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESYRRSKYAKRARA 347 (697)
Q Consensus 268 ~~~~f~~~g~~~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 347 (697)
+.+||+++|++||++.||+||++++++.+.+.. ..+.+..+.+.+.|++++.+++..+
T Consensus 254 ~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~s~~~~~~~~ 311 (617)
T TIGR00955 254 AVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE----------------------NESRERIEKICDSFAVSDIGRDMLV 311 (617)
T ss_pred HHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc----------------------cchHHHHHHHHHHHhcchhhHHHHH
Confidence 999999999999999999999999987542210 0012234567788888877666554
Q ss_pred HHHHhhhhc-c----cchhhccCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 046969 348 RIQELSAME-G----LEIEIKTISKASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVGTGYTAILA 422 (697)
Q Consensus 348 ~~~~~~~~~-~----~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i~~ 422 (697)
.+......+ + ........+..+|++|+.+|++|++++.+|||.++++|+++++++|+++|++||++++++.++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~ 391 (617)
T TIGR00955 312 NTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN 391 (617)
T ss_pred HhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 443221111 1 01111234568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHH
Q 046969 423 RISCGAFITGFMTFMSI-GGFPSFIEEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSY 501 (697)
Q Consensus 423 r~~~~~f~~~~~~~~s~-~~~p~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~ 501 (697)
|.|++||+..+++|.++ ..++.|++||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999988888764 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHH
Q 046969 502 FAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYK 581 (697)
Q Consensus 502 f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~ 581 (697)
|++|+++++++.++++++++++++++|++.+|..++++++.++++|+||++++++||.| |+| ++|+||++||+|+++.
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~-~~W-~~~isp~~ya~~al~~ 549 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVY-FKW-LSYLSWFRYGNEGLLI 549 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHH-HHH-HHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 999 9999999999999999
Q ss_pred hhhCCCcc-CCCC---CCCCccCHHHHHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046969 582 NDFLGVEF-DPMF---PGEPKLKGEDIIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILKFKERA 645 (697)
Q Consensus 582 nef~g~~~-~~~~---~~~~~~~G~~vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 645 (697)
|||.|.++ +|.. .+.|..+|+++|+. +|++.++ .|.|+++++++.++|++++|++||++.+.
T Consensus 550 nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 550 NQWSDVDNIECTSANTTGPCPSSGEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred HHhCCCccccccCcCcCCCCCcChHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999876 4432 12245689999985 7987654 79999999999999999999999987653
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.3e-105 Score=924.84 Aligned_cols=579 Identities=29% Similarity=0.510 Sum_probs=485.4
Q ss_pred cCccceEEEEEEEEEecccc----------------------ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 046969 30 AARGTFLVWENLFAVLPNFG----------------------NNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDS 87 (697)
Q Consensus 30 ~~~~~~l~~~~l~~~~~~~~----------------------~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~ 87 (697)
...++.++|.|++|+++..+ +..+++++|+|+|+++++||++||+||||||||||||+
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34478999999999986321 01135779999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeEEEECCEecCc-CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 046969 88 LAGRLSRHVIMTGNVLFNGKKTRV-DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166 (697)
Q Consensus 88 LaG~~~~~~~~~G~I~~nG~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 166 (697)
|+|+.+++ ..+|+|.+||++... .++.++||+|++.+++.+||+||+.|++.++++...++++++++++++++.+||+
T Consensus 114 LaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998763 258999999998632 2356999999999999999999999998887765566777778899999999999
Q ss_pred cccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH
Q 046969 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA 246 (697)
Q Consensus 167 ~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~ 246 (697)
+++||++|+...++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999998899999999999878999
Q ss_pred hccceeeecCCeeeeecChhhHHHHHHhcCCCCCCCCCchhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHH
Q 046969 247 LFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATA 326 (697)
Q Consensus 247 l~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (697)
+||++++|++|+++|.|+++++.+||+++|++||.+.|||||++|+++.+.+.. +. . . .+ ..
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~-----~~-~-----~-~~------~~ 334 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD-----GV-S-----E-RE------KP 334 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC-----Cc-c-----c-cc------cc
Confidence 999999999999999999999999999999999999999999999987643210 00 0 0 00 00
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHH--hhh--hc------ccchh-hccCCCCCHHHHHHHHHHHHHHHHhcChHHHHHH
Q 046969 327 EIKARLVESYRRSKYAKRARARIQE--LSA--ME------GLEIE-IKTISKASWWKQLSTLTRRSLVNMSRDVGYYWAR 395 (697)
Q Consensus 327 ~~~~~l~~~~~~s~~~~~~~~~~~~--~~~--~~------~~~~~-~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r 395 (697)
...+.+.+.|+++. .++..+.+.. ... .. ..... ......++|++|+.+|++|++++ +||+.+.++|
T Consensus 335 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r 412 (659)
T PLN03211 335 NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLR 412 (659)
T ss_pred hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHH
Confidence 11233455564321 1111111110 000 00 00000 01124478999999999999998 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046969 396 IAIYLVVSICVGTIFFDVGTGYTAILARISCGAFITGFMTFM-SIGGFPSFIEEMKIFYHEKLNGYYGVTVYILSNFLSS 474 (697)
Q Consensus 396 ~~~~i~~~l~iG~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~-s~~~~p~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~ 474 (697)
+++++++|+++|++||+++ ..++++|.|++||++.++.+. ++..++.|++||+||+||+.+|+|++++|++|++++|
T Consensus 413 ~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~e 490 (659)
T PLN03211 413 VFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGD 490 (659)
T ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999985 678999999999998886654 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCC
Q 046969 475 FPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLL 554 (697)
Q Consensus 475 lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~ 554 (697)
+|+.++.+++|++|+|||+||++++++|++|+++++++.++++++|+++++++||+.+|+.+++++++++++|+||+++
T Consensus 491 lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~- 569 (659)
T PLN03211 491 LPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH- 569 (659)
T ss_pred HHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCccccccccccccHHHHHHHHHHHhhhCCCc-----cCCCCCC-----CCccCHHHHHhhhcCCccCchhhHHHHHH
Q 046969 555 PDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVE-----FDPMFPG-----EPKLKGEDIIKNTFGISIDRSKWWDLSAI 624 (697)
Q Consensus 555 ~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~-----~~~~~~~-----~~~~~G~~vL~~~~g~~~~~~~w~~~~il 624 (697)
+||.| |+| ++|+||++|++|+++.|||.+.. ++|..+. .|...++.++. +.+.|.|+++|
T Consensus 570 -~ip~~-~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~~~~l 639 (659)
T PLN03211 570 -KLPSC-MAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATSVSVL 639 (659)
T ss_pred -hchHH-HHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHHHHHH
Confidence 79975 999 99999999999999999997643 2443221 12233443332 23589999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046969 625 VVILISYRLLFFIILKFK 642 (697)
Q Consensus 625 ~~~~~~~~~l~~~~L~~~ 642 (697)
++++++||+++|++|++.
T Consensus 640 ~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 640 IFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999754
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.4e-103 Score=974.25 Aligned_cols=594 Identities=23% Similarity=0.388 Sum_probs=514.8
Q ss_pred CccceEEEEEEEEEeccc-------------------------cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHH
Q 046969 31 ARGTFLVWENLFAVLPNF-------------------------GNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLL 85 (697)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~-------------------------~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL 85 (697)
.+.+.+.|+||+++.... +++.++++||+|+|+.+++||+++|+|||||||||||
T Consensus 25 ~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL 104 (1394)
T TIGR00956 25 PYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLL 104 (1394)
T ss_pred CCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 457889999999886210 0112346799999999999999999999999999999
Q ss_pred HHHHcCCCCC-CCceeEEEECCEecC----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHH-
Q 046969 86 DSLAGRLSRH-VIMTGNVLFNGKKTR----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS----SMSKEDIKSH- 155 (697)
Q Consensus 86 ~~LaG~~~~~-~~~~G~I~~nG~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~----~~~~~~~~~~- 155 (697)
|+|+|+.++. ...+|+|.+||++.. ..++.++||+|+|.+++.+||+|||.|+++++.|. ..++++..++
T Consensus 105 k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 184 (1394)
T TIGR00956 105 KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHI 184 (1394)
T ss_pred HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 9999997421 125999999999763 12456999999999999999999999999887653 2345554434
Q ss_pred HHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 046969 156 VDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVI 234 (697)
Q Consensus 156 v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi 234 (697)
++++++.+||++++|++||+..+++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|++++++ |+|||
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999975 99999
Q ss_pred EEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHHhcCCCCCCCCCchhhHHHHhccCcchhhhhhccccccccCC
Q 046969 235 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVP 314 (697)
Q Consensus 235 ~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (697)
+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.|||||++++++.+.+......+ ...
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e-----~~~- 338 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYE-----KKV- 338 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcccccc-----ccC-
Confidence 99999988999999999999999999999999999999999999999999999999998754322111000 000
Q ss_pred CCCCcccchhHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhc-------------cc----chhhccCCCCCHHHHHHHH
Q 046969 315 SSSDPFMNMATAEIKARLVESYRRSKYAKRARARIQELSAME-------------GL----EIEIKTISKASWWKQLSTL 377 (697)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~s~~~Q~~~L 377 (697)
+ ...+++.+.|++|+.+++..+.+++..... .. .......+..|+++|+++|
T Consensus 339 ----~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l 407 (1394)
T TIGR00956 339 ----P-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYC 407 (1394)
T ss_pred ----C-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHH
Confidence 0 012458888999988776666554322110 00 0011123568999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 046969 378 TRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVGTGYTAILARISCGAFITGFMTFMSIGGFPSFIEEMKIFYHEKL 457 (697)
Q Consensus 378 ~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~~~~p~~~~er~v~~rE~~ 457 (697)
++|++++++|||.++++|+++++++|+++|++||+++++++++++|.|++||+..+++++++..++.++.||+||+||+.
T Consensus 408 ~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~ 487 (1394)
T TIGR00956 408 LARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRK 487 (1394)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 046969 458 NGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVG 537 (697)
Q Consensus 458 ~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~ 537 (697)
+|+|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||+.+|+.++
T Consensus 488 ~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~ 567 (1394)
T TIGR00956 488 YALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPA 567 (1394)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCC--C---------------------
Q 046969 538 AGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMF--P--------------------- 594 (697)
Q Consensus 538 ~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~--~--------------------- 594 (697)
+++++++++|+||+++.++||.| |+| ++|+||++||+||++.|||.|.+++|.. |
T Consensus 568 ~~~~~~~~lf~Gf~i~~~~mp~~-~~W-~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~ 645 (1394)
T TIGR00956 568 AILLLALSIYTGFAIPRPSMLGW-SKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAE 645 (1394)
T ss_pred HHHHHHHHHHcccccChhhccHH-HHH-HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCc
Confidence 99999999999999999999985 999 9999999999999999999998887731 1
Q ss_pred -CCCccCHHHHHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046969 595 -GEPKLKGEDIIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILKFKER 644 (697)
Q Consensus 595 -~~~~~~G~~vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 644 (697)
|.+.++|+++|+..|+++.+| .|+|++++++++++|++++++++.+...
T Consensus 646 ~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 646 PGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 123569999999778887654 9999999999999999999999988763
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-102 Score=963.82 Aligned_cols=582 Identities=27% Similarity=0.451 Sum_probs=511.5
Q ss_pred ccceEEEEEEEEEeccccc------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 046969 32 RGTFLVWENLFAVLPNFGN------NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN 105 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~------~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n 105 (697)
.+..++|+||+|.++.... ..+.+++|+|||+.++|||++|||||||||||||||+|+|+.+++ ..+|+|.+|
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~in 942 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRIS 942 (1470)
T ss_pred CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEEC
Confidence 3458999999999964211 113457999999999999999999999999999999999997643 358999999
Q ss_pred CEecCc--CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 106 GKKTRV--DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 106 G~~~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
|++... .++.+|||+|+|.+++.+||+|||.|++.+++|...+++++.++++++++.+||.+++|+.+|+..+++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 987642 246799999999999999999999999988877666777777889999999999999999999877789999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC-Ceeeee
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG-GETVYF 262 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~-G~iv~~ 262 (697)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++ |+++|+
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998788999999999995 899999
Q ss_pred cCh----hhHHHHHHhc-CCC-CCCCCCchhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHH
Q 046969 263 GEA----KLAVEFFAEA-GFP-CPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESY 336 (697)
Q Consensus 263 G~~----~~~~~~f~~~-g~~-~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (697)
|++ +++++||+++ |.+ ||+..|||||++|+++.+.+. ....++.+.|
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------------------------~~~~d~~~~~ 1155 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------------------------KLGIDFAEHY 1155 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------------------------cccchHHHHH
Confidence 996 5789999997 664 999999999999997643110 0012478899
Q ss_pred HhcHHHHHHHHHHHHhhhhcccc--hhhccCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046969 337 RRSKYAKRARARIQELSAMEGLE--IEIKTISKASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVG 414 (697)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~ 414 (697)
++|+.+++..+.+++........ ......+.++|++|+++|++|+++++||||.++++|+++++++|+++|++||+++
T Consensus 1156 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~ 1235 (1470)
T PLN03140 1156 KSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVG 1235 (1470)
T ss_pred hccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99998877766555443211111 1112346789999999999999999999999999999999999999999999999
Q ss_pred CCh---HHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046969 415 TGY---TAILARISCGAFITGFMTFMSI-GGFPSFIEEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITF 490 (697)
Q Consensus 415 ~~~---~~i~~r~~~~~f~~~~~~~~s~-~~~p~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y 490 (697)
+++ .++++|.|++|+.+.|+.+..+ +.+|.|..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 1236 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y 1315 (1470)
T PLN03140 1236 TKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVY 1315 (1470)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 5677889999988888777544 668999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccc
Q 046969 491 FMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLS 570 (697)
Q Consensus 491 ~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS 570 (697)
||+||+++++.||+|+++++++.++++++|+++++++||+.+|.++++++++++++|+||++++++||.| |+| ++|+|
T Consensus 1316 ~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~-~~W-~~~is 1393 (1470)
T PLN03140 1316 AMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW-WVW-YYWIC 1393 (1470)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchH-HHH-HHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 999 99999
Q ss_pred HHHHHHHHHHHhhhCCCccCCCCCCC-CccCHHHHHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046969 571 YGSWAIQGAYKNDFLGVEFDPMFPGE-PKLKGEDIIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILKFKER 644 (697)
Q Consensus 571 ~~~ya~e~l~~nef~g~~~~~~~~~~-~~~~G~~vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 644 (697)
|++|+++|++.|||.|.+++|.+++. +..++++++.+.||++.++ .|++++++++++++|++++++++|+...
T Consensus 1394 p~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1394 PVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887766653 2357889988889998664 8999999999999999999999887654
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-100 Score=946.57 Aligned_cols=595 Identities=24% Similarity=0.397 Sum_probs=507.6
Q ss_pred CccceEEEEEEEEEec-c-------------------c----c---ccccccceeeceEEEEeCCeEEEEECCCCCcHHH
Q 046969 31 ARGTFLVWENLFAVLP-N-------------------F----G---NNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKST 83 (697)
Q Consensus 31 ~~~~~l~~~~l~~~~~-~-------------------~----~---~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKST 83 (697)
.+.+.+.|+||+++.. . . + .++.+++||+|+||.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 3467899999998754 0 0 0 1113567999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCc--CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHH--
Q 046969 84 LLDSLAGRLSRHVIMTGNVLFNGKKTRV--DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSS-------MSKEDI-- 152 (697)
Q Consensus 84 LL~~LaG~~~~~~~~~G~I~~nG~~~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~-------~~~~~~-- 152 (697)
|||+|+|+++++...+|+|.+||++... .++.++||+|+|.+++++||+|||.|+++++.+.. .+++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 9999999998755569999999998642 25679999999999999999999999988764321 112211
Q ss_pred ----------------------HHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046969 153 ----------------------KSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSG 210 (697)
Q Consensus 153 ----------------------~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsg 210 (697)
+..++++++.+||++|+||.||+..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1246789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHHhcCCCCCCCCCchhhH
Q 046969 211 LDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPSRRNPSDHF 289 (697)
Q Consensus 211 LD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~ 289 (697)
||+.++.++++.|+++++ .|+|||+++|||+++++++||+|++|++|+++|+||++++.+||+++|++||++.|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 5899999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhc--ccchhhccCCC
Q 046969 290 LRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESYRRSKYAKRARARIQELSAME--GLEIEIKTISK 367 (697)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 367 (697)
+++++.+.+... . . ..+. |.... ..+++.++|++|..+++..++++...... .......+.+.
T Consensus 447 ~~v~s~~~~~~~-~-~----~~~~-----p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 511 (1470)
T PLN03140 447 QEVTSKKDQEQY-W-A----DRNK-----PYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYS 511 (1470)
T ss_pred HHhcCchhhhhh-h-h----ccCC-----ccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCc
Confidence 998875322110 0 0 0000 00000 12458899999988777666554322111 00011123467
Q ss_pred CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 046969 368 ASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVGTGY---TAILARISCGAFITGFMTFMSIGGFPS 444 (697)
Q Consensus 368 ~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~---~~i~~r~~~~~f~~~~~~~~s~~~~p~ 444 (697)
.+++.|++.+++|.+++++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||.+.++++.+++.++.
T Consensus 512 ~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~ 591 (1470)
T PLN03140 512 VPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELAL 591 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999997543 345677888889888888888899999
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046969 445 FIEEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVA 524 (697)
Q Consensus 445 ~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia 524 (697)
++.||+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.+++++++++++
T Consensus 592 ~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 592 MIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred HHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCC-CCCCCccCHHH
Q 046969 525 SLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPM-FPGEPKLKGED 603 (697)
Q Consensus 525 ~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~-~~~~~~~~G~~ 603 (697)
+++|++.+|+.++++++.++++|+||+++.++||+| |+| ++|+||++||+||++.|||.+..+.+. +.+.....|++
T Consensus 672 a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w-~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~ 749 (1470)
T PLN03140 672 SVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNW-WEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTA 749 (1470)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHccceechHhCchH-HHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHH
Confidence 999999999999999999999999999999999985 999 999999999999999999998776532 22335679999
Q ss_pred HHhhhcCCccC-chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046969 604 IIKNTFGISID-RSKWWDLSAIVVILISYRLLFFIILKFKE 643 (697)
Q Consensus 604 vL~~~~g~~~~-~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 643 (697)
+|+. +|++.+ .+.|+|+++|++++++|+++++++|++..
T Consensus 750 ~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 750 VLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9975 788654 35799999999999999999999999866
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-99 Score=939.60 Aligned_cols=576 Identities=25% Similarity=0.428 Sum_probs=502.7
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-cC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-VD 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~~ 112 (697)
..++|+||++.++. +..++++|+|||++++|||++|||||||||||||||+|+|+.+++...+|+|.+||++.. ..
T Consensus 758 ~~l~~~nl~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 758 DIFHWRNLTYEVKI---KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred ceEEEEeeEEEecC---CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 46899999999852 113578999999999999999999999999999999999998754345799999999874 23
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.+|||+|+|.+++.+||+|||.|++.++.|...++++++++++++++.+||.+++|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 56799999999999999999999999998877666777888899999999999999999998643 48999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCC-eeeeecCh----h
Q 046969 193 LEILTKPQ-LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG-ETVYFGEA----K 266 (697)
Q Consensus 193 ~~Ll~~P~-lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G-~iv~~G~~----~ 266 (697)
+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999999889999999999987788999999999987 99999997 5
Q ss_pred hHHHHHHhcCC-CCCCCCCchhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHHHhcHHHHHH
Q 046969 267 LAVEFFAEAGF-PCPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESYRRSKYAKRA 345 (697)
Q Consensus 267 ~~~~~f~~~g~-~~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~ 345 (697)
++++||++.|+ +||++.|||||++|+++.+.+. +...++.+.|+.|...++.
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~---------------------------~~~~~~~~~~~~s~~~~~~ 1046 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA---------------------------HANQDYHEVWRNSSEYQAV 1046 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc---------------------------chhccHHHHHhcCHHHHHH
Confidence 68999999996 9999999999999998653211 0012477888888877766
Q ss_pred HHHHHHhhhhcc-c----chhhccCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Q 046969 346 RARIQELSAMEG-L----EIEIKTISKASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVGTGYTAI 420 (697)
Q Consensus 346 ~~~~~~~~~~~~-~----~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i 420 (697)
.+.+++...... . .......++++|++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i 1126 (1394)
T TIGR00956 1047 KNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGL 1126 (1394)
T ss_pred HHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 655544322111 0 01111346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCH
Q 046969 421 LARISCGAFITGFMTFMSIGGFPSFIEEMKIF-YHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGF 499 (697)
Q Consensus 421 ~~r~~~~~f~~~~~~~~s~~~~p~~~~er~v~-~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~ 499 (697)
++|+|++|+++.+..++....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++
T Consensus 1127 ~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~ 1206 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNA 1206 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcc
Confidence 99999999888877777667889999999886 99999999999999999999999999999999999999999999887
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHH
Q 046969 500 SY-------FAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYG 572 (697)
Q Consensus 500 ~~-------f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~ 572 (697)
.. |++|+++++++..+++++|+++++++||..+|..+++++++++++|+||++++++||.+ |+| ++|+||+
T Consensus 1207 ~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~-~~w-~~~~sp~ 1284 (1394)
T TIGR00956 1207 SKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF-WIF-MYRCSPF 1284 (1394)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHH-HhH-HHhcCHH
Confidence 65 99999999999999999999999999999999999999999999999999999999985 999 9999999
Q ss_pred HHHHHHHHHhhhCCCccCCCCC--------------------------------------CCCccCHHHHHhhhcCCccC
Q 046969 573 SWAIQGAYKNDFLGVEFDPMFP--------------------------------------GEPKLKGEDIIKNTFGISID 614 (697)
Q Consensus 573 ~ya~e~l~~nef~g~~~~~~~~--------------------------------------~~~~~~G~~vL~~~~g~~~~ 614 (697)
+|+++|++.|||.|.+++|... -|++.+|+++|+. ++++.+
T Consensus 1285 ~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~ 1363 (1394)
T TIGR00956 1285 TYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS 1363 (1394)
T ss_pred HHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc
Confidence 9999999999999988755320 0124699999996 677655
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046969 615 RSKWWDLSAIVVILISYRLLFFIILKFKERA 645 (697)
Q Consensus 615 ~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 645 (697)
+ .|+|+++++++++++ ++++++|.++.|+
T Consensus 1364 ~-~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1364 G-RWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred c-cccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 4 899999999999999 7888888776543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-100 Score=890.83 Aligned_cols=578 Identities=30% Similarity=0.475 Sum_probs=510.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--c
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--V 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~ 111 (697)
-...|+|+.++++. ++ +++++|+||+|.++||.++||||+||||||||||+||||...+ .++|+|++||.+.. .
T Consensus 786 ~V~~w~dl~~~~~~--qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~t 861 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPI--QG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQET 861 (1391)
T ss_pred ceEEEEeCCccccc--cc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhh
Confidence 35788888888864 33 5789999999999999999999999999999999999998765 57999999999975 3
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||.|+|.|.+.+||||.|.|+|.||+|...+.+++.+.||++++.++|++++|.+||+.. .|||.+|||||+|
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTI 940 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTI 940 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeE
Confidence 468899999999999999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred HHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec-CCeeeeecChhh--
Q 046969 192 ALEILTKP-QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS-GGETVYFGEAKL-- 267 (697)
Q Consensus 192 a~~Ll~~P-~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~-~G~iv~~G~~~~-- 267 (697)
|+||+.|| .||||||||||||+.+|..|++.+|++++.|+||+||+||||.++++.||++++|+ +|++||+||..+
T Consensus 941 gVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 941 GVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999997 889999999764
Q ss_pred --HHHHHHhcC-CCCCCCCCchhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHHHhcHHHHH
Q 046969 268 --AVEFFAEAG-FPCPSRRNPSDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESYRRSKYAKR 344 (697)
Q Consensus 268 --~~~~f~~~g-~~~p~~~npad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~ 344 (697)
+++||++.| .+||...|||||+||++....+. +...++.+.|++|+.+++
T Consensus 1021 ~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------------------------~~~~D~a~~w~~S~e~k~ 1073 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------------------------SLSVDFAEIWKNSEEYKR 1073 (1391)
T ss_pred HHHHHHHHhcCCccCCCCCChHHHHHhhccccccc---------------------------ccCccHHHHHhccHHHHH
Confidence 567999975 99999999999999998653221 011258899999999999
Q ss_pred HHHHHHHhhhhc-c--cchhhccCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q 046969 345 ARARIQELSAME-G--LEIEIKTISKASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVGTGYTAIL 421 (697)
Q Consensus 345 ~~~~~~~~~~~~-~--~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i~ 421 (697)
+.+.++++.... + ...+..+.+.+|+|.|++.+++|++..+||+|.|+++|++..++.|+++|+.||++|++..+++
T Consensus 1074 ~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lq 1153 (1391)
T KOG0065|consen 1074 NKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQ 1153 (1391)
T ss_pred HHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHH
Confidence 999888876532 2 2223344577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHH
Q 046969 422 ARISCGAFITGFMTFMSIGGF-PSFIEEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFS 500 (697)
Q Consensus 422 ~r~~~~~f~~~~~~~~s~~~~-p~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~ 500 (697)
|.++++|..+.+......+.. |.+..||.+++||+.+|+||+.+|++|++++|+|+.++++.+|.+|+|+|+||..++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 999998888777665544544 4556689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHH
Q 046969 501 YFAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAY 580 (697)
Q Consensus 501 ~f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~ 580 (697)
+|++|++..+++.++.+++|+++.+++||.++|.++.+.+..++.+||||++|++.||.| |+| ++|+||++|.+++++
T Consensus 1234 ~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~f-W~w-my~lsP~ty~l~gli 1311 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKF-WIW-MYYLSPVTYTLEGLI 1311 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccce-eee-eeecCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 999 999999999999999
Q ss_pred HhhhCCCccCCCCCCC------CccCHHHHHhhhcC----CccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046969 581 KNDFLGVEFDPMFPGE------PKLKGEDIIKNTFG----ISIDRSKWWDLSAIVVILISYRLLFFIILKFKERAC 646 (697)
Q Consensus 581 ~nef~g~~~~~~~~~~------~~~~G~~vL~~~~g----~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 646 (697)
.-++++.+-.|...+. +-.+-.++++.++| +..+.. -....+.+++.+++.+++....|+.++.+
T Consensus 1312 ~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~-a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1312 SSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL-ATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred HHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc-ceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 9999988777754331 22345566777777 543321 12234556678888988888888877754
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.6e-94 Score=838.40 Aligned_cols=574 Identities=26% Similarity=0.474 Sum_probs=507.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CCCeEEEEecCCCCCCCCCH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--DSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~~~~i~yv~Q~~~l~~~lTV 131 (697)
..++|+|+||.++||+++.++||+||||||||++|+|.++.....+|+|.+||.+.+. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 3479999999999999999999999999999999999988766668999999998653 25789999999999999999
Q ss_pred HHHHHHHhhccCCCC----CCHHHHH-HHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 046969 132 RETITYSAHLRLPSS----MSKEDIK-SHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDE 206 (697)
+|+|.|+++++.|.. .++.++. +..+.+++.+||++|+||+|||...||+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999998742 2333333 26789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHHhcCCCCCCCCCc
Q 046969 207 PSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPSRRNP 285 (697)
Q Consensus 207 PtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np 285 (697)
+|+|||+.++.++++.||++++. +.|+++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999984 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhccCcchhhhhhccccccccCCCCCCcccchhHHHHHHHHHHHHHhcHHHHHHHHHHHHhhhhcccc--hhhc
Q 046969 286 SDHFLRCVNSDFDAVTTTLKGSQRIRDVPSSSDPFMNMATAEIKARLVESYRRSKYAKRARARIQELSAMEGLE--IEIK 363 (697)
Q Consensus 286 ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~ 363 (697)
|||+.++++. .+......+. ..+.... ..+++.+.|.+|+.+++...+++......... ....
T Consensus 367 ADfLt~vts~-k~~~~~~~~~----------~~~~~~~----~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s 431 (1391)
T KOG0065|consen 367 ADFLTEVTSK-KDQEQYWNKR----------SKPYPYT----SVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVS 431 (1391)
T ss_pred HHHHHHhhcC-cccccccccc----------CCCcccC----CHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcC
Confidence 9999998872 2211111100 0111111 13568899999999988877776543322111 1123
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046969 364 TISKASWWKQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDVG-TGYTAILARISCGAFITGFMTFMSIGGF 442 (697)
Q Consensus 364 ~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~-~~~~~i~~r~~~~~f~~~~~~~~s~~~~ 442 (697)
+.+..+.|.|++.+++|.|..+.||..++..+.++.+++|+++|++|++.+ .+..+.+.|+|++||...+.+|++++.+
T Consensus 432 ~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi 511 (1391)
T KOG0065|consen 432 SKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEI 511 (1391)
T ss_pred CceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHH
Confidence 456789999999999999999999999999999999999999999999999 7777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 046969 443 PSFIEEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMV 522 (697)
Q Consensus 443 p~~~~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ 522 (697)
+..++.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||++++++||++++.++++..++.+++++
T Consensus 512 ~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ 591 (1391)
T KOG0065|consen 512 ALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRF 591 (1391)
T ss_pred HHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCC----------
Q 046969 523 VASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPM---------- 592 (697)
Q Consensus 523 ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~---------- 592 (697)
+++++++...|+.+|++.+.++.+++||+++.++||+| |+| ++|+||+.||+|+++.|||+|.+++|.
T Consensus 592 ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W-~~W-i~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~ 669 (1391)
T KOG0065|consen 592 IASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPW-FRW-IAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNIS 669 (1391)
T ss_pred HHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchH-HHH-HHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccc
Confidence 99999999999999999999999999999999999974 999 999999999999999999999988876
Q ss_pred --C---------CCCCccCHHHHHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046969 593 --F---------PGEPKLKGEDIIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILKFKERA 645 (697)
Q Consensus 593 --~---------~~~~~~~G~~vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 645 (697)
. +|..++.|+++++..|+++.. +.|+|++|++|+.++|.++..+++-|.+..
T Consensus 670 ~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~-~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 670 IENKVCAATGATLGNDYVSGRDYLKVQYQYEYK-WYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred cccccchhhccccCceEEecccccccccccccc-eeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1 233457788888777777654 499999999999999999999877665543
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-51 Score=401.42 Aligned_cols=215 Identities=28% Similarity=0.421 Sum_probs=196.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.++++||++.+ ++..+|+|||+++++||+++|+|||||||||||+||.|+.+++ +|+|.++|.++.
T Consensus 2 mi~i~~l~K~f-------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF-------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe-------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhh
Confidence 47899999987 3678999999999999999999999999999999999999885 999999997642
Q ss_pred --cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 111 --VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 111 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
..++.+|+|+|+..|||.+||.||++++...- .+.++++.++++.++|+.+||.+.+|.+. .+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHH
Confidence 12577999999999999999999999986432 35788999999999999999999999854 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+|||||+.+|+++++|||||+|||....++++.+++||++|.|.||+||+. ..+.+.+|||++|++|+++..|++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999997 57889999999999999999998874
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=398.15 Aligned_cols=219 Identities=28% Similarity=0.378 Sum_probs=199.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR----- 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----- 110 (697)
++++|+++.+... +.....+|+|||++|++||+++|+|.||||||||++++.++..|+ +|+|.+||+++.
T Consensus 2 I~l~~vsK~~~~~--~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~ 76 (339)
T COG1135 2 IELENVSKTFGQT--GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEA 76 (339)
T ss_pred eEEEeeeeeeccC--CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChH
Confidence 7899999888642 213457999999999999999999999999999999999999885 999999998753
Q ss_pred ---cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 111 ---VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 111 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
..++.||+++|+..|+...||.||+.|..++. ..++++++++|.++++.+||++.+|++. .+|||||||
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQ 148 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQ 148 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhh
Confidence 12578999999999999999999999998875 4789999999999999999999998865 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+|||||+.+|+||++|||||+|||.+...|++.|+++.++ |.||+++||++ +-+.++|||+.+|++|++++.|+..
T Consensus 149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHH
Confidence 999999999999999999999999999999999999999875 99999999997 5788999999999999999999987
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
++
T Consensus 228 ~v 229 (339)
T COG1135 228 EV 229 (339)
T ss_pred Hh
Confidence 54
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.6e-48 Score=407.85 Aligned_cols=221 Identities=37% Similarity=0.534 Sum_probs=198.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+.+ .+.+|+||||++++||++|++||||||||||||+|+|+.+|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~~------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKYGG------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEeCC------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHH
Confidence 5788999988731 478999999999999999999999999999999999999984 9999999988642
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.+||++|++.+++.|||+|||.|.+.++.+. .+..+++++++++.+||.+.+++++ ++||+||||||+
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ 146 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLS 146 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHH
Confidence 2467999999999999999999999999998543 2455678999999999998666655 589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDG-RTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g-~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||+||+.+|++|||||||+|||+.++..+.+.|++++++| +||++|||++ +++..+||+|++|++|++++.|++++..
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999987 8999999997 5899999999999999999999988866
Q ss_pred HHHH
Q 046969 270 EFFA 273 (697)
Q Consensus 270 ~~f~ 273 (697)
..+.
T Consensus 226 ~~~~ 229 (293)
T COG1131 226 EKFG 229 (293)
T ss_pred Hhhc
Confidence 6554
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-48 Score=385.81 Aligned_cols=216 Identities=26% Similarity=0.445 Sum_probs=199.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+. .+.+++|+|++|++||+++++|||||||||+||+|.++.+|+ +|+|++||+++..
T Consensus 2 I~~~nvsk~y~-------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 2 IEFENVSKRYG-------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPV 71 (309)
T ss_pred ceeeeeehhcC-------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHH
Confidence 68999998763 578999999999999999999999999999999999999985 9999999999752
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--ccCccccCccCCCCCHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD--CADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.||||-|.-.|||++||.||+.+...+. ++++++++++++++++.+||++ .++++ +++|||||+||
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQR 143 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQR 143 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhH
Confidence 2578999999999999999999999988775 5788999999999999999974 67774 57899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|.+||||+.+|++|++|||+++|||-++.++.+.++++.++ |+|||++|||. +|.++++|||++|++|+++..++|++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999886 99999999996 79999999999999999999999997
Q ss_pred HHH
Q 046969 268 AVE 270 (697)
Q Consensus 268 ~~~ 270 (697)
.+.
T Consensus 223 il~ 225 (309)
T COG1125 223 ILA 225 (309)
T ss_pred HHh
Confidence 654
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=385.18 Aligned_cols=205 Identities=31% Similarity=0.438 Sum_probs=187.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..+.++++++.+. ...+|+|+|+++++||+++|+||||||||||||+|||+.+++ +|+|.++|+++....
T Consensus 2 ~~l~i~~v~~~f~-------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFG-------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPG 71 (248)
T ss_pred ceEEEEeeEEEeC-------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCC
Confidence 3578999998873 377999999999999999999999999999999999999985 999999999986556
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIAL 193 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~ 193 (697)
..++||+|++.|+|.+||+||+.++...+. .++++.++++++.++.+||.+..|.+ +++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHH
Confidence 789999999999999999999999988752 45677778999999999999999885 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 194 EILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
||+.+|++|+||||+++||+.|+..+.+.|.++.++ ++||+++|||. +|...++|||++|+++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999998864 89999999997 6889999999999984
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-47 Score=378.70 Aligned_cols=219 Identities=29% Similarity=0.435 Sum_probs=198.8
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
...+++++|++.+ +.+.|++|||+.|++||+++||||||||||||||+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~l 75 (263)
T COG1127 6 EPLIEVRGVTKSF-------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQL 75 (263)
T ss_pred cceEEEeeeeeec-------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhcc
Confidence 4579999999876 4688999999999999999999999999999999999999985 9999999998631
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCH
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSG 183 (697)
.++++|+++|+..||..|||.||+.|..+-. ...+++.+++.+..-++.+||... +|. ++.+|||
T Consensus 76 s~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSG 148 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSELSG 148 (263)
T ss_pred CHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----Cchhhcc
Confidence 1467999999999999999999999976543 357788899999999999999876 555 5678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||+++|||++.||+++|+||||+||||.++..+.++|+++.+. |.|++++|||. ++++.+|||+++|.+|+++..
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999986 99999999997 589999999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+++++.
T Consensus 228 Gt~~el~ 234 (263)
T COG1127 228 GTPEELL 234 (263)
T ss_pred CCHHHHH
Confidence 9998764
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-47 Score=379.93 Aligned_cols=208 Identities=31% Similarity=0.451 Sum_probs=182.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR----- 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----- 110 (697)
++.+||++.+.. +.....+|+++|+.+++||+++|+|||||||||||++|+|+..|+ +|.|.++|++..
T Consensus 2 i~~~~v~k~y~~---~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGL---GGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEecc---CCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHH
Confidence 568899988753 112367999999999999999999999999999999999999885 999999998753
Q ss_pred ----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccC-ccccCccCCCCCHHH
Q 046969 111 ----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCAD-TVIGNWHLRGISGGE 185 (697)
Q Consensus 111 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-~~vg~~~~~~LSGGe 185 (697)
.+++.+|||+|+..|+|++||+||+.+.+.+.. .+..+.++.++++++.+||.+..+ ++ +.+|||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGq 147 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQ 147 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHH
Confidence 124679999999999999999999999876542 233356778889999999997666 54 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
||||+|||||+.+|+++++||||.+||+.++..|++.|++++++ |+|||++|||| ++...|||++.|.+|++
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999999876 99999999997 68899999999999984
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.4e-47 Score=389.24 Aligned_cols=218 Identities=37% Similarity=0.461 Sum_probs=193.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+.+||++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|.+++. +|+|+++|+++..
T Consensus 2 ~L~~~~ls~~y~-------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGYG-------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEEC-------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCH
Confidence 588999999873 578999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS--SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
..+.+|||||.......+||+|.+.++..-+... ..++++ ++.+++.++.+|+.+.+++.+. .|||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D-~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQ 145 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKED-EEIVEEALELLGLEHLADRPVD-----ELSGGERQ 145 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhH-HHHHHHHHHHhCcHHHhcCccc-----ccChhHHH
Confidence 2468999999998888999999999875432211 123333 4579999999999999999874 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||.||+||+.+|++|+||||||.||...+.++++.++++++ +|+|||+++||+. ...++||++++|++|+++++|+|+
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcc
Confidence 99999999999999999999999999999999999999996 5999999999984 789999999999999999999998
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+++
T Consensus 225 evl 227 (258)
T COG1120 225 EVL 227 (258)
T ss_pred hhc
Confidence 764
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-47 Score=368.21 Aligned_cols=232 Identities=30% Similarity=0.398 Sum_probs=206.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----c
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR----V 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----~ 111 (697)
|+.++|+++++. ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|.+||.+.. .
T Consensus 2 l~v~~l~K~y~~------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 2 LEVTDLTKSYGS------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSF 72 (245)
T ss_pred eeeeehhhhccC------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHH
Confidence 678888887742 455999999999999999999999999999999999999985 999999998853 2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.||.++.+..++..||++|||.|.+++. .+++.+.+++.+++.+.++|.+++|+.+| ++|.|+||||+|
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~i 144 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAI 144 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHH
Confidence 3578999998889999999999999999986 57788999999999999999999999997 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEF 271 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~ 271 (697)
||||+++|++++|||||||||..+...+.+.++++.++|++||+++|.. +|+.++||++++|++|++|+.|++++...-
T Consensus 145 ARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 145 ARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 689999999999999999999998764332
Q ss_pred HHhcCCCCCCCCCchhhHHHHh
Q 046969 272 FAEAGFPCPSRRNPSDHFLRCV 293 (697)
Q Consensus 272 f~~~g~~~p~~~npad~~l~~~ 293 (697)
- ...|+.+-+...+
T Consensus 224 ~--------~~~~le~~f~~~l 237 (245)
T COG4555 224 T--------VLRNLEEIFAFAL 237 (245)
T ss_pred H--------hhcCHHHHHHHhh
Confidence 1 1345555555544
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=398.82 Aligned_cols=217 Identities=27% Similarity=0.438 Sum_probs=200.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--- 110 (697)
+.|+++||++.+.+ .. +|+++|+++++||+++|+||||||||||||+|||+.+++ +|+|.++|++..
T Consensus 2 ~~i~l~~v~K~yg~------~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~ 71 (338)
T COG3839 2 AELELKNVRKSFGS------FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71 (338)
T ss_pred cEEEEeeeEEEcCC------ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCC
Confidence 46899999998732 22 999999999999999999999999999999999999885 999999999874
Q ss_pred cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 111 VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 111 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
...+.+|+|+|+..|||+|||+||+.|+.+++ ..++++++++|+++.+.++|++..|++. ++|||||||||+
T Consensus 72 P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVA 143 (338)
T COG3839 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVA 143 (338)
T ss_pred hhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHH
Confidence 23578999999999999999999999998876 5678999999999999999999999975 689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|||||+.+|++++||||+|+||...+..+...|+++.++ |.|+|.+|||. .|+..++|||.+|++|++...|++.++.
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 999999999999999999999999999999999999875 89999999997 6899999999999999999999998764
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-46 Score=381.73 Aligned_cols=218 Identities=30% Similarity=0.486 Sum_probs=189.7
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
..++++||++.+.+ . ++|+|||+.+++|++++|+||||||||||+|+|.|+++|. +|+|.++|++....
T Consensus 3 ~~i~v~nl~v~y~~------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYGN------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEECC------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccc
Confidence 46899999999842 3 6999999999999999999999999999999999999884 99999999986533
Q ss_pred -CCeEEEEecCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 113 -SGVLAYVTQEN---VLLGTLTVRETITYSAHLRLP--SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 113 -~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
+..||||||.. .-|| +||+|.+..+...+.. ...++++ ++.+++.|+.+|+.+.+|+.+| .|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 36899999954 2344 6999999987433321 1233444 6789999999999999999997 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|||.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||+ ..+.+.||+|++|+ +++++.|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChh
Confidence 999999999999999999999999999999999999999999999999999998 57999999999996 6788999998
Q ss_pred hHHH
Q 046969 267 LAVE 270 (697)
Q Consensus 267 ~~~~ 270 (697)
++.+
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 7543
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-47 Score=402.24 Aligned_cols=217 Identities=26% Similarity=0.446 Sum_probs=200.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--- 110 (697)
..++++||++.+. +..+|+|+|+.|++||+++++|||||||||||++|||+..|+ +|+|.+||+++.
T Consensus 4 ~~l~i~~v~k~yg-------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSFG-------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeecC-------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCC
Confidence 4689999998872 578999999999999999999999999999999999999985 999999999974
Q ss_pred cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 111 VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 111 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
..++.+|+|+|+..|||+|||.||+.|+.+++ ....+++++++|++.++.++|++.+++++ .+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHH
Confidence 34688999999999999999999999998844 23456778999999999999999999866 589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||. +|...++|||.+|++|++...|+|+++
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999999999875 99999999996 689999999999999999999999875
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-46 Score=370.37 Aligned_cols=221 Identities=31% Similarity=0.441 Sum_probs=194.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
+.++++||++.++ .++++|+|||+.|++||++||+|||||||||||++|+|+.+++ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~ 72 (258)
T COG3638 2 MMIEVKNLSKTYP------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLK 72 (258)
T ss_pred ceEEEeeeeeecC------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccc
Confidence 4689999999986 3688999999999999999999999999999999999998875 8999999987521
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC------CCCHHHHHHHHHHHHHHcCCCcccCccccCccCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS------SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLR 179 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 179 (697)
.++.+||++|+..|.+.+||.||+..+..-+.+. -.++++ ++.+-+.++.+|+.+.+-++.+
T Consensus 73 ~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~d-k~~Al~aLervgi~~~A~qra~----- 146 (258)
T COG3638 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED-KAQALDALERVGILDKAYQRAS----- 146 (258)
T ss_pred hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHHHHhc-----
Confidence 2467999999999999999999998765433221 134444 4566778999999998888775
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.|||||+|||+|||+|+.+|++++.|||+++|||.++++||+.|+++++ +|.|||++.||. +-+.++|||++-|++|+
T Consensus 147 ~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGR 225 (258)
T ss_pred cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCc
Confidence 6999999999999999999999999999999999999999999999997 599999999996 57889999999999999
Q ss_pred eeeecChhhHHH
Q 046969 259 TVYFGEAKLAVE 270 (697)
Q Consensus 259 iv~~G~~~~~~~ 270 (697)
++|+||++++.+
T Consensus 226 ivfDg~~~el~~ 237 (258)
T COG3638 226 IVFDGPASELTD 237 (258)
T ss_pred EEEeCChhhhhH
Confidence 999999987544
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-46 Score=381.50 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=196.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK---KTR- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~---~~~- 110 (697)
.+.++++++.+ +...+++|||+.|+.||++|++|||||||||||++|||+..|+ .|.|.+||+ +..
T Consensus 2 ~i~i~~~~~~~-------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF-------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc-------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhc
Confidence 46677777665 3567899999999999999999999999999999999999985 999999999 432
Q ss_pred --cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 111 --VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 111 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
...+.||||+|+..+|+.|||.+|+.|+.+.+ ....++.+++.+|+++|+.+.|++.++++ +.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHH
Confidence 23478999999999999999999999999877 23456778899999999999999998885 47899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|++||||+..|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+ .|++++||||++|++|+|...|++++
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 99999999997 68999999999999999999999997
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
+.
T Consensus 225 v~ 226 (345)
T COG1118 225 VY 226 (345)
T ss_pred Hh
Confidence 63
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.2e-45 Score=387.57 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=195.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+. .+.+|+|||+++++||+++|+||||||||||+++|+|+++++ +|+|.++|.++..
T Consensus 7 ~i~i~~l~k~~~-------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 7 PIDFRNVEKRYG-------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRAR 76 (306)
T ss_pred eEEEEeEEEEEC-------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchH
Confidence 689999999873 357999999999999999999999999999999999999885 8999999998642
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.+|||+|++.+++.+||+||+.|.+.++ ..+.++..++++++++.++|.+.+++.++ +|||||||||+
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 148 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLT 148 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHH
Confidence 2467999999999999999999999877654 23455556778899999999998888774 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVE 270 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~ 270 (697)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999988899999999997 58999999999999999999999987644
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-44 Score=392.19 Aligned_cols=216 Identities=26% Similarity=0.414 Sum_probs=195.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRFG-------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEeC-------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 589999999873 356999999999999999999999999999999999999874 8999999998632
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|+..+||.+||+||+.|....+ ..++++.+++++++++.+||++.+|+.+ ++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHH
Confidence 2467999999999999999999999987643 3456677888999999999999988865 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++ .++.+++|++++|++|++++.|++++..
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 99999999997 5899999999999999999999988654
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=392.35 Aligned_cols=216 Identities=25% Similarity=0.408 Sum_probs=195.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++ ..+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.+||+++..
T Consensus 3 ~l~i~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999873 1356999999999999999999999999999999999999884 9999999998632
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|++.+||.+||+||+.|..+.+ ..++++.+++++++++.+||.+.+++.+ ++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHH
Confidence 2467999999999999999999999987643 2456677788999999999999888866 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++||++ .++.+++|++++|++|+++..|++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999999999999875 99999999997 589999999999999999999998865
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.3e-44 Score=388.27 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=193.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++. .+ ..+.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~--~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 2 IKLSNITKVFHQ--GT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNS 75 (343)
T ss_pred EEEEEEEEEECC--CC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 789999998842 11 1357999999999999999999999999999999999999885 8999999998632
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.+||++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+.+|+.+ ..|||||||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQ 147 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 1457999999999999999999999976543 2456677788999999999999888765 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|+++
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 99999999997 5788999999999999999999987
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 227 ~v 228 (343)
T TIGR02314 227 EI 228 (343)
T ss_pred HH
Confidence 65
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=369.74 Aligned_cols=215 Identities=30% Similarity=0.465 Sum_probs=188.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSFG-------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChh
Confidence 46889998873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++||+|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++.+ +.|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 13569999999999999999999998754321 2345555677889999999988777766 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 89999999997 4788999999999999999999876
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 223 ~~ 224 (235)
T cd03261 223 EL 224 (235)
T ss_pred HH
Confidence 53
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.2e-45 Score=349.00 Aligned_cols=211 Identities=27% Similarity=0.400 Sum_probs=192.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR----- 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----- 110 (697)
++|+|+++.|++ .+.+|+|||+.+++||++-|+||||||||||||+|.+...|+ +|+|.+||+++.
T Consensus 2 I~f~~V~k~Y~~------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 2 IRFENVSKAYPG------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGR 72 (223)
T ss_pred eeehhhhhhcCC------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeeccccccc
Confidence 689999988763 477999999999999999999999999999999999999885 999999999863
Q ss_pred ---cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 111 ---VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 111 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
..++.||+|+||..|++..||.||+.|+.+.. ..+.++++++|.++|+.+||.+.++.. +.+|||||||
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQ 144 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQ 144 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHH
Confidence 12578999999999999999999999998876 567889999999999999999988875 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||+||||++.+|++|+.||||.+||+..+.+|++++.++.+.|.||+++||+- .-+..+-.|++.|++|+++....
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999994 56777888999999999987643
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=389.14 Aligned_cols=215 Identities=25% Similarity=0.452 Sum_probs=195.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.+||+++..
T Consensus 6 ~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRFG-------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEEC-------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 689999999873 356999999999999999999999999999999999999885 9999999998642
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|+..+||.+||.||+.|..+.+ ..++++.+++++++++.+||.+.+|+.+ +.|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHH
Confidence 2467999999999999999999999987654 2456677788999999999998888765 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++ .++.+++|++++|++|+++..|++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999875 89999999997 589999999999999999999999865
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4e-44 Score=389.40 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=195.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMT--GNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~--G~I~~nG~~~~~- 111 (697)
.|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ + |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAYG-------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEEC-------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCC
Confidence 478999999873 356999999999999999999999999999999999999885 7 999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++||+|+..+|+.+||+||+.|+...+ ..++++.+++++++++.+||++..|+.+ ++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHH
Confidence 2467999999999999999999999987643 3456677788999999999999888876 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD--GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~--g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++||++ +++..++|+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999886 79999999997 58899999999999999999999886
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 226 ~~ 227 (362)
T TIGR03258 226 LY 227 (362)
T ss_pred HH
Confidence 53
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.7e-44 Score=384.13 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=195.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++||++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|+++++ +|+|.++|++...
T Consensus 40 ~~i~i~nl~k~y~-------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSYG-------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcch
Confidence 4699999999873 457999999999999999999999999999999999999885 8999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.+||++|+..+++.+||.||+.+.+.++ ..+..+..++++++++.++|.+..++.++ +|||||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHH
Confidence 2467999999999999999999999876554 23344556678889999999998888775 7999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+|++|++|++++.|++++..
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999988899999999997 5899999999999999999999998765
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
+
T Consensus 261 ~ 261 (340)
T PRK13536 261 D 261 (340)
T ss_pred h
Confidence 4
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.3e-44 Score=389.29 Aligned_cols=217 Identities=23% Similarity=0.392 Sum_probs=195.4
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
...|+++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|+++..
T Consensus 12 ~~~L~l~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~ 81 (375)
T PRK09452 12 SPLVELRGISKSFD-------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHV 81 (375)
T ss_pred CceEEEEEEEEEEC-------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCC
Confidence 34589999999873 356999999999999999999999999999999999999884 8999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++||+|++.+||.+||.||+.|+.+.+ ..++++.+++++++++.+||.+..|+.+ .+|||||||||
T Consensus 82 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRV 153 (375)
T PRK09452 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRV 153 (375)
T ss_pred CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHH
Confidence 2467999999999999999999999986543 2455666778999999999999888866 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
+|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |.|+|++||++ .++..++|++++|++|+++..|++++.
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999875 99999999997 589999999999999999999998865
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.4e-44 Score=386.11 Aligned_cols=219 Identities=25% Similarity=0.373 Sum_probs=194.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.+||+++..
T Consensus 2 ~L~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEeC-------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 588999999873 356999999999999999999999999999999999999875 8999999998632
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++||+|++.+++.+||.||+.|....+.. ...++++.+++++++++.++|.+..|+++ ..|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHH
Confidence 236799999999999999999999998654211 12345666788999999999998888865 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|++++|++|++++.|++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876 89999999997 5899999999999999999999988653
No 35
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=351.66 Aligned_cols=221 Identities=24% Similarity=0.354 Sum_probs=192.3
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~ 110 (697)
...++.+||++.+ +++++|+|||+.|++++++|+||||||||||||+++..... ++...+|+|.++|+++.
T Consensus 5 ~~~~~~~~l~~yY-------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYY-------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEE-------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc
Confidence 3468999999987 36889999999999999999999999999999999998753 45678999999999863
Q ss_pred c-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 111 V-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 111 ~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
. .++.+|+|+|.+.-|| +|++||+.|+.++.. ..+++.+++|++.|+.-.|- ++.|++- ....+||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~sa~~LS 151 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLH--KSALGLS 151 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhh--CCccCCC
Confidence 2 2578999999999999 899999999988763 22377888999999988874 3444432 2346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||+|||+|||+|+.+|+||+||||||+|||.+..+|-+++.+|++ ..|||++||.+ ....+..|+..++..|+++++
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999984 69999999997 578999999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|+++++
T Consensus 230 g~T~~i 235 (253)
T COG1117 230 GPTDKI 235 (253)
T ss_pred cCHHhh
Confidence 999853
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.6e-43 Score=377.38 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=192.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
+.++++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 3 ~~i~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 72 (303)
T TIGR01288 3 VAIDLVGVSKSYG-------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRA 72 (303)
T ss_pred cEEEEEeEEEEeC-------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccH
Confidence 4689999999873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.++|.+..++.++ .|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv 144 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRL 144 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHH
Confidence 2467999999999999999999998765443 23344555678889999999988888764 7999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999988899999999997 5788999999999999999999988754
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
.
T Consensus 224 ~ 224 (303)
T TIGR01288 224 D 224 (303)
T ss_pred h
Confidence 3
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.8e-44 Score=360.98 Aligned_cols=207 Identities=27% Similarity=0.407 Sum_probs=181.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.+||+++..
T Consensus 2 l~~~~l~~~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 2 IRFEQVSKAYPG-----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGR 73 (216)
T ss_pred eEEEEEEEEecC-----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChh
Confidence 789999998742 1246999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+||.||+.+....+ ....++.+++++++++.+||.+..++.+ ..|||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 145 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQ 145 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHH
Confidence 1356999999999999999999999876543 2234445667889999999988887765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999987899999999997 578889999999999974
No 38
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-43 Score=359.55 Aligned_cols=216 Identities=29% Similarity=0.404 Sum_probs=186.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
++++||++.++. +...+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|+++...++.
T Consensus 1 l~~~~l~~~~~~---~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGG---GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEEEcCC---CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCc
Confidence 468899988742 101257999999999999999999999999999999999998874 89999999987544567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
++||+|++.+++.+||+||+.+....+ ....++..+.++++++.+||.+..++.+ ..||||||||++||++|
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al 146 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHH
Confidence 999999999999999999999876543 2233445567889999999988777765 47999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeec--CCeeeeecChh
Q 046969 196 LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAK 266 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~--~G~iv~~G~~~ 266 (697)
+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|+ +|++++.++.+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999999975 489999999997 47889999999999 79999888754
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=360.46 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=187.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+...
T Consensus 1 i~~~~~~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKYG-------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEEC-------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHH
Confidence 46889998773 356999999999999999999999999999999999998874 8999999987531
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHH
Confidence 1356999999999999999999999876543 2334445667899999999988878766 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|+++..|++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999999886 89999999997 57889999999999999999988764
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=358.89 Aligned_cols=209 Identities=32% Similarity=0.507 Sum_probs=182.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTYG-------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEeC-------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchh
Confidence 46789998763 356999999999999999999999999999999999999874 8999999987632 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHH
Confidence 357999999999999999999999875432 1234455567889999999988877765 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999874 89999999997 5788999999999999998765
No 41
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=363.46 Aligned_cols=218 Identities=23% Similarity=0.368 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRFG-------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEEC-------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCc
Confidence 588999999873 356999999999999999999999999999999999998874 8999999987532
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++|++|++.+++.+||+||+.+....+.. .....++..+.++++++.+||.+..++.+ ..|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHH
Confidence 235699999999999999999999987543211 01123344567889999999988777765 479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999999875 89999999997 578899999999999999999987753
No 42
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=353.96 Aligned_cols=220 Identities=28% Similarity=0.359 Sum_probs=190.5
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..|+.+||++.++.. .....+|+|||+++++||+++|+|+||||||||.++|+|+.++. +|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~---~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~ 75 (252)
T COG1124 2 TLLSVRNLSIVYGGG---KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKK 75 (252)
T ss_pred ceEEEeceEEEecCC---cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccc
Confidence 468999999998631 12236999999999999999999999999999999999999985 9999999987532
Q ss_pred ----CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHH
Q 046969 112 ----DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ----~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGG 184 (697)
.++.+.+|+||+ .+.|..||++.|.-..+. .+.++.+ +++.++++.+||.+ .++++ +.+||||
T Consensus 76 ~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~eLSGG 145 (252)
T COG1124 76 RAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHELSGG 145 (252)
T ss_pred cchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chhcChh
Confidence 357799999997 589999999999877654 2333333 44889999999965 45554 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||++|||||+.+|++|+||||||+||+..+.+|++.|.+++++ |.|.|+++||. ..+..+|||+++|.+|++++.+
T Consensus 146 Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEee
Confidence 999999999999999999999999999999999999999999985 89999999996 5789999999999999999999
Q ss_pred ChhhHHH
Q 046969 264 EAKLAVE 270 (697)
Q Consensus 264 ~~~~~~~ 270 (697)
++.+...
T Consensus 225 ~~~~l~~ 231 (252)
T COG1124 225 PTEELLS 231 (252)
T ss_pred chhhhhc
Confidence 9987654
No 43
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.5e-43 Score=362.26 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=187.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRFG-------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEEC-------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHH
Confidence 46789988763 356999999999999999999999999999999999999874 8999999987632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSS-------MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
.+..++|++|++.+++.+||+||+.+......... ...++..+.++++++.+||++..++.+ +.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCC
Confidence 12459999999999999999999998764331110 013445567889999999988777765 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999999987899999999997 578899999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|++++.
T Consensus 225 ~~~~~~ 230 (236)
T cd03219 225 GTPDEV 230 (236)
T ss_pred cCHHHh
Confidence 988754
No 44
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=362.17 Aligned_cols=216 Identities=30% Similarity=0.456 Sum_probs=194.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.++++|+++.+++ .+.+|+++|+.+++||.++|+||||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYPG------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcCC------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhh
Confidence 5789999998853 268999999999999999999999999999999999999985 899999998743
Q ss_pred --cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 111 --VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 111 --~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
..++.+|||+|++ .++.. ||.|.+.|+.... ..+.++.+++++++++.+|+.+.+++.+ ..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECcccccccC-cHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcce
Confidence 2357899999997 45554 9999999987654 4667789999999999999999988855 68999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||+||.+|+.+|++|+|||||||||+..+..+++.++++..+ |+|+|++||+. ..+.+++|++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999987 79999999996 689999999999999999999998
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
.++.
T Consensus 224 ~~i~ 227 (235)
T COG1122 224 AEIF 227 (235)
T ss_pred HHHh
Confidence 7543
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=384.72 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=193.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAYG-------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEeC-------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 488999999873 356999999999999999999999999999999999999874 8999999998632
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHH
Confidence 2357999999999999999999999986543 2345566678999999999998888866 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.++||++++|++|+++..|++++..
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999997 5789999999999999999999988653
No 46
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=384.37 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=195.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--- 110 (697)
..|+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|+++.
T Consensus 18 ~~l~l~~v~~~~~-------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSFD-------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 3599999999873 356999999999999999999999999999999999999885 899999999863
Q ss_pred cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 111 VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 111 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
..++.+|||+|+..+||.+||.||+.|..+.+ ..++++.+++++++++.+||.+..++.+ ++|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 22467999999999999999999999987643 2456677788999999999998888865 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++ .++..++|++++|++|+++..|++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 89999999997 5899999999999999999999988653
No 47
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3e-43 Score=360.81 Aligned_cols=214 Identities=24% Similarity=0.441 Sum_probs=187.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRYG-------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEeC-------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHh
Confidence 46789998873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++.+ +.|||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999865433 1234445567889999999988777765 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+++|++++|++|++++.|+.++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999999999988899999999997 478999999999999999999987653
No 48
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-43 Score=376.40 Aligned_cols=205 Identities=24% Similarity=0.392 Sum_probs=184.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----CCCeEEEEecCCCCCCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV----DSGVLAYVTQENVLLGTL 129 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~~~~i~yv~Q~~~l~~~l 129 (697)
.+.+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++|+++.. .++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 467999999999999999999999999999999999999884 8999999987632 135699999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046969 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS 209 (697)
Q Consensus 130 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts 209 (697)
||+||+.+.+.++ ..+.++..++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|+|||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999877654 2344555677899999999998888876 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHH
Q 046969 210 GLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVE 270 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~ 270 (697)
|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++..+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999988899999999997 58889999999999999999999887544
No 49
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=379.59 Aligned_cols=218 Identities=28% Similarity=0.414 Sum_probs=191.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++. +...+++|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.++..
T Consensus 2 i~i~~l~~~y~~---~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 2 IELKNISKVFPQ---GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEK 75 (343)
T ss_pred EEEEeEEEEeCC---CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHH
Confidence 789999998742 111357999999999999999999999999999999999999874 8999999998631
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++||+|++.+++.+||+||+.+....+ ..++++.+++++++++.+||.+..++.+ +.|||||||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~q 147 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 1357999999999999999999999876543 2345556678899999999998888765 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 89999999997 5788999999999999999999987
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 227 ~~ 228 (343)
T PRK11153 227 EV 228 (343)
T ss_pred HH
Confidence 65
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.4e-43 Score=355.00 Aligned_cols=209 Identities=25% Similarity=0.423 Sum_probs=183.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++.. .
T Consensus 1 i~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRFG-------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEEC-------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 46889998763 356999999999999999999999999999999999998874 8999999998632 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.+ +.||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999875443 2334555667889999999988888766 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999874 89999999997 5788999999999999999876
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6e-43 Score=372.64 Aligned_cols=216 Identities=27% Similarity=0.420 Sum_probs=192.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLYG-------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEEC-------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChH
Confidence 588999999873 356999999999999999999999999999999999999875 8999999987632
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..|+.++ .|||||||||+
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHH
Confidence 1357999999999999999999999887654 23345556678999999999998888764 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVE 270 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~ 270 (697)
||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++|||+++|++|++++.|+.++...
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999965 79999999997 58999999999999999999999987544
No 52
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-43 Score=359.63 Aligned_cols=218 Identities=28% Similarity=0.408 Sum_probs=188.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .. ..+++|+++|+++++||+++|+||||||||||+++|+|++++. +|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~--~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGD--TG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccC--CC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHH
Confidence 678999988742 00 1137999999999999999999999999999999999999874 8999999998532
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+|++||+.+....+ ....++..+.++++++.+||.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHH
Confidence 1356999999999999999999999876543 1334445667889999999988877765 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|+.+
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 89999999997 5788999999999999999999876
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 227 ~~ 228 (233)
T cd03258 227 EV 228 (233)
T ss_pred HH
Confidence 54
No 53
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-43 Score=354.61 Aligned_cols=209 Identities=31% Similarity=0.534 Sum_probs=183.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CCC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-DSG 114 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-~~~ 114 (697)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.+||+++.. .++
T Consensus 1 l~~~~l~~~~~-------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRFG-------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEEC-------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHc
Confidence 46889998763 356999999999999999999999999999999999998874 8999999987532 245
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+ +.||||||||++||++
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999999876543 2234455667889999999988777765 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999988899999999997 5788899999999999998764
No 54
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=368.64 Aligned_cols=233 Identities=25% Similarity=0.348 Sum_probs=196.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .....+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.++..
T Consensus 2 i~~~~v~~~y~~--~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 2 IKFEKVNYTYQP--NSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred EEEEEEEEEeCC--CCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 789999998852 1111246999999999999999999999999999999999999885 8999999998531
Q ss_pred -----CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCH
Q 046969 112 -----DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -----~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 183 (697)
.++.+|||+|++ .+++ .||.||+.|..... ..++++.++++.++++.+||. +..++.+ +.|||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSg 147 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----FELSG 147 (288)
T ss_pred ccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----ccCCH
Confidence 135699999986 5665 59999999876432 245566777899999999996 4566654 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999988899999999997 5788999999999999999999
Q ss_pred ChhhHH---HHHHhcCCCCCCCC
Q 046969 264 EAKLAV---EFFAEAGFPCPSRR 283 (697)
Q Consensus 264 ~~~~~~---~~f~~~g~~~p~~~ 283 (697)
++++.. +.+...|+.+|...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 227 TPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred CHHHHHcCHHHHHHcCCCCChHH
Confidence 998753 34455677665543
No 55
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-44 Score=348.95 Aligned_cols=220 Identities=24% Similarity=0.441 Sum_probs=196.5
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..|..+||.+++ ++++++++||+.+++||+++++|||||||||.+.++.|+.+++ +|.|.+||.++..
T Consensus 3 ~~L~a~~l~K~y-------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lP 72 (243)
T COG1137 3 STLVAENLAKSY-------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLP 72 (243)
T ss_pred cEEEehhhhHhh-------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCC
Confidence 357778887765 3688999999999999999999999999999999999999986 9999999998742
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.+..+||+||++..|..|||+|||......+.. ...+.+.+.+++++++++.+.+++|++- ..|||||||
T Consensus 73 m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERR 146 (243)
T COG1137 73 MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERR 146 (243)
T ss_pred hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHH
Confidence 134599999999999999999999998887632 2233456667899999999999999875 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+.|||||+.+|+.++||||++|.||-+..+|.++++.|++.|..|++|-|+.. |...+|||.+++++|++.++|.+++
T Consensus 147 R~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 147 RVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHH
Confidence 999999999999999999999999999999999999999999999999999975 8999999999999999999999987
Q ss_pred HHH
Q 046969 268 AVE 270 (697)
Q Consensus 268 ~~~ 270 (697)
+.+
T Consensus 226 i~~ 228 (243)
T COG1137 226 IVN 228 (243)
T ss_pred Hhc
Confidence 643
No 56
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.2e-43 Score=355.14 Aligned_cols=214 Identities=34% Similarity=0.520 Sum_probs=186.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|+++||++.+.. ..+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYKK-----GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeCC-----CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHH
Confidence 468899988732 1267999999999999999999999999999999999999874 8999999998632
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHH
Confidence 2356999999999999999999999876543 2234445567889999999988877765 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999976 59999999998 46788999999999999999998764
No 57
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.9e-43 Score=353.99 Aligned_cols=213 Identities=27% Similarity=0.460 Sum_probs=185.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .. ..+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~--~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRD--VK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCC--CC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHH
Confidence 678999998742 10 1226999999999999999999999999999999999999874 8999999987642
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+ +.||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHH
Confidence 2357999999999999999999999865543 2334556678899999999988887765 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999987899999999997 5788999999999999998764
No 58
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-43 Score=336.08 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=183.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---VD 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~~ 112 (697)
+..+++.+.+.. .=-..+..+++||++||+||||||||||||.|||...|. +|+|++||++.. ..
T Consensus 2 l~L~~V~~~y~~---------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYGH---------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeCc---------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcc
Confidence 345666666532 123567889999999999999999999999999999885 999999999863 33
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
.+-++.++|+..||..|||.+|+.++..-.+ +.+ ++.+++++.++..+||..+.+++.+ +|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHH
Confidence 5679999999999999999999998754221 233 4456789999999999999999765 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+|+.+-+||+||||+|.||+.-+.++...+.+++++ +.|++++||+| +++.+++|+++++++|+|.+.|+.++
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHH
Confidence 9999999999999999999999999999999999975 89999999999 58999999999999999999999875
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=365.27 Aligned_cols=221 Identities=26% Similarity=0.396 Sum_probs=188.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++. .....+.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~--~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYME--GTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCC--CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCc
Confidence 4889999998742 1101257999999999999999999999999999999999999885 9999999998632
Q ss_pred ----CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--cccCccccCccCCCCCHH
Q 046969 112 ----DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH--DCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGG 184 (697)
.++.+|||+|++. .+...||+||+.|..... ..++++..++++++++.+||. +..|+.+ +.||||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgG 148 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGG 148 (287)
T ss_pred cHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHH
Confidence 1357999999863 333579999999875432 345666777899999999997 5666654 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++|||+++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999997 5788899999999999999999
Q ss_pred ChhhHH
Q 046969 264 EAKLAV 269 (697)
Q Consensus 264 ~~~~~~ 269 (697)
++++..
T Consensus 228 ~~~~~~ 233 (287)
T PRK13637 228 TPREVF 233 (287)
T ss_pred CHHHHH
Confidence 988753
No 60
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=358.56 Aligned_cols=218 Identities=31% Similarity=0.436 Sum_probs=184.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYPN------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecCC------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHh
Confidence 467899987631 256999999999999999999999999999999999999874 8999999987532
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRL-----PSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++.+++.+||+||+.+...... ......++..++++++++.+||.+..++.+ ..||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCC
Confidence 13569999999999999999999987542110 001112233466888999999988777755 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999874 89999999997 47888999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 226 ~~~~~~~ 232 (241)
T cd03256 226 DGPPAEL 232 (241)
T ss_pred ecCHHHh
Confidence 9988764
No 61
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8e-43 Score=354.33 Aligned_cols=208 Identities=28% Similarity=0.438 Sum_probs=178.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|+++||++.++. +...+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~---~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGG---GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecC---CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchh
Confidence 468899988742 101257999999999999999999999999999999999999874 8999999987531
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|++.+++.+||+||+.+....+ .....+.++.++++++.+||.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHH
Confidence 1356999999999999999999999876543 1233444567889999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++. +||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 5899999999974 555 9999999999974
No 62
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=9.4e-43 Score=354.64 Aligned_cols=212 Identities=27% Similarity=0.441 Sum_probs=183.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|+++||++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGYG-------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeecC-------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHH
Confidence 46889998763 356999999999999999999999999999999999999874 8999999987532
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL-GLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+|++||+.+...... ..+..+.++++++.+ ++.+..++.+ +.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHH
Confidence 13569999999999999999999998764331 123345567778887 5777677655 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++.
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987889999999997 578899999999999999999987653
No 63
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.8e-43 Score=357.14 Aligned_cols=214 Identities=26% Similarity=0.378 Sum_probs=183.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEecC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL-----SRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~~nG~~~~ 110 (697)
++++||++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++ .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~ 70 (227)
T cd03260 1 IELRDLNVYYG-------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY 70 (227)
T ss_pred CEEEEEEEEcC-------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence 46789998763 356999999999999999999999999999999999998 66 4899999998753
Q ss_pred c-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 111 V-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 111 ~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
. .++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+||.+..++.+. +.+|||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSg 144 (227)
T cd03260 71 DLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSG 144 (227)
T ss_pred hcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCH
Confidence 1 135699999999888 7899999998765431 11223345678899999999877666530 358999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|
T Consensus 145 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 222 (227)
T cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFG 222 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999999999999887 9999999997 4788899999999999999999
Q ss_pred Chhh
Q 046969 264 EAKL 267 (697)
Q Consensus 264 ~~~~ 267 (697)
++++
T Consensus 223 ~~~~ 226 (227)
T cd03260 223 PTEQ 226 (227)
T ss_pred Cccc
Confidence 8754
No 64
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-42 Score=356.60 Aligned_cols=215 Identities=25% Similarity=0.397 Sum_probs=187.7
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHFG-------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEEC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChh
Confidence 68899999873 356999999999999999999999999999999999998874 8999999988532
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+||.||+.+..... .....++..+.+.++++.+||++..|+.+ +.||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHH
Confidence 1356999999999999999999998864211 12334555667889999999988777765 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987899999999997 578889999999999999999987754
No 65
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-42 Score=377.19 Aligned_cols=204 Identities=22% Similarity=0.334 Sum_probs=184.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------CCCeEEEEecCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---------DSGVLAYVTQENV 124 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---------~~~~i~yv~Q~~~ 124 (697)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|+++.. .++.++||+|+..
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 567999999999999999999999999999999999999885 9999999998642 1467999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 046969 125 LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFL 204 (697)
Q Consensus 125 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllL 204 (697)
+++.+||+||+.|...+. ..++++..+++.++++.+||++..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987653 3456677788999999999998888866 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||||+|||+.++..+.+.|+++.++ |+|||++||++ .++.+++|+|++|++|+++..|++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999865 89999999997 5789999999999999999999988653
No 66
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.3e-42 Score=358.32 Aligned_cols=216 Identities=27% Similarity=0.379 Sum_probs=187.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKFH-------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEEC-------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccc
Confidence 488999998873 346999999999999999999999999999999999998874 8999999987531
Q ss_pred ----------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCC
Q 046969 112 ----------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ----------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 181 (697)
.++.++||+|++.+++.+||+||+.+...... ....++..++++++++.+||.+..|+.+ +.|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP-----RRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh-----hhC
Confidence 13469999999999999999999988543211 1234455667889999999988777755 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 225 ~~~~~~~ 231 (250)
T PRK11264 225 QGPAKAL 231 (250)
T ss_pred eCCHHHH
Confidence 9987753
No 67
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=365.15 Aligned_cols=219 Identities=24% Similarity=0.322 Sum_probs=187.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++... + ..+++|+|||+++++||+++|+||||||||||+++|+|+++++ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~-~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYKT-P-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCCC-c-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 478999999985311 0 1256999999999999999999999999999999999999874 8999999997631
Q ss_pred ------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 112 ------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
.++.+|||+|++ .++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++.+ +.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----FELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----ccCC
Confidence 135699999986 455 469999999875432 234556667889999999997 5667755 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++|||+++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 99999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 227 ~g~~~~~ 233 (290)
T PRK13634 227 QGTPREI 233 (290)
T ss_pred ECCHHHH
Confidence 9998765
No 68
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-42 Score=356.97 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=186.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.+||+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 1 IEFENVTKRYGG------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPV 71 (242)
T ss_pred CEEEEEEEEeCC------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChH
Confidence 467899987631 156999999999999999999999999999999999999874 8999999987532
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--ccCccccCccCCCCCHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD--CADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+||+||+.+...++ ....++..+.++++++.+||.+ ..++.+ +.||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qr 143 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQR 143 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHH
Confidence 1356999999999999999999999876543 2334455667889999999985 566654 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999997 47889999999999999999998765
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 223 ~ 223 (242)
T cd03295 223 I 223 (242)
T ss_pred H
Confidence 4
No 69
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=367.64 Aligned_cols=234 Identities=23% Similarity=0.344 Sum_probs=193.8
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
....|+++||++.++. .....+.+|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.++|.++..
T Consensus 18 ~~~~l~~~nl~~~y~~--~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~ 92 (320)
T PRK13631 18 DDIILRVKNLYCVFDE--KQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGD 92 (320)
T ss_pred CCceEEEEeEEEEeCC--CCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccc
Confidence 3456999999998852 1101346999999999999999999999999999999999999885 8999999977521
Q ss_pred ---------------------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-c
Q 046969 112 ---------------------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-D 167 (697)
Q Consensus 112 ---------------------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~ 167 (697)
.++.++||+|++ .+++. ||+||+.|..... ..+.++..++++++++.+||. +
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~ 168 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDS 168 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 135699999986 56664 9999998875422 234556667889999999996 5
Q ss_pred ccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh
Q 046969 168 CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL 247 (697)
Q Consensus 168 ~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l 247 (697)
..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ +++.++
T Consensus 169 ~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~ 242 (320)
T PRK13631 169 YLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEV 242 (320)
T ss_pred HhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHh
Confidence 566644 57999999999999999999999999999999999999999999999987899999999997 468899
Q ss_pred ccceeeecCCeeeeecChhhHH---HHHHhcCCCCC
Q 046969 248 FDDLFLLSGGETVYFGEAKLAV---EFFAEAGFPCP 280 (697)
Q Consensus 248 ~D~v~lL~~G~iv~~G~~~~~~---~~f~~~g~~~p 280 (697)
||++++|++|++++.|++++.. +.+...|...|
T Consensus 243 adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 243 ADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred CCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999999988643 23344555543
No 70
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=361.56 Aligned_cols=215 Identities=25% Similarity=0.365 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYKD------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeCC------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCH
Confidence 5889999998741 356999999999999999999999999999999999999874 8999999998642
Q ss_pred --CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++||+|++. .+...||.||+.|..... ..++++.+++++++++.+||.+..++.+ ..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHH
Confidence 1356999999963 445679999999865432 2345555667889999999988888766 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999987899999999997 57788999999999999999999864
No 71
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.1e-42 Score=350.09 Aligned_cols=206 Identities=26% Similarity=0.415 Sum_probs=179.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYPN------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeCC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHH
Confidence 467899988732 256999999999999999999999999999999999998874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||++..++.+ ++|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHH
Confidence 1356999999999999999999999876543 1234455667889999999988777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999987899999999997 577889999999999974
No 72
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3e-42 Score=352.36 Aligned_cols=221 Identities=45% Similarity=0.725 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--C
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--D 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~ 112 (697)
.+.|+|+++.+++. + ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~--~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNW--N-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeecceeeeecC--c-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHh
Confidence 47899999988531 0 13679999999999999999999999999999999999987211148999999987642 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDG-TILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
++.++|++|++.+++.+||+||+.+......+.....+...+++++ .++.+++.+..++.+ +.|||||||||+|
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 154 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSI 154 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHH
Confidence 4679999999999999999999998765443222222233334555 888899987777655 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998779999999999855799999999999999998875
No 73
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.6e-42 Score=349.56 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=179.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .++.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHH
Confidence 68899999873 1356999999999999999999999999999999999998874 8999999987631
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+||.||+.+....+ ....++.+++++++++.+||.+..++.+ ..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHH
Confidence 1356999999999999999999999876543 1234445567889999999987777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999999987899999999997 57888999999999885
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.8e-42 Score=360.87 Aligned_cols=216 Identities=23% Similarity=0.401 Sum_probs=188.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTRG-------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccCh
Confidence 589999998763 356999999999999999999999999999999999999874 8999999987531
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|+..+++.+||.||+.+...... ..+.++.++.+.++++.+||.+..++.+ ..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHH
Confidence 13469999999999999999999988643221 1234444567888999999998888766 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999875 89999999997 578899999999999999999988
Q ss_pred hhH
Q 046969 266 KLA 268 (697)
Q Consensus 266 ~~~ 268 (697)
++.
T Consensus 229 ~~~ 231 (269)
T PRK11831 229 QAL 231 (269)
T ss_pred HHH
Confidence 754
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.5e-42 Score=358.10 Aligned_cols=217 Identities=30% Similarity=0.399 Sum_probs=184.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.+. .++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.+||+++..
T Consensus 2 l~~~~l~~~~~------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHH
Confidence 67899998763 1356999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccC--C---CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRL--P---SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++.+++.+||+||+.+...... . .....++.+++++++++.+||.+..++.+ ..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCC
Confidence 13569999999999999999999987532100 0 00112334567888999999988777755 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 89999999997 46788999999999999999
Q ss_pred ecChhh
Q 046969 262 FGEAKL 267 (697)
Q Consensus 262 ~G~~~~ 267 (697)
.|++++
T Consensus 227 ~~~~~~ 232 (243)
T TIGR02315 227 DGAPSE 232 (243)
T ss_pred cCCHHH
Confidence 998765
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.7e-42 Score=349.58 Aligned_cols=205 Identities=29% Similarity=0.452 Sum_probs=179.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTYG-------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEEC-------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHH
Confidence 46889998763 356999999999999999999999999999999999999874 9999999987531 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+||+||+.+....+ .. .+++++++++.++|.+..++.+ +.|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999876432 11 1345778899999988877765 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999988899999999997 4788899999999999998765
No 77
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-42 Score=351.38 Aligned_cols=215 Identities=27% Similarity=0.375 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++||++.++. +...+.+|+++|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~---~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQE---GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCC---CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCH
Confidence 4899999998742 101257999999999999999999999999999999999999874 99999999886311
Q ss_pred -------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 113 -------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 113 -------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +.|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 246999999999999999999999875432 2234455667889999999988777765 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.. +|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999976 5899999999974 5554 68999999999998876
Q ss_pred h
Q 046969 265 A 265 (697)
Q Consensus 265 ~ 265 (697)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 4
No 78
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-43 Score=349.21 Aligned_cols=221 Identities=27% Similarity=0.412 Sum_probs=196.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..|+.++|++.+ +.-.+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~F-------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~ 72 (250)
T COG0411 3 PLLEVRGLSKRF-------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLP 72 (250)
T ss_pred ceeeeccceeec-------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCC
Confidence 357889999876 3577999999999999999999999999999999999999995 8999999998642
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhcc--------CCC-CCCHHHHHHHHHHHHHHcCCCcccCccccCccC
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLR--------LPS-SMSKEDIKSHVDGTILELGLHDCADTVIGNWHL 178 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~--------~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 178 (697)
.+..++--+|...+|+.|||.||+..++..+ .+. ....++..+++.++|+.+||.+.+|+..|
T Consensus 73 p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~---- 148 (250)
T COG0411 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG---- 148 (250)
T ss_pred HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh----
Confidence 1345888999999999999999999886643 111 12356678889999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
+||+||||||.|||||+++|++|+||||.+||.+..+.++.+.|+++.++ |.||+++-|+. ..++.+||||++|+.|
T Consensus 149 -~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 149 -NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYG 226 (250)
T ss_pred -cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCC
Confidence 59999999999999999999999999999999999999999999999985 79999999997 5899999999999999
Q ss_pred eeeeecChhhHHH
Q 046969 258 ETVYFGEAKLAVE 270 (697)
Q Consensus 258 ~iv~~G~~~~~~~ 270 (697)
+++.+|+|+++.+
T Consensus 227 ~~IAeG~P~eV~~ 239 (250)
T COG0411 227 EVIAEGTPEEVRN 239 (250)
T ss_pred cCcccCCHHHHhc
Confidence 9999999997643
No 79
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=355.39 Aligned_cols=216 Identities=23% Similarity=0.441 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAYK-------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEeC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 588999998863 356999999999999999999999999999999999999874 8999999987632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+||.||+.+....+. ..+.++.+++++++++.+|+.+..++.+ +.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHH
Confidence 13569999999999999999999988654321 2233455667889999999987776655 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999988899999999997 578899999999999999999988754
No 80
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-42 Score=356.57 Aligned_cols=212 Identities=27% Similarity=0.395 Sum_probs=185.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++.......
T Consensus 2 l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 71 (255)
T PRK11248 2 LQISHLYADYG-------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAE 71 (255)
T ss_pred EEEEEEEEEeC-------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCc
Confidence 68899998873 356999999999999999999999999999999999999874 89999999986433346
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
++|++|++.+++.+||.||+.+....+ ....++..++++++++.+||.+..++.+ ..|||||||||+||++|
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral 143 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARAL 143 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHH
Confidence 899999999999999999998865432 2334455667889999999988777755 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeec--CCeeeeecChh
Q 046969 196 LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAK 266 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~--~G~iv~~G~~~ 266 (697)
+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999865 589999999997 57889999999998 59999887654
No 81
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.4e-42 Score=377.97 Aligned_cols=218 Identities=25% Similarity=0.414 Sum_probs=190.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. .+++|+|+|+.+++||+++|+||||||||||||+|+|++++. +|+|.++|+++..
T Consensus 3 ~L~~~nls~~y~-------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEFG-------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEEC-------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCH
Confidence 589999999873 467999999999999999999999999999999999999884 8999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.+|||+|+..+++.+||+||+.+....+... ....++.+++++++++.+||.+..|+.+ +.||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2467999999999989999999999864321100 0012334567899999999999888866 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|.|||+|+.+|++|+|||||+|||+.++.++++.|++++++|+|||+++|++ +++.++|||+++|++|++++.|++++.
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988899999999997 578899999999999999999999874
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.8e-42 Score=351.57 Aligned_cols=214 Identities=31% Similarity=0.480 Sum_probs=185.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAYG-------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChh
Confidence 67899998873 356999999999999999999999999999999999999874 8999999987532
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
..+.++|++|++.+++.+||+||+.+....+ ....++..+.++++++.+||.+..++.+ ..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHH
Confidence 1246999999999888999999998876543 2334445567889999999988877766 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .+|++++|++|++++.|++++..
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999985 5899999999984 554 59999999999999999877543
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-42 Score=364.66 Aligned_cols=219 Identities=23% Similarity=0.350 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.|+++||++.++. .++....+|+|+|+++++||++||+||||||||||+++|+|.++++ +|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~--~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNK--KLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECC--CCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccc
Confidence 4889999999853 1111246999999999999999999999999999999999999885 899999986531
Q ss_pred -------------------------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Q 046969 111 -------------------------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL 163 (697)
Q Consensus 111 -------------------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l 163 (697)
..++.+|||+|++ .++ ..||+||+.|..... ..++++..++++++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 1135699999985 445 469999999876532 345667778899999999
Q ss_pred CCC-cccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcH
Q 046969 164 GLH-DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSS 242 (697)
Q Consensus 164 gL~-~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~ 242 (697)
||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ +
T Consensus 153 gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~ 226 (305)
T PRK13651 153 GLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-D 226 (305)
T ss_pred CCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-H
Confidence 996 6677755 57999999999999999999999999999999999999999999999988899999999996 5
Q ss_pred HHHHhccceeeecCCeeeeecChhhH
Q 046969 243 EVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 243 ~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++.++|||+++|++|++++.|++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 78899999999999999999998865
No 84
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-42 Score=353.91 Aligned_cols=214 Identities=23% Similarity=0.336 Sum_probs=186.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFYG-------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEEC-------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccc
Confidence 588999999873 356999999999999999999999999999999999999874 899999998752
Q ss_pred -------cCCCeEEEEecCCCCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 111 -------VDSGVLAYVTQENVLLGTLTVRETITYS-AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 111 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
..++.++|++|++.+++.+||.||+.+. .... ....++..+.++++++.+||.+..++.+ +.||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 0135699999999999999999999753 2221 1234445567889999999988777765 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.+++|++++|.+|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999997 477889999999999999999
Q ss_pred cChhh
Q 046969 263 GEAKL 267 (697)
Q Consensus 263 G~~~~ 267 (697)
|++++
T Consensus 223 ~~~~~ 227 (242)
T PRK11124 223 GDASC 227 (242)
T ss_pred CCHHH
Confidence 98764
No 85
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=360.60 Aligned_cols=218 Identities=25% Similarity=0.388 Sum_probs=189.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. . ..+.+|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~---~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE---D-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC---C-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcH
Confidence 5899999998742 1 1246999999999999999999999999999999999999874 9999999998632
Q ss_pred --CCCeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++||+|++ .+++.+||+||+.|..... ..++++..++++++++.+||++..++.+ ..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHH
Confidence 135799999997 4677789999999875432 3456666678899999999998888765 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..||++++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 999999999974 55 5899999999999999999876
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 227 ~~ 228 (279)
T PRK13650 227 LF 228 (279)
T ss_pred HH
Confidence 43
No 86
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-42 Score=347.99 Aligned_cols=207 Identities=31% Similarity=0.494 Sum_probs=180.7
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+. .+.+|+|+|+++++| +++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 1 i~~~~~~~~~~-------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRYG-------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEEC-------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHH
Confidence 46889998763 346999999999999 99999999999999999999999874 8999999987532
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+||.+..++.+ ..|||||||||+|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHH
Confidence 1357999999999999999999999876543 2233445667889999999988777765 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+++|++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999986 59999999997 4678899999999999998765
No 87
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-41 Score=366.88 Aligned_cols=227 Identities=24% Similarity=0.348 Sum_probs=192.9
Q ss_pred cceEEEEEEEEEeccccc------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 046969 33 GTFLVWENLFAVLPNFGN------NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG 106 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~------~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 106 (697)
...|+++||++.+..... ......+|+|||+++++||+++|+|+||||||||+++|+|++++. +|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECC
Confidence 346999999999853110 001357999999999999999999999999999999999999874 89999999
Q ss_pred EecCc--------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccC
Q 046969 107 KKTRV--------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGN 175 (697)
Q Consensus 107 ~~~~~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~ 175 (697)
+++.. .++.++||+|++ .+++.+||.||+.+......+ ..++++.++++.++++.+||. +.+++.
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~--- 158 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY--- 158 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC---
Confidence 98631 135799999997 689999999999987544311 245667778889999999994 455664
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeee
Q 046969 176 WHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 176 ~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+.+|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++ |.|+|++||++ ..+.+++|++++|
T Consensus 159 --p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl 235 (331)
T PRK15079 159 --PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM 235 (331)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4689999999999999999999999999999999999999999999999875 99999999997 5788899999999
Q ss_pred cCCeeeeecChhhHH
Q 046969 255 SGGETVYFGEAKLAV 269 (697)
Q Consensus 255 ~~G~iv~~G~~~~~~ 269 (697)
.+|++++.|++++..
T Consensus 236 ~~G~ive~g~~~~i~ 250 (331)
T PRK15079 236 YLGHAVELGTYDEVY 250 (331)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999987653
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=361.52 Aligned_cols=219 Identities=24% Similarity=0.364 Sum_probs=187.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. .....+.+|+|||+++++||+++|+||||||||||+++|+|.++++ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~--~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQK--GTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECC--CCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 5899999999852 1101356999999999999999999999999999999999999885 8999999988631
Q ss_pred ------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 112 ------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
.++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +..++.+ +.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP-----FQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----ccCC
Confidence 135799999986 4665 49999999875432 234566677889999999996 6677654 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.+++|++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 489999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 227 ~g~~~~~ 233 (286)
T PRK13646 227 QTSPKEL 233 (286)
T ss_pred ECCHHHH
Confidence 9998764
No 89
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.1e-41 Score=352.77 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=184.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc--
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~-- 111 (697)
++++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 2 IEIENLNLFYG-------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred EEEEEEEEEEC-------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 68899998873 346999999999999999999999999999999999998752 1128999999997631
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCCCC
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++.+++ +||.||+.+....+. ..+.++..+.++++++.+||. +..++.+ +.||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 146 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA-----LGLS 146 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCC
Confidence 1357999999999988 999999998765431 123455566788999999997 5556544 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.
T Consensus 147 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNM-QQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987 48999999997 478899999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|++++.
T Consensus 225 ~~~~~~ 230 (247)
T TIGR00972 225 GPTEQI 230 (247)
T ss_pred CCHHHH
Confidence 988754
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.8e-42 Score=347.89 Aligned_cols=207 Identities=27% Similarity=0.394 Sum_probs=181.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChh
Confidence 68899998873 1356999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+|+.+..++.+ ..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHH
Confidence 1356999999999888999999999875443 2334455567888999999988777755 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.+++|++++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999999987889999999997 5788899999999999985
No 91
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=352.58 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++ .+.+|+++|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHYG-------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEeeC-------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCH
Confidence 589999999763 356999999999999999999999999999999999999874 8999999987532
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCcccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL-GLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|+..+++.+||.||+.+..... ..++..+.++++++.+ ++.+..++.+ ..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHH
Confidence 1356999999999999999999998864321 1223344567777777 4766666544 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999988899999999997 57899999999999999999999876
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 224 ~ 224 (237)
T PRK11614 224 L 224 (237)
T ss_pred H
Confidence 5
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-42 Score=360.35 Aligned_cols=213 Identities=23% Similarity=0.337 Sum_probs=184.5
Q ss_pred EEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 046969 37 VWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV----- 111 (697)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----- 111 (697)
..+|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++...
T Consensus 26 ~~~~~~~~~-------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT-------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc-------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhh
Confidence 445666554 3567999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ +.|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHH
Confidence 1246999999999999999999999876433 1234445567889999999988888866 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999865 89999999997 4788999999999999999999877
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 247 ~~ 248 (269)
T cd03294 247 EI 248 (269)
T ss_pred HH
Confidence 54
No 93
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=360.20 Aligned_cols=220 Identities=25% Similarity=0.351 Sum_probs=187.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+.+ .....+.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~--~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSP--GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCC--CCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 5789999998742 1101256999999999999999999999999999999999999885 9999999987531
Q ss_pred ------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 112 ------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..++.+ +.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCC
Confidence 134699999996 355 579999999865432 234556667889999999997 5677765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987899999999997 578899999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|++++..
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9987643
No 94
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=354.29 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++ .+.+|+|+|+.+++||+++|+|||||||||||++|+|.+++. +|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRYG-------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccc
Confidence 389999999873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred ---------------CCCeEEEEecCCCCCCCCCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccc-Ccccc
Q 046969 112 ---------------DSGVLAYVTQENVLLGTLTVRETITYSAH-LRLPSSMSKEDIKSHVDGTILELGLHDCA-DTVIG 174 (697)
Q Consensus 112 ---------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg 174 (697)
.++.++|++|++.+++.+||+||+.+... .. ....++.++++.++++.+||.+.. ++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~- 150 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKYP- 150 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-
Confidence 13569999999999999999999987542 21 123445567788999999998753 5543
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 175 ~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++|||+++|
T Consensus 151 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l 225 (257)
T PRK10619 151 ----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFL 225 (257)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEE
Confidence 58999999999999999999999999999999999999999999999987899999999997 5788899999999
Q ss_pred cCCeeeeecChhhH
Q 046969 255 SGGETVYFGEAKLA 268 (697)
Q Consensus 255 ~~G~iv~~G~~~~~ 268 (697)
++|++++.|++++.
T Consensus 226 ~~G~i~~~~~~~~~ 239 (257)
T PRK10619 226 HQGKIEEEGAPEQL 239 (257)
T ss_pred ECCEEEEeCCHHHh
Confidence 99999999987753
No 95
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.8e-42 Score=346.37 Aligned_cols=201 Identities=30% Similarity=0.419 Sum_probs=172.7
Q ss_pred EEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--cCCCe
Q 046969 38 WENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--VDSGV 115 (697)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~~~ 115 (697)
++||++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++. ..++.
T Consensus 2 ~~~l~~~~~~------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 2 IENISFSYKK------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred cccEEEEeCC------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 5788887631 157999999999999999999999999999999999999874 999999998763 22357
Q ss_pred EEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 116 LAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 116 i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
++|++|++. .+..+||+||+.+..... . . ..++++++++.+||.+..++.+ ..||||||||++||++
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 140 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAA 140 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHH
Confidence 999999974 344679999998865432 1 1 1246788999999998888766 4799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999988899999999997 4788899999999999875
No 96
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-42 Score=355.87 Aligned_cols=208 Identities=25% Similarity=0.331 Sum_probs=182.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+....+
T Consensus 11 ~~l~i~~l~~~~~-------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 11 TPLLLNAVSKRYG-------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAR 80 (257)
T ss_pred CcEEEEEEEEEEC-------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhh
Confidence 3589999999873 356999999999999999999999999999999999999874 899999998764445
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIAL 193 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~ 193 (697)
+.++|++|++.+++.+||+||+.+... . ...++++++++.+||.+..++.+ ..|||||||||+||+
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~lar 146 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQRVALAR 146 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 679999999999998999999987521 0 12356788999999988777765 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 194 EILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 147 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 147 ALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999876 489999999997 4678899999999999999887654
No 97
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=343.22 Aligned_cols=220 Identities=26% Similarity=0.460 Sum_probs=205.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-DS 113 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-~~ 113 (697)
.|++++|++++ +++.+++|+||.++||+|.+++|||||||||.+++|.|+++++ +|+|.++|.+... .+
T Consensus 2 ~L~ie~vtK~F-------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF-------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc-------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhh
Confidence 57889998876 4688999999999999999999999999999999999999985 9999999999753 35
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIAL 193 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~ 193 (697)
.+|||+|.+..|++.+||.|.|.|.|+++ .+++++.++.++.+|+.+++......+| +.||.|++|++.+-.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHH
Confidence 78999999999999999999999999987 6889999999999999999998887766 689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHH
Q 046969 194 EILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFA 273 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~ 273 (697)
+++++|++++||||+|||||.+...+-+.+.+++++|.|||+++|++ +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999997 68999999999999999999999998877553
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=358.69 Aligned_cols=228 Identities=26% Similarity=0.433 Sum_probs=192.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++|+++.++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcc
Confidence 589999999873 1356999999999999999999999999999999999999874 8999999998631
Q ss_pred ----CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 ----DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..|+.+ +.||||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~ 147 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQK 147 (283)
T ss_pred hHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHH
Confidence 1357999999973 234579999999865432 2345555677899999999998887765 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++|||+++|++|++++.|++
T Consensus 148 qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999875 89999999997 567889999999999999999998
Q ss_pred hhHHH---HHHhcCCCCC
Q 046969 266 KLAVE---FFAEAGFPCP 280 (697)
Q Consensus 266 ~~~~~---~f~~~g~~~p 280 (697)
++... .+...+.++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 227 KEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred HHHhcCHHHHHHcCCCCC
Confidence 86543 3334455443
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.3e-41 Score=346.12 Aligned_cols=209 Identities=28% Similarity=0.427 Sum_probs=178.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. +...+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~---~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE---GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC---CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHh
Confidence 678999988742 111356999999999999999999999999999999999999874 9999999987531
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ +.||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHH
Confidence 1146999999999999999999999865432 1233444567889999999988777765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ +.+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999874 899999999974 55 458999999999975
No 100
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7e-42 Score=346.03 Aligned_cols=206 Identities=28% Similarity=0.410 Sum_probs=179.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .+.+|+++|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSFG-------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEEC-------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchh
Confidence 46789998873 356999999999999999999999999999999999999874 8999999987621
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+|+.||+.+..... .....++..++++++++.+|+.+..++.+ +.||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHH
Confidence 1357999999999999999999998864311 12334455667889999999988777765 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999988899999999997 578899999999999974
No 101
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=353.64 Aligned_cols=218 Identities=21% Similarity=0.337 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRFG-------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEEC-------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCH
Confidence 589999999863 357999999999999999999999999999999999999874 8999999997632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-----------C-CCCHHHHHHHHHHHHHHcCCCcccCccccCc
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-----------S-SMSKEDIKSHVDGTILELGLHDCADTVIGNW 176 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----------~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 176 (697)
.+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+||.+..++.+
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 151 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--- 151 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh---
Confidence 123589999999999999999999986432110 0 0011233456788899999988777765
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeec
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|+
T Consensus 152 --~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~ 228 (255)
T PRK11300 152 --GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVN 228 (255)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999876 89999999997 57889999999999
Q ss_pred CCeeeeecChhhH
Q 046969 256 GGETVYFGEAKLA 268 (697)
Q Consensus 256 ~G~iv~~G~~~~~ 268 (697)
+|++++.|++++.
T Consensus 229 ~g~i~~~~~~~~~ 241 (255)
T PRK11300 229 QGTPLANGTPEEI 241 (255)
T ss_pred CCeEEecCCHHHH
Confidence 9999999988754
No 102
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=356.83 Aligned_cols=219 Identities=23% Similarity=0.298 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. .....+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~--~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQA--GTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCC--CCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccc
Confidence 5889999998742 1101246999999999999999999999999999999999999874 8999999987531
Q ss_pred ------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 112 ------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++ .+++ .||+||+.+..... ..+.++..+.++++++.+||. ...++.+ +.||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP-----FELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----ccCC
Confidence 135699999996 4555 69999999865432 233455566788899999997 3556654 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+++|++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999997 578889999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|++++.
T Consensus 227 g~~~~~ 232 (280)
T PRK13649 227 GKPKDI 232 (280)
T ss_pred CCHHHH
Confidence 998765
No 103
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=356.19 Aligned_cols=214 Identities=27% Similarity=0.396 Sum_probs=185.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|+++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 2 LATSDLWFRYQ-------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRG 71 (271)
T ss_pred eEEEEEEEEcC-------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCC
Confidence 78899998863 356999999999999999999999999999999999999874 8999999998631
Q ss_pred ---CCCeEEEEecCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENVL-LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++||+|++.+ +...|+.||+.+..... ....++..+.++++++.+||.+..++.+ ..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 143 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKK 143 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHH
Confidence 13569999999753 34558999998865432 2334455567888999999988877765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987799999999997 57889999999999999999999876
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 223 ~ 223 (271)
T PRK13638 223 V 223 (271)
T ss_pred H
Confidence 4
No 104
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-41 Score=350.38 Aligned_cols=218 Identities=28% Similarity=0.380 Sum_probs=183.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc--
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~-- 111 (697)
|+++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+. ++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~ 70 (243)
T TIGR01978 1 LKIKDLHVSVE-------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELE 70 (243)
T ss_pred CeEeeEEEEEC-------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCC
Confidence 46889998873 356999999999999999999999999999999999995 44 48999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC---C-CCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP---S-SMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---~-~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
.+..++|++|++.+++.+|++|++.+....... . ..+.++..++++++++.+||. +..++.++ .+||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS 146 (243)
T TIGR01978 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFS 146 (243)
T ss_pred HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcC
Confidence 123489999999999999999999886543211 0 112344456788999999997 45666543 2599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh-ccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL-FDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~iv~ 261 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++... ||++++|++|++++
T Consensus 147 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999988899999999997 467777 89999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 226 ~g~~~~~ 232 (243)
T TIGR01978 226 SGDVELA 232 (243)
T ss_pred ecCHHHh
Confidence 9988743
No 105
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-41 Score=350.40 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=185.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++..
T Consensus 3 i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 3 LYLEGLSVSFD-------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred EEEEeeEEEcC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 78999998763 356999999999999999999999999999999999998874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC--C---CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP--S---SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.+ +.||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 147 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHG 147 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 124699999999999999999999986432100 0 0112344567889999999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 79999999997 57889999999999999999998
Q ss_pred hhhH
Q 046969 265 AKLA 268 (697)
Q Consensus 265 ~~~~ 268 (697)
+++.
T Consensus 226 ~~~~ 229 (242)
T TIGR03411 226 LDQV 229 (242)
T ss_pred HHHH
Confidence 7653
No 106
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=353.29 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=183.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV--IMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~ 111 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++.. ..+|+|.++|+++..
T Consensus 11 ~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 11 PQIKVENLNLWYG-------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred eeEEEeeeEEEeC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 3689999999763 3569999999999999999999999999999999999986410 148999999987531
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCC
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRG 180 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~ 180 (697)
.++.++|++|++.+++ +||+||+.+....+ ..+.++.++.++++++.+|+. +..++.+ ..
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~ 154 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-----LS 154 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-----hh
Confidence 1356999999998888 89999999875432 233444556788899999984 3345443 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|+++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELI 232 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 79999999997 5788899999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
+.|++++.
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK14268 233 EFGQTRQI 240 (258)
T ss_pred EeCCHHHH
Confidence 99988754
No 107
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=356.39 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+.. ..+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYPD-----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeCC-----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcH
Confidence 4899999998742 2356999999999999999999999999999999999999885 9999999998632
Q ss_pred --CCCeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++ .++..+||.||+.+..... ..+.++..++++++++.+||.+..++.+ ..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 135699999997 3667789999999875443 2345555677899999999998888766 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 899999999974 554 599999999999999999876
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 227 ~~ 228 (279)
T PRK13635 227 IF 228 (279)
T ss_pred Hh
Confidence 53
No 108
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=353.57 Aligned_cols=215 Identities=31% Similarity=0.420 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRLG-------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEeC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCH
Confidence 478999998873 356999999999999999999999999999999999998874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++.+||+||+.+..... ....++..+.++++++.+||.+..++.+ ..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHH
Confidence 1356999999998888899999999864321 1122334456888999999988777766 47999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 190 SIALEIL------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIA-RDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 190 sIa~~Ll------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la-~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++ .++.++||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 5689999999997 578889999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|++++.
T Consensus 223 ~~~~~~ 228 (258)
T PRK13548 223 GTPAEV 228 (258)
T ss_pred CCHHHH
Confidence 987754
No 109
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.9e-41 Score=352.00 Aligned_cols=215 Identities=24% Similarity=0.332 Sum_probs=186.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRFG-------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEeC-------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 46899999873 356999999999999999999999999999999999999874 8999999987521
Q ss_pred --------------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCcc
Q 046969 112 --------------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWH 177 (697)
Q Consensus 112 --------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 177 (697)
.++.++|++|++.+++.+||.||+.+..... .....++..+.++++++.+|+.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 144 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP---- 144 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh----
Confidence 1356999999999999999999998864321 12234455667889999999988777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.+++|++++|++
T Consensus 145 -~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 145 -AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDK 222 (252)
T ss_pred -hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEEC
Confidence 579999999999999999999999999999999999999999999999875 89999999997 578889999999999
Q ss_pred CeeeeecChhhH
Q 046969 257 GETVYFGEAKLA 268 (697)
Q Consensus 257 G~iv~~G~~~~~ 268 (697)
|++++.|+.++.
T Consensus 223 G~i~~~g~~~~~ 234 (252)
T TIGR03005 223 GRIVEQGKPDEI 234 (252)
T ss_pred CEEEEeCCHHHH
Confidence 999999987643
No 110
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.5e-42 Score=344.72 Aligned_cols=204 Identities=30% Similarity=0.460 Sum_probs=174.5
Q ss_pred EEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 046969 38 WENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----D 112 (697)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~ 112 (697)
++|+++.+.. ..+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.+||+++.. .
T Consensus 2 ~~~l~~~~~~-----~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 2 LKNLSFSYPD-----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred ceeEEEecCC-----CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHH
Confidence 5788887631 1257999999999999999999999999999999999999874 8999999987532 1
Q ss_pred CCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 113 SGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 113 ~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
++.++|++|++. .++.+||+||+.+....+ ....++.++.++++++.+||.+..++.+ ..|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~l 145 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAI 145 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHH
Confidence 356999999974 366789999998865432 1234445567889999999987777765 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999988899999999997 57888999999999885
No 111
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-42 Score=338.90 Aligned_cols=215 Identities=28% Similarity=0.445 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.| ...++|++||+++++||+++|+|+||||||||||+|+|..++. +|+|.++|+++..
T Consensus 3 mL~v~~l~~~Y-------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY-------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc-------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCH
Confidence 58899999876 2578999999999999999999999999999999999999874 8999999999742
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCcccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL-GLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.+..++||||...+|+.|||+|||..++..+.. ++..+..++++.+.| .|.+.++++-| .|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHH
Confidence 145699999999999999999999988765421 112222266666666 46777787776 69999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
-++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-++. ....+++||.++|.+|+++++|+++
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 78999998774 6789999999999999999999988
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+..
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 754
No 112
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2e-41 Score=346.13 Aligned_cols=215 Identities=27% Similarity=0.388 Sum_probs=177.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.+.. .. ....+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~--~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPT--GG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccC--CC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchh
Confidence 678999988742 00 1136999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHH
Q 046969 112 ----DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ----~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 184 (697)
.++.++|++|++ .+++.+||+||+.+......+. ...+..+..++++++.+++. +..++.+ ..||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 149 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGG 149 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHH
Confidence 135799999998 5677899999998875443211 11112222235788999995 5666655 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999999876 89999999997 4777899999999999998764
No 113
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=371.13 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=180.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------CCCeEEEEecCCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---------DSGVLAYVTQENVL 125 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---------~~~~i~yv~Q~~~l 125 (697)
..+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.+||+++.. .++.++||+|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 35899999999999999999999999999999999999884 8999999998631 12469999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 046969 126 LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLD 205 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLD 205 (697)
++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999986643 2344556677899999999998888765 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 206 EPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 206 EPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999986 489999999997 578899999999999999999988764
No 114
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=357.04 Aligned_cols=214 Identities=26% Similarity=0.379 Sum_probs=186.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++ ..+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 2 IRLENVSYSYP------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKL 72 (274)
T ss_pred EEEEEEEEEcC------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccH
Confidence 68899999873 1356999999999999999999999999999999999999874 8999999998631
Q ss_pred --CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++. .+..+||.||+.+..... ..+.++..+.++++++.+||.+..++.+ +.||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qr 144 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQC 144 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHH
Confidence 1356999999975 366689999999875432 2345566677889999999998888765 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ..||++++|++|++++.|++++.
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999878999999999974 56 67999999999999999998764
No 115
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.9e-41 Score=362.51 Aligned_cols=228 Identities=23% Similarity=0.344 Sum_probs=192.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..|+++||++.+.. .+ ....+|+|||+++++||+++|+|+||||||||+++|+|++++....+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~--~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 11 ALLDVKDLRVTFST--PD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred ceEEEeCeEEEEec--CC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 36999999998853 11 23569999999999999999999999999999999999998742348999999998631
Q ss_pred -------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 112 -------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
..+.++||+|++ .+.+.+|+.+++........ ..+.++..+++.++++.+||.+..+. . +..+++||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LS 163 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFS 163 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCC
Confidence 124799999998 68899999999987654431 24556667788999999999753322 2 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||+||+||+.+|++|++||||+|||..++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|.+|++++
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 99999999997 47788999999999999999
Q ss_pred ecChhhHH
Q 046969 262 FGEAKLAV 269 (697)
Q Consensus 262 ~G~~~~~~ 269 (697)
.|++++..
T Consensus 243 ~g~~~~i~ 250 (330)
T PRK09473 243 YGNARDVF 250 (330)
T ss_pred ECCHHHHH
Confidence 99988653
No 116
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.9e-42 Score=346.86 Aligned_cols=209 Identities=29% Similarity=0.455 Sum_probs=174.3
Q ss_pred EEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEE
Q 046969 38 WENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLA 117 (697)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~ 117 (697)
++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++...++.++
T Consensus 2 ~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYG-------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIG 71 (213)
T ss_pred cccceeEEC-------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheE
Confidence 567887763 356999999999999999999999999999999999999874 8999999987543345799
Q ss_pred EEecCCCCC--CCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 118 YVTQENVLL--GTLTVRETITYSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 118 yv~Q~~~l~--~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
|++|++.+. ..+||+||+.+........ ....++.+++++++++.+|+.+..++.+ ..||||||||++||++
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~a 146 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARA 146 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 999998763 3479999998864321100 0112334567889999999987777765 4799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999987899999999997 5788999999999876 55554
No 117
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-41 Score=353.07 Aligned_cols=216 Identities=30% Similarity=0.466 Sum_probs=186.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYPD------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeCC------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccch
Confidence 689999998731 346999999999999999999999999999999999999874 8999999988631
Q ss_pred ---CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.+ +.|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~q 144 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKK 144 (275)
T ss_pred HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHH
Confidence 1356999999963 333469999998764321 2345555677889999999998888866 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987799999999997 57888999999999999999999887
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 224 ~~ 225 (275)
T PRK13639 224 VF 225 (275)
T ss_pred Hh
Confidence 53
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-41 Score=353.81 Aligned_cols=217 Identities=30% Similarity=0.433 Sum_probs=188.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYSG------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeCC------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 4789999998741 345999999999999999999999999999999999999874 9999999997632
Q ss_pred --CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++||+|++. .+...||.||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qr 145 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKR 145 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHH
Confidence 1356999999973 333579999998865432 2345555677899999999998888866 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999999999999875 89999999997 57889999999999999999999886
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 225 ~~ 226 (277)
T PRK13652 225 IF 226 (277)
T ss_pred Hh
Confidence 53
No 119
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=350.17 Aligned_cols=218 Identities=23% Similarity=0.303 Sum_probs=183.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV--IMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~ 111 (697)
..++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++.. ..+|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 6 AIIETENLNLFYT-------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred ceEEEeeeEEEeC-------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 3689999999873 3569999999999999999999999999999999999987521 238999999987521
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCC
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRG 180 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~ 180 (697)
.++.++|++|++.+++ +||+||+.+...... ....++.++.++++++.+++. +..++. ++.
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~ 150 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN-----ALS 150 (254)
T ss_pred ccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC-----ccc
Confidence 1356999999988885 899999998754321 123344566788888988873 344554 458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||+++|++ +++.+++|++++|++|+++
T Consensus 151 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999964 79999999997 4788999999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
..|++++.
T Consensus 229 ~~g~~~~~ 236 (254)
T PRK14273 229 EESSTDEL 236 (254)
T ss_pred EeCCHHHH
Confidence 99998764
No 120
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-41 Score=351.18 Aligned_cols=228 Identities=21% Similarity=0.318 Sum_probs=191.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~-----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQS-----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcCC-----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 5899999998742 1246999999999999999999999999999999999999874 8999999987632
Q ss_pred --CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++. +++..|+.+|+.+..... ....++..+.++++++.+|+.+..|+.+ +.||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHH
Confidence 1356999999974 677789999998875432 2334555667889999999988777755 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. +|++++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 899999999984 5654 99999999999999999876
Q ss_pred HHH---HHHhcCCCCC
Q 046969 268 AVE---FFAEAGFPCP 280 (697)
Q Consensus 268 ~~~---~f~~~g~~~p 280 (697)
..+ .+...|.++|
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 229 IFDHAEELTRIGLDLP 244 (269)
T ss_pred HhcCHHHHHhcCCCCC
Confidence 432 3344454443
No 121
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.3e-41 Score=367.59 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=182.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----cCc---------CCCeEEEE
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK----TRV---------DSGVLAYV 119 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~----~~~---------~~~~i~yv 119 (697)
+...+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++ +.. .++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467899999999999999999999999999999999999884 8999999963 210 12579999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 046969 120 TQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKP 199 (697)
Q Consensus 120 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P 199 (697)
+|+..+++.+||+||+.|....+ ..++++.+++++++++.+||.+..|+.+ ..|||||||||+|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999986543 2445666778899999999998888866 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 200 QLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 200 ~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|++++..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 99999999997 5788999999999999999999988653
No 122
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=352.36 Aligned_cols=220 Identities=26% Similarity=0.418 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.+++....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 4 IIRVEKLAKTFN-------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred EEEEeeEEEEeC-------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 589999999873 3579999999999999999999999999999999999988742236999999987531
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCcccCccccCccCC
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS-----SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLR 179 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 179 (697)
.++.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..|+.+ .
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 151 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----S 151 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 1346999999999999999999998764211000 0112334567889999999988777765 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGH 230 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999864 89999999997 46889999999999999
Q ss_pred eeeecChhh
Q 046969 259 TVYFGEAKL 267 (697)
Q Consensus 259 iv~~G~~~~ 267 (697)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (262)
T PRK09984 231 VFYDGSSQQ 239 (262)
T ss_pred EEEeCCHHH
Confidence 999998764
No 123
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.5e-41 Score=351.99 Aligned_cols=223 Identities=25% Similarity=0.330 Sum_probs=186.6
Q ss_pred eEEEEEEEEEecccc--ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFG--NNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~--~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.++... ....++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 378999999874210 0001467999999999999999999999999999999999999874 8999999987531
Q ss_pred -------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 112 -------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
.++.++|++|++ .+++.+||+||+.+..... .....++..++++++++.+||. +..++.+ +.|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----RQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhC
Confidence 134699999996 4677899999998764321 1123334456788999999996 5667655 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999875 89999999997 5788899999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
+.|++++.
T Consensus 231 ~~g~~~~~ 238 (265)
T TIGR02769 231 EECDVAQL 238 (265)
T ss_pred EECCHHHH
Confidence 99998754
No 124
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-41 Score=351.62 Aligned_cols=218 Identities=27% Similarity=0.416 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGYG-------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEEC-------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCH
Confidence 588999999763 357999999999999999999999999999999999998874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|+..+++.+|+.||+.++...... .....++..+.++++++.+||.+..++.+ +.||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHH
Confidence 134699999999888899999999885321000 01112233556888999999988777765 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999999999999999999999999987899999999997 578899999999999999999987754
No 125
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=349.00 Aligned_cols=219 Identities=24% Similarity=0.345 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR-- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~-- 110 (697)
.|+++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++++ ...+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 4 AIETVNLRVYYG-------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred eEEEEeEEEEeC-------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 588999999873 356999999999999999999999999999999999998762 124899999998763
Q ss_pred -c----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 111 -V----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 111 -~----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
. .++.++|++|++.+++.+||.||+.+....+. .....++..+.++++++.+||.+ ..++ .+..|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 150 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLND-----YPSNL 150 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhcc-----ChhhC
Confidence 1 13569999999999999999999998754321 01133445567888999999853 3344 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++
T Consensus 151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 69999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 229 ~~~~~~~ 235 (253)
T PRK14267 229 VGPTRKV 235 (253)
T ss_pred eCCHHHH
Confidence 9998754
No 126
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.5e-41 Score=342.93 Aligned_cols=208 Identities=29% Similarity=0.419 Sum_probs=182.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-CC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-SG 114 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-~~ 114 (697)
|+++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++.... .+
T Consensus 1 l~l~~v~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFG-------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEEC-------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccc
Confidence 46789988763 356999999999999999999999999999999999999874 89999999876422 25
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
.++|++|++.+++.+|++||+.+....+. .. .+.+.++++.+||++..|+.+ ..||||||||++||++
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHH
Confidence 79999999999999999999988765431 11 235678889999998877765 4799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
++.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++.
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999987899999999997 5788999999999999999999865
No 127
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-41 Score=347.91 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 3 KIEIRDLKVSFG-------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred eEEEEeeEEEEC-------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 488999998763 356999999999999999999999999999999999998641 1248999999997531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCCCH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGISG 183 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 183 (697)
.++.++|++|++.+++.+||.||+.+....+.. ....++..+.++++++.+||.+ ..|+. +..|||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSg 149 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----AGKLSG 149 (250)
T ss_pred CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----cccCCH
Confidence 235799999999889999999999987543211 1133455567889999999864 34444 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999999999999865 89999999997 4788899999999999999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK14247 228 PTREV 232 (250)
T ss_pred CHHHH
Confidence 88754
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-41 Score=352.99 Aligned_cols=217 Identities=24% Similarity=0.375 Sum_probs=187.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++|+++.+++ ..+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.+||+++..
T Consensus 6 ~~l~~~nl~~~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYPN-----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcCC-----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCC
Confidence 36899999998742 2457999999999999999999999999999999999999874 8999999998632
Q ss_pred ---CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++. .++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +.|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHH
Confidence 1456999999974 677789999999865432 2344555667899999999988888765 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999876 599999999984 45 479999999999999999877
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 228 ~~ 229 (271)
T PRK13632 228 EI 229 (271)
T ss_pred HH
Confidence 54
No 129
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.7e-41 Score=346.07 Aligned_cols=211 Identities=24% Similarity=0.357 Sum_probs=180.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|+++||++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYYG-------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEeC-------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 46889998873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-LHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+|+.||+.+....+. ... .+.++++++.++ +.+..++.+ +.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~---~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RRS---RKIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cch---HHHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHH
Confidence 13469999999999999999999998754321 111 233566777776 566666655 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 89999999997 57888999999999999999998875
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 4
No 130
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-41 Score=358.96 Aligned_cols=224 Identities=22% Similarity=0.284 Sum_probs=190.9
Q ss_pred eEEEEEEEEEeccccc---cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 35 FLVWENLFAVLPNFGN---NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~---~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
.|+++||++.+..... ....+.+|+|||+++++||++||+|+||||||||+++|+|++++. +|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 5899999999853110 001357999999999999999999999999999999999999874 8999999998531
Q ss_pred --------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCC
Q 046969 112 --------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRG 180 (697)
Q Consensus 112 --------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~ 180 (697)
.++.++||+|++ .+.+.+||.+++........ ...+++.++++.++++.+||.+ ..++.+ +.
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP-----HM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----cc
Confidence 135799999997 68999999999987654321 2345666778999999999963 556654 68
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|||||||||+||+||+.+|++|++||||+|||..++.++++.|++++++ |.|+|++||+. ..+.+++|++++|.+|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 99999999997 577889999999999999
Q ss_pred eeecChhhHH
Q 046969 260 VYFGEAKLAV 269 (697)
Q Consensus 260 v~~G~~~~~~ 269 (697)
++.|++++..
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988653
No 131
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-41 Score=352.64 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=188.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPD-----SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCC-----CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 5899999998742 13569999999999999999999999999999999999998752123999999998642
Q ss_pred --CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.+||++|++. +++..||.||+.|....+ ..+.++..++++++++.+||.+..++.+ +.||||||||
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qr 151 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQR 151 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHH
Confidence 1356999999974 677789999998865432 2456666778899999999998777765 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ ..||++++|++|++++.|++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 899999999984 55 5799999999999999999876
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 230 ~~ 231 (282)
T PRK13640 230 IF 231 (282)
T ss_pred Hh
Confidence 53
No 132
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8e-41 Score=342.11 Aligned_cols=211 Identities=28% Similarity=0.379 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.|+++||++.+.+ +...+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~---~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQ---GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccC---CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCH
Confidence 5899999998742 101135999999999999999999999999999999999999874 89999999875321
Q ss_pred -------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 113 -------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 113 -------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
++.++|++|++.+++.+||.||+.+....+ ....++.+++++++++.+||.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge 151 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGE 151 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHH
Confidence 246999999999999999999998865432 1234455677899999999988777765 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.+|++++|++|++++
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999765 899999999974 55 5699999999999875
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-41 Score=340.45 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=177.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++|+++.+. .+. .|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++.. .
T Consensus 1 i~~~~l~~~~~-------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG-------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC-------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHh
Confidence 46889998763 122 3999999999999999999999999999999999874 8999999997632 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+||+||+.+....+. .. .++.+++++++++.+||.+..++.+ ..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHH
Confidence 3569999999999999999999987643211 11 1234556889999999988777765 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999864 89999999997 5788999999999999998754
No 134
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-41 Score=343.10 Aligned_cols=214 Identities=27% Similarity=0.418 Sum_probs=187.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++||++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~-------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFYG-------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEeC-------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChh
Confidence 46889998763 356999999999999999999999999999999999999874 8999999997632 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+|+.||+.+....+ ....+...+.++++++.+||.+..++.+ ..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHH
Confidence 467999999999999999999999876543 1233445567888999999988888765 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999875 89999999997 578899999999999999999987643
No 135
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-41 Score=350.26 Aligned_cols=225 Identities=26% Similarity=0.365 Sum_probs=194.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEecC---
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS-R-HVIMTGNVLFNGKKTR--- 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~-~-~~~~~G~I~~nG~~~~--- 110 (697)
|+++||++.++... ...++++||||++++||++||+|.|||||||+.++|.|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f~~~~---g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 2 LEVKNLSVSFPTDA---GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred ceEeeeEEEEecCC---ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 78999999986411 24679999999999999999999999999999999999997 3 4467899999999641
Q ss_pred ------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHcCCCcccCccccCccCCCC
Q 046969 111 ------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSM-SKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181 (697)
Q Consensus 111 ------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 181 (697)
.+.+.|+||+|++ .|.|.+||.+.+.-...... .. ++++.++++.++++.+||.+... +-+.++.+|
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhel 154 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHEL 154 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCccc
Confidence 1246799999996 68999999999887766432 22 46677889999999999986432 224477899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
||||||||.||.||+.+|++|+.||||++||...+.+|++.|+++++ .|.++|++|||. ..+.++||||++|..|++|
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999998 599999999997 5799999999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
+.|++++.
T Consensus 234 E~g~~~~i 241 (316)
T COG0444 234 EEGPVEEI 241 (316)
T ss_pred EeCCHHHH
Confidence 99999854
No 136
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-41 Score=347.03 Aligned_cols=222 Identities=21% Similarity=0.285 Sum_probs=182.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~ 111 (697)
-.++++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 5 PKMEARGLSFFYG-------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred cEEEEeeeEEEEC-------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 3589999999873 3469999999999999999999999999999999999864 101148999999987631
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.++|++|++.+++ .||+||+.+....+. ....++.+++++++++.+|+.+...+.. +..++.||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 153 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGG 153 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 1357999999998888 499999998754331 1123344567888899999854221111 1234689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.+++|++++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999954 79999999997 57889999999999999999998
Q ss_pred hhhH
Q 046969 265 AKLA 268 (697)
Q Consensus 265 ~~~~ 268 (697)
+++.
T Consensus 232 ~~~~ 235 (253)
T PRK14242 232 TEQI 235 (253)
T ss_pred HHHH
Confidence 7653
No 137
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=358.34 Aligned_cols=224 Identities=22% Similarity=0.307 Sum_probs=188.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecCc--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV-IMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~-- 111 (697)
.|+++||++.++. .+ ...++|+||||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~--~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 3 LLNVDKLSVHFGD--ES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred eEEEeCeEEEECC--CC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 5899999999853 11 12569999999999999999999999999999999999986421 248999999998531
Q ss_pred -------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccCccccCccCC
Q 046969 112 -------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD---CADTVIGNWHLR 179 (697)
Q Consensus 112 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~ 179 (697)
.++.++||+|++ .+.|.+||.+++........ ....++.++++.++++.+||.+ ..++ +++
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~-----~p~ 152 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV-----YPH 152 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC-----Cch
Confidence 124699999998 58899999999877654321 2345666778999999999975 2344 456
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
+|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++++ .|.|+|++||++ ..+.+++|+|++|.+|+
T Consensus 153 ~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ 231 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQ 231 (326)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999987 499999999997 46788999999999999
Q ss_pred eeeecChhhHH
Q 046969 259 TVYFGEAKLAV 269 (697)
Q Consensus 259 iv~~G~~~~~~ 269 (697)
+++.|++++..
T Consensus 232 ive~g~~~~~~ 242 (326)
T PRK11022 232 VVETGKAHDIF 242 (326)
T ss_pred EEEECCHHHHh
Confidence 99999988654
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.9e-41 Score=349.24 Aligned_cols=217 Identities=28% Similarity=0.409 Sum_probs=184.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSAG-------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEEC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHH
Confidence 67899998873 356999999999999999999999999999999999999874 8999999987532
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++.+||+||+.+....... .....++..+++.++++.+|+.+..++.+ ..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHH
Confidence 134699999998888889999999885321000 00111233456888999999988778766 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
+||++|+.+|++++|||||+|||+.+...+.+.|++++++|.|||+++|++ +++.++||++++|++|++++.|+.++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999999999999999999987799999999998 478899999999999999999987754
No 139
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-41 Score=352.38 Aligned_cols=220 Identities=23% Similarity=0.360 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~-~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCCC-CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccc
Confidence 5899999999853111 01356999999999999999999999999999999999999874 8999999988631
Q ss_pred ---CCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 ---DSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|++. ++ ..||.|++.|..... ..+.++.+++++++++.+||.+..++.+ +.||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHH
Confidence 1457999999974 44 469999999875432 2345566677899999999998888866 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999874 999999999985 5554 999999999999999998
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
++..
T Consensus 229 ~~~~ 232 (280)
T PRK13633 229 KEIF 232 (280)
T ss_pred HHHh
Confidence 8653
No 140
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.1e-41 Score=344.36 Aligned_cols=214 Identities=27% Similarity=0.427 Sum_probs=187.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++.. .
T Consensus 1 i~i~~l~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRFG-------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEEC-------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChh
Confidence 46889998873 356999999999999999999999999999999999998874 8999999988642 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+|+.||+.+....+ ..+..+..+.++++++.+++.+..++.+ +.|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHH
Confidence 357999999999999999999999876543 1233444567789999999987777765 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++|+.+|++++|||||+|||..++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999876 89999999997 578899999999999999999987754
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-41 Score=350.88 Aligned_cols=218 Identities=27% Similarity=0.372 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRVP-------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEEC-------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCH
Confidence 589999998873 357999999999999999999999999999999999998874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|+..+++.+||.||+.+........ .....+..++++++++.++|.+..++.+ +.||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHH
Confidence 1356999999988889999999998753211000 0111233456888999999988777766 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999997 57889999999999999999998765
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 235 ~ 235 (265)
T PRK10575 235 L 235 (265)
T ss_pred h
Confidence 3
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=350.35 Aligned_cols=220 Identities=24% Similarity=0.355 Sum_probs=187.5
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
...|+++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~ 74 (265)
T PRK10253 5 VARLRGEQLTLGYG-------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHY 74 (265)
T ss_pred ccEEEEEEEEEEEC-------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhC
Confidence 34789999999873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|++.+++.+||+||+.+...-..+ .....+...+.++++++.+||.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~ 149 (265)
T PRK10253 75 ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGGQR 149 (265)
T ss_pred CHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChHHH
Confidence 134699999999999999999999875311100 00011233456888999999988777765 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAP 228 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999874 89999999997 578999999999999999999998
Q ss_pred hhH
Q 046969 266 KLA 268 (697)
Q Consensus 266 ~~~ 268 (697)
++.
T Consensus 229 ~~~ 231 (265)
T PRK10253 229 KEI 231 (265)
T ss_pred HHH
Confidence 764
No 143
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=346.80 Aligned_cols=220 Identities=23% Similarity=0.319 Sum_probs=184.4
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEec
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKT 109 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~ 109 (697)
....++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ +....+|+|.++|+++
T Consensus 10 ~~~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CCceEEEEEEEEEeC-------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 344689999999873 3469999999999999999999999999999999999985 2112489999999875
Q ss_pred Cc-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccC
Q 046969 110 RV-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHL 178 (697)
Q Consensus 110 ~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~ 178 (697)
.. .++.++|++|+..+++ .||+||+.+...... ..+.++..++++++++.+++.+ ..++. +
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 154 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-----G 154 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-----C
Confidence 31 1357999999998887 799999998754321 2344555667889999999843 33443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+++|++++|++|+
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGE 232 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999964 78999999997 57888999999999999
Q ss_pred eeeecChhhH
Q 046969 259 TVYFGEAKLA 268 (697)
Q Consensus 259 iv~~G~~~~~ 268 (697)
++..|++++.
T Consensus 233 i~~~g~~~~~ 242 (260)
T PRK10744 233 LIEFGNTDTI 242 (260)
T ss_pred EEEeCCHHHH
Confidence 9999988754
No 144
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=344.42 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=183.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++ +....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 4 KVKLEQLNVHFG-------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred EEEEEEEEEEeC-------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 379999999873 3569999999999999999999999999999999999985 311248999999987531
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|+..+++.+||+||+.+..... .....++.+++++++++.+|+.+ ..++ .++.|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 149 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKS-----NAMEL 149 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhC-----CcCcC
Confidence 1456999999999999999999998765432 11233444567888999999864 2333 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++.
T Consensus 150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 68999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 228 ~~~~~~~ 234 (252)
T PRK14256 228 CGETKKI 234 (252)
T ss_pred eCCHHHH
Confidence 9988753
No 145
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=346.75 Aligned_cols=218 Identities=22% Similarity=0.337 Sum_probs=183.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~ 111 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.++ +....+|+|.++|+++..
T Consensus 11 ~~l~i~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 11 EVYQINGMNLWYG-------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred ceEEEeeEEEEEC-------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 4689999999873 3569999999999999999999999999999999999986 321248999999997531
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCC
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRG 180 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~ 180 (697)
.++.++|++|++.+++. ||+||+.+....+. ...+++..++++++++.+++.+ ..++ .+++
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-----~~~~ 155 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-----QALS 155 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-----Cccc
Confidence 13569999999988886 99999998754321 1233455567888899999854 2344 3468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELV 233 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 79999999997 5788999999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
..|++++.
T Consensus 234 ~~g~~~~~ 241 (259)
T PRK14274 234 ECNDTNKM 241 (259)
T ss_pred EECCHHHH
Confidence 99998754
No 146
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.5e-41 Score=344.17 Aligned_cols=199 Identities=32% Similarity=0.460 Sum_probs=173.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITY 137 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 137 (697)
|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++.......+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999999874 899999999864322235899999999999999999988
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046969 138 SAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAF 217 (697)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~ 217 (697)
......+ ...+++.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6431111 2334455667889999999988777765 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 218 FVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 218 ~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
.+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|+..
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999875 89999999997 5788999999999999999888654
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=346.23 Aligned_cols=218 Identities=24% Similarity=0.350 Sum_probs=183.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR-- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~-- 110 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYG-------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEEC-------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc
Confidence 588999999873 346999999999999999999999999999999999998631 114899999998752
Q ss_pred -----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCCC
Q 046969 111 -----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRGI 181 (697)
Q Consensus 111 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~L 181 (697)
..++.++|++|++.+++.+||+||+.+....+. ..+.++.++.++++++.+||. +..++. +.+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~L 149 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP-----GGGL 149 (258)
T ss_pred ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC-----cccC
Confidence 113569999999999999999999998765431 123445566788899999984 334443 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec------
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS------ 255 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~------ 255 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|+
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~ 227 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGK 227 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCC
Confidence 99999999999999999999999999999999999999999999964 68999999997 57889999999996
Q ss_pred CCeeeeecChhhH
Q 046969 256 GGETVYFGEAKLA 268 (697)
Q Consensus 256 ~G~iv~~G~~~~~ 268 (697)
+|++++.|++++.
T Consensus 228 ~g~i~~~~~~~~~ 240 (258)
T PRK14241 228 PGRLVEIDDTEKI 240 (258)
T ss_pred CceEEecCCHHHH
Confidence 7999999988754
No 148
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=341.43 Aligned_cols=212 Identities=24% Similarity=0.372 Sum_probs=182.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++||++.++. +. .|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++.. .
T Consensus 2 l~~~~l~~~~~~-------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYHH-------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEECC-------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChh
Confidence 689999998741 22 3899999999999999999999999999999999874 8999999997532 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
.+.++|++|++.+++.+|+.||+.+...... .. .++..++++++++.+||++..|+.+ +.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHH
Confidence 3569999999999999999999987532111 11 1233566889999999988888866 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++++.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999864 89999999997 578899999999999999999987654
No 149
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-41 Score=380.46 Aligned_cols=250 Identities=28% Similarity=0.434 Sum_probs=206.6
Q ss_pred ccccCCCCCcccCCCCCCccccccc-cc-CccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcH
Q 046969 4 MEIEGASSNAYSNRNGDNKTISFDR-AA-ARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGK 81 (697)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGK 81 (697)
|+..|.+...|+-.|.++..-.... .+ .-.-.++|+||++.|++ +++.+||+|+||+++|||++|++||||+||
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~----Rp~~~Vlk~lsfti~pGe~vALVGPSGsGK 507 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPT----RPDVPVLKNLSFTIRPGEVVALVGPSGSGK 507 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCC----CCCchhhcCceeeeCCCCEEEEECCCCCCH
Confidence 6666777777777776664433311 11 22336999999999985 257889999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCceeEEEECCEecCc-----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH
Q 046969 82 STLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHV 156 (697)
Q Consensus 82 STLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v 156 (697)
||+.++|-.++.|+ +|+|++||+|++. .++.||+|.|||.||.. ||+|||.|+.. ..+++++.+.+
T Consensus 508 STiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AA 578 (716)
T KOG0058|consen 508 STIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAA 578 (716)
T ss_pred HHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHH
Confidence 99999999999985 9999999999752 25789999999999998 99999999864 34566654333
Q ss_pred HHHHH---HcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 046969 157 DGTIL---ELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTV 233 (697)
Q Consensus 157 ~~~l~---~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tv 233 (697)
+..-. ..++++..||.||+ +...||||||||++|||||++||+||||||.||+||+.+...|.+.|.++.+ ++||
T Consensus 579 k~ANah~FI~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTV 656 (716)
T KOG0058|consen 579 KMANAHEFITNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTV 656 (716)
T ss_pred HHhChHHHHHhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeE
Confidence 22111 14688899999997 4457999999999999999999999999999999999999999999999766 5999
Q ss_pred EEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHH
Q 046969 234 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVE 270 (697)
Q Consensus 234 i~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~ 270 (697)
|++.|..+ ..+.+|+|+++++|++++.|.-++.++
T Consensus 657 lvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 657 LVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999974 578899999999999999998776543
No 150
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=343.54 Aligned_cols=221 Identities=22% Similarity=0.280 Sum_probs=181.9
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEecC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL---SRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~nG~~~~ 110 (697)
..++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|+++.
T Consensus 2 ~~l~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWYG-------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEEC-------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecc
Confidence 3688999998873 356999999999999999999999999999999999973 331 13799999998763
Q ss_pred c-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 111 V-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 111 ~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
. .++.++|++|++.+++ .|+.||+.+....+. ....++..+.++++++.+||.+...... +..++.|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 149 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSG 149 (250)
T ss_pred cccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCH
Confidence 1 1356999999998887 599999998754431 1122334567888999999865321111 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||+++|++ .++.++||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 479999999997 4788999999999999999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK14245 228 DTKKI 232 (250)
T ss_pred CHHHH
Confidence 98765
No 151
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=352.43 Aligned_cols=219 Identities=20% Similarity=0.280 Sum_probs=183.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.++++||++.++. +....+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++.
T Consensus 6 ~l~i~nl~~~~~~--~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAK--KTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCC--CCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccc
Confidence 4899999998742 1000135999999999999999999999999999999999999874 899999998752
Q ss_pred ------cCCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 111 ------VDSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 111 ------~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
..++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++.+ +.|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP-----FEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh-----hhC
Confidence 11356999999973 444 59999999865422 223445556788899999994 5667655 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999864 89999999997 4788999999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
+.|++++.
T Consensus 231 ~~g~~~~~ 238 (289)
T PRK13645 231 SIGSPFEI 238 (289)
T ss_pred EeCCHHHH
Confidence 99988764
No 152
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-40 Score=340.94 Aligned_cols=213 Identities=31% Similarity=0.486 Sum_probs=186.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
|+++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~-------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDWK-------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEeC-------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChh
Confidence 46788888763 2 2899999999999999999999999999999999999874 8999999987642 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.+||.+..++.+ +.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHH
Confidence 457999999999999999999998875432 2334555667788999999988888766 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++|+.+|++++|||||+|||+.++..+.+.|++++.+ |+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999875 99999999997 578889999999999999999987653
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.6e-40 Score=336.57 Aligned_cols=208 Identities=27% Similarity=0.398 Sum_probs=179.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---VD 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~~ 112 (697)
++++||++.++ .+++|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++. ..
T Consensus 1 ~~~~~l~~~~~---------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE---------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC---------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChh
Confidence 46889998762 1467999999999999999999999999999999999874 899999999763 22
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++||+|++.+++.+|+.||+.+...... ....+.+++++++++.+||.+..++.+ +.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHH
Confidence 4579999999999999999999987643211 112223456788999999988777765 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
++|+.+|++++|||||+|||..++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|+++..|+
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999875 89999999997 57788999999999999998875
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=343.93 Aligned_cols=211 Identities=27% Similarity=0.377 Sum_probs=181.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
+.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++..
T Consensus 2 ~~l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 2 NEIEFKEVSYSSF-------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTID 71 (241)
T ss_pred ceEEEEeEEEEeC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcC
Confidence 3588999998863 356999999999999999999999999999999999998874 8999999987531
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++ .||+||+.+....+ . . ..+++.++++.+||. +..++.+ ..|||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~q 138 (241)
T PRK14250 72 VIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDV-----KNLSGGEAQ 138 (241)
T ss_pred hHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHH
Confidence 2356999999998887 59999998754322 1 1 134577889999996 4556544 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|+++
T Consensus 139 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 139 RVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999874 99999999997 5788899999999999999999887
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 218 ~~ 219 (241)
T PRK14250 218 DF 219 (241)
T ss_pred HH
Confidence 54
No 155
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=345.84 Aligned_cols=223 Identities=25% Similarity=0.338 Sum_probs=185.2
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR 110 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~ 110 (697)
...++++||++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++.
T Consensus 18 ~~~l~~~nl~~~~~-------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 18 EIALSTKDLHVYYG-------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CeEEEEeeEEEEEC-------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 34699999999873 357999999999999999999999999999999999998631 124899999998763
Q ss_pred c-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 111 V-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 111 ~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
. .++.++|++|++.+++ .||+||+.+..... ....+++.++++.++++.++|.+..+... +..++.|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~ 166 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSG 166 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCH
Confidence 1 1456999999998887 59999999875432 11234455667888999999864322222 224568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999997 4788999999999999999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
++++.
T Consensus 245 ~~~~~ 249 (267)
T PRK14237 245 KTRNI 249 (267)
T ss_pred CHHHH
Confidence 98754
No 156
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.2e-40 Score=343.05 Aligned_cols=199 Identities=29% Similarity=0.416 Sum_probs=173.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----cCCCeEEEEe-cCCCCCC
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR----VDSGVLAYVT-QENVLLG 127 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----~~~~~i~yv~-Q~~~l~~ 127 (697)
..+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++.. ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3467999999999999999999999999999999999999874 899999998742 1235799997 5567888
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP 207 (697)
.+||+|++.+....+ ....++..+.++++++.+||.+..|+.+ ..||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999876543 2334455667888999999998888876 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 208 SSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|.+|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999875 89999999997 4788999999999999998765
No 157
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=346.74 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=183.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~- 111 (697)
.|+++||++.++ .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.++. ...+|+|.++|+++..
T Consensus 19 ~l~~~nl~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~ 91 (267)
T PRK14235 19 KMRARDVSVFYG-------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91 (267)
T ss_pred eEEEEeEEEEEC-------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence 699999999873 356999999999999999999999999999999999998641 1248999999987631
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++. ||.||+.+....+.. ..+.++..++++++++.+||.+ ..++. ++.|
T Consensus 92 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~L 164 (267)
T PRK14235 92 RLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP-----GTGL 164 (267)
T ss_pred ccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC-----cccC
Confidence 13569999999988885 999999987644311 1123444567888999999964 23333 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++.
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 78999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 243 ~g~~~~~ 249 (267)
T PRK14235 243 VGDTEKM 249 (267)
T ss_pred eCCHHHH
Confidence 9987754
No 158
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=334.01 Aligned_cols=195 Identities=34% Similarity=0.620 Sum_probs=167.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++|+||++.++.. + .++.+|+|+|+++++||+++|+|||||||||||++|+|++++....+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~--~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 3 TLSWRNISFTTGKG--R-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred eEEEEccEEEeccC--C-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchh
Confidence 58999999999752 1 35789999999999999999999999999999999999988321248999999998632
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++|++|++.+++.+||+||+.+.+... .++ .+..||||||||++
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~ 128 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVS 128 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHH
Confidence 2457999999999999999999998764211 223 33579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+++|++++|++|++++.|
T Consensus 129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999875 6787877777556888999999999999998765
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2e-40 Score=347.41 Aligned_cols=223 Identities=22% Similarity=0.317 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeccccc--cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGN--NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~--~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
.|+++||++.+..... +...+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 4899999998842100 001356999999999999999999999999999999999999874 8999999987632
Q ss_pred ----CCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHH
Q 046969 112 ----DSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 184 (697)
.++.++|++|++. +++.+||.|++.+...... ....++..+.++++++.+||. +..++.+ ..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcCHH
Confidence 1246999999974 6788899999988765431 223445556788999999994 5566654 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875 89999999997 5788899999999999999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
++++.
T Consensus 233 ~~~~~ 237 (267)
T PRK15112 233 STADV 237 (267)
T ss_pred CHHHH
Confidence 87653
No 160
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=341.97 Aligned_cols=222 Identities=26% Similarity=0.338 Sum_probs=181.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++....+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 2 IAKTTNLNLFYG-------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred ceeeeeeEEEEC-------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 467899999873 3569999999999999999999999999999999999974211248999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++ .||+||+.+....+.. ....++.+++++++++.++|.+...... +..++.||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 151 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRL 151 (246)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHH
Confidence 1356999999998887 6999999987544311 0122344566788999999953211111 113468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999865 89999999997 578899999999999999999987753
No 161
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=377.98 Aligned_cols=220 Identities=22% Similarity=0.348 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++++ ..+|+|.++|+++..
T Consensus 5 ~l~~~nl~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 5 LLEMKNITKTFG-------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNI 76 (506)
T ss_pred eEEEeeeEEEeC-------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCH
Confidence 589999999873 356999999999999999999999999999999999998751 138999999998632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++||+|++.+++.+||+||+.+....+.......++..++++++++.+||.+..++.+ ..||||||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqr 151 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQL 151 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHH
Confidence 13569999999999999999999998754321111233445567899999999988888766 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999999988899999999997 578889999999999999999987653
No 162
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.8e-40 Score=360.98 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=180.1
Q ss_pred EEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--------
Q 046969 40 NLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-------- 111 (697)
Q Consensus 40 ~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-------- 111 (697)
||++.+. ++. + |+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 4 ~l~~~~~-------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRLG-------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEEC-------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccc
Confidence 6676652 233 4 899999999999999999999999999999999874 8999999987521
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++||+|++.+++.+||+||+.|..... ..++.+++++++++.+||.+..|+.+ +.|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999999999999999875421 12344567889999999998888866 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999999999999999876 89999999997 578899999999999999999998765
No 163
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=344.84 Aligned_cols=225 Identities=24% Similarity=0.337 Sum_probs=200.7
Q ss_pred ceEEEEEEEEEeccc--------cccc---------cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 046969 34 TFLVWENLFAVLPNF--------GNNK---------PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV 96 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~--------~~~~---------~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~ 96 (697)
..++++|+++.+... ..+. +...-++|+|+.++.|||..|||-||||||||+++|.++.+|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 468889998876421 0111 1223589999999999999999999999999999999999985
Q ss_pred CceeEEEECCEecC---------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 046969 97 IMTGNVLFNGKKTR---------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD 167 (697)
Q Consensus 97 ~~~G~I~~nG~~~~---------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 167 (697)
+|+|+++|+++. .+++.+++|+|...|+|+.||.||..|+..++ ..+++++++++.++++.+||++
T Consensus 82 --~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 82 --RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred --CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 999999999852 23577999999999999999999999998886 6789999999999999999999
Q ss_pred ccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHH
Q 046969 168 CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFA 246 (697)
Q Consensus 168 ~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~ 246 (697)
.++.++ .+|||||||||.+||||+++|+||++|||+|.|||--+.++.+.|.+|.++ ++|||++|||. +|.++
T Consensus 157 ~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 999865 589999999999999999999999999999999999999999999999875 89999999996 68999
Q ss_pred hccceeeecCCeeeeecChhhHHH
Q 046969 247 LFDDLFLLSGGETVYFGEAKLAVE 270 (697)
Q Consensus 247 l~D~v~lL~~G~iv~~G~~~~~~~ 270 (697)
+-|||.+|++|+++..|+|++++.
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHc
Confidence 999999999999999999998754
No 164
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=342.24 Aligned_cols=217 Identities=26% Similarity=0.370 Sum_probs=181.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 5 ILQVSDLSVYYN-------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred eEEEEeeEEEEC-------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 589999999873 3569999999999999999999999999999999999853 421237999999987521
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++||+|++.+++ +||+||+.+....+. ....+...+.++++++.+++.+ ..++ .++.|
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 149 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHD-----SALGL 149 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhc-----CcccC
Confidence 1356999999998887 799999998754321 1123334566788888888753 2334 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 69999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|+.++.
T Consensus 228 ~g~~~~~ 234 (252)
T PRK14239 228 YNDTKQM 234 (252)
T ss_pred eCCHHHH
Confidence 9988754
No 165
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=359.98 Aligned_cols=206 Identities=27% Similarity=0.424 Sum_probs=179.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|++ ||++.+. ++. + |+|+++++||+++|+|||||||||||++|+|+++++ +|+|.++|+++..
T Consensus 2 l~~-~l~k~~~-------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQLG-------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEeC-------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 455 7787763 222 3 899999999999999999999999999999999874 8999999987521
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++||+|+..+++.+||+||+.|... ....++++++++.+||.+..++.+ +.||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHH
Confidence 24579999999999999999999998642 112356888999999998888866 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++ +++.+++|++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999876 89999999997 578999999999999999999998
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
++..
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 8653
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=354.79 Aligned_cols=225 Identities=18% Similarity=0.206 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecCc--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH-VIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~nG~~~~~-- 111 (697)
.|+++||++.++.. + ..+.+|+|||+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~--~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 3 LLDIRNLTIEFKTS--D-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred eEEEeeeEEEEeCC--C-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 58999999988531 1 2356999999999999999999999999999999999998632 1348999999997531
Q ss_pred -------CCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCcc---cCccccCc
Q 046969 112 -------DSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSS---MSKEDIKSHVDGTILELGLHDC---ADTVIGNW 176 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~---~d~~vg~~ 176 (697)
.++.++||+|++. +.+.+||.+++........... ...++.++++.++++.+||.+. .++
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 154 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS----- 154 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC-----
Confidence 1246999999975 6788999999986432111000 1123445678899999999753 344
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeec
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
.+.+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++ |.|||++||++ ..+.+++|++++|.
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~ 233 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLY 233 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 44689999999999999999999999999999999999999999999999875 99999999997 57889999999999
Q ss_pred CCeeeeecChhhH
Q 046969 256 GGETVYFGEAKLA 268 (697)
Q Consensus 256 ~G~iv~~G~~~~~ 268 (697)
+|++++.|++++.
T Consensus 234 ~G~ive~g~~~~i 246 (330)
T PRK15093 234 CGQTVETAPSKEL 246 (330)
T ss_pred CCEEEEECCHHHH
Confidence 9999999998764
No 167
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=342.27 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++. ...+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 4 KMESKNLNLWYG-------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred EEEEEEeEEEEC-------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 578999998763 356999999999999999999999999999999999997641 1248999999998631
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++ +|++||+.+...... ....++..++++++++.+||.+ ..++ .++.|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 148 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK-----SALKL 148 (251)
T ss_pred cccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccC
Confidence 1356999999998887 899999998754321 1123445567788999998842 3344 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++
T Consensus 149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999876 69999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 227 ~~~~~~~ 233 (251)
T PRK14270 227 FNKTEKI 233 (251)
T ss_pred eCCHHHH
Confidence 9998764
No 168
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-40 Score=340.69 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=181.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|..+ +....+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 3 KISVKDLDLFYG-------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred eEEEEEEEEEEC-------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 478999999873 3469999999999999999999999999999999999875 211248999999987531
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++ +||.||+.+....+. ..+.++.++.++++++.+++.+ ..++. +..|
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~L 147 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS-----ALGL 147 (250)
T ss_pred ccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC-----CCCC
Confidence 1356999999998887 899999998754331 1123445667888888888753 33443 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 79999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 226 ~~~~~~~ 232 (250)
T PRK14240 226 FGDTVDL 232 (250)
T ss_pred eCCHHHH
Confidence 9987754
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=341.45 Aligned_cols=221 Identities=23% Similarity=0.355 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSR--HVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++ ....+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 3 IIEIENFSAYYG-------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred eEEEEeeEEEeC-------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 478999999873 35699999999999999999999999999999999999863 11248999999987531
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.++|++|++.+++ +||+||+.+...... ....++.++.+++.++.+|+.+..+.. .+..+++|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq 151 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQ 151 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHH
Confidence 1356999999999887 899999998754321 122334456678888999986421111 122446899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.+++|++++|++|+++..|++
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 79999999997 468899999999999999999988
Q ss_pred hhH
Q 046969 266 KLA 268 (697)
Q Consensus 266 ~~~ 268 (697)
++.
T Consensus 230 ~~~ 232 (250)
T PRK14262 230 REI 232 (250)
T ss_pred HHH
Confidence 764
No 170
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=340.59 Aligned_cols=218 Identities=22% Similarity=0.336 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV--IMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+|+|+|.+++.. ..+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYG-------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEEC-------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC
Confidence 588999998873 3569999999999999999999999999999999999986531 137999999987631
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++.+|+.||+.+..... ....+++..+.+++.++.+++. +..++. ++.|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~L 149 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTP-----ATGL 149 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC-----cccC
Confidence 1356999999999999999999998765432 1112344456677777777663 334444 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 150 SGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 79999999997 47888999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 228 ~~~~~~~ 234 (252)
T PRK14272 228 HGPTDQL 234 (252)
T ss_pred eCCHHHH
Confidence 9988764
No 171
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-40 Score=345.35 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++. . ..+.+|+|+|+++++||+++|+|+||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~---~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK---E-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC---C-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCH
Confidence 5899999998742 1 1346999999999999999999999999999999999999874 8999999988632
Q ss_pred --CCCeEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++. .++..||.||+.+..... ..++++..++++++++.+||.+..++.+ ..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHH
Confidence 2457999999974 577789999998865432 2345555677899999999988777755 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++. .+|++++|++|+++..|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 999999999974 554 699999999999999999876
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 227 ~ 227 (277)
T PRK13642 227 L 227 (277)
T ss_pred H
Confidence 4
No 172
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=376.24 Aligned_cols=218 Identities=24% Similarity=0.424 Sum_probs=189.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+. ++++|+|+|+++++||+++|+|||||||||||++|+|.++++ +|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAFP-------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEeC-------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 489999999873 356999999999999999999999999999999999999874 8999999987632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++||+|++.+++.+||+||+.+....+.. ...+.++.+++++++++.+||.+..|+.++ .|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHH
Confidence 135699999999999999999999986543210 112334455678899999999988887764 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCc
Confidence 99999999999999999999999999999999999999988899999999997 57889999999999999999998765
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 3
No 173
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.8e-40 Score=342.77 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-----T 109 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-----~ 109 (697)
.++++||++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLYG-------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEcC-------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccc
Confidence 589999999873 356999999999999999999999999999999999999874 8999999987 4
Q ss_pred Cc---------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCcc
Q 046969 110 RV---------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWH 177 (697)
Q Consensus 110 ~~---------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~ 177 (697)
.. .++.++|++|++ .+++.+|+.||+.+...... .....+.++.+.++++.+++.+ ..++.+
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 149 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLP---- 149 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCC----
Confidence 21 124699999997 46788899999976532211 1122345567889999999974 556654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++ .++.+++|++++|++
T Consensus 150 -~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 150 -TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQ 227 (258)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEEC
Confidence 579999999999999999999999999999999999999999999999875 89999999997 577789999999999
Q ss_pred CeeeeecChhhH
Q 046969 257 GETVYFGEAKLA 268 (697)
Q Consensus 257 G~iv~~G~~~~~ 268 (697)
|++++.|++++.
T Consensus 228 g~i~~~~~~~~~ 239 (258)
T PRK11701 228 GRVVESGLTDQV 239 (258)
T ss_pred CEEEEeCCHHHH
Confidence 999999988754
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=344.98 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=180.5
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV--IMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~ 111 (697)
..++++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++.. ..+|+|.++|+++..
T Consensus 12 ~~l~i~nl~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 12 IIISLQNVTISYG-------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred ceEEEEeEEEEEC-------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4699999999873 3569999999999999999999999999999999999976310 248999999987521
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCC
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRG 180 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~ 180 (697)
.++.++|++|++.+++. ||+||+.+.+..+ .... +.++.++++++.+++. +..++. +..
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~ 154 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES-----GYS 154 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC-----ccc
Confidence 13569999999988885 9999999876543 1122 2345667788888774 334443 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC----
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG---- 256 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~---- 256 (697)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999965 79999999997 578899999999996
Q ss_pred -------CeeeeecChhhHH
Q 046969 257 -------GETVYFGEAKLAV 269 (697)
Q Consensus 257 -------G~iv~~G~~~~~~ 269 (697)
|++++.|+++++.
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccccceEEEeCCHHHHH
Confidence 6789999987653
No 175
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=340.71 Aligned_cols=221 Identities=21% Similarity=0.311 Sum_probs=180.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc--
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~-- 111 (697)
-+++||++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 78 (251)
T PRK14244 6 ASVKNLNLWYG-------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78 (251)
T ss_pred EEeeeEEEEEC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc
Confidence 36788888763 3579999999999999999999999999999999999975 211248999999987521
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++|++|++.+++. ||.||+.+....+. .....++.++.++++++.+||.+...+... ..++.||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~ 155 (251)
T PRK14244 79 TNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQ 155 (251)
T ss_pred cchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHH
Confidence 13569999999988886 99999998754321 111233445667889999999753211111 13468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 89999999997 4788899999999999999999876
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 234 ~~ 235 (251)
T PRK14244 234 EI 235 (251)
T ss_pred HH
Confidence 53
No 176
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=324.33 Aligned_cols=217 Identities=30% Similarity=0.430 Sum_probs=187.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD--- 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--- 112 (697)
++.+||+|.+ ..|++|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 2 i~a~nls~~~-------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 2 IRAENLSYSL-------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71 (259)
T ss_pred eeeeeeEEEe-------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHH
Confidence 6789999987 3688999999999999999999999999999999999999885 89999999986422
Q ss_pred --CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 113 --SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 113 --~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.+.-+.++|+..+-...||+|-+.++..-... .....+..+.+++.+...++.+.+.+.. +.|||||||||.
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVq 145 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQ 145 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHH
Confidence 25578999998885556999999998543211 1222355567888999999999887754 689999999999
Q ss_pred HHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 191 IALEILT------KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 191 Ia~~Ll~------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||.+ ....+||||++|++||++..|+
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCC
Confidence 9999985 45699999999999999999999999999999999999999985 6788999999999999999999
Q ss_pred hhhHH
Q 046969 265 AKLAV 269 (697)
Q Consensus 265 ~~~~~ 269 (697)
+++++
T Consensus 225 p~~vl 229 (259)
T COG4559 225 PQDVL 229 (259)
T ss_pred HHHhc
Confidence 98865
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=346.19 Aligned_cols=220 Identities=27% Similarity=0.364 Sum_probs=183.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEecC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH-----VIMTGNVLFNGKKTR 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~I~~nG~~~~ 110 (697)
|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. ...+|+|.++|.+..
T Consensus 2 l~~~nl~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 2 LTADHLHVARR-------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred eEEEEEEEEEC-------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 78999998863 356999999999999999999999999999999999998763 012799999998763
Q ss_pred c-----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 111 V-----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 111 ~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
. .++.++|++|++.+++.+||+||+.+....... .....++..++++++++.+||.+..++.+ ..||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 149 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGG 149 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 1 134589999998766678999999885321100 01111233456888999999988777655 579999
Q ss_pred HHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeee
Q 046969 185 EKKRLSIALEIL---------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 185 erqRvsIa~~Ll---------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
|||||+||++|+ .+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++ .++.++||++++|
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l 228 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEE
Confidence 999999999999 599999999999999999999999999999876 89999999997 5788899999999
Q ss_pred cCCeeeeecChhhH
Q 046969 255 SGGETVYFGEAKLA 268 (697)
Q Consensus 255 ~~G~iv~~G~~~~~ 268 (697)
++|++++.|++++.
T Consensus 229 ~~G~i~~~g~~~~~ 242 (272)
T PRK13547 229 ADGAIVAHGAPADV 242 (272)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999988754
No 178
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.4e-41 Score=387.40 Aligned_cols=220 Identities=31% Similarity=0.439 Sum_probs=187.8
Q ss_pred CccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 046969 31 ARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 110 (697)
...-.++++|+++.+.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|++||.++.
T Consensus 467 ~~~g~I~~~nvsf~y~~-----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~ 538 (709)
T COG2274 467 KLQGEIEFENVSFRYGP-----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLN 538 (709)
T ss_pred ccCceEEEEEEEEEeCC-----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHH
Confidence 33446999999999853 3347999999999999999999999999999999999999985 999999999864
Q ss_pred c-----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH-----HHHHHHcCCCcccCccccCccCCC
Q 046969 111 V-----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHV-----DGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 111 ~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
. .++.+|||+||+.+|.. |++||+.++. | ..+.+++.+.+ .+.+ ..+....||.+|+ +..+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI--~~lP~gy~t~v~E-~G~~ 609 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATDEEIIEAAQLAGAHEFI--ENLPMGYDTPVGE-GGAN 609 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHH--Hhccccccccccc-CCCC
Confidence 2 26789999999999988 9999999864 2 23444433221 2222 3566778999986 5678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++.. |+|+|+++|+++ ..+.||||++|++|+++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCcee
Confidence 999999999999999999999999999999999999999999999865 799999999984 68899999999999999
Q ss_pred eecChhhHHH
Q 046969 261 YFGEAKLAVE 270 (697)
Q Consensus 261 ~~G~~~~~~~ 270 (697)
.+|+.++..+
T Consensus 687 ~~gs~~ell~ 696 (709)
T COG2274 687 EQGSHEELLA 696 (709)
T ss_pred ccCCHHHHHH
Confidence 9999988665
No 179
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-40 Score=333.65 Aligned_cols=200 Identities=30% Similarity=0.441 Sum_probs=172.9
Q ss_pred EEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--------
Q 046969 40 NLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-------- 111 (697)
Q Consensus 40 ~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-------- 111 (697)
+|++.+. ++.+ |+|+++++ |+++|+|||||||||||++|+|.+++. +|+|.++|.+...
T Consensus 5 ~l~~~~~-------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 71 (214)
T cd03297 5 DIEKRLP-------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLP 71 (214)
T ss_pred eeeEecC-------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhh
Confidence 7777763 2344 99999999 999999999999999999999999874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++|++|++.+++.+|++||+.+..... ..+..+++++++++.+|+.+..++.+ ..||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 141 (214)
T cd03297 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVA 141 (214)
T ss_pred hHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHH
Confidence 1356999999999999999999998865321 22334566888999999987777655 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|+++..|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999875 89999999997 5788899999999999998765
No 180
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=376.63 Aligned_cols=218 Identities=21% Similarity=0.341 Sum_probs=188.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSFG-------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEcC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCH
Confidence 589999999873 356999999999999999999999999999999999999874 8999999988632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhcc--C-C-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLR--L-P-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.++||+|++.+++.+||+||+.+..... . . ...+.++..++++++++.+||.+..|+.++ +||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHH
Confidence 1246999999999999999999998754211 0 0 001234456678899999999988888764 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999999999999988899999999997 57889999999999999999998
Q ss_pred hhhH
Q 046969 265 AKLA 268 (697)
Q Consensus 265 ~~~~ 268 (697)
+++.
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8753
No 181
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=317.16 Aligned_cols=218 Identities=27% Similarity=0.394 Sum_probs=194.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
+..++++.++.. ..+.+|+|+|+.+.+||.++++||||||||||||++||..+|. .|+|.+||+++.-....
T Consensus 4 l~~~~~sl~y~g-----~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgae 75 (259)
T COG4525 4 LNVSHLSLSYEG-----KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eehhheEEecCC-----cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCcc
Confidence 556677777642 1256999999999999999999999999999999999999984 89999999998655556
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
-|.|+|++.|+|.+||.+|+.|+.+++ .+.+.++.+++.+.+..+||++..+..| -+|||||||||.|||||
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARAL 147 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARAL 147 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHh
Confidence 799999999999999999999999987 5788999999999999999999888766 58999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeec--CCeeeeecChhhHHH
Q 046969 196 LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAKLAVE 270 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~--~G~iv~~G~~~~~~~ 270 (697)
..+|++|+||||++.||..++.++.+.|-++.+ .|+.++++||+. +|..-+++|+++|+ .|+++..-+++-...
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 999999999999999999999999999999886 599999999996 67778999999998 679998877763333
No 182
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-40 Score=343.29 Aligned_cols=224 Identities=24% Similarity=0.323 Sum_probs=183.8
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEec
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKT 109 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~ 109 (697)
..-.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|++++. ...+|+|.++|.++
T Consensus 22 ~~~~l~~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i 94 (272)
T PRK14236 22 EQTALEVRNLNLFYG-------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI 94 (272)
T ss_pred CCcEEEEEEEEEEEC-------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEEC
Confidence 344699999999873 346999999999999999999999999999999999998631 12489999999875
Q ss_pred Cc-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 110 RV-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 110 ~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
.. .++.++|++|++.+++. ||+||+.+..... ....+++.++.++++++.+++.+...+.. +..++.||
T Consensus 95 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 170 (272)
T PRK14236 95 YDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLS 170 (272)
T ss_pred cccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCC
Confidence 31 14579999999988886 9999998875432 11123334566888888889864211111 12346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|++++.
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999976 79999999997 578899999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|++++.
T Consensus 249 g~~~~~ 254 (272)
T PRK14236 249 GDTDTL 254 (272)
T ss_pred CCHHHH
Confidence 987753
No 183
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-40 Score=342.75 Aligned_cols=217 Identities=23% Similarity=0.314 Sum_probs=179.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 21 ILEVKDLSIYYG-------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred eEEEEEEEEEeC-------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 589999999873 3569999999999999999999999999999999999864 111248999999987631
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++. ||.||+.+...... .......++.+.+.++.+++.+ ..++. +..|
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~L 165 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS-----ALSL 165 (268)
T ss_pred cccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC-----cccC
Confidence 13569999999988885 99999998654321 1122333456777888888852 23443 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 68999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 244 ~~~~~~~ 250 (268)
T PRK14248 244 YDQTEQI 250 (268)
T ss_pred eCCHHHH
Confidence 9987754
No 184
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.7e-40 Score=331.77 Aligned_cols=196 Identities=31% Similarity=0.454 Sum_probs=169.9
Q ss_pred EEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c----
Q 046969 39 ENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---V---- 111 (697)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~---- 111 (697)
+||++.++ ++++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++. .
T Consensus 2 ~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 2 KNISKKFG-------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred cceEEEEC-------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHH
Confidence 57777663 356999999999999999999999999999999999999874 899999999742 1
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+||.+..++.+ +.||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~ 143 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRV 143 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHH
Confidence 1357999999999999999999999875432 2334455667889999999988888765 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|.|||+++|++. ..+.||++++|
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999999999999999999999877999999999974 45789999875
No 185
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-40 Score=314.44 Aligned_cols=211 Identities=29% Similarity=0.415 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.++.+++++++.+ +.....||++|++.+++||-+||+|||||||||||-+++|+..++ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~---~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ---GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC---CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCH
Confidence 5788888888754 334678999999999999999999999999999999999998875 999999999852
Q ss_pred -----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 111 -----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 111 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.+.+.+|+|+|...|+|+||..||+...+.++.. +..+..+...++++.+||.+..+-+ +++|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccC-----ccccCchH
Confidence 2347899999999999999999999999888742 3344456678899999998877654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
+|||+||||+...|+|||.||||-+||..+..+|.+.|-.+.++ |.|.|++|||| .+..-|||.+-|..|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999999875 99999999998 4788999999999999874
No 186
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=343.20 Aligned_cols=224 Identities=21% Similarity=0.301 Sum_probs=186.1
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEec
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKT 109 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~ 109 (697)
+...|+++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++
T Consensus 18 ~~~~l~i~nl~~~~~-------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 90 (276)
T PRK14271 18 AAPAMAAVNLTLGFA-------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90 (276)
T ss_pred cCcEEEEeeEEEEEC-------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc
Confidence 344789999999873 357999999999999999999999999999999999998741 12489999999875
Q ss_pred Cc------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 110 RV------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 110 ~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
.. .++.++|++|++.+++ .||+||+.+..... ...+.++..+.+.++++.++|.+..++.. +..++.|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSg 166 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSG 166 (276)
T ss_pred cccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCH
Confidence 31 1457999999998888 79999998865322 11244555566788899999975332211 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.|
T Consensus 167 Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 58999999997 5788999999999999999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
++++.
T Consensus 245 ~~~~~ 249 (276)
T PRK14271 245 PTEQL 249 (276)
T ss_pred CHHHH
Confidence 98754
No 187
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.5e-40 Score=363.50 Aligned_cols=227 Identities=27% Similarity=0.385 Sum_probs=199.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecC---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH-VIMTGNVLFNGKKTR--- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~nG~~~~--- 110 (697)
.|+++||++++... + ....+++||||++++||++||+|.|||||||+.++|.|+++.+ ...+|+|.++|+++.
T Consensus 5 lL~V~nL~v~~~~~--~-~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 5 LLEVENLTVEFATD--G-GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred eEEEeceEEEEecC--C-cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 69999999998753 2 2357999999999999999999999999999999999999876 456899999998641
Q ss_pred ------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 111 ------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 111 ------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
.+.+.|+||+|++ .+-|-+||.+-+.-....+. ..+.++.++++.++++.+||.+.... +.++++||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLS 156 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLS 156 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccC
Confidence 1236799999996 46777999999987776653 23478888999999999999887665 45789999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||.||+||+.+|++|++||||++||..++.+|++.|+++.+ .|.++|++|||+ .-+.++||||++|.+|++|+
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999996 499999999998 57899999999999999999
Q ss_pred ecChhhHHH
Q 046969 262 FGEAKLAVE 270 (697)
Q Consensus 262 ~G~~~~~~~ 270 (697)
.|+++++..
T Consensus 236 ~G~~~~i~~ 244 (539)
T COG1123 236 TGPTEEILS 244 (539)
T ss_pred ecCHHHHHh
Confidence 999998764
No 188
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=340.50 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVI--MTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~I~~nG~~~~~- 111 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+|||||||||++|+|++++... .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 7 AIKVKDLSFYYN-------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred eEEEEEEEEEEC-------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 589999999873 35699999999999999999999999999999999999875211 38999999987531
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++ +||+||+.+....+. ...+.+..+.++++++.+|+. +..++. +..|
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~L 151 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS-----ALGL 151 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC-----cccC
Confidence 1356999999999887 899999988754331 123344456678888988884 334443 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec-----C
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS-----G 256 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~-----~ 256 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +
T Consensus 152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCC
Confidence 99999999999999999999999999999999999999999999875 69999999997 57889999999997 5
Q ss_pred CeeeeecChhhH
Q 046969 257 GETVYFGEAKLA 268 (697)
Q Consensus 257 G~iv~~G~~~~~ 268 (697)
|++++.|++++.
T Consensus 230 G~i~~~~~~~~~ 241 (259)
T PRK14260 230 GQMVEFGVTTQI 241 (259)
T ss_pred ceEEEeCCHHHH
Confidence 999999998864
No 189
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=337.98 Aligned_cols=217 Identities=24% Similarity=0.353 Sum_probs=180.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.++ +....+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 4 IISAKDVHLSYG-------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred eEEEEeeEEEEC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 488999999873 3569999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.. ..++ .+.+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 148 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAF 148 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhC
Confidence 2356999999998886 699999988654321 1122334456788889999852 2344 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+++|++++|++|+++.
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 69999999997 47888999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 227 ~~~~~~~ 233 (251)
T PRK14251 227 AGPTEEM 233 (251)
T ss_pred eCCHHHH
Confidence 9988754
No 190
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-40 Score=338.58 Aligned_cols=221 Identities=23% Similarity=0.327 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR-- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~-- 110 (697)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..++. ...+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 3 KFNIENLDLFYG-------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75 (249)
T ss_pred eEEEeccEEEEC-------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc
Confidence 578999998873 356999999999999999999999999999999999998742 024899999998753
Q ss_pred ----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 111 ----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 111 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
..++.++|++|++.+++ .||.||+.+..... ....++..++++.+.++.+++.+...... +..+..||||||
T Consensus 76 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~ 151 (249)
T PRK14253 76 IDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQ 151 (249)
T ss_pred cchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHH
Confidence 11356999999999887 79999998875432 11123344566778888888753221111 123458999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 59999999997 5788999999999999999999876
Q ss_pred hH
Q 046969 267 LA 268 (697)
Q Consensus 267 ~~ 268 (697)
+.
T Consensus 230 ~~ 231 (249)
T PRK14253 230 VI 231 (249)
T ss_pred HH
Confidence 53
No 191
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.3e-40 Score=333.43 Aligned_cols=209 Identities=28% Similarity=0.459 Sum_probs=180.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+.. +...+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~---~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGH---GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccC---CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHh
Confidence 788999998742 111367999999999999999999999999999999999999874 8999999997631
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+||.+..++.+ +.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 13579999999999999999999998765321 1345556678899999999988777765 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. +.++||++++|.+|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999987 4899999999973 5689999999999986
No 192
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.9e-40 Score=336.41 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=172.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecCc---CCCeEEEEecCCC--CCCCCC
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH-VIMTGNVLFNGKKTRV---DSGVLAYVTQENV--LLGTLT 130 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~nG~~~~~---~~~~i~yv~Q~~~--l~~~lT 130 (697)
+|+|+|+++++||+++|+||||||||||+++|+|.+++. ...+|+|.++|+++.. .++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998761 0138999999988642 1357999999984 567789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC---cccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 046969 131 VRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH---DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207 (697)
Q Consensus 131 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP 207 (697)
+.|++.+...... ...++.+++++++++.+||. +..++.+ ..|||||||||+||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987654321 11234456788999999997 3455544 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 208 SSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+|||+.+...+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999875 89999999997 478899999999999999999987754
No 193
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=338.07 Aligned_cols=221 Identities=23% Similarity=0.321 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 6 ILSTKNLNLWYG-------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred eEEEeeeEEEEC-------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 589999998873 356999999999999999999999999999999999986531 1137999999988531
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+.. +..++.|||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~ 154 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQ 154 (253)
T ss_pred ccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHH
Confidence 13569999999998885 99999998765431 1123344566788888888753211111 12346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|+++..|++
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKT 232 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCH
Confidence 9999999999999999999999999999999999999999976 68999999997 578889999999999999999998
Q ss_pred hhH
Q 046969 266 KLA 268 (697)
Q Consensus 266 ~~~ 268 (697)
++.
T Consensus 233 ~~~ 235 (253)
T PRK14261 233 TQI 235 (253)
T ss_pred HHH
Confidence 754
No 194
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=337.68 Aligned_cols=221 Identities=20% Similarity=0.281 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV--IMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~- 111 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~-------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 4 KIKIRGVNFFYH-------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred eEEEEEEEEEEC-------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 488999998873 3569999999999999999999999999999999999987631 126999999987531
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.++||+|++.+++. ||+||+.+....+. ....++..+.+++.++.++|.+...... +..+..|||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq 152 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQ 152 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHH
Confidence 14579999999998875 99999998765431 1112334456777888888753211111 22446899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRT 230 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999999999999985 589999999997 578899999999999999999988
Q ss_pred hhH
Q 046969 266 KLA 268 (697)
Q Consensus 266 ~~~ 268 (697)
++.
T Consensus 231 ~~~ 233 (251)
T PRK14249 231 GEI 233 (251)
T ss_pred HHH
Confidence 754
No 195
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-39 Score=336.79 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=181.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR--LSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+ +++ .+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~ 76 (252)
T CHL00131 7 ILEIKNLHASVN-------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDL 76 (252)
T ss_pred eEEEEeEEEEeC-------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccC
Confidence 589999998873 34699999999999999999999999999999999997 344 48999999987532
Q ss_pred ----CCC-eEEEEecCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 112 ----DSG-VLAYVTQENVLLGTLTVRETITYSAHLRLP----SSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ----~~~-~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
..+ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++ .+|
T Consensus 77 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~L 152 (252)
T CHL00131 77 EPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGF 152 (252)
T ss_pred ChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCC
Confidence 112 478999999999999999999876432110 0112233456778899999997 35566543 259
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh-ccceeeecCCeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL-FDDLFLLSGGETV 260 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~iv 260 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +.+... +|++++|++|+++
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999987799999999997 456665 8999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
+.|+++.+
T Consensus 232 ~~~~~~~~ 239 (252)
T CHL00131 232 KTGDAELA 239 (252)
T ss_pred EecChhhh
Confidence 99988743
No 196
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.3e-40 Score=340.64 Aligned_cols=212 Identities=29% Similarity=0.440 Sum_probs=170.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+.. ..+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYKP-----DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecCC-----CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHH
Confidence 468899987632 2356999999999999999999999999999999999999874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCcccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKS-----HVDGTILEL--GLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSG 183 (697)
.++.++|++|++.+++ .||.||+.+... ....++..+ ..+++++.+ ++++..+. .+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCH
Confidence 1356999999998875 699999987432 111221111 123334444 44443444 3468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++ +.||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 899999999984 55 569999999999999999
Q ss_pred ChhhHH
Q 046969 264 EAKLAV 269 (697)
Q Consensus 264 ~~~~~~ 269 (697)
++++..
T Consensus 219 ~~~~~~ 224 (237)
T cd03252 219 SHDELL 224 (237)
T ss_pred CHHHHH
Confidence 887643
No 197
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=336.98 Aligned_cols=218 Identities=24% Similarity=0.333 Sum_probs=179.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTR- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~- 110 (697)
..++++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++.
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 4 KIITSSDVHLFYG-------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred ceEEEEeEEEEEC-------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 3589999999873 3569999999999999999999999999999999999864 31124899999998752
Q ss_pred ------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCC
Q 046969 111 ------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRG 180 (697)
Q Consensus 111 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~ 180 (697)
..++.++|++|++.+++ .||.||+.+....+. ...++..++.+.+.++.+++. +..++ .+..
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~ 148 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHE-----SALS 148 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhc-----Cccc
Confidence 11357999999998888 699999998754331 112233345566778888764 22333 3468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.+|++++|++|+++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLI 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 58999999997 5788999999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
..|++.+.
T Consensus 227 ~~~~~~~~ 234 (252)
T PRK14255 227 EFADTKQM 234 (252)
T ss_pred EeCCHHHH
Confidence 99988754
No 198
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.6e-39 Score=338.05 Aligned_cols=215 Identities=23% Similarity=0.313 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecCc--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV-IMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~-- 111 (697)
.++++|+++.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA--------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe--------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc
Confidence 58899999875 1459999999999999999999999999999999999987621 138999999998632
Q ss_pred -CCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccCccccCccCCCCCHHH
Q 046969 112 -DSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD---CADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 -~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSGGe 185 (697)
.++.++||+|++. +.+.+|+.+++.+.+.... ...+ .+++.++++.++|.+ ..++.+ ..|||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~Gq 145 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPAD--DATLTAALEAVGLENAARVLKLYP-----FEMSGGM 145 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcC---CChH--HHHHHHHHHHcCCCChhhhhhcCC-----cccCHHH
Confidence 1356999999974 4566899999877543321 1122 256788999999976 345544 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999997 56888999999999999999999
Q ss_pred hhhH
Q 046969 265 AKLA 268 (697)
Q Consensus 265 ~~~~ 268 (697)
+++.
T Consensus 225 ~~~~ 228 (254)
T PRK10418 225 VETL 228 (254)
T ss_pred HHHH
Confidence 8754
No 199
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-40 Score=361.75 Aligned_cols=216 Identities=33% Similarity=0.466 Sum_probs=185.5
Q ss_pred CccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 046969 31 ARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 110 (697)
..++.+..+||++.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|+++++ +|+|.+||.+..
T Consensus 316 ~~~~ei~~~~l~~~y~~------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~ 386 (559)
T COG4988 316 EPPIEISLENLSFRYPD------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLR 386 (559)
T ss_pred CCCceeeecceEEecCC------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCcccc
Confidence 34567777899998752 348999999999999999999999999999999999999984 999999999864
Q ss_pred c-----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC------CcccCccccCccCC
Q 046969 111 V-----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL------HDCADTVIGNWHLR 179 (697)
Q Consensus 111 ~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL------~~~~d~~vg~~~~~ 179 (697)
. .+++++||+|++.+|+. |++|||.++.. ..+++++. ++++..|| .+..|+.+|+ ..+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~i~----~al~~a~l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEEII----AALDQAGLLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHHHH----HHHHHhcHHHhhcCCCcccchhcc-CCC
Confidence 2 25789999999999998 99999998632 24455543 44455454 3466888886 567
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
+|||||+|||++||||+.+++++++||||++||.+++..|++.|.+++++ +|||++||++ ....-+|+|++|++|++
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l 532 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRL 532 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCce
Confidence 99999999999999999999999999999999999999999999999875 9999999997 45678999999999999
Q ss_pred eeecChhhHH
Q 046969 260 VYFGEAKLAV 269 (697)
Q Consensus 260 v~~G~~~~~~ 269 (697)
+..|..++..
T Consensus 533 ~~~g~~~~L~ 542 (559)
T COG4988 533 VEQGTHEELS 542 (559)
T ss_pred eccCCHHHHh
Confidence 9999988764
No 200
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-39 Score=371.83 Aligned_cols=211 Identities=21% Similarity=0.337 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 11 LLCARSISKQYS-------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTP 80 (510)
T ss_pred eEEEEeEEEEeC-------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 589999999873 356999999999999999999999999999999999999874 8999999987632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++||+|++.+++.+||.||+.+.... .++.+++++++++.+||.+..++.++ .||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 148 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQI 148 (510)
T ss_pred HHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCHHHHHH
Confidence 124699999999999999999999885321 12345678889999999988888664 799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999999999999999988899999999997 578899999999999999999988754
No 201
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=338.55 Aligned_cols=222 Identities=27% Similarity=0.355 Sum_probs=184.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR-- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~-- 110 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. ...+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~~-------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 7 AIKVNNLSFYYD-------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred eEEEeeEEEEeC-------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 589999999873 246999999999999999999999999999999999998762 124799999998752
Q ss_pred -----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 111 -----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 111 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
..++.++|++|+..+++ +|+.||+.+...... ..+..+..+.+.++++.+++.+..+... +..+..|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq 155 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQ 155 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHH
Confidence 11356999999988888 899999988754321 1123344567888999999854221111 12346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecC-----Cee
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSG-----GET 259 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~-----G~i 259 (697)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++. .|+|||+++|++ .++.++||++++|++ |++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceE
Confidence 9999999999999999999999999999999999999999876 489999999997 578999999999999 999
Q ss_pred eeecChhhH
Q 046969 260 VYFGEAKLA 268 (697)
Q Consensus 260 v~~G~~~~~ 268 (697)
++.|++++.
T Consensus 235 ~~~~~~~~~ 243 (261)
T PRK14258 235 VEFGLTKKI 243 (261)
T ss_pred EEeCCHHHH
Confidence 999998865
No 202
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=340.66 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=180.9
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR 110 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~ 110 (697)
...++++||++.+. .+.+|+|+|+.+++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++.
T Consensus 37 ~~~l~i~~l~~~~~-------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 37 ETVIEARDLNVFYG-------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CceEEEEEEEEEEC-------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 34689999999873 356999999999999999999999999999999999998621 014899999998752
Q ss_pred -------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCC
Q 046969 111 -------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLR 179 (697)
Q Consensus 111 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~ 179 (697)
..++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+||.+ ..++. +.
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-----~~ 179 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-----GL 179 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC-----cc
Confidence 114579999999988886 99999998765431 222 34556888999999853 34443 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcccee-eecCCe
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLF-LLSGGE 258 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~-lL~~G~ 258 (697)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.+++||++ +|++|+
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGE 257 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCE
Confidence 89999999999999999999999999999999999999999999999864 8999999997 57888999975 679999
Q ss_pred eeeecChhhH
Q 046969 259 TVYFGEAKLA 268 (697)
Q Consensus 259 iv~~G~~~~~ 268 (697)
++..|++++.
T Consensus 258 i~~~g~~~~~ 267 (285)
T PRK14254 258 LVEFDDTDKI 267 (285)
T ss_pred EEEeCCHHHH
Confidence 9999987654
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=342.25 Aligned_cols=219 Identities=22% Similarity=0.311 Sum_probs=181.4
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~ 110 (697)
...|+++||++.+. .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++.
T Consensus 37 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 37 KPHVVAKNFSIYYG-------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred ceEEEEeeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 34689999999873 2459999999999999999999999999999999999854 21014899999998752
Q ss_pred c-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCC
Q 046969 111 V-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLR 179 (697)
Q Consensus 111 ~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~ 179 (697)
. .++.++|++|++.+++. ||.||+.+....+. ..+....++.+.++++.+|+. +..++. +.
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~ 181 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN-----AL 181 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC-----hh
Confidence 1 13579999999988875 99999998754321 112333456677888888874 334443 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVL 259 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999875 68999999997 578889999999999999
Q ss_pred eeecChhhH
Q 046969 260 VYFGEAKLA 268 (697)
Q Consensus 260 v~~G~~~~~ 268 (697)
+..|++++.
T Consensus 260 ~~~g~~~~~ 268 (286)
T PRK14275 260 VEHAPTAQL 268 (286)
T ss_pred EEeCCHHHH
Confidence 999988754
No 204
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=348.16 Aligned_cols=224 Identities=23% Similarity=0.325 Sum_probs=186.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~- 110 (697)
-.++++|+++.+.. ..+.+|+|+|+++++||++||+|||||||||||++|+|..++. ...+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~~-----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred ceEEEEeeEEEecC-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 36899999998742 2356999999999999999999999999999999999997531 124899999999863
Q ss_pred ------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 111 ------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKE-DIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 111 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
..++.++||+|++.+++ .|++||+.|..... ..+++ ..++.+.++++.++|.+..++.++. ....|||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSg 228 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSG 228 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCH
Confidence 12467999999998886 69999999865332 12223 2345577888888886544454543 5578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++ ..+.++||||++|++|++++.|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999876 69999999997 5788899999999999999999
Q ss_pred ChhhHH
Q 046969 264 EAKLAV 269 (697)
Q Consensus 264 ~~~~~~ 269 (697)
+++++.
T Consensus 307 ~~~~l~ 312 (329)
T PRK14257 307 ETKTIF 312 (329)
T ss_pred CHHHHh
Confidence 998653
No 205
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.8e-39 Score=335.92 Aligned_cols=216 Identities=27% Similarity=0.364 Sum_probs=180.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-----T 109 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-----~ 109 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSYG-------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEeC-------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccc
Confidence 488999999873 356899999999999999999999999999999999999874 8999999976 3
Q ss_pred Cc---------CCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCcc
Q 046969 110 RV---------DSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWH 177 (697)
Q Consensus 110 ~~---------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~ 177 (697)
.. .++.++|++|++. +.+.+|+.||+.+..... . .....+.++.++++++.+|+. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---- 146 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLP---- 146 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCc----
Confidence 21 1245899999974 456789999997643211 1 111223456788999999996 3566654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.+++|++++|++
T Consensus 147 -~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 147 -RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQ 224 (253)
T ss_pred -hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEEC
Confidence 579999999999999999999999999999999999999999999998764 89999999997 578889999999999
Q ss_pred CeeeeecChhhH
Q 046969 257 GETVYFGEAKLA 268 (697)
Q Consensus 257 G~iv~~G~~~~~ 268 (697)
|++++.|++++.
T Consensus 225 G~i~~~~~~~~~ 236 (253)
T TIGR02323 225 GRVVESGLTDQV 236 (253)
T ss_pred CEEEEECCHHHH
Confidence 999999987654
No 206
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=339.79 Aligned_cols=217 Identities=21% Similarity=0.334 Sum_probs=179.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~- 111 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+|||||||||++|+|.++ +....+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 24 VFDTQNLNLWYG-------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred EEEEeeeEEEEC-------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 699999999873 3469999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++. ||.||+.+....+ .....+..++.+.+.++.+++. +..++ .+..|
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-----~~~~L 168 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHD-----NAYGL 168 (271)
T ss_pred cccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhc-----CcccC
Confidence 13569999999988875 9999999875432 1112223345567777777543 23333 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 79999999997 57888999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 247 ~g~~~~~ 253 (271)
T PRK14238 247 YDDTDKI 253 (271)
T ss_pred eCCHHHH
Confidence 9987754
No 207
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.2e-39 Score=323.82 Aligned_cols=189 Identities=54% Similarity=0.872 Sum_probs=165.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~ 111 (697)
..++++||++.++... +...+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++ .+|+|.++|+++..
T Consensus 2 ~~l~~~~ls~~~~~~~-~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~ 77 (194)
T cd03213 2 VTLSFRNLTVTVKSSP-SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDK 77 (194)
T ss_pred cEEEEEeeEEEEecCC-CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCch
Confidence 3589999999875210 001367999999999999999999999999999999999998 76 48999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++.+|++||+.+...+. .||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv 120 (194)
T cd03213 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRV 120 (194)
T ss_pred HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHH
Confidence 2467999999999999999999998643210 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998779999999999865688899999999999998764
No 208
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-39 Score=323.90 Aligned_cols=189 Identities=45% Similarity=0.798 Sum_probs=163.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-cC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-VD 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~~ 112 (697)
..++++|+++.+++. + .++.+|+|+|+++++||+++|+|||||||||||++|+|+.+.. ..+|+|.++|+++. ..
T Consensus 2 ~~l~~~~l~~~~~~~--~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVK--G-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCC--C-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHh
Confidence 458899999987521 0 1356999999999999999999999999999999999986310 14899999999863 22
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+||+||+.+...++ .||||||||++||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~qrv~la 120 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKRLTIG 120 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhHHHHHH
Confidence 457999999999999999999998753110 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC-Ceeeeec
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG-GETVYFG 263 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~-G~iv~~G 263 (697)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++..++.+.||++++|++ |++++.|
T Consensus 121 ~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999878999999999985357889999999998 9999876
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-39 Score=369.21 Aligned_cols=218 Identities=23% Similarity=0.390 Sum_probs=185.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.+. .+++|+|+|+++++||+++|+|||||||||||++|+|+.+++ ..+|+|.++|+++..
T Consensus 2 l~i~~l~~~~~-------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 2 LEMKGIVKTFG-------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred EEEEeEEEEeC-------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHH
Confidence 68899998873 356999999999999999999999999999999999998751 138999999987632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-CccccCccCCCCCHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCA-DTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~~~~LSGGerq 187 (697)
.++.++||+|++.+++.+||.||+.+........ ....++..++++++++.+||.+.. ++.+ ..|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~q 148 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQ 148 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHH
Confidence 1356999999999999999999998865432111 123344556788999999998654 4544 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999999999988899999999997 57889999999999999999988754
No 210
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.6e-40 Score=379.81 Aligned_cols=213 Identities=31% Similarity=0.426 Sum_probs=179.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.+ |. +|+|.+||.+++.
T Consensus 349 ~i~~~~vsf~~~------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCH
Confidence 599999997542 2467999999999999999999999999999999999999 63 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH-----HHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVD-----GTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.++||+|++.+|+. |++|||.++. | ..++++..+.++ +.++ .|++..||.+|+. ...||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHH
Confidence 24689999999999987 9999999862 1 345555433322 1122 3455679999874 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||++|||||+++|++|+||||||+||+.++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999985 4799999999983 567799999999999999999
Q ss_pred hhhHH
Q 046969 265 AKLAV 269 (697)
Q Consensus 265 ~~~~~ 269 (697)
.++..
T Consensus 567 ~~eL~ 571 (588)
T PRK11174 567 YAELS 571 (588)
T ss_pred HHHHH
Confidence 87654
No 211
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4e-39 Score=337.84 Aligned_cols=223 Identities=24% Similarity=0.288 Sum_probs=185.6
Q ss_pred eEEEEEEEEEecccc-c-cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFG-N-NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~-~-~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
.|+++||++.++... . +..++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 478999999874200 0 001367999999999999999999999999999999999998874 9999999987531
Q ss_pred -------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 112 -------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
.++.++|++|++ .+++..|+.|++.+..... .....++..++++++++.+|+. +..++.+ +.|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----PQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----ccC
Confidence 135699999997 4677899999997754311 1223444556789999999996 4666654 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999875 89999999997 5788899999999999999
Q ss_pred eecChhhH
Q 046969 261 YFGEAKLA 268 (697)
Q Consensus 261 ~~G~~~~~ 268 (697)
+.|++++.
T Consensus 232 ~~g~~~~~ 239 (268)
T PRK10419 232 ETQPVGDK 239 (268)
T ss_pred eeCChhhc
Confidence 99988763
No 212
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-39 Score=335.84 Aligned_cols=222 Identities=23% Similarity=0.268 Sum_probs=184.1
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEec
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKT 109 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~ 109 (697)
.+..+..+++++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|++++. ...+|+|.++|+++
T Consensus 5 ~~~~~~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 5 APIVMDCKLDKIFYG-------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CCceEEEEeEEEEeC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 456788899888762 457999999999999999999999999999999999998651 11489999999875
Q ss_pred Cc-------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 110 RV-------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 110 ~~-------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
.. .++.++|++|++.++ .+|+.||+.+....+. . ..+..+.++++++.++|.+..+...+ ..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCC
Confidence 31 135699999999888 5899999998765431 1 22345678889999998653322221 2456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec-------
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS------- 255 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~------- 255 (697)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 79999999997 47889999999995
Q ss_pred -CCeeeeecChhhH
Q 046969 256 -GGETVYFGEAKLA 268 (697)
Q Consensus 256 -~G~iv~~G~~~~~ 268 (697)
+|++++.|+.++.
T Consensus 230 ~~G~i~~~g~~~~~ 243 (261)
T PRK14263 230 RTGYLVEMGPTAQI 243 (261)
T ss_pred CCceEEEeCCHHHH
Confidence 8999999988754
No 213
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=339.56 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=181.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++||++.++ .++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~ 75 (272)
T PRK15056 5 AGIVVNDVTVTWR------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQAL 75 (272)
T ss_pred ceEEEEeEEEEec------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhh
Confidence 3689999999874 1356999999999999999999999999999999999999874 8999999988632
Q ss_pred CCCeEEEEecCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 DSGVLAYVTQENVLL--GTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+. ...+++|++.+....... ......+.++.++++++.+||.+..|+.++ .||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qr 150 (272)
T PRK15056 76 QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKR 150 (272)
T ss_pred ccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHH
Confidence 124699999997652 234789998754211000 011122334567888999999988888764 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999988899999999997 5788999999887 8999999988753
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-40 Score=335.34 Aligned_cols=211 Identities=28% Similarity=0.430 Sum_probs=172.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 1 i~~~~l~~~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYPG-----DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeCC-----CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHH
Confidence 468899988742 1246999999999999999999999999999999999999874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCcccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKS-----HVDGTILEL--GLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSG 183 (697)
.++.++|++|++.+++ .||+||+.+.... ...++..+ .+++.++.+ ++.+..+.. +..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCH
Confidence 1356999999998887 6999999875421 12222111 234555555 555555543 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++.. ||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999964 899999999984 5654 9999999999999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
++++.
T Consensus 219 ~~~~~ 223 (234)
T cd03251 219 THEEL 223 (234)
T ss_pred CHHHH
Confidence 87754
No 215
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=368.30 Aligned_cols=213 Identities=22% Similarity=0.314 Sum_probs=183.3
Q ss_pred EEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------C
Q 046969 39 ENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV------D 112 (697)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~------~ 112 (697)
+||++.+. ++++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++.. .
T Consensus 2 ~nl~~~~~-------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 2 SNISKSFP-------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CceEEEeC-------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHH
Confidence 57777662 356999999999999999999999999999999999999874 8999999997632 1
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++||+|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.+ ..|||||||||+||
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA 146 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIA 146 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHH
Confidence 3569999999989999999999987542110101233445567889999999988777766 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhh
Confidence 999999999999999999999999999999999988899999999997 57889999999999999999998765
No 216
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=366.93 Aligned_cols=215 Identities=24% Similarity=0.391 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTFP-------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEEC-------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCH
Confidence 588999999873 356999999999999999999999999999999999999874 8999999987631
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++||+|++.+++.+||.||+.+............++.+++++++++.+||.+..++.+ ..||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHH
Confidence 13569999999999999999999998642111111234455667889999999987777765 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999999999988899999999997 578899999999999999876653
No 217
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-39 Score=383.60 Aligned_cols=210 Identities=29% Similarity=0.372 Sum_probs=180.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|. +|+|.+||++++.
T Consensus 451 ~I~~~nvsf~Y~~-----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDV 522 (686)
T ss_pred eEEEEEEEEEcCC-----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCH
Confidence 5999999999852 2467999999999999999999999999999999999999985 9999999998742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.+|||+|++.+|+. |++|||.++.. .++++ +.++++..|+ .+..||.+|+. ...||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LS 590 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLS 590 (686)
T ss_pred HHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCHHH----HHHHHHHcCcHHHHHhccccccccccCC-CCCCC
Confidence 25789999999999987 99999997521 23443 3444555554 34568989864 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|++|+||||||+||+.++..+.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|++++.
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999886 589999999983 5677999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 666 G~~~~Ll 672 (686)
T TIGR03797 666 GTYDELM 672 (686)
T ss_pred CCHHHHH
Confidence 9988754
No 218
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-39 Score=333.19 Aligned_cols=222 Identities=20% Similarity=0.299 Sum_probs=182.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~ 111 (697)
+.++++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.+||.++..
T Consensus 2 ~~l~~~~v~~~~~-------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 2 YRIEVENLNTYFD-------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred cEEEEEeEEEEeC-------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 3588999998763 3569999999999999999999999999999999999864 211248999999987531
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.++|++|++.+++. |+.||+.+..... .....+..++++.++++.+||.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 13579999999988885 9999998865432 11223445677888999999854321111 2234689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++ .++.+.+|++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 89999999997 57899999999999999999999
Q ss_pred hhhH
Q 046969 265 AKLA 268 (697)
Q Consensus 265 ~~~~ 268 (697)
+++.
T Consensus 229 ~~~~ 232 (250)
T PRK14266 229 TDQI 232 (250)
T ss_pred HHHH
Confidence 8764
No 219
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.4e-39 Score=329.63 Aligned_cols=202 Identities=28% Similarity=0.348 Sum_probs=171.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
+..+++++.+ ..+++|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++...
T Consensus 23 l~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV-------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc-------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh----
Confidence 5666666644 3567999999999999999999999999999999999998874 8999999987431
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
..+...+.+.+||+||+.+....+ ..+.++.++.++++++.+||.+..++.+ +.||||||||++||++|
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral 157 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIAT 157 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHH
Confidence 112234567799999999876532 1234455567888999999998888876 47999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 196 LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988789999999997 5788899999999999998765
No 220
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-39 Score=404.56 Aligned_cols=223 Identities=28% Similarity=0.432 Sum_probs=200.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
-.++++||++.++. ..+.+|+|+|+.+++||++||+||||||||||+|+|+|.++++ +|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~~-----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEECC-----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchH
Confidence 35899999998742 2367999999999999999999999999999999999999885 8999999998631
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.+||++|++.+++.+||+|+|.+.++++ ..+.++.+++++++++.+||.+.+|++++ .|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHH
Confidence 2457999999999999999999999987765 23455566788999999999999998775 7999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
+||+||+.+|+|+||||||+|||+.++..+.+.|++++++|+|||+|+|++ +++.++|||+++|.+|+++..|++++..
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999988899999999997 6899999999999999999999999887
Q ss_pred HHHH
Q 046969 270 EFFA 273 (697)
Q Consensus 270 ~~f~ 273 (697)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 7664
No 221
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8.8e-39 Score=331.00 Aligned_cols=225 Identities=29% Similarity=0.376 Sum_probs=181.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc--
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~-- 111 (697)
++++||++.++ .+.+|+|+|+.+++||+++|+|||||||||||++|+|+. ++ .+|+|.++|+++..
T Consensus 2 i~~~nl~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~ 71 (248)
T PRK09580 2 LSIKDLHVSVE-------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELS 71 (248)
T ss_pred eEEEEEEEEeC-------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCC
Confidence 68899998873 356999999999999999999999999999999999995 45 48999999987531
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhh-ccC--C-CCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCC
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAH-LRL--P-SSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 182 (697)
.+..++|++|++.+++.+|+.+++.+... ++. . ......+..+.++++++.+++. +..++.+. +.||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS 147 (248)
T PRK09580 72 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFS 147 (248)
T ss_pred HHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCC
Confidence 12469999999999988888877654321 110 0 0112223456778889999995 44555432 3699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh-ccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL-FDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~iv~ 261 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+... +|++++|++|++++
T Consensus 148 ~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 148 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999888899999999974 56665 89999999999999
Q ss_pred ecChhhHHHHHHhcC
Q 046969 262 FGEAKLAVEFFAEAG 276 (697)
Q Consensus 262 ~G~~~~~~~~f~~~g 276 (697)
.|+.+.+ ..+...+
T Consensus 227 ~g~~~~~-~~~~~~~ 240 (248)
T PRK09580 227 SGDFTLV-KQLEEQG 240 (248)
T ss_pred eCCHHHH-HHHHhcC
Confidence 9998754 3344333
No 222
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-40 Score=355.44 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=184.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++|+|+++.+. ++++||+++||+|++||-+||+|+|||||||+||+|.+..+. +|+|++||++++.
T Consensus 351 ~I~F~dV~f~y~------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 351 SIEFDDVHFSYG------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSL 420 (591)
T ss_pred cEEEEeeEEEeC------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhCh
Confidence 499999999884 356799999999999999999999999999999999999873 8999999999742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHH--cCCCcccCccccCccCCCCCHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-ILE--LGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.|||||||..||.+ ||.+||.|+.. ..+.++..+.++.. +++ ..+++..+|.||+. ...||||||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGek 493 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEK 493 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccccchH
Confidence 25789999999999987 99999998742 34555544433221 111 24566788889974 456999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|||+||||+++||+|+++|||||.||+.+..++++.+.+ ...|+|+|++.|+. ....-||+|++|++|++...|+.+
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ 570 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHS 570 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHH
Confidence 999999999999999999999999999999999999999 45689999999996 467889999999999999999998
Q ss_pred hHHH
Q 046969 267 LAVE 270 (697)
Q Consensus 267 ~~~~ 270 (697)
+.+.
T Consensus 571 ell~ 574 (591)
T KOG0057|consen 571 ELLA 574 (591)
T ss_pred HHhh
Confidence 8765
No 223
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.1e-39 Score=335.84 Aligned_cols=214 Identities=30% Similarity=0.463 Sum_probs=170.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. + .++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~---~-~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS---R-PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC---C-CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHH
Confidence 468899988742 1 1356999999999999999999999999999999999999874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCcccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKS-----HVDGTILEL--GLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSG 183 (697)
.++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....++ .++.|||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~ 142 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSG 142 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCH
Confidence 1356999999998886 59999998753211 1121111 112222332 33333333 3468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999997 7999999999974 554 89999999999999999
Q ss_pred ChhhHHH
Q 046969 264 EAKLAVE 270 (697)
Q Consensus 264 ~~~~~~~ 270 (697)
+.++..+
T Consensus 220 ~~~~~~~ 226 (238)
T cd03249 220 THDELMA 226 (238)
T ss_pred CHHHHhh
Confidence 8775443
No 224
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-39 Score=326.35 Aligned_cols=201 Identities=25% Similarity=0.348 Sum_probs=175.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++|+++.++ ++.+++++|+.+++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSRN-------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEecC-------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchh
Confidence 4689999998763 356999999999999999999999999999999999999875 8999999987642
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+|+.||+.+....+. .. .++.++++++.++|.+..++.+ ..||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHH
Confidence 23469999999999999999999988754421 11 2345678889999988777766 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
|++++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.+++|++++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999988899999999997 578999999999863
No 225
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=376.59 Aligned_cols=214 Identities=27% Similarity=0.384 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .++.+|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+.+.
T Consensus 341 ~i~~~~vsf~y~~-----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 341 DIEFRNVTFTYPG-----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTL 412 (582)
T ss_pred eEEEEEEEEecCC-----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCH
Confidence 5999999998752 2467999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++. +...++++. +++++..| |++..||.+|+. .+.||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~~i----~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LS 482 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSREQI----EEAARMAYAMDFINKMDNGLDTVIGEN-GVLLS 482 (582)
T ss_pred HHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHHHH----HHHHHHhCcHHHHHhcccccCceeCCC-CCcCC
Confidence 24679999999999986 9999998752 222344443 33444444 455679999864 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+|+++|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|++ +..+.||+|++|++|++++.
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVER 559 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999754 79999999998 35778999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 560 g~~~~l~ 566 (582)
T PRK11176 560 GTHAELL 566 (582)
T ss_pred CCHHHHH
Confidence 9987654
No 226
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=334.93 Aligned_cols=215 Identities=26% Similarity=0.375 Sum_probs=180.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE------ECCEe
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVL------FNGKK 108 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~------~nG~~ 108 (697)
.+.++|+++.++ ++.+|+|+|+.+++||+++|+|||||||||||++|+|..++. +|+|. ++|++
T Consensus 10 ~i~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYIN-------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEecC-------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcc
Confidence 489999999863 467999999999999999999999999999999999998864 55554 44554
Q ss_pred cC-----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCC
Q 046969 109 TR-----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLR 179 (697)
Q Consensus 109 ~~-----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~ 179 (697)
.. ..++.++|++|++.+++.+||.||+.+...... ...+++.++.++++++.+++.+ ..++ .++
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 152 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS-----PAS 152 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-----Ccc
Confidence 32 113569999999999999999999998754321 1234455667889999999964 3344 346
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++++ +.|||+++|++ ..+.++||++++|++|++
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGEL 230 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999965 69999999997 578899999999999999
Q ss_pred eeecChhhH
Q 046969 260 VYFGEAKLA 268 (697)
Q Consensus 260 v~~G~~~~~ 268 (697)
+..|++++.
T Consensus 231 ~~~g~~~~~ 239 (257)
T PRK14246 231 VEWGSSNEI 239 (257)
T ss_pred EEECCHHHH
Confidence 999988754
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-39 Score=336.55 Aligned_cols=216 Identities=22% Similarity=0.278 Sum_probs=179.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~- 110 (697)
..|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~~-------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 19 SVFEVEGVKVFYG-------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred ceEEEeeEEEEeC-------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 4699999999873 356999999999999999999999999999999999997531 124899999998752
Q ss_pred ------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----cccCccccCccCCC
Q 046969 111 ------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH----DCADTVIGNWHLRG 180 (697)
Q Consensus 111 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~ 180 (697)
..++.++|++|+..+++. ||.||+.+....+. .. .+.++.+++.++.+++. +..++ .+..
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 161 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKE-----KGTA 161 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcC-----Cccc
Confidence 113579999999988875 99999988654321 11 12234466777777774 33344 3468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec-----
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS----- 255 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~----- 255 (697)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++ +++.+++|++++|+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~ 239 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDE 239 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999975 79999999997 57889999999997
Q ss_pred ----CCeeeeecChhhH
Q 046969 256 ----GGETVYFGEAKLA 268 (697)
Q Consensus 256 ----~G~iv~~G~~~~~ 268 (697)
+|++++.|++++.
T Consensus 240 ~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 240 YGKRRGKLVEFSPTEQM 256 (274)
T ss_pred ccccCceEEEeCCHHHH
Confidence 8999999999865
No 228
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=331.97 Aligned_cols=217 Identities=22% Similarity=0.286 Sum_probs=186.0
Q ss_pred ceEEEEEEEEEeccccc-------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 046969 34 TFLVWENLFAVLPNFGN-------------NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG 100 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~-------------~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G 100 (697)
+.++++||+++++.... ....+.+|+++|+++++||+++|+|||||||||||++|+|++++. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 57889999988765310 113457999999999999999999999999999999999999874 89
Q ss_pred EEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCC
Q 046969 101 NVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 101 ~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
+|.++|. ++++.|+..+.+.+||.||+.+..... ..+.++..+.++++++.++|.+..++.+ +.
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 457788877888899999998765432 2334555666788888899988777755 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
||||||||++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++ .++.+++|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999997 5788999999999999999
Q ss_pred eecChhhHHH
Q 046969 261 YFGEAKLAVE 270 (697)
Q Consensus 261 ~~G~~~~~~~ 270 (697)
+.|+.++..+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999876544
No 229
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.3e-39 Score=329.35 Aligned_cols=207 Identities=31% Similarity=0.457 Sum_probs=171.7
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 3 IEFRNVSFSYPN-----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPA 74 (220)
T ss_pred EEEEEEEEEcCC-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHH
Confidence 788999987632 1356999999999999999999999999999999999998874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCcccc------CccCCCCCHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIG------NWHLRGISGG 184 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGG 184 (697)
.++.++|++|++.+++ .||.||+.+.... .. .+.+.++++.+++.+..++... ...+..||||
T Consensus 75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred HHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHH
Confidence 1356999999998887 5999999874211 11 2335567778888776665431 1134689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++. .+ +++|++++|++|++++.|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999998764 89999999974 44 799999999999998764
No 230
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-39 Score=332.17 Aligned_cols=211 Identities=27% Similarity=0.413 Sum_probs=169.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYDE------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecCC------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCH
Confidence 4789999988631 246999999999999999999999999999999999999874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCc-------cccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADT-------VIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LS 182 (697)
.++.++|++|++.+++. ||.||+.+.... ...+ .+++.++.+++.+..+. .. +..++.||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDE----EVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHH----HHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 13569999999988876 999999875321 1111 22333333343322221 11 12346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||||+||++|+.+|++++|||||+|||+.++..+++.|++++ +|+|||+++|++. ++ +.||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 5899999999974 55 46999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|+.++.
T Consensus 219 ~~~~~~ 224 (229)
T cd03254 219 GTHDEL 224 (229)
T ss_pred CCHHHH
Confidence 887654
No 231
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-39 Score=372.43 Aligned_cols=224 Identities=22% Similarity=0.292 Sum_probs=189.9
Q ss_pred ceEEEEEEEEEeccccc----cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 046969 34 TFLVWENLFAVLPNFGN----NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~----~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 109 (697)
..|+++||++.++.... ....+.+|+||||.+++||+++|+||||||||||+++|+|++++. +|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 35999999998842100 001246999999999999999999999999999999999999874 89999999875
Q ss_pred Cc--------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccC
Q 046969 110 RV--------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHL 178 (697)
Q Consensus 110 ~~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~ 178 (697)
.. .++.++||+|++ .+++.+||.|++.+....+ .....++.+++++++++.+||. +.+++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 31 135699999997 5899999999999865432 1113445567789999999996 5667765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
.+|||||||||+||++|+.+|++|||||||+|||..++.++++.|++++++ |.|||++||++ ..+.++||+|++|.+|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999997 5788999999999999
Q ss_pred eeeeecChhhH
Q 046969 258 ETVYFGEAKLA 268 (697)
Q Consensus 258 ~iv~~G~~~~~ 268 (697)
++++.|+++++
T Consensus 541 ~iv~~g~~~~i 551 (623)
T PRK10261 541 QIVEIGPRRAV 551 (623)
T ss_pred EEEEecCHHHH
Confidence 99999998865
No 232
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.1e-39 Score=322.52 Aligned_cols=197 Identities=27% Similarity=0.348 Sum_probs=170.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|.+++. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 2 LEARNLACERD-------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDE 71 (204)
T ss_pred eEEEEEEEEEC-------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHH
Confidence 67899998873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||.||+.+....+. . +..++++++++.+||.+..|+.+ ..||||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~l 140 (204)
T PRK13538 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVAL 140 (204)
T ss_pred hhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHH
Confidence 23569999999999999999999998764421 1 22356788999999988777765 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
|++|+.+|++++|||||+|||+.+...+.+.|++++++|.|||+++|++ .++.+.-+|++.+
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999999999987889999999997 4676766777666
No 233
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=372.85 Aligned_cols=220 Identities=25% Similarity=0.313 Sum_probs=187.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT----- 109 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~----- 109 (697)
.|+++||++.+.. ....+++|+||||++++||++||+||||||||||+++|+|++++. +|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~---~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQ---EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecC---CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccc
Confidence 5999999998842 111357999999999999999999999999999999999999874 89999998632
Q ss_pred --------C------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccC
Q 046969 110 --------R------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD---CAD 170 (697)
Q Consensus 110 --------~------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d 170 (697)
. ...+.+|||+|++ .+++.+||.||+.+..+... ..+.++.+++++++++.+||.+ ..+
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 0 0124699999997 68899999999999865421 2345566778899999999964 355
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhcc
Q 046969 171 TVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFD 249 (697)
Q Consensus 171 ~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D 249 (697)
+.+ .+|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++++ |+|||+++|++ .++.++||
T Consensus 164 ~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~ad 237 (623)
T PRK10261 164 RYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIAD 237 (623)
T ss_pred CCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCC
Confidence 544 579999999999999999999999999999999999999999999999865 99999999997 57889999
Q ss_pred ceeeecCCeeeeecChhhH
Q 046969 250 DLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 250 ~v~lL~~G~iv~~G~~~~~ 268 (697)
||++|++|++++.|++++.
T Consensus 238 ri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEEeeCCeecccCCHHHh
Confidence 9999999999999998754
No 234
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.4e-39 Score=332.56 Aligned_cols=198 Identities=29% Similarity=0.412 Sum_probs=173.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CCCeEEEEecCCCCCCCCCH
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----DSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~l~~~lTV 131 (697)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|+++.. .++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999853 7999999997632 12458999999888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh-------CCCEEEE
Q 046969 132 RETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT-------KPQLLFL 204 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~-------~P~lllL 204 (697)
.||+.+.... ....++..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|+|
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886322 1223344567889999999988777765 5799999999999999997 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987899999999997 578899999999999999999987653
No 235
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.1e-39 Score=372.62 Aligned_cols=211 Identities=25% Similarity=0.334 Sum_probs=182.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+++.
T Consensus 340 ~i~~~~v~f~y~~------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 340 RIDIDNVSFAYRD------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSH 410 (592)
T ss_pred eEEEEEEEEEeCC------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCH
Confidence 5899999998752 356999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------cccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-------DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++. ..++++ ++++++..|+. +..||.+|+ ....||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~~----i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LS 478 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISEEQ----VWQALETVQLAELARSLPDGLYTPLGE-QGNNLS 478 (592)
T ss_pred HHHHhheEEEccCCccccc-hHHHHHHhCC------CCCHHH----HHHHHHHcCcHHHHHhccccccccccC-CCCCCC
Confidence 25789999999999998 9999999863 123333 45566666644 456888876 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++++ ++|+|+++|++ +....||+|++|++|+++..
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 69999999998 35677999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 556 G~~~~L~ 562 (592)
T PRK10790 556 GTHQQLL 562 (592)
T ss_pred cCHHHHH
Confidence 9998764
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.7e-39 Score=366.11 Aligned_cols=218 Identities=25% Similarity=0.360 Sum_probs=185.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEEC--------
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVIMTGNVLFN-------- 105 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~n-------- 105 (697)
|+++||++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++ .+|+|.++
T Consensus 1 l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~ 70 (520)
T TIGR03269 1 IEVKNLTKKFD-------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCG 70 (520)
T ss_pred CEEEEEEEEEC-------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEecccccccc
Confidence 46889998873 356999999999999999999999999999999999996 45 38999997
Q ss_pred ---------------CEec--------C-------cCCCeEEEEecC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH
Q 046969 106 ---------------GKKT--------R-------VDSGVLAYVTQE-NVLLGTLTVRETITYSAHLRLPSSMSKEDIKS 154 (697)
Q Consensus 106 ---------------G~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~ 154 (697)
|.++ . ..++.++||+|+ +.+++.+||+||+.+..... ..+.++.++
T Consensus 71 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 147 (520)
T TIGR03269 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVG 147 (520)
T ss_pred ccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 2211 0 013469999997 67889999999999875432 233455567
Q ss_pred HHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 046969 155 HVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTV 233 (697)
Q Consensus 155 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tv 233 (697)
+++++++.+||++..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+||
T Consensus 148 ~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 148 RAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 8899999999988777765 47999999999999999999999999999999999999999999999976 48999
Q ss_pred EEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHH
Q 046969 234 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFF 272 (697)
Q Consensus 234 i~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f 272 (697)
|+++|++ ..+.++||++++|++|++++.|++++..+.+
T Consensus 223 iivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 223 VLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999997 5678899999999999999999887765543
No 237
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.4e-39 Score=327.73 Aligned_cols=207 Identities=25% Similarity=0.364 Sum_probs=173.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLAG-------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEeeC-------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCH
Confidence 589999998863 356999999999999999999999999999999999998874 8999999987532
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++. ||+||+.+....+. ... .+++++++++.+|+. ...++.+ +.||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQP--DPAIFLDDLERFALPDTILTKNI-----AELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CCh--HHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHH
Confidence 13579999999988875 99999988654331 111 134577899999995 4566654 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeec-CCeeeeecC
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLS-GGETVYFGE 264 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~-~G~iv~~G~ 264 (697)
|+||++|+.+|++++|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++ +.||++++|. ++..+.+|.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999999874 899999999974 55 5799999995 555555554
No 238
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.8e-39 Score=374.58 Aligned_cols=217 Identities=31% Similarity=0.480 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ ++++|+|+|++++|||.+||+||||||||||++.|+|.+++. +|+|.+||.+++.
T Consensus 328 ~I~f~~vsf~y~~------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~ 398 (567)
T COG1132 328 SIEFENVSFSYPG------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISL 398 (567)
T ss_pred eEEEEEEEEEcCC------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCH
Confidence 4999999998752 578999999999999999999999999999999999999984 9999999998752
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHH--cCCCcccCccccCccCCCCCHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-ILE--LGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++||+|++.+|.. ||+|||.++.. ..++++..+.++.. +++ ..+.+..||.+|+ ....||||||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQr 471 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSG-TIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQR 471 (567)
T ss_pred HHHHHhccEEcccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHH
Confidence 25789999999999995 99999998742 24556655444333 122 2456678999994 5567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||++||||++++|++|+||||||+||+.+...|.+.++++. +|+|+|+++|+++ .+.+ +|+|++|++|++++.|+.+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999877 5789999999984 4544 9999999999999999998
Q ss_pred hHHH
Q 046969 267 LAVE 270 (697)
Q Consensus 267 ~~~~ 270 (697)
+...
T Consensus 549 eLl~ 552 (567)
T COG1132 549 ELLA 552 (567)
T ss_pred HHHH
Confidence 7654
No 239
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-39 Score=314.59 Aligned_cols=169 Identities=34% Similarity=0.543 Sum_probs=153.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.+||++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYG-------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEEC-------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHh
Confidence 46889998763 246999999999999999999999999999999999998874 8999999987532
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+|+.||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 2357999999999999999999873 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999988899999999997 478889999999999874
No 240
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-38 Score=398.29 Aligned_cols=222 Identities=28% Similarity=0.393 Sum_probs=197.7
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
...|+++||++.+++ +++.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~-----~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~ 997 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETN 997 (2272)
T ss_pred CceEEEEeEEEEecC-----CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcch
Confidence 357999999998742 2467999999999999999999999999999999999999885 9999999998642
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.+||++|++.+++.+||+|+|.|.++++. .+.++.+++++++++.+||++.+|+.+ +.||||||||
T Consensus 998 ~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQR 1069 (2272)
T TIGR01257 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRK 1069 (2272)
T ss_pred HHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 24679999999999999999999999877652 334555678999999999999888876 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|+||+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++..++||+++|++|+++..|++...
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999995 599999999997 578899999999999999999999887
Q ss_pred HHHH
Q 046969 269 VEFF 272 (697)
Q Consensus 269 ~~~f 272 (697)
.+.|
T Consensus 1148 k~~~ 1151 (2272)
T TIGR01257 1148 KNCF 1151 (2272)
T ss_pred HHhc
Confidence 6655
No 241
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=333.52 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=178.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSR--HVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|++++ ....+|+|.++|+++..
T Consensus 10 ~l~i~~v~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 10 VLRTENLNVYYG-------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred EEEEeeeEEEEC-------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 589999999873 34699999999999999999999999999999999998752 11248999999987521
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccCCCC
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++. ||.||+.+....+ ... .+..+.++++++.+++.+ ..++ .+..|
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~L 152 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQ-----SGLSL 152 (264)
T ss_pred ccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcC-----CcccC
Confidence 13569999999988884 9999998875432 111 223455667777777743 2333 34679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec------
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS------ 255 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~------ 255 (697)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~ 230 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEG 230 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999976 58999999997 57899999999998
Q ss_pred ---CCeeeeecChhhH
Q 046969 256 ---GGETVYFGEAKLA 268 (697)
Q Consensus 256 ---~G~iv~~G~~~~~ 268 (697)
+|++++.|++++.
T Consensus 231 ~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 231 GGRYGYLVEFDRTEKI 246 (264)
T ss_pred cccCceEEEeCCHHHH
Confidence 8999999998765
No 242
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-38 Score=324.07 Aligned_cols=208 Identities=23% Similarity=0.333 Sum_probs=171.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecCc
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN--GK--KTRV 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n--G~--~~~~ 111 (697)
++++||++.+.....+...+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 688999998742111101257999999999999999999999999999999999999874 8999998 42 3210
Q ss_pred ---------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCC
Q 046969 112 ---------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+||.+ ..++.+ ++|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP-----ATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----ccC
Confidence 1246999999999999999999998865432 2333445567888999999976 345544 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987899999999995 56778999998764
No 243
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.2e-39 Score=380.74 Aligned_cols=212 Identities=27% Similarity=0.399 Sum_probs=180.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+++.
T Consensus 477 ~I~~~~vsf~y~~-----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 477 YVELRNITFGYSP-----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPR 548 (710)
T ss_pred eEEEEEEEEecCC-----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCH
Confidence 5999999999853 2467999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++. | ..++++. .+.++..|+ .+..||.+|+. ...||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~~i----~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LS 617 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDADL----VRACKDAAIHDVITSRPGGYDAELAEG-GANLS 617 (710)
T ss_pred HHHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHHHH----HHHHHHhCCHHHHHhCcCcccceeccC-CCCCC
Confidence 25789999999999976 9999998742 1 2344443 334444443 44578888864 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|++|+||||||+||+.++..+++.|++ .++|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999986 4899999999984 4567999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|+.++..+
T Consensus 693 G~~~~Ll~ 700 (710)
T TIGR03796 693 GTHEELWA 700 (710)
T ss_pred cCHHHHHH
Confidence 99887654
No 244
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.9e-39 Score=321.14 Aligned_cols=194 Identities=26% Similarity=0.351 Sum_probs=169.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCERD-------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEeC-------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHH
Confidence 46789998763 356999999999999999999999999999999999999874 8999999987531
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||+||+.+.... . ..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHH
Confidence 235799999999999999999999885321 1 1345788899999988777765 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
|++|+.+|++++|||||+|||+.+...+.+.|++++++|+|+|+++|++ .++...+|+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 9999999999999999999999999999999999988899999999997 4678899999887
No 245
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=331.56 Aligned_cols=218 Identities=20% Similarity=0.290 Sum_probs=180.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV--IMTGNVLFNGKKTR- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~- 110 (697)
-.|+++||++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYG-------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEEC-------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 3589999999873 3469999999999999999999999999999999999986411 14899999997642
Q ss_pred --------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----ccCccccCccC
Q 046969 111 --------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD----CADTVIGNWHL 178 (697)
Q Consensus 111 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~ 178 (697)
..++.++|++|++.+++. ||+||+.+...... ....+..++.++++++.+++.+ ..++. +
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~ 159 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLGDL-----A 159 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHhCC-----c
Confidence 113569999999999886 99999988754321 1112233456777888887742 23333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+
T Consensus 160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~ 237 (265)
T PRK14252 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGE 237 (265)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999976 69999999997 57889999999999999
Q ss_pred eeeecChhhH
Q 046969 259 TVYFGEAKLA 268 (697)
Q Consensus 259 iv~~G~~~~~ 268 (697)
++..|+.++.
T Consensus 238 i~~~g~~~~~ 247 (265)
T PRK14252 238 LIEFGATDTI 247 (265)
T ss_pred EEEeCCHHHH
Confidence 9999988753
No 246
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.1e-39 Score=354.25 Aligned_cols=226 Identities=25% Similarity=0.322 Sum_probs=193.9
Q ss_pred ccceEEEEEEEEEecccc---cc-ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 046969 32 RGTFLVWENLFAVLPNFG---NN-KPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~---~~-~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~ 107 (697)
....|+.+||++.+...+ .+ .....+++||||.+++||++||+|+||||||||.++|+|+++|. +|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCc
Confidence 345689999999887421 11 13457899999999999999999999999999999999999984 899999998
Q ss_pred ecC-------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCcc
Q 046969 108 KTR-------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWH 177 (697)
Q Consensus 108 ~~~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~ 177 (697)
+.. ..++.+-+|+||+ .|.|.+||+++|.-......+ ....+.++++.++++.+||.. .+++ +
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~r-----y 426 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDR-----Y 426 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhc-----C
Confidence 721 1235678888886 689999999999988765533 235667788999999999985 4555 5
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
+.+||||||||++|||||+.+|++|++|||||.||+..+.+|++.|+++.++ |.|.|+++||. ..+..+||||.+|.+
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~ 505 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYD 505 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEEC
Confidence 5789999999999999999999999999999999999999999999999986 99999999997 578999999999999
Q ss_pred CeeeeecChhhH
Q 046969 257 GETVYFGEAKLA 268 (697)
Q Consensus 257 G~iv~~G~~~~~ 268 (697)
|++|+.||.+++
T Consensus 506 G~iVE~G~~~~v 517 (539)
T COG1123 506 GRIVEEGPTEKV 517 (539)
T ss_pred CeEEEeCCHHHH
Confidence 999999988755
No 247
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-38 Score=363.67 Aligned_cols=223 Identities=26% Similarity=0.370 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~- 111 (697)
.++++||++.++. .+ ..+.+|+|+|+++++||++||+|||||||||||++|+|.+++. ...+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~--~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 5 LLAIENLSVAFRQ--QQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred eEEEeceEEEecC--CC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 4899999998742 01 1357999999999999999999999999999999999998751 1148999999987531
Q ss_pred --------CCCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccCccccCccC
Q 046969 112 --------DSGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD---CADTVIGNWHL 178 (697)
Q Consensus 112 --------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~ 178 (697)
.++.+|||+|++. +++.+||+|++.+..... ...+..+..++++++++.+||.+ ..|+.+
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----- 154 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYP----- 154 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC-----
Confidence 1246999999974 677789999988654321 12345556678899999999975 346655
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||||++|++|
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNG 233 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999997 5788899999999999
Q ss_pred eeeeecChhhH
Q 046969 258 ETVYFGEAKLA 268 (697)
Q Consensus 258 ~iv~~G~~~~~ 268 (697)
++++.|++++.
T Consensus 234 ~i~~~g~~~~~ 244 (529)
T PRK15134 234 RCVEQNRAATL 244 (529)
T ss_pred EEEEeCCHHHH
Confidence 99999988754
No 248
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-39 Score=380.03 Aligned_cols=221 Identities=32% Similarity=0.509 Sum_probs=187.3
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
.-.++++|+.++++. +++..||+|+|+.+++|+.+||+|||||||||++++|.+.++|. +|+|++||.+++.
T Consensus 348 ~g~ief~nV~FsYPs----Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPS----RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNL 420 (1228)
T ss_pred ccceEEEEEEecCCC----CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhc
Confidence 346999999999974 24678999999999999999999999999999999999999985 9999999998742
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH---HHHcCCCcccCccccCccCCCCCHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT---ILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~---l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.+..||.|.|+|.||.. |++||+.|+. .+.+.++..+..+.. --...|.+..||.+|+..+ +||||
T Consensus 421 ~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGG 493 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQEPVLFAT-TIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGG 493 (1228)
T ss_pred chHHHHhhcCeeeechhhhcc-cHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChH
Confidence 25789999999999876 9999999863 234455443332111 1123577889999998554 49999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||++|||||+.||+|||||||||+||+.+...|.+.|+++ .+|+|.|+++|+.+ .+.+ +|+|++|++|++|+.|.
T Consensus 494 QKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 494 QKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGT 570 (1228)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999885 45899999999975 5655 99999999999999999
Q ss_pred hhhHHH
Q 046969 265 AKLAVE 270 (697)
Q Consensus 265 ~~~~~~ 270 (697)
.++.+.
T Consensus 571 h~ELi~ 576 (1228)
T KOG0055|consen 571 HDELIA 576 (1228)
T ss_pred HHHHHh
Confidence 998764
No 249
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.2e-39 Score=365.66 Aligned_cols=223 Identities=25% Similarity=0.360 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeccccc----cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 046969 35 FLVWENLFAVLPNFGN----NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~----~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 110 (697)
.++++||++.++.... ....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ . +|+|.++|+++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5899999998742000 0013579999999999999999999999999999999999985 3 899999998753
Q ss_pred c--------CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCC
Q 046969 111 V--------DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLR 179 (697)
Q Consensus 111 ~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~ 179 (697)
. .++.++||+|++ .+++.+||.||+.+....+.. ....++.+++++++++.+||. +..++.+ .
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----A 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----c
Confidence 1 134699999996 488899999999987543211 123344556788999999997 4667755 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 89999999997 57889999999999999
Q ss_pred eeeecChhhH
Q 046969 259 TVYFGEAKLA 268 (697)
Q Consensus 259 iv~~G~~~~~ 268 (697)
++..|+++++
T Consensus 504 i~~~~~~~~~ 513 (529)
T PRK15134 504 VVEQGDCERV 513 (529)
T ss_pred EEEEcCHHHH
Confidence 9999988754
No 250
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-38 Score=363.58 Aligned_cols=220 Identities=22% Similarity=0.332 Sum_probs=185.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---c
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN-GKK---T 109 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n-G~~---~ 109 (697)
..|+++||++.++.. +...+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++ |.+ .
T Consensus 278 ~~l~~~~l~~~~~~~--~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV--DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC--CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccc
Confidence 369999999987421 102356999999999999999999999999999999999999874 8999996 532 1
Q ss_pred C--------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----ccCccccCc
Q 046969 110 R--------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-----CADTVIGNW 176 (697)
Q Consensus 110 ~--------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~d~~vg~~ 176 (697)
. ..++.++||+|++.+++.+||.||+.+...+. ...++.+++++++++.+||.+ ..++.+
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 425 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP--- 425 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh---
Confidence 1 11346999999999999999999998864332 223334567889999999975 356654
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeec
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++ .++.++||++++|+
T Consensus 426 --~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~ 502 (520)
T TIGR03269 426 --DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMR 502 (520)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999875 89999999997 57889999999999
Q ss_pred CCeeeeecChhhH
Q 046969 256 GGETVYFGEAKLA 268 (697)
Q Consensus 256 ~G~iv~~G~~~~~ 268 (697)
+|++++.|+++++
T Consensus 503 ~G~i~~~g~~~~~ 515 (520)
T TIGR03269 503 DGKIVKIGDPEEI 515 (520)
T ss_pred CCEEEEECCHHHH
Confidence 9999999988764
No 251
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=308.46 Aligned_cols=216 Identities=26% Similarity=0.395 Sum_probs=190.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+.+||.+.+ +...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|. .|.|.+||+.++.
T Consensus 6 ~l~v~dlHK~~-------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY-------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc-------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeC
Confidence 46777777655 4678999999999999999999999999999999999988875 8999999987521
Q ss_pred --------C-------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCc
Q 046969 112 --------D-------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNW 176 (697)
Q Consensus 112 --------~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 176 (697)
. +...++|+|+..|++.+||.||+.-+.---+ ..++.+..++++..+..+|+.+.+|.+.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP--- 150 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYP--- 150 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCc---
Confidence 0 1347999999999999999999876532211 4578888899999999999999888654
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
..|||||+||++|||||+.+|+++++|||||.|||.-.-++++.+++||++|+|.+++||.. ....+...+|+.|.+
T Consensus 151 --~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~ 227 (256)
T COG4598 151 --AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQ 227 (256)
T ss_pred --cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeec
Confidence 57999999999999999999999999999999999999999999999999999999999997 467789999999999
Q ss_pred CeeeeecChhhH
Q 046969 257 GETVYFGEAKLA 268 (697)
Q Consensus 257 G~iv~~G~~~~~ 268 (697)
|.+-++|+|+++
T Consensus 228 G~iEE~G~P~qv 239 (256)
T COG4598 228 GKIEEEGPPEQV 239 (256)
T ss_pred ceecccCChHHH
Confidence 999999999854
No 252
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6e-39 Score=370.44 Aligned_cols=214 Identities=29% Similarity=0.472 Sum_probs=183.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++|+++.+++ .++.+|+|+|++++|||.+||+||||||||||+++|+|.+++. +|+|.+||.+++.
T Consensus 337 ~~i~~~~v~f~y~~-----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYS 408 (574)
T ss_pred CeEEEEEEEEECCC-----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCC
Confidence 35999999998752 2356999999999999999999999999999999999999885 8999999998642
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc------ccCccccCccCCCCC
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD------CADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++||+.++. | ..+++ .+.+.++..++.+ ..||.+|+ ....||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LS 477 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSA-TLRDNLLLAA----P-NASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLS 477 (574)
T ss_pred HHHHHhheeEEcccchhhcc-cHHHHhhcCC----C-ccCHH----HHHHHHHHcCCHHHHcCccccCchhcC-CCCCCC
Confidence 24679999999999986 9999998853 1 22333 3556667777654 46888886 456799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ . .+.+|++++|++|++++.
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 4899999999984 3 466999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 555 g~~~~l~ 561 (574)
T PRK11160 555 GTHQELL 561 (574)
T ss_pred CCHHHHH
Confidence 9987654
No 253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-39 Score=329.71 Aligned_cols=210 Identities=30% Similarity=0.448 Sum_probs=167.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.++. +|+|.+||.++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYDP------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeCC------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHH
Confidence 468899987631 356999999999999999999999999999999999999874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCcccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKS-----HVDGTILEL--GLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSG 183 (697)
.++.++|++|+..+++ .||+||+.+.... .+.++..+ .+++.++.+ +++...++ .++.|||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-----~~~~LS~ 140 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE-----RGLKLSG 140 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCH
Confidence 1356999999998886 6999999875321 12222111 112222222 23322222 3468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++. .||++++|++|++++.|
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERG 217 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeC
Confidence 999999999999999999999999999999999999999999987 999999999974 554 59999999999999998
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
+.++.
T Consensus 218 ~~~~~ 222 (236)
T cd03253 218 THEEL 222 (236)
T ss_pred CHHHH
Confidence 87653
No 254
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-38 Score=335.56 Aligned_cols=224 Identities=25% Similarity=0.351 Sum_probs=180.9
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~ 111 (697)
..|+++||++.++ .+.+|+++|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~-------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 44 AKLSVEDLDVYYG-------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred ceEEEEEEEEEeC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3689999999873 356999999999999999999999999999999999997520 0248999999987531
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC---------CCC-HHHHHHHHHHHHHHcCCCcccCcccc
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS---------SMS-KEDIKSHVDGTILELGLHDCADTVIG 174 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~---------~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg 174 (697)
.++.++|++|++.+++. ||+||+.+....+... ... .+..++.++++++.+++.+......
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred ccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 13569999999988874 9999999875432100 011 1233566888999998853222222
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccce-ee
Q 046969 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDL-FL 253 (697)
Q Consensus 175 ~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v-~l 253 (697)
+..++.|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+.++||++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~ 272 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVF 272 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEE
Confidence 224568999999999999999999999999999999999999999999999987 48999999997 5788999997 57
Q ss_pred ecCCeeeeecChhhH
Q 046969 254 LSGGETVYFGEAKLA 268 (697)
Q Consensus 254 L~~G~iv~~G~~~~~ 268 (697)
|++|++++.|++++.
T Consensus 273 l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 273 LTGGELVEYDDTDKI 287 (305)
T ss_pred ecCCEEEEeCCHHHH
Confidence 899999999988754
No 255
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-38 Score=329.05 Aligned_cols=201 Identities=27% Similarity=0.439 Sum_probs=173.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++.+. ++.+|+++|+++++||+++|+|||||||||||++|+|++++. +|+|.++|. .
T Consensus 4 ~l~~~~l~~~~~-------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~ 67 (251)
T PRK09544 4 LVSLENVSVSFG-------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------L 67 (251)
T ss_pred EEEEeceEEEEC-------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------c
Confidence 588999999873 356999999999999999999999999999999999999874 899999872 3
Q ss_pred eEEEEecCCCCCCCC--CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTL--TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~l--TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
.++|++|++.+++.+ |+.+++.+.. ... .+.+.++++.+||.+..++.+ +.|||||||||+||
T Consensus 68 ~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~la 132 (251)
T PRK09544 68 RIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLA 132 (251)
T ss_pred CEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHH
Confidence 599999998877764 7888765421 111 234677899999998887765 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.||++++|++ ++++.|++++.
T Consensus 133 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 9999999999999999999999999999999999876 89999999997 578899999999965 78899987754
No 256
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.1e-38 Score=318.19 Aligned_cols=187 Identities=28% Similarity=0.382 Sum_probs=160.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc--
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~-- 111 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.+||+++..
T Consensus 1 l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~ 70 (200)
T cd03217 1 LEIKDLHVSVG-------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLP 70 (200)
T ss_pred CeEEEEEEEeC-------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCC
Confidence 46889998763 346999999999999999999999999999999999994 45 48999999998632
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.+..++|++|++.+++..|+++++. . ..+.|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~q 111 (200)
T cd03217 71 PEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKK 111 (200)
T ss_pred HHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHH
Confidence 1235999999999999889888760 0 11369999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH-hccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA-LFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~-l~D~v~lL~~G~iv~~G~~~ 266 (697)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ ++|++++|++|++++.|+.+
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999999999999999999999999999999999999877999999999984 5666 79999999999999999554
Q ss_pred hHHHHHH
Q 046969 267 LAVEFFA 273 (697)
Q Consensus 267 ~~~~~f~ 273 (697)
..+.|.
T Consensus 191 -~~~~~~ 196 (200)
T cd03217 191 -LALEIE 196 (200)
T ss_pred -HHhhhc
Confidence 444443
No 257
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-38 Score=375.60 Aligned_cols=214 Identities=30% Similarity=0.449 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ ..+++|+|+|++++|||.+||+||||||||||+|+|+|++++. +|+|.+||.+++.
T Consensus 463 ~I~~~~vsf~Y~~-----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDP 534 (694)
T ss_pred eEEEEEEEEEeCC-----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 5999999999853 2467999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.+.. | ..++++. .+.++..+ |.+..||.+|+. ...||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~~i----~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LS 603 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YADDEEI----LRAAELAGVTEFVRRHPDGLDMQIGER-GRSLS 603 (694)
T ss_pred HHHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCCHHHH----HHHHHHcChHHHHHhCcccccceecCC-CCCCC
Confidence 25789999999999987 9999998752 1 2344443 33344433 445678999864 56799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999999864 799999999984 4678999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|+.++.++
T Consensus 681 G~~~eLl~ 688 (694)
T TIGR03375 681 GPKDQVLE 688 (694)
T ss_pred CCHHHHHH
Confidence 99887654
No 258
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-38 Score=334.18 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=176.5
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++. ..+.+|+|+|+.|++||+++|+|||||||||||++|+|+++ . +|+|.+||.++..
T Consensus 3 i~~~nls~~~~~-----~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 3 MTVKDLTAKYTE-----GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred EEEEEEEEEeCC-----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 789999998842 23569999999999999999999999999999999999986 3 7999999998631
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccc-------cCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVI-------GNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v-------g~~~~~~LSG 183 (697)
.++.++||+|++.+|+. ||+||+.... ..+. +.+.+.++.+||.+..+..+ ++ ....|||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~ 141 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSH 141 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCH
Confidence 24579999999999985 9999996421 1222 23556677888876554433 32 3456999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|++ ..+. .|||+++|++|++++.|
T Consensus 142 G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g 218 (275)
T cd03289 142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYD 218 (275)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecC
Confidence 99999999999999999999999999999999999999999875 489999999997 4554 59999999999999999
Q ss_pred ChhhHHH
Q 046969 264 EAKLAVE 270 (697)
Q Consensus 264 ~~~~~~~ 270 (697)
++++...
T Consensus 219 ~~~~l~~ 225 (275)
T cd03289 219 SIQKLLN 225 (275)
T ss_pred CHHHHhh
Confidence 9987654
No 259
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-38 Score=319.66 Aligned_cols=197 Identities=26% Similarity=0.381 Sum_probs=169.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--C
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--D 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~ 112 (697)
.++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.+... .
T Consensus 2 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVRG-------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEEC-------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhh
Confidence 589999999873 356999999999999999999999999999999999998874 8999999987532 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.++|++|++.+++.+||+||+.+....+ ... .+.++++++.+||.+..++.+ +.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHH
Confidence 456899999998888999999998865432 111 234788999999987777655 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
++|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++ .++.+ |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999999988899999999997 45555 99888754
No 260
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=312.72 Aligned_cols=170 Identities=34% Similarity=0.493 Sum_probs=153.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .+++++|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++...
T Consensus 1 i~~~~l~~~~~-------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRYG-------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEEC-------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchh
Confidence 46789988763 356999999999999999999999999999999999999874 8999999987532
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
.++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 135799999999999899999987642 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+++|++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999987 89999999997 57778999999999885
No 261
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-38 Score=323.85 Aligned_cols=206 Identities=23% Similarity=0.366 Sum_probs=168.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 3 IEFKNVSLRYRP-----NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLH 74 (221)
T ss_pred EEEEEEEEecCC-----CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHH
Confidence 789999998742 2357999999999999999999999999999999999998874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCc-------cccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADT-------VIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LSG 183 (697)
.++.++|++|++.+++ .||+||+.+... ... +.+.+.++.+++.+..++ .. +..+..|||
T Consensus 75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~ 142 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSV 142 (221)
T ss_pred HHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCH
Confidence 2457999999998876 599999975321 122 234445555665543321 11 124578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++. .||++++|++|++++.|
T Consensus 143 G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999999865 689999999974 554 59999999999999887
Q ss_pred C
Q 046969 264 E 264 (697)
Q Consensus 264 ~ 264 (697)
+
T Consensus 220 ~ 220 (221)
T cd03244 220 S 220 (221)
T ss_pred C
Confidence 6
No 262
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-39 Score=349.26 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=185.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++|+++++++ ++.++|+|+|+++++||-+||+|+||||||||++.|+|-++++ +|+|.+||.++...
T Consensus 336 ~l~~~~vsF~y~~-----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPG-----QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecCC-----CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCCh
Confidence 7999999999874 3567999999999999999999999999999999999999985 99999999986422
Q ss_pred ---CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------ccCccccCccCCCCC
Q 046969 113 ---SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-------CADTVIGNWHLRGIS 182 (697)
Q Consensus 113 ---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LS 182 (697)
++.+++++|...+|.+ |+|+||.++. | +.++++. .++++.+||++ ..||.+|+ ..+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDEel----~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDEEL----WAALQQVGLEKLLESAPDGLNTWLGE-GGRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHHHH----HHHHHHcCHHHHHHhChhhhhchhcc-CCCcCC
Confidence 3478999999999988 9999999863 2 3555554 44556666653 45778876 567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+-++ |+|+|++||+.. -.+.||||++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999998665 899999999975 3688999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|...+..+
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99887554
No 263
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.6e-38 Score=375.68 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=181.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++ ..+++|+|+|+++++||.+||+||||||||||+++|+|+++|+ +|+|++||.+++.
T Consensus 473 ~I~~~~vsf~y~------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 543 (708)
T TIGR01193 473 DIVINDVSYSYG------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDR 543 (708)
T ss_pred cEEEEEEEEEcC------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCH
Confidence 589999999874 2357999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++.. + ..++++. .+.++..+ +.+..||.+|+ ....||
T Consensus 544 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i----~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LS 613 (708)
T TIGR01193 544 HTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDEI----WAACEIAEIKDDIENMPLGYQTELSE-EGSSIS 613 (708)
T ss_pred HHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHHHH----HHHHHHhCCHHHHHhcccccCcEecC-CCCCCC
Confidence 25679999999999987 99999998632 1 2344443 33334333 44567899986 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|++|+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999985 4799999999984 5678999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|+.++..+
T Consensus 690 G~~~~L~~ 697 (708)
T TIGR01193 690 GSHDELLD 697 (708)
T ss_pred CCHHHHHh
Confidence 99887543
No 264
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=361.13 Aligned_cols=220 Identities=23% Similarity=0.370 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEecCc--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS-RHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~nG~~~~~-- 111 (697)
.|+++||++.++. + +++++|+|+|+++++||+++|+||||||||||||+|+|.++ +. +|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~---~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 259 ILEVRNLTAWDPV---N-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRN 331 (506)
T ss_pred eEEEecCcccccc---c-cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCC
Confidence 5899999986531 1 13569999999999999999999999999999999999987 34 8999999987531
Q ss_pred ----CCCeEEEEecCC---CCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 112 ----DSGVLAYVTQEN---VLLGTLTVRETITYSAHLRLPS--SMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ----~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
.++.++||+|++ .+++.+||.||+.+........ ....++.+++++++++.++|. +..|+.+ +.|
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 406 (506)
T PRK13549 332 PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARL 406 (506)
T ss_pred HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccC
Confidence 134599999985 4788999999998753211110 112334456788999999996 5677766 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++.
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999999997 57889999999999999999
Q ss_pred ecChhh
Q 046969 262 FGEAKL 267 (697)
Q Consensus 262 ~G~~~~ 267 (697)
.|++++
T Consensus 486 ~~~~~~ 491 (506)
T PRK13549 486 DLINHN 491 (506)
T ss_pred Eecccc
Confidence 887764
No 265
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.5e-39 Score=377.42 Aligned_cols=213 Identities=32% Similarity=0.476 Sum_probs=178.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ . +++++|+|+|++++|||.+||+||||||||||+++|+|.+++. +|+|.+||++++.
T Consensus 478 ~I~~~nVsf~Y~~---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 478 LIEFQDVSFSYPN---R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDH 550 (711)
T ss_pred eEEEEEEEEECCC---C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 5999999999853 1 2467999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++.. ..++++ +.++++..++ ++..||.+|+. ...||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LS 619 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTPDEE----IMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLS 619 (711)
T ss_pred HHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCC
Confidence 24679999999999986 99999998531 233333 4445555554 34578888863 56899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+|+++|+||+||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEM 694 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999988 22 235899999999984 4677999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|+.++..+
T Consensus 695 Gt~~eL~~ 702 (711)
T TIGR00958 695 GTHKQLME 702 (711)
T ss_pred eCHHHHHh
Confidence 99887643
No 266
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3e-38 Score=316.42 Aligned_cols=193 Identities=26% Similarity=0.372 Sum_probs=164.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|.+++. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSRG-------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEEC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHH
Confidence 46789998763 357999999999999999999999999999999999998874 8999999987531
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++.+||.||+.+....+. .+ ++.++++++.+||.+..++.+ ..|||||||||+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG-----GA--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC-----Cc--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHH
Confidence 23569999999999998999999988654431 11 245778899999988877766 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
|++++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. -.+|+++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998889999999999842 24576654
No 267
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-38 Score=314.69 Aligned_cols=176 Identities=31% Similarity=0.507 Sum_probs=152.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-------CCCeEEEEecCCC--
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-------DSGVLAYVTQENV-- 124 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-------~~~~i~yv~Q~~~-- 124 (697)
++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++... .++.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 467999999999999999999999999999999999999874 8999999987531 1346999999973
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 046969 125 LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFL 204 (697)
Q Consensus 125 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllL 204 (697)
++ ..||+||+.+..... ..+.++..++++++++.+||.+..|+.+ ..||||||||++||++|+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 469999999875432 2334555667889999999988888765 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
||||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999999888999999999973
No 268
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.3e-38 Score=311.32 Aligned_cols=170 Identities=25% Similarity=0.421 Sum_probs=152.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+ +|+++|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~-----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG-----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe-----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCH
Confidence 47888888642 899999999999999999999999999999999999874 8999999987632
Q ss_pred ---CCCeEEEEecCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 112 ---DSGVLAYVTQEN---VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ---~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.++|++|+. .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 135799999984 57888999999986421 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999999987799999999997 578899999999999974
No 269
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-38 Score=363.70 Aligned_cols=216 Identities=32% Similarity=0.487 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .++.+|+|+|++++|||.++|+||||||||||+++|+|.+++. +|+|.+||.++..
T Consensus 316 ~i~~~~v~~~y~~-----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 316 HLSVENVTIVPPG-----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDR 387 (544)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCH
Confidence 5999999998752 2467999999999999999999999999999999999999885 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-----HHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSH-----VDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.++||+|++.+|+. |++||+.+.. + ..++++..+. .++.++. +.+..||.+|+ ....||||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~-~g~~LSgG 458 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPG-TVAENIARFG----E-NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGP-GGATLSGG 458 (544)
T ss_pred HHHhhheEEecCCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHh--CccccccccCC-CcCCCCHH
Confidence 24679999999999987 9999998532 1 2334443222 2233333 33456777775 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||++++|++|++++.|+
T Consensus 459 q~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGE 536 (544)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCC
Confidence 999999999999999999999999999999999999999998767899999999984 467899999999999999999
Q ss_pred hhhHH
Q 046969 265 AKLAV 269 (697)
Q Consensus 265 ~~~~~ 269 (697)
.++..
T Consensus 537 ~~~l~ 541 (544)
T TIGR01842 537 RDEVL 541 (544)
T ss_pred HHHHh
Confidence 87653
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=359.98 Aligned_cols=213 Identities=20% Similarity=0.355 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.. +.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 265 ~l~~~~l~~~~---------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 265 VFEVRNVTSRD---------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSP 332 (510)
T ss_pred EEEEeCccccC---------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCH
Confidence 58899998631 23899999999999999999999999999999999999874 8999999987531
Q ss_pred ---CCCeEEEEecC---CCCCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-cccCccccCccC
Q 046969 112 ---DSGVLAYVTQE---NVLLGTLTVRETITYSAHLR---LPS--S-MSKEDIKSHVDGTILELGLH-DCADTVIGNWHL 178 (697)
Q Consensus 112 ---~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~ 178 (697)
.++.++||+|+ ..+++.+||.||+.+....+ ... . ...++.++.++++++.+||. +..++.++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 408 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT---- 408 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc----
Confidence 13469999998 46889999999998754321 000 0 12223345678999999997 77888764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ .++.++||++++|++|+
T Consensus 409 -~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 409 -ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGR 486 (510)
T ss_pred -cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999988899999999997 57889999999999999
Q ss_pred eeeecCh
Q 046969 259 TVYFGEA 265 (697)
Q Consensus 259 iv~~G~~ 265 (697)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988765
No 271
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.9e-38 Score=322.48 Aligned_cols=196 Identities=24% Similarity=0.414 Sum_probs=165.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCC--CCCCHHHHHHHHhh
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLL--GTLTVRETITYSAH 140 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~ 140 (697)
+++++||+++|+||||||||||+++|+|.+++. +|+|.+||++....++.++|++|++.++ ..+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468899999999999999999999999998874 8999999987643346799999998764 34799999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 046969 141 LRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFV 219 (697)
Q Consensus 141 l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i 219 (697)
.... .....++.++.++++++.+|+++..++.+ .+||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00112233456888999999988777765 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 220 IQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 220 ~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
.+.|++++++|+|||+++|++ .++.++||+++++ +|++++.|++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999987899999999997 4788999999999 8999999987754
No 272
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=345.86 Aligned_cols=214 Identities=25% Similarity=0.325 Sum_probs=182.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++.+.. + ..+.+|+|+|+.+++|++++|+|||||||||||++|+|++++. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~---~-~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD---G-EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC---C-ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-----
Confidence 4888888877632 1 2357999999999999999999999999999999999999874 89999999752
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
++.+...+.+.+||+||+.+..... ..+.++..+.++++++.++|.+..++.+ +.||||||||++||++
T Consensus 89 ---~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArA 157 (549)
T PRK13545 89 ---LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAIS 157 (549)
T ss_pred ---eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHH
Confidence 2333455677899999998865432 2334555667888999999988888765 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHH
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFF 272 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f 272 (697)
|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++..-|
T Consensus 158 L~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 158 VHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999999999999999999999988899999999997 5788999999999999999999988765433
No 273
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.7e-38 Score=324.45 Aligned_cols=209 Identities=32% Similarity=0.456 Sum_probs=168.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. + ..+.+|+|+|+.+++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~~~---~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 11 IVKFQNVTFAYPT---R-PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEH 83 (226)
T ss_pred eEEEEEEEEEeCC---C-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCH
Confidence 5899999998852 1 1246999999999999999999999999999999999999874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCcccCccccCccCCCCCHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL--GLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.++|++|++.+++ .||+||+.+...........+......++++++.+ |+++..++.+ +.|||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LSgG~~q 157 (226)
T cd03248 84 KYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLSGGQKQ 157 (226)
T ss_pred HHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCHHHHH
Confidence 1356999999998886 59999998754311000000011112356778887 7776666654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++. .||++++|++|++
T Consensus 158 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999875 699999999984 564 5999999999874
No 274
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.7e-38 Score=308.49 Aligned_cols=168 Identities=33% Similarity=0.519 Sum_probs=150.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. ..+.+++++|+++++||+++|+|||||||||||++|+|.+++. +|+|.+||++...
T Consensus 1 i~~~~l~~~~~~-----~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYPG-----AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcCC-----CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHH
Confidence 467899987642 1356999999999999999999999999999999999999874 8999999987632
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++|++|++.+++. ||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 23579999999988875 999987 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999878999999999974 55 68999999999974
No 275
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.2e-38 Score=364.39 Aligned_cols=214 Identities=27% Similarity=0.393 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ .++.+|+|+|+.+++||.++|+|+||||||||+++|+|++++. +|+|.+||.+++.
T Consensus 330 ~i~~~~v~f~y~~-----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTL 401 (571)
T ss_pred eEEEEEEEEEcCC-----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCH
Confidence 5999999998753 2357999999999999999999999999999999999999885 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++. ++..++++ ++++++..|+ .+..||.+|+. .+.||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~~----i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LS 471 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLS 471 (571)
T ss_pred HHHHhhceEEccCcccccc-cHHHHHhcCC----CCCCCHHH----HHHHHHHcChHHHHHhCcCcccceecCC-CCcCC
Confidence 24679999999999987 9999998753 11233433 4445555554 44578889864 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+++++|++++||||||+||+.++..+++.|++++ +++|+|++||++ ...+.||+|++|++|+++..
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~ 548 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVER 548 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEee
Confidence 999999999999999999999999999999999999999999975 479999999997 46788999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 549 g~~~~l~ 555 (571)
T TIGR02203 549 GTHNELL 555 (571)
T ss_pred CCHHHHH
Confidence 9988653
No 276
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-38 Score=344.25 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=195.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++.+|++++++ ..++|+|||+.+.+||++|++|.||||||||+|+|+|.++|+ +|+|.+||++...
T Consensus 7 ~ll~~~~i~K~Fg-------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSFG-------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEcC-------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCC
Confidence 4688999999874 568999999999999999999999999999999999999985 9999999998642
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
....|+.|.|+..|+|+|||.|||.+....+.+ .-...++.++++.++++.+|+....+++|+ .||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHH
Confidence 135699999999999999999999987665432 235677888899999999999655888886 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|-|+||+||..+++||+||||||.|+...+..+.+.+++++++|.+||+++|.. .|++++|||+.+|.+|+.+..++.
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999999999999999999999999997 699999999999999999998883
No 277
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-39 Score=323.69 Aligned_cols=193 Identities=27% Similarity=0.422 Sum_probs=172.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---------cCCCeEEEEecCCCCCCCC
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---------VDSGVLAYVTQENVLLGTL 129 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---------~~~~~i~yv~Q~~~l~~~l 129 (697)
=++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||+... ..++.+|||+||..|||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3577777665799999999999999999999999985 999999998641 2357899999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046969 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS 209 (697)
Q Consensus 130 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts 209 (697)
||+.||.|+...- .....+++++.+|++|..+++. ..|||||||||+|+|||+++|++|+||||.+
T Consensus 92 tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 92 TVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred EEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 9999999985321 2345788899999999999965 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 210 GLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
.||-....+++-.|.+|+++ +..|+.++|.+ +|+.+++|+|++|++|++..+|+.+++.
T Consensus 158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 99999999999999999986 89999999997 7999999999999999999999998654
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.3e-38 Score=356.96 Aligned_cols=207 Identities=23% Similarity=0.219 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++ .+.+|+|+|+++++||+++|+||||||||||||+|+|.++++ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRLS-------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEcC-------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCH
Confidence 489999999873 345999999999999999999999999999999999999874 8999999876421
Q ss_pred --CCCeEEEEecCCCC--C------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCC
Q 046969 112 --DSGVLAYVTQENVL--L------GTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l--~------~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 181 (697)
.++.++|++|++.+ + ..+||+|++.+. .+.+++++++++.+||.+..++.++ .|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK-----YL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc-----cC
Confidence 12458999998643 1 147888887532 1224568889999999988888764 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 216 ~~~~~~~ 222 (490)
T PRK10938 216 TGEREEI 222 (490)
T ss_pred eCCHHHH
Confidence 9987754
No 279
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.4e-38 Score=364.55 Aligned_cols=212 Identities=29% Similarity=0.453 Sum_probs=179.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++..
T Consensus 334 ~I~~~~vsf~y~~------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 334 AVEFDDVSFSYDN------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTR 404 (588)
T ss_pred eEEEEEEEEEeCC------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCH
Confidence 5999999998842 346999999999999999999999999999999999999985 9999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++. | ..++++.. +.++..+ +++..||.+|+ ..+.||
T Consensus 405 ~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~i~----~al~~~~l~~~i~~lp~gldt~i~~-~g~~LS 473 (588)
T PRK13657 405 ASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDEEMR----AAAERAQAHDFIERKPDGYDTVVGE-RGRQLS 473 (588)
T ss_pred HHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHHHHH----HHHHHhCHHHHHHhCcccccchhcC-CCCCCC
Confidence 24679999999999986 9999998752 1 23444433 3334433 44557888876 356799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|++|+++..
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVES 550 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999875 4799999999983 5688999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 551 g~~~~l~ 557 (588)
T PRK13657 551 GSFDELV 557 (588)
T ss_pred CCHHHHH
Confidence 9977653
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.3e-38 Score=309.48 Aligned_cols=174 Identities=29% Similarity=0.485 Sum_probs=152.9
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.+||+++..
T Consensus 1 i~~~~~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYPE-----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeCC-----CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHH
Confidence 468899988742 1246999999999999999999999999999999999998874 8999999987531
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 2356999999998886 6999987 24699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|++|+.+|++|+|||||+|||+.++..+++.|++++ ++.|||+++|++. ++ ..+|++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 5899999999974 55 579999999999998764
No 281
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7e-38 Score=356.11 Aligned_cols=221 Identities=23% Similarity=0.349 Sum_probs=183.5
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..|+++|+++.+.. + +.+.+|+|+|+++++||+++|+||||||||||||+|+|.++|. .+|+|.++|+++..
T Consensus 256 ~~l~~~~l~~~~~~---~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 256 VILEARNLTCWDVI---N-PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRN 329 (500)
T ss_pred ceEEEeCCcccccc---c-ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCC
Confidence 35899999876421 0 1356999999999999999999999999999999999998741 38999999987631
Q ss_pred ----CCCeEEEEecCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCC
Q 046969 112 ----DSGVLAYVTQEN---VLLGTLTVRETITYSAHLRLP--SSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ----~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 181 (697)
.++.++||+|+. .+++.+||+||+.+...-... ......+.++.++++++.++|.+ ..|+.+ +.|
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 404 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRL 404 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccC
Confidence 135699999995 588999999999875421110 01223344567889999999964 567766 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++ .++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999999997 57889999999999999998
Q ss_pred ecChh
Q 046969 262 FGEAK 266 (697)
Q Consensus 262 ~G~~~ 266 (697)
.++.+
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 77543
No 282
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=305.38 Aligned_cols=232 Identities=27% Similarity=0.404 Sum_probs=201.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..|+++||++++.. ++.||++||+++++||+.+||||||||||||.++|+|.-.- ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~~------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 2 MMLEIKDLHVEVEG------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEEeeeEEEecC------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCC
Confidence 46899999999842 26899999999999999999999999999999999998532 3569999999998631
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGer 186 (697)
.+..+..-+|.|.-+|..|+.+.|..+.+.+........+..+.+++.++.+++.+ .+++.+. .|+|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 13558888999999999999999998876643221113456777889999999987 7888876 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhc--cceeeecCCeeeeecC
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALF--DDLFLLSGGETVYFGE 264 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~--D~v~lL~~G~iv~~G~ 264 (697)
||..|+..++.+|++.+||||-||||..+-+.|.+.+.++++.|.+++++||.. ++.++. |++.+|.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999994 688877 9999999999999999
Q ss_pred hhhHHHHHHhcCCCC
Q 046969 265 AKLAVEFFAEAGFPC 279 (697)
Q Consensus 265 ~~~~~~~f~~~g~~~ 279 (697)
+ +..+++++.||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 7888888888865
No 283
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-37 Score=325.20 Aligned_cols=212 Identities=20% Similarity=0.314 Sum_probs=169.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ..+.+|+|+|+.+++||+++|+|+||||||||+++|+|++++. +|+|.++|+++..
T Consensus 19 ~i~~~~l~~~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 19 EIKIHDLCVRYEN-----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPL 90 (257)
T ss_pred eEEEEEEEEEeCC-----CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCH
Confidence 4899999998742 1356999999999999999999999999999999999998874 8999999997632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKS-----HVDGTILEL--GLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++.+++. |++||+.... ....+...+ .+++.++.+ |++...+. ..+.||
T Consensus 91 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-----~~~~LS 158 (257)
T cd03288 91 HTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE-----GGENFS 158 (257)
T ss_pred HHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEecc-----CCCcCC
Confidence 24579999999988875 9999985321 111111111 122333333 33332222 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++. .+|++++|++|++++.
T Consensus 159 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~ 235 (257)
T cd03288 159 VGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVEC 235 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999975 4899999999985 555 4999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|++++..
T Consensus 236 g~~~~~~ 242 (257)
T cd03288 236 DTPENLL 242 (257)
T ss_pred CCHHHHH
Confidence 9887543
No 284
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-37 Score=311.79 Aligned_cols=192 Identities=24% Similarity=0.305 Sum_probs=164.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
|.++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDYH-------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEeC-------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHH
Confidence 68899998873 356999999999999999999999999999999999999874 8999999987531
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++|++|+..+++.+||+||+.+..... .. ...++++++.+++.+..++.+ ..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHH
Confidence 2357999999998888999999999864221 11 235788999999987777765 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcccee
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLF 252 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~ 252 (697)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ..+.+|...
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999999878999999999974 345577543
No 285
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-37 Score=312.53 Aligned_cols=197 Identities=22% Similarity=0.376 Sum_probs=163.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ..+.+|+|+|+.+++||+++|+|||||||||||++|+|+.++. +|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~-----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYAP-----DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeCC-----CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCH
Confidence 4889999998742 1246999999999999999999999999999999999998874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++|++.+++. ||+||+.+.. ....++ +.+.++ + ++ .++.||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~~~----~~~~l~---~----~~-----~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSDEE----IYGALR---V----SE-----GGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCHHH----HHHHhh---c----cC-----CCCcCCHHHHHHH
Confidence 23579999999988874 9999997531 112222 233332 1 22 3468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
+||++|+.+|++++|||||+|||+.+...+.+.|++++ +|+|+|+++|++. ++.. +|++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 4899999999974 5544 999999999999988763
No 286
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=308.38 Aligned_cols=218 Identities=26% Similarity=0.409 Sum_probs=192.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD--- 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--- 112 (697)
++.+|+++.+ .++.+|+++|..+++|.+++|+|||||||||||.+++.+++.+ +|+|.++|.++...
T Consensus 2 I~i~nv~K~y-------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 2 ITIENVSKSY-------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71 (252)
T ss_pred eeehhhhHhh-------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChH
Confidence 5677888766 4688999999999999999999999999999999999998875 99999999987422
Q ss_pred --CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 113 --SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 113 --~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.+.++.+-|+..+-..+||+|-+.|+..-+- .+...++.+..+++.++.++|++..|+.+ .+||||||||.-
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAf 145 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAF 145 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhh
Confidence 2567888999999999999999999754322 22334555778999999999999999976 479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||+.++.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||-. ..-.++|+|+-|++|+++..|+++++.
T Consensus 146 IAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred hheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhc
Confidence 999999999999999999999999999999999999987 999999999974 677899999999999999999999865
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
+
T Consensus 225 ~ 225 (252)
T COG4604 225 Q 225 (252)
T ss_pred C
Confidence 3
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=353.94 Aligned_cols=213 Identities=19% Similarity=0.306 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++|++. +.+++|+|+.+++||+++|+|||||||||||++|+|.+++. +|+|.++|+++...
T Consensus 257 ~l~~~~~~~-----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKG-----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEecccc-----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCH
Confidence 577777752 24899999999999999999999999999999999999874 89999999875321
Q ss_pred ----CCeEEEEecCC---CCCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 113 ----SGVLAYVTQEN---VLLGTLTVRETITYSAHLRL-PSS--MSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 113 ----~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
++.++|++|++ .+++.+||.||+.+...... +.. ....+.++.++++++.+|+. +..++.++ .|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cC
Confidence 35699999986 48899999999987542211 001 12233345688999999994 67788765 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|||||||+|||+.+...+++.|++++++|.|||+++||+ .++.++||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999999997 57889999999999999999
Q ss_pred ecChhh
Q 046969 262 FGEAKL 267 (697)
Q Consensus 262 ~G~~~~ 267 (697)
.|.+++
T Consensus 477 ~~~~~~ 482 (501)
T PRK11288 477 ELAREQ 482 (501)
T ss_pred EEcccc
Confidence 998764
No 288
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5.6e-38 Score=338.21 Aligned_cols=225 Identities=31% Similarity=0.428 Sum_probs=192.4
Q ss_pred cCccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 046969 30 AARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 30 ~~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 109 (697)
+.+.-.|..+++++.-+. .++++|+++||.+++||.+||+||||||||||.|+|.|..++. +|.|.+||.++
T Consensus 329 P~P~g~L~Ve~l~~~PPg-----~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l 400 (580)
T COG4618 329 PAPQGALSVERLTAAPPG-----QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADL 400 (580)
T ss_pred CCCCceeeEeeeeecCCC-----CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhh
Confidence 344557999999985332 4678999999999999999999999999999999999999884 99999999986
Q ss_pred CcC-----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHH-----HHHHHHHHHHcCCCcccCccccCccCC
Q 046969 110 RVD-----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDI-----KSHVDGTILELGLHDCADTVIGNWHLR 179 (697)
Q Consensus 110 ~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~d~~vg~~~~~ 179 (697)
+.. .+.|||+||+-.||+. ||.|||.=. .+..+.+.+ .+.|.+++ +.|.+-.||.||+ ...
T Consensus 401 ~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf-----~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~ 471 (580)
T COG4618 401 RQWDREQLGRHIGYLPQDVELFDG-TIAENIARF-----GEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGA 471 (580)
T ss_pred hcCCHHHhccccCcCcccceecCC-cHHHHHHhc-----cccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCC
Confidence 422 3689999999999998 999999632 222233322 22344443 5688999999997 456
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
+||||||||+++||||-.||.+++||||-|+||......+.+.|..++++|.|+|+++|.|+ +...+|+|++|++|++
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRI 549 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChH
Confidence 89999999999999999999999999999999999999999999999999999999999984 7899999999999999
Q ss_pred eeecChhhHHHHHH
Q 046969 260 VYFGEAKLAVEFFA 273 (697)
Q Consensus 260 v~~G~~~~~~~~f~ 273 (697)
..+|+.++++....
T Consensus 550 ~~FG~r~eVLa~~~ 563 (580)
T COG4618 550 AAFGPREEVLAKVL 563 (580)
T ss_pred HhcCCHHHHHHHhc
Confidence 99999999887654
No 289
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-37 Score=367.57 Aligned_cols=214 Identities=29% Similarity=0.455 Sum_probs=180.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ..+.+|+|+|++++|||.+||+|+||||||||+|+|+|.+++. +|+|.+||.+++.
T Consensus 455 ~i~~~~vsf~y~~-----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 455 AITFENIRFRYAP-----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADP 526 (694)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCH
Confidence 5999999998852 2456999999999999999999999999999999999999885 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.+.. | ..++++.. +.++..+ |.+..||.+|+. ...||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~~i~----~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LS 595 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFEHVI----HAAKLAGAHDFISELPQGYNTEVGEK-GANLS 595 (694)
T ss_pred HHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCHHHHH----HHHHHcChHHHHHhCcCccCcEecCC-CCCCC
Confidence 24679999999999986 9999998742 1 23444433 3333333 344578888863 57899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++ ..+.||++++|++|++++.
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAES 672 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999985 5899999999984 3467999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|+.++..+
T Consensus 673 g~~~~l~~ 680 (694)
T TIGR01846 673 GRHEELLA 680 (694)
T ss_pred CCHHHHHH
Confidence 99876543
No 290
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-37 Score=367.19 Aligned_cols=219 Identities=32% Similarity=0.433 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.||+ +++.+||+|+|+++++|+.+||+|||||||||.+.+|-..++|. +|.|.+||++++.
T Consensus 987 ~I~~~~V~F~YPs----RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT----RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred EEEEeeeEeeCCC----CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCH
Confidence 4999999999984 36789999999999999999999999999999999999999984 9999999998752
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HH--HcCCCcccCccccCccCCCCCHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-IL--ELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~--~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.|+++|.|.|+|.||.. |++|||.|+. . ..+.+|+.+..+.. +. ..+|.+..||.||+ ...+||||||
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQK 1132 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNG-TIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQK 1132 (1228)
T ss_pred HHHHHhcceeccCchhhcc-cHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHH
Confidence 26789999999999987 9999999982 1 24555544332211 11 24789999999997 4458999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||++||||+++||+||||||.||+||+++.+.|.+.|.+. ..|+|.|++.|+++ ..+.+|.|.++++|++++.|+-+
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHH
Confidence 9999999999999999999999999999999999999995 55899999999985 46789999999999999999988
Q ss_pred hHHH
Q 046969 267 LAVE 270 (697)
Q Consensus 267 ~~~~ 270 (697)
+.+.
T Consensus 1210 ~L~~ 1213 (1228)
T KOG0055|consen 1210 ELLA 1213 (1228)
T ss_pred HHHh
Confidence 7665
No 291
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.7e-37 Score=357.34 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=177.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .+++|+|+|+++++||.++|+||||||||||+++|+|.+++. +|+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 334 AVEFRHITFEFAN------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTR 404 (585)
T ss_pred eEEEEEEEEECCC------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCH
Confidence 5999999998742 346899999999999999999999999999999999999885 9999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHH--cCCCcccCccccCccCCCCCHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-ILE--LGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++||+|++.+++. |++|||.++. + ..++++..+..+.. +++ ..+.+..||.+|+ ....||||||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~ 477 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNR-SIRENIRLGR----E-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGER 477 (585)
T ss_pred HHHHhheEEEccCCccCcc-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHH
Confidence 24679999999999875 9999998752 1 23444433322211 111 1234456777775 4568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|+++ .+ +.||++++|++|++++.|+.+
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999874 4899999999984 44 679999999999999999987
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+..
T Consensus 555 ~l~ 557 (585)
T TIGR01192 555 ELI 557 (585)
T ss_pred HHH
Confidence 654
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.1e-37 Score=357.32 Aligned_cols=213 Identities=27% Similarity=0.396 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .++.+|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||++...
T Consensus 313 ~I~~~~v~~~y~~-----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQL 384 (569)
T ss_pred cEEEEEEEEECCC-----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCH
Confidence 5899999998752 2457999999999999999999999999999999999999885 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++. + ..++++. ++.++..+ +.+..||.+|+ ....||
T Consensus 385 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LS 453 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQEI----EHVARLASVHDDILRLPQGYDTEVGE-RGVMLS 453 (569)
T ss_pred HHHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecC-CCCcCC
Confidence 24679999999999986 9999998752 1 2334433 33334333 44567888876 356799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+|+.+|++++|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 454 gGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQR 530 (569)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999975 5899999999984 4577999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|+.++..
T Consensus 531 g~~~~l~ 537 (569)
T PRK10789 531 GNHDQLA 537 (569)
T ss_pred cCHHHHH
Confidence 9987654
No 293
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=352.37 Aligned_cols=217 Identities=27% Similarity=0.380 Sum_probs=188.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. +...+.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~---~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPS---GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCC---CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCH
Confidence 5899999998852 112356999999999999999999999999999999999999874 8999999998632
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.++|++|+..+++.+|+.||+.+..... ....++.++++.++++.+||.+..|+.+ ..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHH
Confidence 1357999999999999999999999865432 2334556677899999999998888766 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999878999999999974 4467999999999999999987
Q ss_pred hh
Q 046969 266 KL 267 (697)
Q Consensus 266 ~~ 267 (697)
++
T Consensus 228 ~~ 229 (648)
T PRK10535 228 QE 229 (648)
T ss_pred cc
Confidence 64
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.9e-37 Score=332.21 Aligned_cols=185 Identities=28% Similarity=0.468 Sum_probs=164.5
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 046969 73 IMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSK 149 (697)
Q Consensus 73 I~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~ 149 (697)
|+|||||||||||++|+|++++. +|+|.++|+++.. .++.++|++|++.+++.+||+||+.|....+ ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999874 8999999998632 2457999999999999999999999986543 2344
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 046969 150 EDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229 (697)
Q Consensus 150 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~ 229 (697)
++.+++++++++.+||.+..++.+ ..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 556677899999999998888765 579999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 230 -GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 230 -g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|+|||++||++ .++.++||++++|++|+++..|++++..
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999997 5789999999999999999999988653
No 295
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-37 Score=311.28 Aligned_cols=196 Identities=28% Similarity=0.410 Sum_probs=154.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
++++||++.+.+ .+...+.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++| .
T Consensus 1 l~~~~l~~~~~~--~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~ 67 (204)
T cd03250 1 ISVEDASFTWDS--GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------S 67 (204)
T ss_pred CEEeEEEEecCC--CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------E
Confidence 468999988742 0000146999999999999999999999999999999999998874 89999998 5
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------cCccccCccCCCCCHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-------ADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqR 188 (697)
++|++|++.+++ .|++||+.+.... ..++ +.+.++.+++.+. .++... .....||||||||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qr 135 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF------DEER----YEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQR 135 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc------CHHH----HHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHH
Confidence 999999998885 6999999875321 1111 2222233333211 122222 2356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQ-TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~-~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
++||++|+.+|++++|||||+|||+.++..+.+ .+++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus 136 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999998 56777667899999999974 5655 99999999885
No 296
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=351.27 Aligned_cols=213 Identities=23% Similarity=0.385 Sum_probs=180.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++ .+|+|+|+++++||+++|+|||||||||||++|+|..+++ +|+|.++|+++..
T Consensus 257 ~l~~~~l~~------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 467777652 2699999999999999999999999999999999999874 8999999987531
Q ss_pred ---CCCeEEEEecCC---CCCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCC
Q 046969 112 ---DSGVLAYVTQEN---VLLGTLTVRETITYSAHLRLP---SSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGI 181 (697)
Q Consensus 112 ---~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 181 (697)
.++.+|||+|++ .+++.+||.||+.+....... .....++.++.++++++.+||. +..++.++ .|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hC
Confidence 134699999995 578899999999875321100 0122334456788999999995 66777664 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999999997 57889999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9887653
No 297
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=290.39 Aligned_cols=214 Identities=23% Similarity=0.344 Sum_probs=188.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.+..+++++.+ +..++|.|+++..+.||.+.++||||||||||++.|.=+..|. +|+..+.|...+.
T Consensus 2 sirv~~in~~y-------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY-------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc-------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccC
Confidence 46677777665 3578999999999999999999999999999999998776664 8999998875321
Q ss_pred --------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 112 --------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 --------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
.++.+|+|+|+-.++|.|||.|||.-+. ++. ..+++++.+++..++++.+.|.+.+|+.. -.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eeccc
Confidence 1357999999999999999999997653 222 25778888999999999999999999864 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||+|||+|||||+.+|.+|++||||+.|||+-..+++++|++++..|.|-++++|.. ....+.+.+|+.|.+|++++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeec
Confidence 999999999999999999999999999999999999999999999999999999996 5667899999999999999999
Q ss_pred Chh
Q 046969 264 EAK 266 (697)
Q Consensus 264 ~~~ 266 (697)
+.+
T Consensus 224 ~a~ 226 (242)
T COG4161 224 DAS 226 (242)
T ss_pred chh
Confidence 875
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.4e-37 Score=357.54 Aligned_cols=213 Identities=31% Similarity=0.472 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. . ..+.+|+|+|++++|||.++|+||||||||||+|+|+|.+++. +|+|.+||.+++.
T Consensus 337 ~i~~~~v~f~y~~---~-~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~ 409 (576)
T TIGR02204 337 EIEFEQVNFAYPA---R-PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDP 409 (576)
T ss_pred eEEEEEEEEECCC---C-CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 5899999998853 1 2367999999999999999999999999999999999999884 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++.+|+. |++|||.++. | ..++++ +.+.++..|+ ++..|+.+|+ ....||
T Consensus 410 ~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~~~----~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LS 478 (576)
T TIGR02204 410 AELRARMALVPQDPVLFAA-SVMENIRYGR----P-DATDEE----VEAAARAAHAHEFISALPEGYDTYLGE-RGVTLS 478 (576)
T ss_pred HHHHHhceEEccCCccccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCC
Confidence 23579999999999987 9999998742 1 223333 4445555554 3346777876 356799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||+++.+|++|+||||||+||+.++..+++.|+++. +++|+|+++|++ +....+|+++.|++|+++..
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999985 489999999997 35678999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|+.++.
T Consensus 556 g~~~~l 561 (576)
T TIGR02204 556 GTHAEL 561 (576)
T ss_pred ecHHHH
Confidence 998764
No 299
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.8e-37 Score=306.23 Aligned_cols=174 Identities=37% Similarity=0.566 Sum_probs=150.1
Q ss_pred EEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 046969 37 VWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD---- 112 (697)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~---- 112 (697)
+++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.+||+++...
T Consensus 1 ~~~~l~~~~~-------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYG-------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEEC-------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHH
Confidence 3678888763 256999999999999999999999999999999999999874 89999999875311
Q ss_pred -CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 113 -SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 113 -~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
++.++|++| +++.+||.+..++.+ +.||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 134666666 556677776666544 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 89999999997 4778999999999999998654
No 300
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.5e-37 Score=350.12 Aligned_cols=212 Identities=22% Similarity=0.307 Sum_probs=177.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|++. .+|+|+|+.+++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..
T Consensus 268 ~l~~~~l~~------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCH
Confidence 477777762 1599999999999999999999999999999999998874 8999999987532
Q ss_pred ---CCCeEEEEecCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHH
Q 046969 112 ---DSGVLAYVTQEN---VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ---~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 184 (697)
.++.++|++|++ .+++.+||.|++......+.+......+.++.++++++.+||. +..++.+ +.||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcH
Confidence 124699999984 4888899999996431111111111223345688999999997 6778766 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|.
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999999998899999999997 57889999999999999999887
Q ss_pred hhh
Q 046969 265 AKL 267 (697)
Q Consensus 265 ~~~ 267 (697)
+++
T Consensus 487 ~~~ 489 (510)
T PRK15439 487 GAA 489 (510)
T ss_pred ccc
Confidence 653
No 301
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-37 Score=387.58 Aligned_cols=222 Identities=26% Similarity=0.380 Sum_probs=183.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-------------------
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH------------------- 95 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~------------------- 95 (697)
.++++||++.+++ + ++++||+|+|++++||+.+||+||||||||||+++|.|++++.
T Consensus 1165 ~I~f~nVsF~Y~~---~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS---R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCC---C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 5999999999863 1 2457999999999999999999999999999999999999872
Q ss_pred --------------------------------CCceeEEEECCEecCc-----CCCeEEEEecCCCCCCCCCHHHHHHHH
Q 046969 96 --------------------------------VIMTGNVLFNGKKTRV-----DSGVLAYVTQENVLLGTLTVRETITYS 138 (697)
Q Consensus 96 --------------------------------~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 138 (697)
...+|+|++||.+++. .++.+|||+|++.||+. |++|||.|+
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g 1319 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFG 1319 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcC
Confidence 0148999999998742 25789999999999975 999999986
Q ss_pred hhccCCCCCCHHHHHHHHHHH-HHH--cCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 046969 139 AHLRLPSSMSKEDIKSHVDGT-ILE--LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSAS 215 (697)
Q Consensus 139 ~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~ 215 (697)
. + ..+++++++.++.. +++ ..|.+..||.||+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1320 ~----~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1320 K----E-DATREDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred C----C-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 3 1 34555543322211 111 2466778999996 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEeCCCcHHHHHhccceeeecC----Ceee-eecChhhHH
Q 046969 216 AFFVIQTLRNIA-RDGRTVISSIHQPSSEVFALFDDLFLLSG----GETV-YFGEAKLAV 269 (697)
Q Consensus 216 a~~i~~~L~~la-~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~----G~iv-~~G~~~~~~ 269 (697)
+..|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++ +.|+.++.+
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 999999999987 36899999999974 4678999999998 8955 899988754
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=318.96 Aligned_cols=230 Identities=26% Similarity=0.373 Sum_probs=200.8
Q ss_pred cccCccceEEEEEEEEEecccc----ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 046969 28 RAAARGTFLVWENLFAVLPNFG----NNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVL 103 (697)
Q Consensus 28 ~~~~~~~~l~~~~l~~~~~~~~----~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~ 103 (697)
.....+..|+.+|+.+.++-.+ .......++++||+++++||.++|+|.||||||||=.+|.+++++ +|+|.
T Consensus 269 ~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~ 344 (534)
T COG4172 269 LPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIR 344 (534)
T ss_pred CCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEE
Confidence 3345667899999999887421 111235689999999999999999999999999999999999986 69999
Q ss_pred ECCEecC--------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCcc
Q 046969 104 FNGKKTR--------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTV 172 (697)
Q Consensus 104 ~nG~~~~--------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~ 172 (697)
++|+++. ..++.+-.|+||+ .|-|.+||.|-+.-+....-| ..+++|+.++|.+.++++||+. ..++
T Consensus 345 F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~R- 422 (534)
T COG4172 345 FDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNR- 422 (534)
T ss_pred ECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhc-
Confidence 9999864 1246789999998 589999999999988877644 5788999999999999999975 3444
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccce
Q 046969 173 IGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDL 251 (697)
Q Consensus 173 vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v 251 (697)
++.++|||||||++|||||+.+|++++||||||.||-.-+.+|+++|++|.++ |.+-++++||. .-+..+||+|
T Consensus 423 ----YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~v 497 (534)
T COG4172 423 ----YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRV 497 (534)
T ss_pred ----CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceE
Confidence 56799999999999999999999999999999999999999999999999875 99999999997 5788999999
Q ss_pred eeecCCeeeeecChhhH
Q 046969 252 FLLSGGETVYFGEAKLA 268 (697)
Q Consensus 252 ~lL~~G~iv~~G~~~~~ 268 (697)
++|.+|+||++|+++++
T Consensus 498 iVm~~GkiVE~G~~~~i 514 (534)
T COG4172 498 IVMRDGKIVEQGPTEAV 514 (534)
T ss_pred EEEeCCEEeeeCCHHHH
Confidence 99999999999999865
No 303
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=328.82 Aligned_cols=214 Identities=27% Similarity=0.365 Sum_probs=193.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++.+++++.++ ...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.+||++....
T Consensus 4 ~l~~~~itK~f~-------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRFP-------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEcC-------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCH
Confidence 588999999874 467899999999999999999999999999999999999985 99999999986422
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
+..||+|.|+..|++++||.||+.++..-........++.+++++++.+..||+-..|.+|+ .||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHH
Confidence 35699999999999999999999998754322245677888899999999999988888886 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|.|-++|..+|++|+|||||+-|-|..+.+++++|++++++|+|||++||.. .|+.++|||+-+|.+|+++-.-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999999996 69999999999999999987655
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=298.32 Aligned_cols=166 Identities=36% Similarity=0.593 Sum_probs=146.6
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-----~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG-----RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHH
Confidence 467899987642 1236999999999999999999999999999999999999874 8999999987531
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++.++|++|++.+++ .|+.||+ |||||||||+
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 1356999999998876 5998886 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 79999999997 45665 99999999885
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.9e-36 Score=294.47 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=141.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++|+++.++ .+++|+++|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRFG-------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEEC-------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHH
Confidence 46889998874 346999999999999999999999999999999999999874 8999999987531
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 1345778877 899999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
+||++|+.+|++++|||||+|||..++..+.+.|++++++|.|||+++|++ .++.+.+|++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999987899999999997 46888999999999999875
No 306
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-36 Score=307.51 Aligned_cols=199 Identities=26% Similarity=0.361 Sum_probs=156.9
Q ss_pred EEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 046969 37 VWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV----- 111 (697)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----- 111 (697)
.+.|+.+.++ ..+++++|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|++...
T Consensus 2 ~~~~~~~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccc
Confidence 3456666653 2357999999999999999999999999999999999999874 8999999986421
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccC-------ccccCccCCC
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCAD-------TVIGNWHLRG 180 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~ 180 (697)
.++.++|++|++.++ ..|++||+.+... ...+ ...++++.++|.+..+ +..+ ..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCc
Confidence 135699999999887 5699999987531 1121 1234455555543221 2222 23568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQ--TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~--~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
|||||||||+||++|+.+|++|+|||||+|||+.+...+++ .++.+.++|.|+|+++|++. .+ ..+|++++|++|.
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 67776667899999999984 45 5799999999874
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.2e-36 Score=294.80 Aligned_cols=163 Identities=37% Similarity=0.528 Sum_probs=144.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|. +.
T Consensus 1 i~~~~~~~~~~~------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~ 65 (166)
T cd03223 1 IELENLSLATPD------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------ED 65 (166)
T ss_pred CEEEEEEEEcCC------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ce
Confidence 468899987632 356999999999999999999999999999999999998874 899999874 56
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
++|++|++.++ ..||+||+.+. ..+.||||||||++||++|
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral 106 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHH
Confidence 99999998765 57999998752 1247999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 196 LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ..+.+|++++|++|
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999999999999999999999986 589999999974 45799999999865
No 308
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.9e-36 Score=305.71 Aligned_cols=195 Identities=19% Similarity=0.202 Sum_probs=162.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVL-FNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
.+|+|||+++++||+++|+||||||||||+++|+|.+++. +|+|. ++|... .+.|+..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999998874 89997 777532 13356678999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA 214 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~ 214 (697)
+.+.+..+ ....++.. +.+.+.++|++..|+.++ .||||||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~~---~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEFS---HFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHHH---HHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876643 12233322 233455788877777664 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHHh
Q 046969 215 SAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274 (697)
Q Consensus 215 ~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~~ 274 (697)
++..+.+.|.+..+ ++|+|+++|++ .++.++||++++|++|++++.|+.+++.+++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866443 47899999998 478889999999999999999999988777653
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-36 Score=301.15 Aligned_cols=190 Identities=25% Similarity=0.282 Sum_probs=159.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CCC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-DSG 114 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-~~~ 114 (697)
++++|+++.+. .+.+++ +|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.++.. ..+
T Consensus 2 l~~~~l~~~~~-------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNIE-------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEEC-------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhh
Confidence 68899998873 244555 99999999999999999999999999999998874 8999999987642 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
.++|++|+..+++.+||+||+.+..... . ..+.++++++.+++.+..++.+ +.||||||||++||++
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHH
Confidence 5899999988888899999998865432 1 1235677888999988777765 4799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccce
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDL 251 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v 251 (697)
|+.+|++++|||||+|||+.++..+.+.|++.+++|+|||+++|++. ++ +.+|-+
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999999999999999999887777999999999974 33 335544
No 310
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8e-36 Score=314.43 Aligned_cols=201 Identities=23% Similarity=0.381 Sum_probs=162.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++|+++. .+.+|+|+|+.+++||+++|+|||||||||||++|+|++++. +|+|.++|
T Consensus 38 ~~l~i~nls~~---------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g------- 98 (282)
T cd03291 38 NNLFFSNLCLV---------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG------- 98 (282)
T ss_pred CeEEEEEEEEe---------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------
Confidence 45899999874 245999999999999999999999999999999999999874 89999988
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------cCccccCccCCCCCHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-------ADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGer 186 (697)
.++|++|++.+++. ||+||+.+.... ... .+.+.++.+++.+. .++.++. .+..||||||
T Consensus 99 -~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~ 165 (282)
T cd03291 99 -RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQR 165 (282)
T ss_pred -EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHH
Confidence 38999999988875 999999874321 111 12223333343322 2333322 3468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL-RNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L-~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||++||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. ++ ..||++++|++|++++.|++
T Consensus 166 qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 166 ARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999865 5554 4799999999974 44 68999999999999999998
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
++..
T Consensus 243 ~~~~ 246 (282)
T cd03291 243 SELQ 246 (282)
T ss_pred HHHH
Confidence 7653
No 311
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.2e-37 Score=350.71 Aligned_cols=185 Identities=33% Similarity=0.496 Sum_probs=157.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ ++++|+|+|+++++||.+||+||||||||||+|+|+|.++++ +|+|.+||.+++.
T Consensus 334 ~I~~~~vsf~Y~~------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~ 404 (529)
T TIGR02868 334 TLELRDLSFGYPG------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQD 404 (529)
T ss_pred eEEEEEEEEecCC------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHH
Confidence 5999999998852 345999999999999999999999999999999999999985 9999999998642
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSG 183 (697)
.++.++||+|++.+|+. |++|||.++. | ..++++ ++++++..+ |++..||.+|+ ....|||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSG 473 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATDEE----LWAALERVGLADWLRSLPDGLDTVLGE-GGARLSG 473 (529)
T ss_pred HHHhheEEEccCcccccc-cHHHHHhccC----C-CCCHHH----HHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCH
Confidence 24679999999999987 9999999862 1 234444 334444444 44567999987 4457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
|||||++|||||+++|++|+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999863 479999999985
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=342.56 Aligned_cols=209 Identities=24% Similarity=0.354 Sum_probs=174.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
|+++||++.+. ++++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|. ..
T Consensus 2 l~i~~ls~~~~-------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~ 65 (530)
T PRK15064 2 LSTANITMQFG-------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ER 65 (530)
T ss_pred EEEEEEEEEeC-------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 78999999873 356999999999999999999999999999999999999874 899999873 45
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhh-c-----------cCCCC-----------------CCHHHHHHHHHHHHHHcCCC
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAH-L-----------RLPSS-----------------MSKEDIKSHVDGTILELGLH 166 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~-l-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~ 166 (697)
++|++|++.+++.+||+|++.++.. . ..+.. ....+.+++++++++.+||.
T Consensus 66 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 145 (530)
T PRK15064 66 LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145 (530)
T ss_pred EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 9999999999999999999987531 0 00000 00012345688899999997
Q ss_pred ccc-CccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHH
Q 046969 167 DCA-DTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVF 245 (697)
Q Consensus 167 ~~~-d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~ 245 (697)
+.. +..+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++ ..+.
T Consensus 146 ~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~ 216 (530)
T PRK15064 146 EEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLN 216 (530)
T ss_pred hhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHH
Confidence 643 3444 57999999999999999999999999999999999999999999864 589999999997 5788
Q ss_pred HhccceeeecCCee-eeecChhhHH
Q 046969 246 ALFDDLFLLSGGET-VYFGEAKLAV 269 (697)
Q Consensus 246 ~l~D~v~lL~~G~i-v~~G~~~~~~ 269 (697)
++||++++|++|++ ++.|++++..
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999 4888877543
No 313
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.3e-36 Score=348.02 Aligned_cols=198 Identities=32% Similarity=0.484 Sum_probs=167.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+++ .++++|+|+|++++|||.++|+||||||||||+|+|+|.+++. +|+|.+||.+++.
T Consensus 320 ~i~~~~v~f~y~~-----~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADA 391 (529)
T ss_pred eEEEEEEEEECCC-----CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCH
Confidence 5999999999853 2357999999999999999999999999999999999999985 8999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------cccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-------DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+|+. |++|||.++.. ..++++ +++.++..++. +..||.+|+ ....||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~~~----i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LS 460 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASDAE----IRRALERAGLDEFVAALPQGLDTLIGE-GGAGLS 460 (529)
T ss_pred HHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCHHH----HHHHHHHcCcHHHHHhCcccccchhcc-ccccCC
Confidence 24679999999999976 99999988531 223333 44455555543 456888886 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 461 gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 999999999999999999999999999999999999999999975 5899999999983 45789999875
No 314
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-36 Score=379.18 Aligned_cols=213 Identities=20% Similarity=0.313 Sum_probs=181.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. ..+++|+|+|++++|||.+||+|+||||||||+++|.|.+++. +|+|.+||.+++.
T Consensus 1234 ~I~f~nVsf~Y~~-----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred cEEEEEEEEEECC-----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCH
Confidence 5999999999842 2357999999999999999999999999999999999999885 8999999998742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.++|||||+.+|+. |+||||.+.. ..++++. .++++..++ .+..||.+|+ ....||
T Consensus 1306 ~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdeei----~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LS 1373 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDADL----WEALERAHIKDVIDRNPFGLDAEVSE-GGENFS 1373 (1495)
T ss_pred HHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHHHH----HHHHHHcCCHHHHHhCcCCCCceecC-CCCCCC
Confidence 25789999999999987 9999997531 2344443 334444443 4567888886 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++ ....||+|++|++|++++.
T Consensus 1374 gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4799999999984 3456999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++.++
T Consensus 1451 Gt~~eLl~ 1458 (1495)
T PLN03232 1451 DSPQELLS 1458 (1495)
T ss_pred CCHHHHHh
Confidence 99987653
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8e-36 Score=343.13 Aligned_cols=209 Identities=26% Similarity=0.364 Sum_probs=174.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++||++.+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------
Confidence 3689999999873 1367999999999999999999999999999999999999874 899999752
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhh-cc------------CCCCCC--------------------HHHHHHHHHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAH-LR------------LPSSMS--------------------KEDIKSHVDGTI 160 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~------------~~~~~~--------------------~~~~~~~v~~~l 160 (697)
..+|||+|++.+++.+||.||+.+... .+ ...... ..+..+++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999987531 00 000000 001245678889
Q ss_pred HHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 161 LELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 161 ~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
+.+||.. .++.+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||+++|++
T Consensus 150 ~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~ 220 (556)
T PRK11819 150 DALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR 220 (556)
T ss_pred HhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH
Confidence 9999964 56655 4799999999999999999999999999999999999999999999873 5999999997
Q ss_pred cHHHHHhccceeeecCCeee-eecChhh
Q 046969 241 SSEVFALFDDLFLLSGGETV-YFGEAKL 267 (697)
Q Consensus 241 ~~~i~~l~D~v~lL~~G~iv-~~G~~~~ 267 (697)
.++.+++|++++|++|+++ +.|+.++
T Consensus 221 -~~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 221 -YFLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred -HHHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 5788999999999999986 7887764
No 316
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.8e-36 Score=378.16 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. ..+++|+|+|++|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+++.
T Consensus 1237 ~I~f~nVsf~Y~~-----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGL 1308 (1622)
T ss_pred cEEEEEEEEEeCC-----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCH
Confidence 5999999999842 2357999999999999999999999999999999999999885 8999999998742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LS 182 (697)
.++.+++||||+.+|+. |+||||.+.. ..++++.. ++++..+ +.+..||.||+ ....||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~----~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLS 1376 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLW----ESLERAHLKDVIRRNSLGLDAEVSE-AGENFS 1376 (1622)
T ss_pred HHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHH----HHHHHcCcHHHHHhCccccCccccC-CCCCCC
Confidence 25789999999999987 9999997642 23444433 3333333 34567899986 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||||++|++|+++++
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999975 4899999999984 3456999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++.++
T Consensus 1454 Gt~~eLl~ 1461 (1622)
T PLN03130 1454 DTPENLLS 1461 (1622)
T ss_pred CCHHHHHh
Confidence 99988653
No 317
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=340.65 Aligned_cols=215 Identities=22% Similarity=0.360 Sum_probs=176.8
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
..++++||++. .+.+|+|+|+.+++||+++|+|||||||||||++|+|..++. +|+|.++|+++...
T Consensus 249 ~~i~~~~l~~~---------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSL---------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCcccc---------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCC
Confidence 36889998874 135999999999999999999999999999999999999874 89999999876321
Q ss_pred -----CCeEEEEecCC---CCCCCCCHHHHHHHHh--hc-cCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCC
Q 046969 113 -----SGVLAYVTQEN---VLLGTLTVRETITYSA--HL-RLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRG 180 (697)
Q Consensus 113 -----~~~i~yv~Q~~---~l~~~lTV~E~l~~~~--~l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 180 (697)
++.++|++|+. .+++.+|+.+|..+.. .. ........++.++.++++++.+++. +..|+.+ ..
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----cc
Confidence 24589999985 4788898887743221 00 0000112334456788899999995 4567765 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ +++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999997 5788999999999999999
Q ss_pred eecChh
Q 046969 261 YFGEAK 266 (697)
Q Consensus 261 ~~G~~~ 266 (697)
..++++
T Consensus 471 ~~~~~~ 476 (491)
T PRK10982 471 GIVDTK 476 (491)
T ss_pred EEEccc
Confidence 777553
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-35 Score=307.02 Aligned_cols=188 Identities=23% Similarity=0.299 Sum_probs=156.4
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCH
Q 046969 57 LLQGLYGYAE-----PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 57 iL~~vs~~i~-----~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV 131 (697)
.++++++.++ +||+++|+|||||||||||++|+|.+++. +|+|.++|. .++|++|+......+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCCH
Confidence 5666666665 79999999999999999999999999875 899999985 58999999887778899
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046969 132 RETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGL 211 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgL 211 (697)
+|++.+...... . ....++++++.+||.+..++.+ ..|||||||||+||++|+.+|++++|||||++|
T Consensus 79 ~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 79 RDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999976533211 1 1123567888999988777766 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeee--eecChhh
Q 046969 212 DSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETV--YFGEAKL 267 (697)
Q Consensus 212 D~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv--~~G~~~~ 267 (697)
|+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|+++..+ ..+++..
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999864 89999999997 5788899999999764333 3344443
No 319
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-37 Score=325.79 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=186.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
-.++|+|+++.+. +.|++|+||||++.||+.+|++||||+||||++++|....+-+ +|.|.+||++++.
T Consensus 536 G~i~fsnvtF~Y~------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 536 GKIEFSNVTFAYD------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVT 606 (790)
T ss_pred CeEEEEEeEEecC------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHH
Confidence 3689999999875 4789999999999999999999999999999999999998764 9999999999752
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH--HHHHH-HcCCCcccCccccCccCCCCCHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHV--DGTIL-ELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v--~~~l~-~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.||.||||..||.+ |+..||.|+. | +.+.+|..+.+ .++-+ .+++.+..+|.||+... .|||||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGE 679 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGE 679 (790)
T ss_pred HHHHHHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcc
Confidence 25789999999999987 9999999863 2 33455543322 22222 37889999999998555 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||||+|||+++++|.+++|||.||+||..+.+.|...|.+++. ++|-|++.|..+. + -.+|.|+++++|+|++.|..
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILvi~~G~IvErG~H 756 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILVISNGRIVERGRH 756 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEEEeCCeEeecCcH
Confidence 9999999999999999999999999999999999999999987 6889999999863 3 45899999999999999998
Q ss_pred hhHHH
Q 046969 266 KLAVE 270 (697)
Q Consensus 266 ~~~~~ 270 (697)
++.+.
T Consensus 757 eeLl~ 761 (790)
T KOG0056|consen 757 EELLK 761 (790)
T ss_pred HHHHh
Confidence 86543
No 320
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=290.40 Aligned_cols=192 Identities=25% Similarity=0.420 Sum_probs=168.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CCCeEEEEecCCCCCC
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----DSGVLAYVTQENVLLG 127 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~l~~ 127 (697)
.+.+||+|+|+.+.+||..+|.||||||||||||+++.+.+++ +|++++.|++.+. .+..++|+.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4678999999999999999999999999999999999999985 9999999998742 3567999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDE 206 (697)
. ||++|+.|...+|..+. .++...++++.++|.+. .++. +..||||||||++|+|.|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 99999999888774321 23456678889999763 3443 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 207 PSSGLDSASAFFVIQTLRNIA-RDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 207 PtsgLD~~~a~~i~~~L~~la-~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|||.||+.++..|-+.|.++. .+.+.++.+||++ ++..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999987 4689999999998 577899999999999876
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-35 Score=341.61 Aligned_cols=203 Identities=21% Similarity=0.257 Sum_probs=168.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ++++|+|+|+++++||.+||+||||||||||+++|+|.+++. +|+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQD------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeCC------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCH
Confidence 5999999998852 346999999999999999999999999999999999999885 9999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++||+|++.+|+. |++|| . ... .++.+++.++.+++.+..+..-|......||||||||+
T Consensus 393 ~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQ-LLGPE---G------KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred HHHhhheEEEecChhHHHH-hhccc---c------Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence 24679999999998876 88877 1 111 12346778888888764432111001357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
+|||+++.+|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|++ +..+.||++++|++|++++.
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999987654 589999999997 35778999999999999876
No 322
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.8e-36 Score=338.55 Aligned_cols=214 Identities=22% Similarity=0.329 Sum_probs=173.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++|+++.++ ++.+|+|+|+.+++||+++|+|||||||||||++|+|..++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSYN-------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEEC-------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCC
Confidence 3699999999873 356999999999999999999999999999999999986531 37999999976421
Q ss_pred ----CCCeEEEEecCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCC
Q 046969 112 ----DSGVLAYVTQENVLLG--TLTVRETITYSAHL--RLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGIS 182 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LS 182 (697)
.++.++|++|++.++. ..|++|++.+.... ....... ++.+++++++++.+||.+ ..++.+ ..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCC
Confidence 1356999999876543 35777776543211 1111112 233457889999999987 777766 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCcHHHHH-hccceeeecCCeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDG-RTVISSIHQPSSEVFA-LFDDLFLLSGGETV 260 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g-~tvi~~~Hqp~~~i~~-l~D~v~lL~~G~iv 260 (697)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||+++|++ .++.+ ++|++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceE
Confidence 999999999999999999999999999999999999999999998876 5799999997 46766 59999999999988
Q ss_pred eec
Q 046969 261 YFG 263 (697)
Q Consensus 261 ~~G 263 (697)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=339.48 Aligned_cols=202 Identities=27% Similarity=0.358 Sum_probs=173.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..++++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|+
T Consensus 318 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGFD-------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEeeC-------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------
Confidence 3699999999873 356999999999999999999999999999999999998874 899999874
Q ss_pred CeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHHHH
Q 046969 114 GVLAYVTQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 114 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
+.+||++|+.. +++.+||+|++.+... . . +.+++++++++.+|+. +..++.+ ..|||||||||+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~ 448 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRML 448 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHH
Confidence 46999999863 5677999999864211 1 1 1134577899999994 5677766 479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee-eecChhhH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKLA 268 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~~~ 268 (697)
||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++||++ .++.++||++++|++|+++ +.|++++.
T Consensus 449 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 449 FGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 999999999999999999999999999999999886 45999999997 5788899999999999998 88887753
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.8e-35 Score=340.04 Aligned_cols=209 Identities=26% Similarity=0.357 Sum_probs=172.5
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++.+. ..+.+|+|+|+++++|++++|+|||||||||||++|+|..++. +|+|.+++. .
T Consensus 4 ~i~~~nls~~~~------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~ 68 (552)
T TIGR03719 4 IYTMNRVSKVVP------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------I 68 (552)
T ss_pred EEEEeeEEEecC------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------C
Confidence 589999999873 1357999999999999999999999999999999999999874 899999862 4
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhc-c------------CCCCCCH--------------------HHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHL-R------------LPSSMSK--------------------EDIKSHVDGTIL 161 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~------------~~~~~~~--------------------~~~~~~v~~~l~ 161 (697)
.+|||+|++.+++.+||+||+.+.... + ....... .+...+++++++
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 699999999999999999999875321 0 0000000 001245677788
Q ss_pred HcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 162 ELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 162 ~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
.+|+.. .++.+ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|||+++|++
T Consensus 149 ~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~- 218 (552)
T TIGR03719 149 ALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR- 218 (552)
T ss_pred hCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-
Confidence 888854 45554 579999999999999999999999999999999999999999999876 35999999997
Q ss_pred HHHHHhccceeeecCCeee-eecChhhH
Q 046969 242 SEVFALFDDLFLLSGGETV-YFGEAKLA 268 (697)
Q Consensus 242 ~~i~~l~D~v~lL~~G~iv-~~G~~~~~ 268 (697)
..+..+||++++|++|+++ +.|+.++.
T Consensus 219 ~~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 219 YFLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred HHHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 5788899999999999976 77887754
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-36 Score=298.69 Aligned_cols=218 Identities=27% Similarity=0.390 Sum_probs=185.0
Q ss_pred CccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 046969 31 ARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 110 (697)
.....++++|+++.+ .+|+||+|+|++|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+...
T Consensus 27 ~~~~li~l~~v~v~r-------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G 96 (257)
T COG1119 27 INEPLIELKNVSVRR-------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFG 96 (257)
T ss_pred CCcceEEecceEEEE-------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeecc
Confidence 344679999999986 3688999999999999999999999999999999999999885 899999999753
Q ss_pred ------cCCCeEEEEecC--CCCCCCCCHHHHHHHH--hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCC
Q 046969 111 ------VDSGVLAYVTQE--NVLLGTLTVRETITYS--AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 111 ------~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
..++.||+|.-. ..+.+..+|+|-+.-+ +..-.......++..+++..+++.+|+.+.+|+..+ .
T Consensus 97 ~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~ 171 (257)
T COG1119 97 KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----S 171 (257)
T ss_pred CCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----h
Confidence 125789999753 4456677888876422 222222212234556788999999999999999875 6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD--GRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~--g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
||-||||||-|||||+++|.+||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+-..|++++++++|+
T Consensus 172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~ 250 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGE 250 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999975 89999999997 68999999999999999
Q ss_pred eeeecC
Q 046969 259 TVYFGE 264 (697)
Q Consensus 259 iv~~G~ 264 (697)
++++|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 999874
No 326
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-35 Score=373.48 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++. ..+.+|+|||++|+|||.+||+|+||||||||+++|.|++++. +|+|++||.+++.
T Consensus 1308 ~I~f~nVsf~Y~~-----~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGL 1379 (1560)
T ss_pred eEEEEEEEEEeCC-----CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCH
Confidence 5999999999853 2356999999999999999999999999999999999999885 8999999998742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------cccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-------DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LS 182 (697)
.++.++||||++.+|+. |++|||... ...++++ +.++++..||. +..||.+|+ ....||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sdee----I~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLS 1447 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASSAE----VWAALELVGLRERVASESEGIDSRVLE-GGSNYS 1447 (1560)
T ss_pred HHHHhcceEECCCCccccc-cHHHHhCcc------cCCCHHH----HHHHHHHCCChHHHhhCcccccccccC-CcCcCC
Confidence 25789999999999987 999999642 1234444 44555555553 457888986 456799
Q ss_pred HHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTK-PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~-P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEE
Confidence 9999999999999996 89999999999999999999999999864 4799999999973 567799999999999999
Q ss_pred ecChhhHHH
Q 046969 262 FGEAKLAVE 270 (697)
Q Consensus 262 ~G~~~~~~~ 270 (697)
.|++++.++
T Consensus 1525 ~Gt~~eLl~ 1533 (1560)
T PTZ00243 1525 MGSPRELVM 1533 (1560)
T ss_pred ECCHHHHHh
Confidence 999987643
No 327
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-35 Score=373.71 Aligned_cols=213 Identities=20% Similarity=0.267 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. ..+.+|+|+|++++|||.+||+|+||||||||+++|.|++++. +|+|.+||.+++.
T Consensus 1284 ~I~f~nVsf~Y~~-----~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred cEEEEEEEEEeCC-----CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCH
Confidence 5999999999853 2346999999999999999999999999999999999999885 8999999999752
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
.++.++|||||+.+|+. |+||||.... ..++++. .++++..++ .+..||.||+ ....||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdeei----~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LS 1423 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEEV----WWALELAHLKTFVSALPDKLDHECAE-GGENLS 1423 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHHH----HHHHHHcCcHHHHhhCccCCCceecC-CCCcCC
Confidence 25789999999999997 9999996321 2445543 344454444 3567888886 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....+|||++|++|+++++
T Consensus 1424 gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4799999999974 4566999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++.++
T Consensus 1501 G~~~eLl~ 1508 (1522)
T TIGR00957 1501 GAPSNLLQ 1508 (1522)
T ss_pred CCHHHHHh
Confidence 99987654
No 328
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-36 Score=301.84 Aligned_cols=207 Identities=26% Similarity=0.359 Sum_probs=181.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----CCeEEEEe-cCCCCCCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD----SGVLAYVT-QENVLLGTL 129 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----~~~i~yv~-Q~~~l~~~l 129 (697)
..+++|+||.|++|++++.+|||||||||+||+|+|++.|. +|.|.+||..+-.. -+.+++|+ |.-.+.-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 45899999999999999999999999999999999999885 99999999975321 24567764 555666666
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046969 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS 209 (697)
Q Consensus 130 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts 209 (697)
.+.|.+.....++ ..++++.+++.+.+.+.++|+...+..+ |.||-|||.|+.||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 7888888766654 5778888999999999999998877755 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHH
Q 046969 210 GLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFA 273 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~ 273 (697)
|||..++..|.+.|++..++ +.||+.+||+. +++..+||||++++.|+++|+|+.++..+-|.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999999874 89999999997 58999999999999999999999988766553
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.1e-35 Score=338.30 Aligned_cols=209 Identities=21% Similarity=0.258 Sum_probs=170.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++|+++.+++ .....+.+|+|+|+++++||++||+||||||||||+++|+|.++|+ +|+|.+||.+++.
T Consensus 336 ~~i~~~~v~f~y~~--~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKA--PEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCC--CCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 35999999999853 1001246999999999999999999999999999999999999885 9999999998742
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccc-cCccCCCCCHHHHH
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVI-GNWHLRGISGGEKK 187 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v-g~~~~~~LSGGerq 187 (697)
.++.++||+|++.+|.. |++||+. + .. .++.+++.++.+++.+..+... |......|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-HA----SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-ch----hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 24679999999999876 8888831 1 11 2344677888888876544332 11223579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR-NIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~-~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|++|||+|+.+|++|+|||||++||+.++..+.+.+. .++.+|+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 45567899999999974 5678999999999999753
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.4e-35 Score=366.48 Aligned_cols=212 Identities=25% Similarity=0.396 Sum_probs=171.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEecCc--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN-GKKTRV-- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n-G~~~~~-- 111 (697)
.++++||++.++. . +.+++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|++| |.++..
T Consensus 382 ~I~~~nVsf~Y~~---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDT---R-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCC---C-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCC
Confidence 6999999999853 1 2357999999999999999999999999999999999999985 9999995 566531
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhc-c---------CCC----C--C---------------------C---
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHL-R---------LPS----S--M---------------------S--- 148 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~---------~~~----~--~---------------------~--- 148 (697)
.++.+|||+|++.+|+. ||+|||.++... + .+. . . .
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 24679999999999985 999999986411 0 000 0 0 0
Q ss_pred --------HHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 149 --------KEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 149 --------~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
.+..++.+.++++.+++ .+..||.+|. ....||||||||++|||||+.+|+||+||||||+||+
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 00112345666666654 4456888876 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 214 ASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 214 ~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
.++..|.+.|+++++ +|+|+|+++|+++ .+ +.||+|++|++|
T Consensus 613 ~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999999986 5899999999984 44 789999999886
No 331
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.4e-35 Score=366.84 Aligned_cols=211 Identities=26% Similarity=0.342 Sum_probs=180.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. ..+.+|+|+|++|+|||.+||+|+||||||||+++|.|+++ . +|+|++||.++..
T Consensus 1217 ~I~f~nVs~~Y~~-----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred eEEEEEEEEEeCC-----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCH
Confidence 5999999999853 24679999999999999999999999999999999999986 2 8999999999742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------cccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-------DCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LS 182 (697)
.++.++||||++.+|+. |+||||.... ..++++ +.++++..+|. +..|+.||+ ....||
T Consensus 1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~tdee----i~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLS 1355 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSDEE----IWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLS 1355 (1490)
T ss_pred HHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCHHH----HHHHHHHCCCHHHHHhCcccccccccc-CCCcCC
Confidence 25789999999999997 9999996421 233443 45566666653 457888886 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.
T Consensus 1356 gGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999864 4799999999974 4566999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|++++.+
T Consensus 1433 g~p~~Ll 1439 (1490)
T TIGR01271 1433 DSIQKLL 1439 (1490)
T ss_pred CCHHHHH
Confidence 9998765
No 332
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=285.04 Aligned_cols=218 Identities=24% Similarity=0.400 Sum_probs=190.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecC--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG-KKTR-- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG-~~~~-- 110 (697)
..|+.+||++++. .-.+|+++|+++.|||+-+|+|||||||||+|++|+|..+|. +|+|+++| .++.
T Consensus 4 ~iL~~~~vsVsF~-------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSFG-------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEEc-------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccC
Confidence 5789999999984 456899999999999999999999999999999999999884 89999999 5542
Q ss_pred ----cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCC
Q 046969 111 ----VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS-----SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181 (697)
Q Consensus 111 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 181 (697)
..+..||--+|.+..|..+||+|||..+.+...+- .....+-++++++++...||.+.+|...+ .|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hh
Confidence 12356888999999999999999999986532110 01123445689999999999999998876 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|.||||++.|++-++.+|++|++|||++|+--+...+.-++|+.+|. +++|+++-||. ..+.+++|+|-+|++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999999999999999999987 58999999997 68999999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|+.+++
T Consensus 227 EGsld~v 233 (249)
T COG4674 227 EGSLDEV 233 (249)
T ss_pred cccHHHh
Confidence 9998764
No 333
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-34 Score=333.44 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=169.9
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++||++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSFG-------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEEC-------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------
Confidence 4699999999873 356999999999999999999999999999999999999874 899999542
Q ss_pred CeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHH
Q 046969 114 GVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 114 ~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
..+||++|+. .+++.+||.|++.+...... .... ...+.++++.+|+.+ ..++.+ ..|||||||||+|
T Consensus 387 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~l 456 (556)
T PRK11819 387 VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHL 456 (556)
T ss_pred eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 2599999996 78889999999998653321 1111 123456889999964 567765 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC-Ceee-eecChh
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG-GETV-YFGEAK 266 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~-G~iv-~~G~~~ 266 (697)
|++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||+++|++ .++.++||++++|++ |++. +.|+.+
T Consensus 457 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 457 AKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 999999999999999999999999999999999873 4 899999997 578899999999985 7876 466554
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.4e-34 Score=333.09 Aligned_cols=199 Identities=27% Similarity=0.310 Sum_probs=172.0
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++++|+++.+. . ..|+++|+++++||+++|+|||||||||||++|+|.+++. +|+|.++
T Consensus 338 ~~~l~~~~ls~~~~-------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG-------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE------- 399 (590)
T ss_pred ceEEEEcceEEEEC-------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe-------
Confidence 34699999998763 1 2489999999999999999999999999999999999874 8999986
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+||.+..|+.+ ..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHH
Confidence 1489999998888899999999875321 111 124678999999998888866 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+ .++..++||+++|++ ++...|..
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999999999999999999999999999875 89999999997 578899999999964 77777764
No 335
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-34 Score=330.24 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=169.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..++++||++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..++. +|+|.+++.
T Consensus 321 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGFG-------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEEC-------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------
Confidence 3699999999873 356999999999999999999999999999999999998874 899999542
Q ss_pred CeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHH
Q 046969 114 GVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 114 ~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
..+||++|+. .+++.+||.|++.+...... .... ...++++++.+|+.+ ..++.+ ..|||||||||+|
T Consensus 385 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~l 454 (552)
T TIGR03719 385 VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHL 454 (552)
T ss_pred eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 2599999996 48888999999998653221 1111 123557889999964 467665 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC-Ceee-eecChh
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG-GETV-YFGEAK 266 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~-G~iv-~~G~~~ 266 (697)
|++|+.+|++|||||||+|||+.+...+.+.|+++. .|||+++|++ ..+.++||++++|++ |+++ +.|+.+
T Consensus 455 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 455 AKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999999999999999973 3899999997 578889999999986 5776 556543
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=294.29 Aligned_cols=192 Identities=27% Similarity=0.362 Sum_probs=166.6
Q ss_pred ceEEEEEEEEEecccc-cccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFG-NNKP-TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~-~~~~-~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
..++.+||++.++... .+.. ...+++||||.+++||+++|+|.||||||||-++|.|+.+|+ +|+|.++|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhh
Confidence 4689999999886421 1111 247999999999999999999999999999999999999985 9999999987532
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.. +++..+++.++++.+||.. .+++ ++.+||||||||+.
T Consensus 80 ~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQrQRi~ 119 (268)
T COG4608 80 LS-----------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQRQRIG 119 (268)
T ss_pred cc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhhhhHH
Confidence 11 3456678999999999864 5555 45799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|||||+.+|+++++|||+|.||...+.+|+++|+++.++ |.|.++++||. +.+..++||+.+|..|++|+.|+.++..
T Consensus 120 IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 120 IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 999999999999999999999999999999999999985 99999999996 5788999999999999999999998653
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-34 Score=301.35 Aligned_cols=189 Identities=29% Similarity=0.387 Sum_probs=160.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCc-----C--CCeE
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVL-----------FNGKKTRV-----D--SGVL 116 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~-----~--~~~i 116 (697)
+.+|+|+| .+++||+++|+|||||||||||++|+|+++++ +|+|. ++|++... . ...+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 36999999 59999999999999999999999999999885 99996 78876521 1 1247
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh
Q 046969 117 AYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL 196 (697)
Q Consensus 117 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll 196 (697)
+|++|+..+++. ++.+++.+... ..+.++.+.++++.+||.+..++.+ +.||||||||++||++|+
T Consensus 90 ~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~ 155 (255)
T cd03236 90 IVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALA 155 (255)
T ss_pred eeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHH
Confidence 899999888875 88888876421 1233456788999999988777655 479999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 197 TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 197 ~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++++.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999988899999999997 56778999999995 6676654
No 338
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=301.63 Aligned_cols=227 Identities=23% Similarity=0.366 Sum_probs=197.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH--VIMTGNVLFNGKKTR- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~- 110 (697)
..|+++||++.+.. ......++++|||.+++||.+||+|.||||||-..+.+.|+++.. ...+|+|.++|++.-
T Consensus 5 ~lL~v~nLsV~f~~---~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 5 PLLSIRNLSVAFHQ---EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred cceeeeccEEEEec---CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 36899999998864 114678999999999999999999999999999999999998752 345789999999851
Q ss_pred --------cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCC
Q 046969 111 --------VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 111 --------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
.+...|++++|++ .|-|-.|+.+-+.-..++. ..+++++.++++.++++.+|+.+-..++ +.++.+
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 1235799999998 5788889988887766554 4677888899999999999998765554 347889
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|||||||||.||+||+++|++|+.||||++||...+.+|++.|++|.++ |..++++|||. .-+.+++|||++|.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999875 99999999997 578899999999999999
Q ss_pred eeecChhhH
Q 046969 260 VYFGEAKLA 268 (697)
Q Consensus 260 v~~G~~~~~ 268 (697)
++.|++++.
T Consensus 237 vE~~~t~~l 245 (534)
T COG4172 237 VETGTTETL 245 (534)
T ss_pred eecCcHHHH
Confidence 999998754
No 339
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-33 Score=282.86 Aligned_cols=222 Identities=22% Similarity=0.268 Sum_probs=193.7
Q ss_pred eEEEEEEEEEecccc-----------------ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 046969 35 FLVWENLFAVLPNFG-----------------NNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVI 97 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~-----------------~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~ 97 (697)
.+.++||++.++.+. .......+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 567777777665321 0123467999999999999999999999999999999999999995
Q ss_pred ceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCcc
Q 046969 98 MTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWH 177 (697)
Q Consensus 98 ~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 177 (697)
+|+|.++|+-.... .=.-.+-|.+|.+||+.+.+.+. .+++++++++++++++.-+|.+..|.+|
T Consensus 81 -~G~v~v~G~v~~li-------~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 -SGKVKVTGKVAPLI-------ELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred -CceEEEcceEehhh-------hcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 99999999743211 11224567899999999988765 5789999999999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
+.+|-||+-|++.|.+.-.+|++|++||-.+-.|+.-+.+..+.++++.++++|||+++|++ ..+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 67999999999999999999999999999999999999999999999988889999999997 5899999999999999
Q ss_pred eeeeecChhhHHHHHHhc
Q 046969 258 ETVYFGEAKLAVEFFAEA 275 (697)
Q Consensus 258 ~iv~~G~~~~~~~~f~~~ 275 (697)
++.+.|.++++.++|.+.
T Consensus 224 ~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 224 QIRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEEcCCHHHHHHHHHHh
Confidence 999999999999988753
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=331.99 Aligned_cols=201 Identities=26% Similarity=0.419 Sum_probs=170.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++||++.+. .+.+|+|+|+.+++|++++|+|||||||||||++|+|.+++. +|+|.+++.
T Consensus 311 ~~l~~~~l~~~y~-------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGYG-------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEeC-------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------
Confidence 4699999999873 356999999999999999999999999999999999999874 899999742
Q ss_pred CeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHHHH
Q 046969 114 GVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 114 ~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
..+||++|+. .+.+..|+.+++.- .. + ....+.+.++++.+++. +..++.++ .|||||||||+
T Consensus 375 ~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~ 440 (638)
T PRK10636 375 IKLGYFAQHQLEFLRADESPLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLV 440 (638)
T ss_pred EEEEEecCcchhhCCccchHHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHH
Confidence 2589999974 35566788877642 11 1 12245678899999996 46777664 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee-eecChhhH
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKLA 268 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~~~ 268 (697)
||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||+++||+ ..+.++||++++|++|+++ +.|+.++.
T Consensus 441 La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999999999999999999987 34 999999996 5788999999999999997 88988754
No 341
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=7.1e-34 Score=270.79 Aligned_cols=144 Identities=34% Similarity=0.472 Sum_probs=131.8
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
++++|+++.+. .+.+|+++|+.+++||+++|+||||||||||+++|+|.+++. +|+|.++|+ ..
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~ 64 (144)
T cd03221 1 IELENLSKTYG-------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VK 64 (144)
T ss_pred CEEEEEEEEEC-------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EE
Confidence 46788988763 246999999999999999999999999999999999999874 999999985 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
++|++| ||+||+||++||++|
T Consensus 65 i~~~~~-----------------------------------------------------------lS~G~~~rv~laral 85 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred EEEEcc-----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 899998 899999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 196 LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
+.+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++ +++.+++|++++|++|+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999987 47999999997 57888999999999985
No 342
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=343.68 Aligned_cols=222 Identities=28% Similarity=0.455 Sum_probs=202.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..+..++|++.+.. ..+ +++++|+.+++||+.+++|||||||||++|+|.|..+++ +|++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~-----~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG-----KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc-----hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCcccccc
Confidence 46778888877642 122 999999999999999999999999999999999999885 9999999998642
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++.+||+||+|.+++.||.||+|.+.++++ +...++.++.++.+++.+||.+.+|+.++ .+|||+||
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchh
Confidence 3567999999999999999999999999998 46677888889999999999999999875 69999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+++|.+|+.+|++++|||||+|+||.+++.+.++++++.++|+.||+|+|.. +|...+|||+.+|.+|++..-|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999999888999999996 78999999999999999999999998
Q ss_pred HHHHHH
Q 046969 268 AVEFFA 273 (697)
Q Consensus 268 ~~~~f~ 273 (697)
....|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 887664
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-34 Score=278.70 Aligned_cols=216 Identities=27% Similarity=0.420 Sum_probs=177.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
+..+|+++.+.. ..+..+++|+++|+++..|+++-|+|.||||||||+|+|+|.+.++ +|+|.++|.++..
T Consensus 2 i~~~~~~~~f~~--g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~ 76 (263)
T COG1101 2 ISLSNATKTFFK--GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76 (263)
T ss_pred cccccceeeecC--CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHH
Confidence 345666666542 1225688999999999999999999999999999999999999885 9999999998742
Q ss_pred -CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHH--cCCCcccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSK---EDIKSHVDGTILE--LGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~d~~vg~~~~~~LSG 183 (697)
+...++-|+||+ ..++.||+.||+..+..--.....+. ...++...+.++. +||++..++.+| -|||
T Consensus 77 ~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSG 151 (263)
T COG1101 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSG 151 (263)
T ss_pred HHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccc
Confidence 124578899997 46999999999998764211111221 2233334444554 577899999887 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||-|++++|-++.|+||||||-|++|||.++..||+.-.++.++ +.|.+++||+. .+..++-+|+++|++|+||.+
T Consensus 152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999999999999998875 78999999997 578899999999999999975
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.9e-33 Score=328.03 Aligned_cols=203 Identities=27% Similarity=0.372 Sum_probs=170.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++||++.+. ++.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.+ |.+
T Consensus 318 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~----- 381 (635)
T PRK11147 318 IVFEMENVNYQID-------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK----- 381 (635)
T ss_pred ceEEEeeeEEEEC-------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----
Confidence 4699999999873 356999999999999999999999999999999999998874 899998 432
Q ss_pred CeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHHHHH
Q 046969 114 GVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 114 ~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
-.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.++ .|||||||||+|
T Consensus 382 ~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~l 451 (635)
T PRK11147 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLL 451 (635)
T ss_pred cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHH
Confidence 2599999985 6889999999998754211 011 1134577889999995 45677664 799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec-CCeeee-ecChh
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS-GGETVY-FGEAK 266 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~-~G~iv~-~G~~~ 266 (697)
|++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++|||. ..+..+||++++|+ +|++.. .|+-+
T Consensus 452 a~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~ 524 (635)
T PRK11147 452 ARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYH 524 (635)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHH
Confidence 99999999999999999999999999999999886 45999999996 57889999999997 798764 56544
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.7e-33 Score=276.44 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=135.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
.+++|+|+|+++++|++++|+||||||||||||+|.+ .+|+|.++|......+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH------------
Confidence 5679999999999999999999999999999999963 279999998743222344778877
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCC
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSIALEILTK--PQLLFLDEPSSG 210 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~--P~lllLDEPtsg 210 (697)
.+.++.++|.. ..+..+ +.||||||||++||++|+.+ |++++|||||+|
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 13566778865 355544 57999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 211 LDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 211 LD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
||+.++..+.+.|++++++|+|||+++|++. ++ +.+|++++|.+|+..+.|
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCCc
Confidence 9999999999999999878999999999974 44 689999999776554444
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-33 Score=277.12 Aligned_cols=154 Identities=29% Similarity=0.435 Sum_probs=134.5
Q ss_pred EEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEE
Q 046969 39 ENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAY 118 (697)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~y 118 (697)
.||++.+. ++.+++++ +.+++||+++|+||||||||||+|+|+|+++++ +|+|.++|.. ++|
T Consensus 4 ~~l~~~~~-------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~ 65 (177)
T cd03222 4 PDCVKRYG-------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVY 65 (177)
T ss_pred CCeEEEEC-------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEE
Confidence 46666652 45688885 899999999999999999999999999999875 8999999863 788
Q ss_pred EecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhC
Q 046969 119 VTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 119 v~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
++|+.. ||||||||++||++|+.+
T Consensus 66 ~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~~ 89 (177)
T cd03222 66 KPQYID--------------------------------------------------------LSGGELQRVAIAAALLRN 89 (177)
T ss_pred EcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 888532 899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCcHHHHHhccceeeecCCeeeee--cChhh
Q 046969 199 PQLLFLDEPSSGLDSASAFFVIQTLRNIARDG-RTVISSIHQPSSEVFALFDDLFLLSGGETVYF--GEAKL 267 (697)
Q Consensus 199 P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g-~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~--G~~~~ 267 (697)
|++++|||||+|||+.++..+.+.|+++++++ .|||+++|++ .++.++||++++|+++-.++. |++..
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999999999999999999998775 9999999997 577889999999998766654 65543
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.3e-33 Score=330.15 Aligned_cols=196 Identities=26% Similarity=0.347 Sum_probs=161.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++
T Consensus 451 ~i~~~nv~~~~~~------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~ 515 (659)
T TIGR00954 451 GIKFENIPLVTPN------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KG 515 (659)
T ss_pred eEEEEeeEEECCC------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CC
Confidence 4899999997641 346999999999999999999999999999999999998874 89998875 35
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHcCCCcccCcccc----CccCCCCCHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRL--PSSMSKEDIKSHVDGTILELGLHDCADTVIG----NWHLRGISGGEKKR 188 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~--~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg----~~~~~~LSGGerqR 188 (697)
.++||+|++.+++. |++||+.+...... ....+ ++.++++++.+++.+..++..| ......||||||||
T Consensus 516 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQR 590 (659)
T TIGR00954 516 KLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQR 590 (659)
T ss_pred cEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHH
Confidence 69999999998887 99999987643210 00111 2346778888999876544322 01246899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
++|||+|+.+|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+
T Consensus 591 l~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 591 IAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999999999999999999999999999998876 3899999999974 458899999997
No 348
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.1e-33 Score=352.92 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=170.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++|+++.++. . +++++|+|+|+++++||.++|+||||||||||+++|.|.+++. +|.+. ..++
T Consensus 614 ~I~~~~vsF~y~~---~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDS---K-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRG 679 (1495)
T ss_pred cEEEEeeEEEcCC---C-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecC
Confidence 5899999998752 1 2467999999999999999999999999999999999999874 66553 1235
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCcccCccccCccCCCCCHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-------LHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerq 187 (697)
.++||+|++.+++. |++|||.|+.. .++++ .+++++..+ |.+..||.||+. ...|||||||
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQ 747 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQ 747 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHH
Confidence 79999999999986 99999998742 23333 333444433 455678999974 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT-LRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~-L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|++||||+.++|+|++||||||+||+.++..+++. ++.. .+|+|+|++||+++ ....+|+|++|++|++++.|+.+
T Consensus 748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999998765 4443 36899999999974 56789999999999999999988
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+..
T Consensus 825 eL~ 827 (1495)
T PLN03232 825 ELS 827 (1495)
T ss_pred HHH
Confidence 764
No 349
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-33 Score=353.29 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=172.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEecCcCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMT-GNVLFNGKKTRVDS 113 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~I~~nG~~~~~~~ 113 (697)
.++++|+++.++. . +++.+|+|+|+++++||+++|+||||||||||+++|.|.+++. + |+|.+.
T Consensus 614 ~I~~~nvsf~y~~---~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~-------- 678 (1622)
T PLN03130 614 AISIKNGYFSWDS---K-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR-------- 678 (1622)
T ss_pred ceEEEeeEEEccC---C-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------
Confidence 5899999998752 1 2467999999999999999999999999999999999999874 8 899864
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCCHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGer 186 (697)
+.++||+|++.+++. |++|||.|+.. .+++ +.+++++..+| .+..+|.||+. ...||||||
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQK 746 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSP------FDPE----RYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQK 746 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCc------ccHH----HHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHH
Confidence 469999999999986 99999998642 2222 34445554444 45568999874 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQ-TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~-~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||++||||+..+|+|++||||||+||+.++..+++ .++.+. +|+|+|++||++ .....+|+|++|++|++++.|+.
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999998875 565543 589999999997 35778999999999999999998
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
++..
T Consensus 824 ~eL~ 827 (1622)
T PLN03130 824 EELS 827 (1622)
T ss_pred HHHH
Confidence 8764
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-33 Score=325.17 Aligned_cols=205 Identities=25% Similarity=0.378 Sum_probs=164.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
|+++||++.+. .+.+|+|+|+.|++|+++||+||||||||||||+|+|.++++ +|+|.++|. ..
T Consensus 2 i~i~nls~~~g-------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~ 65 (638)
T PRK10636 2 IVFSSLQIRRG-------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQ 65 (638)
T ss_pred EEEEEEEEEeC-------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 78999999873 467999999999999999999999999999999999998875 899999874 24
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHh-----------------------hccC-CCCCCHHHHHHHHHHHHHHcCCC-cccC
Q 046969 116 LAYVTQENVLLGTLTVRETITYSA-----------------------HLRL-PSSMSKEDIKSHVDGTILELGLH-DCAD 170 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~d 170 (697)
++|++|+...+ ..|+.+.+.-.. .+.. .......+.+++++++++.+|+. +..+
T Consensus 66 i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 66 LAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred EEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 88999865333 246555442110 0000 00000112345788999999997 5677
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccc
Q 046969 171 TVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 171 ~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
+.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+++|++ ..+.++||+
T Consensus 145 ~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~ 215 (638)
T PRK10636 145 RPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDK 215 (638)
T ss_pred Cchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCE
Confidence 7664 69999999999999999999999999999999999999999998875 57999999996 578899999
Q ss_pred eeeecCCeee-eecChh
Q 046969 251 LFLLSGGETV-YFGEAK 266 (697)
Q Consensus 251 v~lL~~G~iv-~~G~~~ 266 (697)
+++|++|+++ |.|+.+
T Consensus 216 i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 216 IIHIEQQSLFEYTGNYS 232 (638)
T ss_pred EEEEeCCEEEEecCCHH
Confidence 9999999986 567655
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.2e-34 Score=262.09 Aligned_cols=190 Identities=26% Similarity=0.397 Sum_probs=166.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---V 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~ 111 (697)
.++.+|++... +.+.+|-|+|++|.+||++-|||||||||||||..+.|.+.+....+|++++|++.++ .
T Consensus 2 ~l~l~nvsl~l-------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa 74 (213)
T COG4136 2 MLCLKNVSLRL-------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74 (213)
T ss_pred ceeeeeeeecC-------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch
Confidence 46788888654 3577999999999999999999999999999999999999988889999999999875 2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++++|.++||+.+||.++|.+||.|+. |....-+.++..++..+++.||....++- +..||||||-||++
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL 145 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVAL 145 (213)
T ss_pred hhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHH
Confidence 3678999999999999999999999874 33444456677789999999999888774 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCC
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA-RDGRTVISSIHQP 240 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la-~~g~tvi~~~Hqp 240 (697)
-|+|+..|+.++||||+|.||.+-+.+..+..-.-+ ..|..+|.+|||.
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 999999999999999999999999999988775544 4699999999995
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.9e-33 Score=324.64 Aligned_cols=204 Identities=25% Similarity=0.365 Sum_probs=166.5
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..++++||++.++. .+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~~------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYPG------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeCC------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------
Confidence 46999999998731 346999999999999999999999999999999999999874 899998763
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
..+||++|+. ...+++.++..+......+ ... .+.+.++++.+|+.+ ..++.+ ..|||||||||+||
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLA 639 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFA 639 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHH
Confidence 3599999985 3455666664332111111 112 245778899999974 566655 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee-eecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~~~ 268 (697)
++|+.+|++|+|||||+|||+.+...+++.|++. .| |||+++|++ ..+.++||++++|.+|+++ +.|+.++.
T Consensus 640 raL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 640 KITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999998888765 34 999999997 5788899999999999998 78877653
No 353
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=302.30 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=184.6
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
.-.+.|+++++.+. +.+++|+++|+.+++|+.+||+||||+||||++++|-..++.+ +|.|.+||++++.
T Consensus 260 ~g~v~F~~V~F~y~------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~v 330 (497)
T COG5265 260 LGAVAFINVSFAYD------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDV 330 (497)
T ss_pred cceEEEEEEEeecc------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHh
Confidence 34588999998764 4789999999999999999999999999999999999999885 9999999998642
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHH--cCCCcccCccccCccCCCCCHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-ILE--LGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.||.||||..||.+ |...|+.|+.. ..+.+|+.+.++.. +.. -.+.+..|+.||+.+. .||||
T Consensus 331 tq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSgg 403 (497)
T COG5265 331 TQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGG 403 (497)
T ss_pred HHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCc
Confidence 25679999999999987 99999998632 34555554433221 111 2467889999997554 49999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||||+|||+++++|++|++||.||.||+.+...|...|++++ .|+|.+++.|..+. + --+|+|++|++|++++.|.
T Consensus 404 ekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 404 EKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGT 480 (497)
T ss_pred hHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCc
Confidence 9999999999999999999999999999999999999999987 58999999999863 3 4589999999999999999
Q ss_pred hhhHHH
Q 046969 265 AKLAVE 270 (697)
Q Consensus 265 ~~~~~~ 270 (697)
-++.+.
T Consensus 481 h~~ll~ 486 (497)
T COG5265 481 HEELLA 486 (497)
T ss_pred HHHHHH
Confidence 886654
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.9e-32 Score=319.52 Aligned_cols=205 Identities=21% Similarity=0.343 Sum_probs=162.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.|+++||++.+. .+.+|+|+||.+++|++++|+|||||||||||++|+|..+++ +|+|.++|. .
T Consensus 3 ~l~i~~ls~~~~-------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~ 66 (635)
T PRK11147 3 LISIHGAWLSFS-------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------L 66 (635)
T ss_pred EEEEeeEEEEeC-------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------C
Confidence 589999999873 357999999999999999999999999999999999998874 899999873 2
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHH------------------------------hhcc--CCCCCCHHHHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYS------------------------------AHLR--LPSSMSKEDIKSHVDGTILE 162 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~------------------------------~~l~--~~~~~~~~~~~~~v~~~l~~ 162 (697)
.++|++|++......||.+++..+ ..+. .. .....+.+++++++++.
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQ 145 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHh
Confidence 367888765433334666554211 0000 00 00011234568889999
Q ss_pred cCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcH
Q 046969 163 LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSS 242 (697)
Q Consensus 163 lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~ 242 (697)
+|+.. ++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|++ .
T Consensus 146 lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~-~ 214 (635)
T PRK11147 146 LGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDR-S 214 (635)
T ss_pred CCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCH-H
Confidence 99963 5544 579999999999999999999999999999999999999999999987 35999999996 5
Q ss_pred HHHHhccceeeecCCeee-eecChhh
Q 046969 243 EVFALFDDLFLLSGGETV-YFGEAKL 267 (697)
Q Consensus 243 ~i~~l~D~v~lL~~G~iv-~~G~~~~ 267 (697)
.+.++||+++.|++|+++ |.|+.++
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 788999999999999997 5676653
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-32 Score=346.29 Aligned_cols=209 Identities=22% Similarity=0.368 Sum_probs=171.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++|+++.++. ..+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------
Confidence 5999999998742 2357999999999999999999999999999999999999874 89999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH--HHHHHcCC-CcccCccccCccCCCCCHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVD--GTILELGL-HDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++||+|++.+++ .||+|||.|+.. ..+++.++.++ ++.+.++. .+..+|.+|+ ....||||||||++|
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaL 771 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSL 771 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHH
Confidence 4899999998875 599999998632 12222222111 12233333 3445778876 456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA--RDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la--~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|||+..+|++++||||||+||+.++..+.+.+.+.. .+|+|+|++||++. ....+|+|++|++|++++.|+.++..
T Consensus 772 ARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 772 ARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 999999999999999999999999999999997642 35799999999984 34569999999999999999988764
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-32 Score=260.15 Aligned_cols=224 Identities=22% Similarity=0.321 Sum_probs=192.0
Q ss_pred eEEEEEEEEEecccc--ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--
Q 046969 35 FLVWENLFAVLPNFG--NNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~--~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-- 110 (697)
.|+++||++++.... .+.....+++.|||+++.|+.+||+|.||||||||.|+|+|..+|+ +|+|++||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCcccccc
Confidence 477889988765311 1223567899999999999999999999999999999999999985 999999999863
Q ss_pred ---cCCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHH
Q 046969 111 ---VDSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGG 184 (697)
Q Consensus 111 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 184 (697)
.+.+.|-+++||+ .+-|.+.+.+-|....++ ...++.+++.+++.+.++.+||- +.++- ++..||-|
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~ 153 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPG 153 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCch
Confidence 2246799999997 478888888888876554 45677888889999999999985 44544 45689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++||||+.+|++++.||...+||...+.++++..-++.++ |.+-|.++.+. ..+..+.|+|++|++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 999999999999999999999999999999999999999999875 99999999886 5788999999999999999999
Q ss_pred ChhhHH
Q 046969 264 EAKLAV 269 (697)
Q Consensus 264 ~~~~~~ 269 (697)
++.++.
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 988653
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-32 Score=260.78 Aligned_cols=151 Identities=39% Similarity=0.612 Sum_probs=135.3
Q ss_pred EEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 046969 38 WENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----D 112 (697)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~ 112 (697)
++|+++.++ .+.+++++|+.+++|++++|+||||||||||+++|+|.+++. +|+|.++|.+... .
T Consensus 2 ~~~~~~~~~-------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRYG-------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEeC-------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHH
Confidence 577877763 346999999999999999999999999999999999999874 8999999987532 1
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
.+.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 356888888 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
++++.+|++++|||||+|||..++..+.+.|++++++++|+++++|++ .++..+||+++++++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999887789999999997 57778899999999875
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=264.22 Aligned_cols=186 Identities=27% Similarity=0.397 Sum_probs=163.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD--- 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--- 112 (697)
++.+||+.+- ..+.++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|.++|.+++..
T Consensus 3 L~a~~L~~~R-------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCER-------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhcc-------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhh
Confidence 5566777652 4678999999999999999999999999999999999999985 99999999887532
Q ss_pred -CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 113 -SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 113 -~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
...+-|+-..+.+=+.|||.|||.|......+ .+ .+.+.+.++.+||....|.+++ .||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHH
Confidence 24577888888999999999999998876532 11 2346778899999999999886 799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSS 242 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~ 242 (697)
||-+++.+++.+||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999988899999999999963
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.8e-32 Score=314.06 Aligned_cols=180 Identities=29% Similarity=0.430 Sum_probs=153.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCc-------CCCeE
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVL-----------FNGKKTRV-------DSGVL 116 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~-------~~~~i 116 (697)
+.+|++++ .+++||+++|+||||||||||||+|+|.++|+ +|+|. ++|+++.. ....+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 46899999 99999999999999999999999999999885 89997 89987521 11235
Q ss_pred EEEecCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHH
Q 046969 117 AYVTQENVLLGT---LTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIAL 193 (697)
Q Consensus 117 ~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~ 193 (697)
++.+|.....+. .||+|++... +..+.++++++.+||.+..|+.++ .|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 666664433332 2999998631 123568889999999988888775 79999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 194 EILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
+|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|.+|
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999988 99999999997 5788999999999864
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.98 E-value=5.3e-32 Score=339.94 Aligned_cols=193 Identities=22% Similarity=0.388 Sum_probs=157.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 56999999999999999999999999999999999999874 89999988 38999999999886 99999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHH--HHHHHcC-CCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVD--GTILELG-LHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGL 211 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgL 211 (697)
|.|+... ..+..++.++ .+.+.+. +.+..+|.+|+ ....|||||||||+||||++.+|++++|||||+||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9987421 1111111111 1222222 22334567775 35789999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 212 DSASAFFVIQT-LRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 212 D~~~a~~i~~~-L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
|+.++..+++. ++++. +|+|+|++||++. . ...||++++|++|+++..|+.++..
T Consensus 580 D~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~-~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLM-SNKTRILVTSKLE-H-LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-H-HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999974 66664 4899999999984 3 4569999999999999999987764
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.9e-32 Score=254.44 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=169.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---cCc
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK---TRV 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~---~~~ 111 (697)
.|+.++|++.+. ...--+||||.+.|||+++|+|.|||||||||+||++++.|+ +|+|.+.-+. ...
T Consensus 6 LL~V~~lsk~Yg-------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLYG-------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhhC-------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhH
Confidence 577888887663 344579999999999999999999999999999999999985 8999886533 211
Q ss_pred -----------CCCeEEEEecCCC--CCC----CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCcccc
Q 046969 112 -----------DSGVLAYVTQENV--LLG----TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIG 174 (697)
Q Consensus 112 -----------~~~~i~yv~Q~~~--l~~----~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg 174 (697)
.+...|+|.|++. +-. .-.+.|-++-... ..-..+++...++++++.++.. .+
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~------RHYG~iR~~a~~WL~~VEI~~~---Ri- 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA------RHYGNIRAEAQDWLEEVEIDLD---RI- 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh------hhhhhHHHHHHHHHHhcccCcc---cc-
Confidence 1245899999863 322 2234444332111 1123456677888998877532 12
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceee
Q 046969 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 175 ~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
+..++.+|||++||+.|||-|++.|++.|+||||-|||..-+..++++++.+..+ |..++++|||. ..+.-++||.++
T Consensus 146 DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmv 224 (258)
T COG4107 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMV 224 (258)
T ss_pred cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhccee
Confidence 2356899999999999999999999999999999999999999999999999976 99999999996 455668999999
Q ss_pred ecCCeeeeecChhhHHH
Q 046969 254 LSGGETVYFGEAKLAVE 270 (697)
Q Consensus 254 L~~G~iv~~G~~~~~~~ 270 (697)
|++|++++.|-++.+++
T Consensus 225 mk~g~vve~GLTDrvLD 241 (258)
T COG4107 225 MKQGQVVESGLTDRVLD 241 (258)
T ss_pred ecCCCEecccccccccc
Confidence 99999999998876543
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=6.4e-31 Score=296.29 Aligned_cols=207 Identities=29% Similarity=0.411 Sum_probs=171.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..++.+|+++.+ +.+.+++|+|+.+.+|+.+||+|+||||||||||+|+|...++ +|+|...+.
T Consensus 2 ~~i~~~~ls~~~-------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------ 65 (530)
T COG0488 2 SMITLENLSLAY-------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------ 65 (530)
T ss_pred ceEEEeeeEEee-------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------
Confidence 358899999887 3688999999999999999999999999999999999999875 899987642
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCC
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLR-------------LPSS--------------MSKEDIKSHVDGTILELGLH 166 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 166 (697)
-.++|++|+..+.+..||.+.+.-+..-. ++.. ...-+.+.+++.++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 35999999999999999999886543210 0000 00011235677888889988
Q ss_pred cccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH
Q 046969 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA 246 (697)
Q Consensus 167 ~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~ 246 (697)
+. ++.++ .||||||+||++|++|+.+|++|+|||||++||..+..-+-+.|++. .| |||++||| +..+-+
T Consensus 146 ~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 77 77765 79999999999999999999999999999999999999999999864 46 99999999 788999
Q ss_pred hccceeeecCCeee-eecChh
Q 046969 247 LFDDLFLLSGGETV-YFGEAK 266 (697)
Q Consensus 247 l~D~v~lL~~G~iv-~~G~~~ 266 (697)
.|++|+-++.|++. |.|.-+
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HhhheEEecCCceeEecCCHH
Confidence 99999999999765 556543
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.6e-30 Score=326.91 Aligned_cols=193 Identities=28% Similarity=0.395 Sum_probs=153.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++.+|+|+|+.+++||+++|+|||||||||||++|+|.+++. +|+|.++ +.++||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 456999999999999999999999999999999999999874 8999874 46999999998875 59999
Q ss_pred HHHHHhhccCCCCCCHHHHH-----HHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 046969 134 TITYSAHLRLPSSMSKEDIK-----SHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPS 208 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPt 208 (697)
|+.|... ...+... ..+++.++.+ .+..++.+|. ....|||||||||+|||||+.+|++++|||||
T Consensus 740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 740 NILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 9998521 1111111 1123333333 1123445554 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 209 SGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 209 sgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
++||+.++..+++.+.....+|+|+|++||++. ..+.+|++++|++|++++.|+.++..
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999988754322335899999999974 34789999999999999999987653
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=9.4e-30 Score=260.40 Aligned_cols=189 Identities=27% Similarity=0.347 Sum_probs=136.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-------------CEecC---cCCCeE
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLL-DSLAGRLSRHVIMTGNVLFN-------------GKKTR---VDSGVL 116 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL-~~LaG~~~~~~~~~G~I~~n-------------G~~~~---~~~~~i 116 (697)
+.++|+++|+++++||+++|+||||||||||+ ..+.. .|++.+. ..... ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 46799999999999999999999999999996 44431 1221110 00000 111123
Q ss_pred EEEecCCC--CCCCCCHH---HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHH
Q 046969 117 AYVTQENV--LLGTLTVR---ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 117 ~yv~Q~~~--l~~~lTV~---E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvs 190 (697)
++..|++. +.+..+|. |...+...+. ..++..++ .+.++.++|.+ ..++.+ ..|||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHH
Confidence 44444432 23444544 3333322111 11222233 46789999976 466654 579999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeee
Q 046969 191 IALEILTKP--QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYF 262 (697)
Q Consensus 191 Ia~~Ll~~P--~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~ 262 (697)
||++|+.+| ++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ++||++++| ++|+++++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 599999999999999999999999999888999999999974 44 699999999 99999987
Q ss_pred c
Q 046969 263 G 263 (697)
Q Consensus 263 G 263 (697)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2e-30 Score=303.99 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=150.1
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR- 110 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~- 110 (697)
....|+++|+++.+. .+.+|+|+|+++++|+.+||+|||||||||||++|+|+...+...+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y~-------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 174 AIKDIHMENFSISVG-------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred CceeEEEceEEEEeC-------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 445799999999873 356999999999999999999999999999999999974211122455543322110
Q ss_pred ----c-------C-------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHH-------------------HHH
Q 046969 111 ----V-------D-------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKE-------------------DIK 153 (697)
Q Consensus 111 ----~-------~-------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-------------------~~~ 153 (697)
. . ...++|++|++.+... ++.++.... . ....+.+ +.+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-N---KDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-c---ccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 0 0 0012333332211100 111110000 0 0001112 223
Q ss_pred HHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 046969 154 SHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRT 232 (697)
Q Consensus 154 ~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~t 232 (697)
+++.+++..+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566677777775 3455655 479999999999999999999999999999999999999999999886 689
Q ss_pred EEEEeCCCcHHHHHhccceeeecCCeee-eecChhh
Q 046969 233 VISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKL 267 (697)
Q Consensus 233 vi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~~ 267 (697)
||+++|+. ..+.++||++++|++|+++ |.|+.+.
T Consensus 394 viivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 394 FIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99999996 5788899999999999996 6776553
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.7e-29 Score=304.58 Aligned_cols=208 Identities=27% Similarity=0.401 Sum_probs=175.3
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++++|.+..-.. ....+.|+|||+++++|+++||+||-|||||+||.+|.|.++. .+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs----- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDS----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS----- 583 (1381)
T ss_pred CceEEEeeeeEecCC----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe-----
Confidence 345888999887543 1244589999999999999999999999999999999999986 5999999985
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------cccCccccCccCCCCCHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-------DCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGe 185 (697)
++||+|++-++.. ||||||.|+..+ . +++.+++++...|+ +.-.|.||+.+ -.|||||
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhH
Confidence 8999999999887 999999997543 2 23445555555443 45577888744 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||+++|||+-.|.+|++||.|.|++|++++..|.+..-+-.-+++|+|++|||. +....+|.|++|++|+++..|+.
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCH
Confidence 9999999999999999999999999999999998866554444689999999985 57889999999999999999999
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
++..
T Consensus 727 ~el~ 730 (1381)
T KOG0054|consen 727 EELL 730 (1381)
T ss_pred HHHH
Confidence 9876
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=6.8e-30 Score=240.08 Aligned_cols=132 Identities=43% Similarity=0.702 Sum_probs=118.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CCCeEEEEecCCCCCCCCCHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----DSGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 132 (697)
|+|+|+++++||+++|+|+||||||||+++|+|..++. +|+|.+||.++.. .++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999874 9999999998753 246799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS 209 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts 209 (697)
|+ ...++++++++.+++.+..++.++. ....|||||||||+||++|+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 2245588899999999988888865 337899999999999999999999999999996
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=7.7e-29 Score=257.58 Aligned_cols=196 Identities=23% Similarity=0.316 Sum_probs=153.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--CCcee------EEEECCEecCcC-C-
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA-----GRLS-----RH--VIMTG------NVLFNGKKTRVD-S- 113 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La-----G~~~-----~~--~~~~G------~I~~nG~~~~~~-~- 113 (697)
...-|+||+..++.|++++|.|+||||||||++.+. ..+. +. ....| -|.++..++... +
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 345699999999999999999999999999998552 1110 10 01111 366776654210 0
Q ss_pred -----------------------------CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC
Q 046969 114 -----------------------------GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG 164 (697)
Q Consensus 114 -----------------------------~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg 164 (697)
..+.|..++...+..+||.|++.|...+. + .+++.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--------~-~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--------K-IARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--------h-HHHHHHHHHHcC
Confidence 01446666666678899999999986542 1 235677899999
Q ss_pred CCc-ccCccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 165 LHD-CADTVIGNWHLRGISGGEKKRLSIALEILTK---PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 165 L~~-~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~---P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
|.+ ..++.+ ..||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++
T Consensus 158 L~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 158 LGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred CchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 986 455544 57999999999999999996 799999999999999999999999999998899999999997
Q ss_pred cHHHHHhccceeee------cCCeeeeecCh
Q 046969 241 SSEVFALFDDLFLL------SGGETVYFGEA 265 (697)
Q Consensus 241 ~~~i~~l~D~v~lL------~~G~iv~~G~~ 265 (697)
. .+ +.+|+++.| ++|++++.|++
T Consensus 233 ~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 D-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 44 679999999 89999999874
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=238.08 Aligned_cols=212 Identities=23% Similarity=0.322 Sum_probs=171.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--cC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK--TR- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~--~~- 110 (697)
..|..+|+++++.--..+--.-++|+|+|+.++.||++++=||||+||||||++|-|.+.++ +|+|++.-.. ++
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhh
Confidence 35778888876642111112457999999999999999999999999999999999998875 9999885432 11
Q ss_pred ----------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCC
Q 046969 111 ----------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 111 ----------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
.+++.+|||.|--...|.....|-.+-.+.- ...+.+..++++..++..+++.+..=.+ .+..
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1246799999988888887776666544432 3567888888999999999997644332 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
+||||+|||.|||.++.+-+||+|||||+.||..++..+++.|++-+..|..+|=+-||- +.-...+||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999999888899999999993 344568999998863
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.8e-29 Score=301.55 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.+.. ....+|+|||++|+|||.+||+|..|||||||.++|-++..+. +|+|.+||.++..
T Consensus 1138 ~I~f~~~~~RYrp-----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRP-----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGL 1209 (1381)
T ss_pred eEEEEEeEEEeCC-----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccH
Confidence 6999999998853 3567999999999999999999999999999999999998874 8999999999742
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH-----HHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVD-----GTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
-|++++.+||||.+|.. |||+||.=. ...+++++.+..| +.++ .+....|+.|.+ ....+|-|
T Consensus 1210 ~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~e-gG~N~SvG 1279 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DEYSDDEIWEALERCQLKDVVS--SLPGGLDSEVSE-GGENFSVG 1279 (1381)
T ss_pred HHHHhcCeeeCCCCceecC-ccccccCcc------cccCHHHHHHHHHHhChHHHHh--hCCcCCCceecC-CCccCChH
Confidence 26789999999999998 999998632 2345666544332 2233 344457777764 45689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||-+++||||+++++||+|||.|++.|+.|-..|.++||+- =+++|||.+.|+... +. -+|||++|++|+++++|+
T Consensus 1280 QRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1280 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred HHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCC
Confidence 999999999999999999999999999999999999999983 347999999999863 44 489999999999999999
Q ss_pred hhhHHH
Q 046969 265 AKLAVE 270 (697)
Q Consensus 265 ~~~~~~ 270 (697)
|.+.++
T Consensus 1357 P~~Ll~ 1362 (1381)
T KOG0054|consen 1357 PAELLS 1362 (1381)
T ss_pred hHHHHh
Confidence 987654
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=9e-28 Score=270.86 Aligned_cols=203 Identities=29% Similarity=0.349 Sum_probs=167.8
Q ss_pred CccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 046969 31 ARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 110 (697)
.....++++|+++.+. +.+.+++++|+.+++|+.+||+||||+|||||||+|+|...+. +|+|.+.-.
T Consensus 317 ~g~~vl~~~~~~~~y~------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~--- 384 (530)
T COG0488 317 LGKLVLEFENVSKGYD------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET--- 384 (530)
T ss_pred CCCeeEEEeccccccC------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc---
Confidence 3456899999999874 2378999999999999999999999999999999999998874 899987432
Q ss_pred cCCCeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHH
Q 046969 111 VDSGVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 111 ~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqR 188 (697)
-.+||..|+. .+.+..|+.|++.-.. |. .. +..+...+..+++.. ...++| +.||||||.|
T Consensus 385 ---v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-~~----e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~R 447 (530)
T COG0488 385 ---VKIGYFDQHRDELDPDKTVLEELSEGF----PD-GD----EQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKAR 447 (530)
T ss_pred ---eEEEEEEehhhhcCccCcHHHHHHhhC----cc-cc----HHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHH
Confidence 3589999986 4558889999987432 11 11 456778899999963 345555 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee-eecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~~ 267 (697)
|.+|+.++.+|.+|+|||||+.||..+...+.+.|... .-|||+++||. ..+-+++++++.+.+ ++. +.|.-++
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~ 522 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYED 522 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence 99999999999999999999999999999999999886 45999999995 689999999999998 544 4476554
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=6e-29 Score=235.54 Aligned_cols=194 Identities=28% Similarity=0.409 Sum_probs=168.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----CCeEEEEecCCCCCCCCCHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-----SGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~i~yv~Q~~~l~~~lTV~ 132 (697)
|-.+|+.+..||++-++|||||||||||..++|+.+. +|+|.++|++.... .+.-+|..|+..-...|.|.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 6789999999999999999999999999999999875 89999999986421 24567998887665667899
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh-----CC--CEEEEe
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT-----KP--QLLFLD 205 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~-----~P--~lllLD 205 (697)
.+|.+. .+++++...++++...++|.+...+.+ ..|||||-|||-+|...+. || ++|++|
T Consensus 91 ~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH--------QPDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 888753 234666777888999999998887765 5899999999999987763 44 799999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 206 EPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 206 EPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||.++||.+....+-+.|.+++.+|++||++.||.. ...+.+|++.+|+.|++...|.+++++
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999999999999999999975 788999999999999999999998865
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=4.7e-28 Score=242.65 Aligned_cols=164 Identities=25% Similarity=0.319 Sum_probs=129.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEecCc--CCCeEEEEecCCCCCCCCC
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH------VIMTGNVLFNGKKTRV--DSGVLAYVTQENVLLGTLT 130 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~------~~~~G~I~~nG~~~~~--~~~~i~yv~Q~~~l~~~lT 130 (697)
+++++.+++| +++|+|||||||||||++|+|..++. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999987542 1224578888876432 236799999998766
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 046969 131 VRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL----TKPQLLFLDE 206 (697)
Q Consensus 131 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll----~~P~lllLDE 206 (697)
|. .. . .++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~-----~----~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II-----S----QGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE-----e----hhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 0 2345556655 44455544 579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 207 PSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 207 PtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
||+|||+.....+.+.|+++++ +.|||+++|++. . .+.+|+++.+.
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~ 189 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVT 189 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEE
Confidence 9999999999999999999866 689999999974 3 57899999996
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.6e-27 Score=259.31 Aligned_cols=212 Identities=23% Similarity=0.409 Sum_probs=177.9
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
..++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++....
T Consensus 262 ~~l~v~~l~~~-----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~s 327 (500)
T COG1129 262 PVLEVRNLSGG-----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRS 327 (500)
T ss_pred cEEEEecCCCC-----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCC
Confidence 45666666531 257999999999999999999999999999999997665 389999999986532
Q ss_pred -----CCeEEEEecC---CCCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCC
Q 046969 113 -----SGVLAYVTQE---NVLLGTLTVRETITYSAHLRLPS--SMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGI 181 (697)
Q Consensus 113 -----~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 181 (697)
+..++|||.| +-++..++|+||+.++...+... -.+....++.+++.++.+++.. ..+..+ ..|
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~L 402 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTL 402 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcC
Confidence 2469999987 46899999999999983322211 2455566778899999999853 344544 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||.+|||.||+.|.++|++|+|||||.|.|.-+..+|.+.|+++|++|++||+++.+. +|+..+||||++|++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 79999999999999999987
Q ss_pred ecCh
Q 046969 262 FGEA 265 (697)
Q Consensus 262 ~G~~ 265 (697)
.=+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5443
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.4e-26 Score=238.95 Aligned_cols=184 Identities=16% Similarity=0.288 Sum_probs=131.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC----------------CCCCCcee--------EEEECCEe
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL----------------SRHVIMTG--------NVLFNGKK 108 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~----------------~~~~~~~G--------~I~~nG~~ 108 (697)
..+.++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCC
Confidence 3567888887 7899999999999999999998432 221 23 55555532
Q ss_pred c----C----cCCCeEEEEecCCCCCC-CCCHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHHcCCCcccCccccCccC
Q 046969 109 T----R----VDSGVLAYVTQENVLLG-TLTVRETITYSAHLRLPSSMSKE-DIKSHVDGTILELGLHDCADTVIGNWHL 178 (697)
Q Consensus 109 ~----~----~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 178 (697)
. . ..++.++|++|+..+++ ..|..|...+...+.++...... ....++. +.+++.+..+.. +
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~~-----~ 156 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQE-----M 156 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhcccccccc-----c
Confidence 1 0 01345889988887776 46777766665554332110000 0011222 234454444443 3
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 179 RGISGGEKKRLSIALEILT----KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~----~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.|||+++|++ ++.++||++++|
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l 233 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGV 233 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEE
Confidence 5799999999999999974 5899999999999999999999999999866 78899888885 578999999999
Q ss_pred c
Q 046969 255 S 255 (697)
Q Consensus 255 ~ 255 (697)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 6
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.4e-27 Score=241.98 Aligned_cols=177 Identities=19% Similarity=0.188 Sum_probs=135.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-cCCCeEEEEecCCCCCCCCCH
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-VDSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~~~~~i~yv~Q~~~l~~~lTV 131 (697)
..+.+|+++++ ++++|+||||||||||+++|.-. +|.+.. ...+.+++++|+..+++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 35678999987 89999999999999999999722 222211 112468899999989999999
Q ss_pred HHHHHHHhhccCC-----CCCCHHHHHH--HHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh----CCC
Q 046969 132 RETITYSAHLRLP-----SSMSKEDIKS--HVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT----KPQ 200 (697)
Q Consensus 132 ~E~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~----~P~ 200 (697)
.|.+.+......- .....++... ..+++++.++|.+..++.+ +.+|+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 9988776543210 0111111110 1245556778887777765 4799999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 201 LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 201 lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
++++||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++.++||++++|.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~ 203 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIY 203 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEE
Confidence 9999999999999999999999999854 67888888995 6889999999996
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=252.47 Aligned_cols=197 Identities=30% Similarity=0.424 Sum_probs=161.8
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++++||++..+ ..+..|++.++.+++||-+.|.||||||||||+|+|+|+-+-+ +|+|..- .
T Consensus 390 ~~~i~~~nl~l~~p------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~ 454 (604)
T COG4178 390 DHGITLENLSLRTP------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------A 454 (604)
T ss_pred cceeEEeeeeEECC------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------C
Confidence 45799999999865 3458999999999999999999999999999999999999875 6777553 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccC-ccCCCCCHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN-WHLRGISGGEKKRLSI 191 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~-~~~~~LSGGerqRvsI 191 (697)
...+-|+||.+.+... |.||-|.|.... ...++ +.+.++|.++||.+..++.=+. ..-+.||+||||||++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAA---PDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCC---CCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 2457899999998877 999999885322 12333 3466788899998877664321 1246799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|+|. +..+.++.+-+.
T Consensus 527 ARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999998843 3799999999974 667778766664
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.5e-26 Score=237.66 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=136.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-ec-C------cCCCeEEEEecCC---------CCCCCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK-KT-R------VDSGVLAYVTQEN---------VLLGTLT 130 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~-~~-~------~~~~~i~yv~Q~~---------~l~~~lT 130 (697)
..+++|+|||||||||||++|++.+.+. ..|++...|. +. . .....+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998653 2467777665 21 1 1234789999985 3567889
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--------------------cccCccccCccCCCCCHHHHHHHH
Q 046969 131 VRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH--------------------DCADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 131 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~d~~vg~~~~~~LSGGerqRvs 190 (697)
|.+++......+.... .++...+.+.++++.+|+. +..++ .+..||||||||++
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHH
Confidence 9998866432211000 1223346788899999986 22233 34689999999999
Q ss_pred HHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 191 IALEIL----TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 191 Ia~~Ll----~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
||++|+ .+|+++++||||+|||+.+...+.+.|++++ +|.|||+++|++ ++.+.+|+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999998 5789999999999999999999999999985 489999999994 6888999999875
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=235.05 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=188.6
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-C
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT-R 110 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~-~ 110 (697)
....|+++||++.-. .....+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~~~------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~ 324 (501)
T COG3845 254 GEVVLEVEDLSVKDR------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLG 324 (501)
T ss_pred CCeEEEEeeeEeecC------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccc
Confidence 356899999998642 1256799999999999999999999999999999999998764 69999999985 1
Q ss_pred ---c---CCCeEEEEecCC---CCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCCccc-CccccCc
Q 046969 111 ---V---DSGVLAYVTQEN---VLLGTLTVRETITYSAHLRLP----SSMSKEDIKSHVDGTILELGLHDCA-DTVIGNW 176 (697)
Q Consensus 111 ---~---~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~ 176 (697)
. ....++|||+|. .+.+.+|+.||+.+...-+-| .-....+.++.+.+++++++...+. +.
T Consensus 325 ~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----- 399 (501)
T COG3845 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----- 399 (501)
T ss_pred cCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----
Confidence 1 134699999985 578899999999887653211 1245677888999999999987332 22
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
..+.||||.+||+-+||+|..+|++|++.+||.|||..++..|.+.|.+.++.|+.|++++.+. +|+++++|||.+|.+
T Consensus 400 ~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~ 478 (501)
T COG3845 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYE 478 (501)
T ss_pred chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeC
Confidence 3468999999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred CeeeeecChhh
Q 046969 257 GETVYFGEAKL 267 (697)
Q Consensus 257 G~iv~~G~~~~ 267 (697)
|+++...++++
T Consensus 479 Gri~~~~~~~~ 489 (501)
T COG3845 479 GRIVGIVPPEE 489 (501)
T ss_pred Cceeccccccc
Confidence 99998887764
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=1.6e-24 Score=268.01 Aligned_cols=137 Identities=25% Similarity=0.357 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHh---hCCC
Q 046969 125 LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEIL---TKPQ 200 (697)
Q Consensus 125 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll---~~P~ 200 (697)
.+...||.|+|.+...-........++..+++ ++++.+||.+. .++.+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 46678999999887652211112234555666 47889999875 66655 579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec------CCeeeeecChhhHH
Q 046969 201 LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS------GGETVYFGEAKLAV 269 (697)
Q Consensus 201 lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~------~G~iv~~G~~~~~~ 269 (697)
+|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999999988999999999974 55 8999999995 78999999998754
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.92 E-value=1.8e-25 Score=226.68 Aligned_cols=178 Identities=20% Similarity=0.163 Sum_probs=124.7
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-e-c--CcCCCeEEEEecCCCCCCCCCHHH
Q 046969 59 QGLYGYAE-PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK-K-T--RVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 59 ~~vs~~i~-~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~-~-~--~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++++|... +|++++|+|||||||||||++|++.+-.. ..+....+.. . . ......+++++|++.... ++.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 55666543 58999999999999999999999654211 1233332211 0 1 122356899998863211 1211
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh----------CCCEEE
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT----------KPQLLF 203 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~----------~P~lll 203 (697)
.. ..+.++..+.+ .+...++.+..++.+ ..||||||||++||++|+. +|++++
T Consensus 94 ~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 94 SR----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred ec----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 11 23333322221 123333445555544 5799999999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 204 LDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 204 LDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
|||||+|||+.+...+.+.|++++++|.|||+++|++ ..+...+|+++++++|.
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999999999999999999999987799999999997 56788999999999774
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=3.1e-25 Score=223.57 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=125.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEecC--cCCCeEEEEecCC-----CCCCC
Q 046969 60 GLYGYAEPGRIMAIMGPSGSGKSTLLDSLA----GRLSRHVIMTGNVLFNGKKTR--VDSGVLAYVTQEN-----VLLGT 128 (697)
Q Consensus 60 ~vs~~i~~Gei~aI~GpsGsGKSTLL~~La----G~~~~~~~~~G~I~~nG~~~~--~~~~~i~yv~Q~~-----~l~~~ 128 (697)
..++.+.+| +++|+|||||||||||++|. |..+++ .|.+..+...+. .....+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 344567788 99999999999999999995 877653 455441111111 2245789999987 44555
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH------HHHHHHHhhCCCEE
Q 046969 129 LTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR------LSIALEILTKPQLL 202 (697)
Q Consensus 129 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR------vsIa~~Ll~~P~ll 202 (697)
+|+.|++.+. ..++ +++.+ +. .++.||+||||| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~---------~~~~----~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFC---------HQGE----SNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeee---------chHH----HHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 6888888652 1122 22222 22 346899999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeec-CC
Q 046969 203 FLDEPSSGLDSASAF-FVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLS-GG 257 (697)
Q Consensus 203 lLDEPtsgLD~~~a~-~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~-~G 257 (697)
++||||++||+.++. .+.+.|++++++ |.|||+++|++. ..+.+|+++.|. +|
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 999999999999999 999999999876 899999999973 457899999996 44
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=1.5e-23 Score=249.97 Aligned_cols=125 Identities=26% Similarity=0.400 Sum_probs=106.9
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 046969 129 LTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSIALEILTKP---QLLFL 204 (697)
Q Consensus 129 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P---~lllL 204 (697)
+||.|++.|...+. +. ....+.++.+||.. ..++.+ ..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~--------~i-~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch--------hh-hHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 79999999976542 11 23457889999976 456654 579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHH
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAV 269 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~ 269 (697)
||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| .+|++++.|++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999888999999999973 44 689999999 799999999987653
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.5e-24 Score=226.16 Aligned_cols=204 Identities=23% Similarity=0.303 Sum_probs=160.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
-.++++|+.+.+.. ..-=+..||.+++.||++-|+|.||||||||++.|.|+..|. +|+|++||++++..
T Consensus 321 ~~lelrnvrfay~~------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQD------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQ 391 (546)
T ss_pred cceeeeeeeeccCc------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCC
Confidence 46889999887642 223478999999999999999999999999999999999985 99999999997522
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
++..+-|+-|-.+|+.+- .++... ..+.++.+++.+.|.+...-.-|+-..-.||.|||||
T Consensus 392 ledYR~LfSavFsDyhLF~~ll------------~~e~~a---s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL------------GPEGKA---SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh------------CCccCC---ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 334555666666666522 122211 1244667777777765443333333446799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRN-IARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~-la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
+++-.||+-+-+|+++||=.+.-||.-++.+.+.+-- ++++|+||+.++||- .-|..+||++.+++|++++.-
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999999877665 455799999999994 579999999999999998754
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1e-22 Score=242.41 Aligned_cols=125 Identities=27% Similarity=0.373 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSIALEILT---KPQLLF 203 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~---~P~lll 203 (697)
.+||.|.+.|...+. . . ....++++.+||.. ..++.+ +.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~-----i-~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S-----I-SRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c-----h-hHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888888876542 1 1 13456788899975 345544 5799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhH
Q 046969 204 LDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLA 268 (697)
Q Consensus 204 LDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~ 268 (697)
|||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| .+|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999974 44 679999999 79999999998753
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=7.9e-23 Score=222.60 Aligned_cols=215 Identities=22% Similarity=0.324 Sum_probs=145.0
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
.+..+.++|+++.. ..+.+++|+++++.+|+-++|+|+|||||||+|++|+|+..|. ..+=.++.-.+....
T Consensus 72 ~s~dvk~~sls~s~-------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~p 143 (614)
T KOG0927|consen 72 ISRDVKIESLSLSF-------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEP 143 (614)
T ss_pred ccccceeeeeeecc-------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCC
Confidence 34568888888876 3578999999999999999999999999999999999998763 111122222221110
Q ss_pred C-CCeEEEEecCCCCCCCCCHHHHHHHHhh-ccC----------------CCCCCHHHHHHHHHHHHHHcCC-CcccCcc
Q 046969 112 D-SGVLAYVTQENVLLGTLTVRETITYSAH-LRL----------------PSSMSKEDIKSHVDGTILELGL-HDCADTV 172 (697)
Q Consensus 112 ~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~----------------~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~ 172 (697)
. .+.+-+|.+ +.-..+.-+++-+. +.. ...+..+..+.++-+++..+|. .+..++.
T Consensus 144 s~~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~ 218 (614)
T KOG0927|consen 144 SEKQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK 218 (614)
T ss_pred chHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH
Confidence 0 000101110 00011111111110 000 0012223344455666666664 4555665
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcccee
Q 046969 173 IGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLF 252 (697)
Q Consensus 173 vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~ 252 (697)
+ .++|||+|.|+++||+|+.+|++|+|||||+|||..+..-+-+.|.+.-+ .++++++|. .+.+-..|.+|+
T Consensus 219 ~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii 290 (614)
T KOG0927|consen 219 V-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNII 290 (614)
T ss_pred h-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhh
Confidence 4 57999999999999999999999999999999999999988888876522 289999998 467889999999
Q ss_pred eecCCe-eeeecChhh
Q 046969 253 LLSGGE-TVYFGEAKL 267 (697)
Q Consensus 253 lL~~G~-iv~~G~~~~ 267 (697)
-|.+++ +.|.|+-+.
T Consensus 291 ~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQ 306 (614)
T ss_pred eecccceeeecCCHHH
Confidence 999999 556677653
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=3.1e-22 Score=213.81 Aligned_cols=190 Identities=24% Similarity=0.321 Sum_probs=152.2
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++|.++++++.. --|+-=.|.+..||+++++||||-||||+.++|||.++|+ +|+ ..+
T Consensus 340 ~~lv~y~~~~k~~g~--------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~---- 400 (591)
T COG1245 340 DTLVEYPDLKKTYGD--------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED---- 400 (591)
T ss_pred ceeeecchheeecCc--------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc----
Confidence 346788888877642 1355567889999999999999999999999999999985 675 111
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
-.++|=||--.--...||++.|.-...-+...+ -...++++-|.|++..|+.+. +|||||.|||+||
T Consensus 401 -~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIa 467 (591)
T COG1245 401 -LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIA 467 (591)
T ss_pred -ceEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHH
Confidence 247788886444356699998876544321111 123457778999999998774 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeec
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
.+|..++++++||||++-||+..+..+.+.|++++.+ ++|.+++-||.. .+--+.||+++.+
T Consensus 468 a~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 468 AALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999999999999999999999999999999974 899999999974 5667899999885
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.5e-22 Score=203.07 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=121.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec------CcCCCeEEEEecCCCCCCCCCH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT------RVDSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~------~~~~~~i~yv~Q~~~l~~~lTV 131 (697)
++++++.+.+| +.+|+|||||||||||.+|...+.... . ....|... ......+.+++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~--~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA--S--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc--c--cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46778888887 889999999999999999974332210 0 00112210 1113457788887665541
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCC
Q 046969 132 RETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI----LTKPQLLFLDEP 207 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L----l~~P~lllLDEP 207 (697)
+ ... ..++.++++++. .+..++.+ +.||+|||||++||+++ +.+|++++||||
T Consensus 84 ------------~--~~~-~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 ------------P--LCV-LSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred ------------c--CCH-HHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 0 111 113456666665 55566655 57999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 208 SSGLDSASAFFVIQTLRNIARD---GRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~~---g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
|+|||..+...+.+.|++++++ +.|||+++|++. ++.+ +|+|-+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 9999999999999999998753 368999999974 5655 49999998654
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=9.9e-23 Score=198.32 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=176.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc-eeEEEECCEec----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIM-TGNVLFNGKKT---- 109 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~-~G~I~~nG~~~---- 109 (697)
.|.++||+.++.. .. +..++++++|+++..||+-+++|.||||||-..|+|.|..+.+..+ .....+++.+.
T Consensus 3 LLDIrnL~IE~~T-sq--G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 3 LLDIRNLTIEFKT-SQ--GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred cccccceEEEEec-CC--CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 3677899998864 22 3467999999999999999999999999999999999987654322 23345555542
Q ss_pred -CcC----CCeEEEEecCCC--CCCCCCHHHHHHHHhhccCCCC-C--CHHHHHHHHHHHHHHcCCCcccCccccCccCC
Q 046969 110 -RVD----SGVLAYVTQENV--LLGTLTVRETITYSAHLRLPSS-M--SKEDIKSHVDGTILELGLHDCADTVIGNWHLR 179 (697)
Q Consensus 110 -~~~----~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 179 (697)
+.+ .+.+++++|++. |-|.-+|...|.-+.....-+. . .-.-++.++-+++..+|+.+..|-.- .++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~--SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR--SYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH--hCcc
Confidence 111 245889999984 5555555444332211110000 0 01124566778999999998777543 3677
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.+|.++|.++.. +|.||++++||. ..+-+.||++-+|.=|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999986 589999999996 57899999999999999
Q ss_pred eeeecChhhHHH
Q 046969 259 TVYFGEAKLAVE 270 (697)
Q Consensus 259 iv~~G~~~~~~~ 270 (697)
.++.++.++.++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999887654
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=7.7e-23 Score=222.68 Aligned_cols=212 Identities=20% Similarity=0.280 Sum_probs=161.6
Q ss_pred cccccccC-ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE
Q 046969 24 ISFDRAAA-RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV 102 (697)
Q Consensus 24 ~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I 102 (697)
+.+.+... ++-.+.++|+++.+.. +-.+.++++|-+.+++-+|++||||+|||||||++.|.+.|. .|.|
T Consensus 377 ~~f~~vg~~p~pvi~~~nv~F~y~~------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~v 447 (614)
T KOG0927|consen 377 FRFPEVGKIPPPVIMVQNVSFGYSD------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMV 447 (614)
T ss_pred EEcccccCCCCCeEEEeccccCCCC------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccc
Confidence 34544444 4457889999886642 237999999999999999999999999999999999999884 7887
Q ss_pred EECCEecCcCCCeEEEEecC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCC
Q 046969 103 LFNGKKTRVDSGVLAYVTQE--NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 103 ~~nG~~~~~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
.-.-+ ..+++-.|+ +.+.-..++-|++.=.. +++...+.+..++..+||....++. ..+.
T Consensus 448 s~~~H------~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~ 509 (614)
T KOG0927|consen 448 SRHSH------NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQ 509 (614)
T ss_pred ccccc------ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhh
Confidence 64322 234455554 34445567777765321 1123345677889999998444332 3468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee-
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET- 259 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i- 259 (697)
||+|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.++ ..+||+++||- -.|-+.++++.+..+|.+
T Consensus 510 LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 510 LSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVT 585 (614)
T ss_pred cccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCcee
Confidence 9999999999999999999999999999999999999888888775 35899999996 478889999999987765
Q ss_pred eeecChh
Q 046969 260 VYFGEAK 266 (697)
Q Consensus 260 v~~G~~~ 266 (697)
.+.|...
T Consensus 586 ~~~G~i~ 592 (614)
T KOG0927|consen 586 KWDGDIE 592 (614)
T ss_pred ecCccHH
Confidence 4566543
No 391
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=7.5e-22 Score=216.40 Aligned_cols=204 Identities=23% Similarity=0.289 Sum_probs=159.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..+++++++..-|+ .+..+++|+|+.|+.|+-+.|+||||||||+||++|+|+.+.. +|.+.--.+. ..
T Consensus 432 n~i~~e~v~l~tPt-----~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~ 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GP 500 (659)
T ss_pred ceEEeeeeeecCCC-----CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CC
Confidence 57999999988664 2456889999999999999999999999999999999999863 7888643322 12
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccC------ccCCCCCHHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN------WHLRGISGGEKK 187 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSGGerq 187 (697)
+.+-||||.|.+--. |.||-+.|...---+ .++....+++.+.|+.++|.|..++.-|- +....||+||+|
T Consensus 501 ~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 558899999987666 999999886321111 11111234566778888887766554331 123579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
|++.||-+.++|++-+|||-||++|......+.+.++++ |.|.|-+.|.++ +.+.=|.++-|++
T Consensus 578 RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999998888774 899999999975 5666688888874
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.2e-22 Score=210.65 Aligned_cols=177 Identities=22% Similarity=0.273 Sum_probs=118.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------c-C--cCCCe--EEEEecCCCC-CCCCCHHHHHH
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-------T-R--VDSGV--LAYVTQENVL-LGTLTVRETIT 136 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-------~-~--~~~~~--i~yv~Q~~~l-~~~lTV~E~l~ 136 (697)
+++|+|||||||||||++|++.+.+. .|++..++.. . . ..... +.|..|++.. .-.-++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 99999999999999999999987542 4555443321 0 0 00122 3344443221 11111111100
Q ss_pred HHhhccCCC-CCCHHHHHHHHHHHHHHcCCCcccCcc---------ccCc--------cCCCCCHHHHHHHHHHHHHhhC
Q 046969 137 YSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCADTV---------IGNW--------HLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 137 ~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~---------vg~~--------~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
..+... ..+ .+.++++++.+|+....... +.+. .+..||||||||++||++++.+
T Consensus 101 ---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 101 ---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred ---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 011111 122 23456788888886432211 1111 2368999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec-CCe
Q 046969 199 ----PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS-GGE 258 (697)
Q Consensus 199 ----P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~-~G~ 258 (697)
|+++++||||+|||+..+..+.+.|++++++|.|||+++|++ ++.+.+|++++|. ++.
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 899999999999999999999999999987799999999995 5678999999996 443
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=6.3e-21 Score=206.82 Aligned_cols=204 Identities=24% Similarity=0.266 Sum_probs=144.0
Q ss_pred cCccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 046969 30 AARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 30 ~~~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 109 (697)
...+..|...|.+..+ +.|.+|++-++++..|.-++++|+||+||||||++|+. |+|.. -+.
T Consensus 75 ~~~~~Di~~~~fdLa~-------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~--f~v 136 (582)
T KOG0062|consen 75 EGKSKDIHIDNFDLAY-------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSG--FHV 136 (582)
T ss_pred cccccceeeeeeeeee-------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCc--cCc
Confidence 3445677788777766 36889999999999999999999999999999999996 22221 111
Q ss_pred CcCCCeEEEEecCC-CCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 110 RVDSGVLAYVTQEN-VLLGTLTVRETITYS-AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 110 ~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
... -.--|++-.. .+..+ |.++.+... ..+ .... +..+..+++|..+|..+-.... .++.||||=|-
T Consensus 137 eqE-~~g~~t~~~~~~l~~D-~~~~dfl~~e~~l--~~~~---~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrM 205 (582)
T KOG0062|consen 137 EQE-VRGDDTEALQSVLESD-TERLDFLAEEKEL--LAGL---TLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRM 205 (582)
T ss_pred hhh-eeccchHHHhhhhhcc-HHHHHHHHhhhhh--hccc---hHHHHHHHHHHhCCCCHHHHhc----cccccCcchhh
Confidence 100 0012333322 23333 344433321 111 0111 3344455588889987543222 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee-eecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~ 266 (697)
|+++||||..+|++|+|||||+.||..+..-+-+.|+.+ +.|+|+++|| +..+-+.|..|+-+++-++- |.|.-+
T Consensus 206 rlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 206 RLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred HHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 999999999999999999999999999999999999886 4799999999 67888899999999876653 455443
No 394
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=2e-22 Score=200.97 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHH
Q 046969 372 KQLSTLTRRSLVNMSRDVGYY-WARIAIYLVVSICVGTIFFDVGTGYTAILARISCGAFITGFMTFMSI-GGFPSFIEEM 449 (697)
Q Consensus 372 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~iG~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~-~~~p~~~~er 449 (697)
+|++.|++|+++..+|||.+. ..+++..++.++++|.+|.+++++.+++ ++.+++++...+..+... +......+|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998555555 677777766666654443 3337788999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046969 450 KIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPN 529 (697)
Q Consensus 450 ~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~ 529 (697)
..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +++.+++.++++..+..+++.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999987 66777777888888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhh
Q 046969 530 YLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDF 584 (697)
Q Consensus 530 ~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef 584 (697)
...+..+.+.+..++++++|.+.+.+.+|+ ||+| +.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~-~~~~-i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS-WLRW-ISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH-HHHH-HHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999996 4888 9999999999999998876
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2e-20 Score=198.17 Aligned_cols=192 Identities=26% Similarity=0.352 Sum_probs=150.9
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
.+-.|-.+|+++-++ ..+++.++++|-|.--.-+||+||||.||||||++|.|.+.|+ .|+..-|-
T Consensus 583 ~PPvLGlH~VtFgy~------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh----- 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH----- 648 (807)
T ss_pred CCCeeecccccccCC------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc-----
Confidence 345688889888764 4688999999999999999999999999999999999999985 67765432
Q ss_pred CCCeEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 DSGVLAYVTQEN--VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 ~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
+-.||+..|+. .|-..-|.-|.|.-..+ ++.++ +...+-.+||...++|+ .+..||||||-||
T Consensus 649 -rL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpyq~----ARK~LG~fGL~sHAHTi----kikdLSGGQKaRV 713 (807)
T KOG0066|consen 649 -RLRIGWFDQHANEALNGEETPVEYLQRKFN------LPYQE----ARKQLGTFGLASHAHTI----KIKDLSGGQKARV 713 (807)
T ss_pred -eeeeechhhhhHHhhccccCHHHHHHHhcC------CChHH----HHHHhhhhhhhhccceE----eeeecCCcchHHH
Confidence 24588888864 56667788887764332 22232 34567789999999986 4678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
++|.--+..|+||||||||++||..+...+.+.|++. ...||+++|+-+ .+.+---.++++.+
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999999988888776 457999999954 34443344555543
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=1.5e-20 Score=188.77 Aligned_cols=146 Identities=21% Similarity=0.205 Sum_probs=110.2
Q ss_pred eeceEEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCC
Q 046969 58 LQGLYGYAEPG-RIMAIMGPSGSGKSTLLDSLA--------GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGT 128 (697)
Q Consensus 58 L~~vs~~i~~G-ei~aI~GpsGsGKSTLL~~La--------G~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~ 128 (697)
.-++|+++.+| ++++|.|||||||||||++|+ |..-+. . ....++|+.|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~------------~~~~~~~~~~~~~~--- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---A------------EGSSLPVFENIFAD--- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---c------------ccccCcCccEEEEe---
Confidence 45899999999 589999999999999999998 322210 0 00123344443111
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 046969 129 LTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPS 208 (697)
Q Consensus 129 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPt 208 (697)
+++.+..+. ....+|+||||++.|+++ +.+|+++++|||+
T Consensus 79 ----------------------------------lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 111111111 123699999999999987 5899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 209 SGLDSASAFFVI-QTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 209 sgLD~~~a~~i~-~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
+|||+.....+. ..++.+.+.|.|+|+++|++ ++.+++|+++.|.+|++++.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 46888877799999999983 678999999999999998874
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=7e-20 Score=185.79 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=109.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----------------CceeEE--EECCEecCcC-CCeEEEE
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV----------------IMTGNV--LFNGKKTRVD-SGVLAYV 119 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~----------------~~~G~I--~~nG~~~~~~-~~~i~yv 119 (697)
+++.+.+.+| +.+|+|||||||||||++|.-.+.... ..++.| .+++...... ...+-++
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~ 93 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL 93 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence 5566666666 889999999999999999875442110 011111 1111111111 1223355
Q ss_pred ecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-CcccCccccCccCCCCCHHHHHHHHHHHHH--
Q 046969 120 TQENV-LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-HDCADTVIGNWHLRGISGGEKKRLSIALEI-- 195 (697)
Q Consensus 120 ~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~LSGGerqRvsIa~~L-- 195 (697)
+|++. -+..+++.|.+. .+.- .+..+ ..+..||||||||+.++.+|
T Consensus 94 ~q~~~~~~~~~~~~e~l~-------------------------~~~~~~~~~~-----~~~~~LS~G~~q~~~i~~~la~ 143 (213)
T cd03277 94 PQDRVGEFAKLSPIELLV-------------------------KFREGEQLQE-----LDPHHQSGGERSVSTMLYLLSL 143 (213)
T ss_pred chHHHHHHHhCChHhHhe-------------------------eeecCCCccc-----cchhhccccHHHHHHHHHHHHH
Confidence 55432 234444444331 1110 01111 13457999999998877554
Q ss_pred --hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCcHHHHHhcc--ceeeecCCee
Q 046969 196 --LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-G-RTVISSIHQPSSEVFALFD--DLFLLSGGET 259 (697)
Q Consensus 196 --l~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g-~tvi~~~Hqp~~~i~~l~D--~v~lL~~G~i 259 (697)
+.+|+++++||||+|||+.++..+++.|++++++ | .|+|+++|+.. ++.+.+| ++++|.+|+-
T Consensus 144 ~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~~v~~l~~g~~ 212 (213)
T cd03277 144 QELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKMTVLCVYNGPH 212 (213)
T ss_pred HhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCceEEEEEecCcc
Confidence 5899999999999999999999999999999876 5 58999999964 4566666 7888888863
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=3.4e-19 Score=173.42 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=157.7
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--- 110 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--- 110 (697)
-.++++++.+.++. ..+++-|+|+.++.|.-+.++|.||||||||||+|+|..--. .|.|.++|++.-
T Consensus 12 ~aievsgl~f~y~~------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEeccc------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccc
Confidence 46889999998863 458999999999999999999999999999999999975432 589999998641
Q ss_pred --cCCCeEEEEecC----------CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccC
Q 046969 111 --VDSGVLAYVTQE----------NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHL 178 (697)
Q Consensus 111 --~~~~~i~yv~Q~----------~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 178 (697)
.......|+--+ --+-..+++.+ +.|+..- ... + +-+.+++.+.+.- .|..
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~g-----~dp-~---Rre~LI~iLDIdl-------~WRm 145 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVGG-----DDP-E---RREKLIDILDIDL-------RWRM 145 (291)
T ss_pred cccccCceeEecccccccccccccccccccccHHH-HHhhccC-----CCh-h---Hhhhhhhheeccc-------eEEE
Confidence 111223343322 11223456544 4444321 111 2 3344555555432 1334
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
..+|-||||||.|++.|++.-++|+|||-|-.||..++..+++.+++-+++ |.||+..||-- +-+.....+++.+++|
T Consensus 146 HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~G 224 (291)
T KOG2355|consen 146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSG 224 (291)
T ss_pred eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCC
Confidence 579999999999999999999999999999999999999999999998875 99999999995 5678889999999999
Q ss_pred eeeeecChhhHHH
Q 046969 258 ETVYFGEAKLAVE 270 (697)
Q Consensus 258 ~iv~~G~~~~~~~ 270 (697)
+++-.-+.++..+
T Consensus 225 kl~~~l~~~~i~e 237 (291)
T KOG2355|consen 225 KLVDNLKYQKIKE 237 (291)
T ss_pred eeeeccccchhhh
Confidence 9987655554444
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=9.6e-20 Score=194.92 Aligned_cols=172 Identities=31% Similarity=0.451 Sum_probs=129.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEE-------EECCEecCc-----C--C----CeEEEEecCCCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVI-MTGNV-------LFNGKKTRV-----D--S----GVLAYVTQENVL 125 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~-~~G~I-------~~nG~~~~~-----~--~----~~i~yv~Q~~~l 125 (697)
.++|++++|+||||-||||-+|+|+|.+.|+.. ..+.- .+-|..+.. . . ...-||.--+..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 479999999999999999999999999988631 11100 011111100 0 0 112233322333
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 046969 126 LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLD 205 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLD 205 (697)
+-. ||.|-|.-. +.+-..+++++.++|++..|+-|. .|||||-||++||.+++.+.+++++|
T Consensus 177 ~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 177 VKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred hcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEc
Confidence 333 777766422 112357788999999999999774 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 206 EPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 206 EPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
||||=||...+....+.++++++.+++||++-||.. -+--++|-|.++.
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~Y 287 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILY 287 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEe
Confidence 999999999999999999999998999999999973 4556788888886
No 400
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.8e-19 Score=193.08 Aligned_cols=198 Identities=25% Similarity=0.325 Sum_probs=156.5
Q ss_pred cceEEEEEEEEEecccccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTK-RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~-~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
+-.+.+.++++.++ +.. +++.+++..++.-+-.+++|+||+||||++|++.|-+.|. .|.+.+++
T Consensus 360 ~p~l~i~~V~f~y~------p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~----- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYT------PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP----- 425 (582)
T ss_pred CCeeEEEeeeccCC------CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc-----
Confidence 34678888886653 233 7999999999999999999999999999999999987763 77776654
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvs 190 (697)
+.+++|-.|..+=+-.++|.+ +.+....+ | ..++++ +++.+..+||+. .+.. .+.+||||||-||+
T Consensus 426 -r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~~ee----~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 -RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKTEEE----IRRHLGSFGLSGELALQ-----SIASLSGGQKSRVA 492 (582)
T ss_pred -cceecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCCHHH----HHHHHHhcCCCchhhhc-----cccccCCcchhHHH
Confidence 356899999865444555544 33434443 2 335555 445677899964 2332 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
+|.....+|.+|+|||||+.||-.+-..+.+.|+.. +..||+++|+- +.+-.+|+.+.+.++|++.-
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999988886 45799999994 68889999999999999864
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=9.1e-19 Score=172.78 Aligned_cols=74 Identities=26% Similarity=0.305 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 181 ISGGEKKRLSIALEIL----TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll----~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
||||||||++||++++ .+|+++++|||++|||+..+..+.+.|++++++|.|+|+++|++ +..+.+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999988789999999997 35678999999963
No 402
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.79 E-value=2.9e-19 Score=193.59 Aligned_cols=194 Identities=25% Similarity=0.376 Sum_probs=144.7
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..+.++|+-+..|+ ...++..+||.++||--+.|.||||||||+|.++|+|+.|- ++|.-.....
T Consensus 480 ~gI~lenIpvItP~------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~P~~ 544 (728)
T KOG0064|consen 480 NGIILENIPVITPA------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSIPRP 544 (728)
T ss_pred cceEEecCceeccC------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeecCCC
Confidence 45788888877653 56689999999999999999999999999999999999874 3444333344
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHhh---ccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCc----cCCCCCHHHH
Q 046969 114 GVLAYVTQENVLLGTLTVRETITYSAH---LRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNW----HLRGISGGEK 186 (697)
Q Consensus 114 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~----~~~~LSGGer 186 (697)
..+-|+||.|..-. =|.||-+.|.-. ++ .++.++ +..+.+++.+.|++.+.+-.|=. .-.-||||||
T Consensus 545 ~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGek 618 (728)
T KOG0064|consen 545 NNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEK 618 (728)
T ss_pred cceEeccCCCccCc-CcccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHH
Confidence 56999999987653 377777665311 00 012222 33556777777777666654411 1236999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
||+.+||.+-++|+.-+|||-||+........+.+..++ .|.+.|-++|+|+ +++.-..++-
T Consensus 619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll~ 680 (728)
T KOG0064|consen 619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLLE 680 (728)
T ss_pred HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHHh
Confidence 999999999999999999999999999888888877765 4999999999996 4554444433
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.78 E-value=4.9e-19 Score=177.73 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=104.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++.+++|+++. +|++++|+||||||||||||+|+|... +...|.++.. -.+++|.+.+++.+|+.|
T Consensus 13 ~~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchh
Confidence 35678888776 479999999999999999999998542 1123443321 136677788999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
++.+... ...++. +++.++++.+++ .+|+++++|||++|+|+
T Consensus 79 ~l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9977431 112333 456777776652 68999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCCEEEEEeCCCcHHHHH
Q 046969 214 ASAFFVI-QTLRNIARDGRTVISSIHQPSSEVFA 246 (697)
Q Consensus 214 ~~a~~i~-~~L~~la~~g~tvi~~~Hqp~~~i~~ 246 (697)
.....+. ..++++.+.|.|+|++||++. .+..
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~ 153 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE-LADL 153 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHh
Confidence 9998775 478888877999999999973 4433
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=184.31 Aligned_cols=186 Identities=28% Similarity=0.390 Sum_probs=139.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEecCcCCCeEEEEecCC-CCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH-----VIMTGNVLFNGKKTRVDSGVLAYVTQEN-VLLG 127 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~I~~nG~~~~~~~~~i~yv~Q~~-~l~~ 127 (697)
...+|+|||++++||++++|+|+|||||||||++|+|..... ...+|.|.+--. ...+.+|-+. .-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n------t~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN------TVSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc------chhhccCcccccccC
Confidence 467999999999999999999999999999999999974321 123565554211 1234555443 2244
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP 207 (697)
.-|+.|.+.- .+. +. ....+++...||.+..-.. ...+.||-|||.|+.||.++..+|++++.||-
T Consensus 469 ~~tilehl~s-----~tG-----D~-~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRS-----KTG-----DL-NAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhh-----ccC-----ch-hHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 5677776641 111 11 2245688889987632111 13468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHh-ccceeeecCCeee
Q 046969 208 SSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFAL-FDDLFLLSGGETV 260 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~iv 260 (697)
.+.||..|+..+.+.|.+++++ |.|++++||+| +.+-++ -|.++++.-|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 9999999999999999999985 99999999998 345566 6888888766543
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=1e-17 Score=208.22 Aligned_cols=128 Identities=24% Similarity=0.331 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEE
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTK---PQLLFL 204 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~---P~lllL 204 (697)
.|||.|.+.|.... .. -.+.-+.|.++||.-.. .| .....|||||.||+-+|.+|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~~--------~~-i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPFL--------KK-IQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhcc--------HH-HHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 47888888776321 11 23345678888986431 22 23457999999999999999976 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHHH
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAVE 270 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~~ 270 (697)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| ++|++++.|+|+++.+
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999996 577889999999 4689999999998654
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=6.1e-19 Score=180.01 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=115.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEE-EEecCCCCCCCCCHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLA-YVTQENVLLGTLTVR 132 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 132 (697)
.+.+.+|+++...+|++++|.||||+||||||++++-.. + ...+| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~--------la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L--------MAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H--------HHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999998210 0 01122 4554432111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI--LTKPQLLFLDEP--- 207 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L--l~~P~lllLDEP--- 207 (697)
.+++++..+|+.+.. .+++|.|+++++.+++++ +++|++++||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344455665432 247999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 208 SSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|++||....... .++.+++ .|.++|++||+ .++.+++|++..+++|++.+.+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3355554 48999999997 47899999999999999987764
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=9.3e-18 Score=190.44 Aligned_cols=128 Identities=27% Similarity=0.413 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKP---QLLFL 204 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P---~lllL 204 (697)
.|||.|...|....- . -.+.-+.|.++||.=. ..| .....|||||.|||-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~p--------~-I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAIP--------K-IARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcch--------H-HHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 478888888875421 1 2233456677888532 223 234579999999999999999887 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHHH
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAVE 270 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~~ 270 (697)
||||+||-.....++++.|.+|.++|-|||++-|+. ++.+.+|.|+-| .+|++|..|.|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999996 688999999999 4689999999998765
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1e-17 Score=176.73 Aligned_cols=76 Identities=32% Similarity=0.439 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 180 GISGGEKKRLSIALEILT----KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~----~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
.||||||||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999987654 9999999999999999999999999999865 789999999974 568999999998
Q ss_pred CCe
Q 046969 256 GGE 258 (697)
Q Consensus 256 ~G~ 258 (697)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 653
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=4.4e-18 Score=165.34 Aligned_cols=75 Identities=31% Similarity=0.402 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 180 GISGGEKKRLSIALEILT----KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~----~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++..+|.++|++||++ ++.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 499999999999999987 7899999999999999999999999999876689999999997 4667899999996
Q ss_pred C
Q 046969 256 G 256 (697)
Q Consensus 256 ~ 256 (697)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=2.6e-17 Score=196.91 Aligned_cols=136 Identities=26% Similarity=0.404 Sum_probs=112.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCC------CHHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhC
Q 046969 126 LGTLTVRETITYSAHLRLPSSM------SKEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~------~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
+..+||.|.+.|.-.+.++... -.+++.++++ .++.+||.+. .|+.+ ..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 4578999999996555332110 0123445564 6888999865 67766 47999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHH
Q 046969 199 P--QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAV 269 (697)
Q Consensus 199 P--~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~ 269 (697)
| ++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..+|+|++| .+|++++.|++++..
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 999999999999999999999999999888999999999974 55 469999999 999999999988753
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=3.8e-17 Score=195.11 Aligned_cols=136 Identities=28% Similarity=0.408 Sum_probs=109.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhC
Q 046969 126 LGTLTVRETITYSAHLRLPSSMS------KEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
+-.|||.|.+.|...+.++.... .+++.++++ .+..+||... .++.+ ..|||||+|||.||++|..+
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl~-~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLG-FLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-hHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhC
Confidence 34689999999987764321100 012233333 3667888754 56655 57999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHH
Q 046969 199 P--QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAV 269 (697)
Q Consensus 199 P--~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~ 269 (697)
| ++++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999988999999999973 45 589999999 899999999987753
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.69 E-value=2.6e-17 Score=165.58 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=103.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHh
Q 046969 60 GLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSA 139 (697)
Q Consensus 60 ~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 139 (697)
..++++.+|++++|+|||||||||||++|++..-.. ..|... ......++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~~~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------PAESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------cccccccCCcCEE---EEEecCccc-----
Confidence 345556689999999999999999999999542100 122111 0011223332221 111111111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 046969 140 HLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFV 219 (697)
Q Consensus 140 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i 219 (697)
.+.. ...++++++ |++.+.+++.+|+++++||||+|+|+.....+
T Consensus 85 -----------------------------i~~~-----~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 -----------------------------ISDG-----RSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------ccCC-----ceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 1111 124565555 57777888999999999999999999988887
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 220 IQ-TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 220 ~~-~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
.. .++.+.+.+.++|+++|++ ++.+.+|++..+..|++...++..
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCC
Confidence 65 5666777789999999995 677889999999999998887653
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=6.9e-16 Score=162.26 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhc-
Q 046969 179 RGISGGEKKRLSIALEIL---------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALF- 248 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll---------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~- 248 (697)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. . +++++|+. ..+.+++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~-~~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDL-ADFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCc-hhccchhc
Confidence 458999999999999985 7999999999999999999999999998753 3 45555553 3566677
Q ss_pred --cceeeecCCee
Q 046969 249 --DDLFLLSGGET 259 (697)
Q Consensus 249 --D~v~lL~~G~i 259 (697)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 67999999985
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2e-17 Score=175.51 Aligned_cols=211 Identities=25% Similarity=0.323 Sum_probs=147.5
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEec
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL---SRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~nG~~~ 109 (697)
.+.+.++|.+++. ..+.+..|-|++|-.|.-++++||||-||||||+.|+.|- +|+ =+|++..+.+
T Consensus 262 a~DIKiEnF~ISA-------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEv 330 (807)
T KOG0066|consen 262 AMDIKIENFDISA-------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEV 330 (807)
T ss_pred cccceeeeeeeec-------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeee
Confidence 3578888887764 3577899999999999999999999999999999999873 443 2333333221
Q ss_pred C------------cCCCeEEEEecCCCC-----CCCCCHHHHHHH-HhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCc
Q 046969 110 R------------VDSGVLAYVTQENVL-----LGTLTVRETITY-SAHLRLPSSMSKEDIKSHVDGTILELGLHDCADT 171 (697)
Q Consensus 110 ~------------~~~~~i~yv~Q~~~l-----~~~lTV~E~l~~-~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~ 171 (697)
. ...++...+..++.| -...|+.|-+.- +..+|--. ....+.++..++.-+|.+.-...
T Consensus 331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG---A~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG---ADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc---cccchhHHHHHHhhcCCChhHhc
Confidence 0 001111111111111 133466665532 22333211 12223456677777887643322
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccce
Q 046969 172 VIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDL 251 (697)
Q Consensus 172 ~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v 251 (697)
+ ....+|||=|-||++||||...|-+|.|||||+.||-....-+-+.|+.+. +|.++++|+- ..+-..|..|
T Consensus 408 r----Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdI 479 (807)
T KOG0066|consen 408 R----PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDI 479 (807)
T ss_pred C----CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHH
Confidence 2 235799999999999999999999999999999999999988889998885 5999999996 5788999999
Q ss_pred eeecCCeeee-ecCh
Q 046969 252 FLLSGGETVY-FGEA 265 (697)
Q Consensus 252 ~lL~~G~iv~-~G~~ 265 (697)
+.|++-++.| .|.-
T Consensus 480 IHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 480 IHLDNQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhhhhhcchH
Confidence 9999888764 3543
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=3.2e-16 Score=157.91 Aligned_cols=142 Identities=23% Similarity=0.319 Sum_probs=102.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++.+.+|+++..++|++++|+||||+||||||+++++..-- +++ | .|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChh
Confidence 46799999999999999999999999999999999986311 110 1 133 33445566666
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
+|... ++..+..+.. ...+|+|++|+ +.+.+++++|+++++|||++|+|+
T Consensus 74 ~I~~~------------------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLSR------------------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeEe------------------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 66422 2222212221 23689999965 566778899999999999999999
Q ss_pred HHHHHH-HHHHHHHHhCCCEEEEEeCCCcHHHHHhc
Q 046969 214 ASAFFV-IQTLRNIARDGRTVISSIHQPSSEVFALF 248 (697)
Q Consensus 214 ~~a~~i-~~~L~~la~~g~tvi~~~Hqp~~~i~~l~ 248 (697)
.....+ ...++.+.+.|.++|++||+. ++.+.+
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 876665 456777877899999999995 344443
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.61 E-value=2.4e-15 Score=152.97 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=108.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++.+.+++++..++ ++++|.|||||||||||+++++..-. |+ .|.........++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchh
Confidence 45689999999887 99999999999999999999875321 11 12222222345777754 567777777
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---C
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG--GEKKRLSIALEILTKPQLLFLDEP---S 208 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG--GerqRvsIa~~Ll~~P~lllLDEP---t 208 (697)
++..+ .|- .|.++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 66432 111 233334444444679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 209 SGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 209 sgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
+++|.... ....++.+.+. +.|+|++||+. ++.+++|++..+.+|++...+..++
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCe
Confidence 88887552 23445555565 89999999995 6888999988888898877665543
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.54 E-value=1.6e-14 Score=151.26 Aligned_cols=137 Identities=25% Similarity=0.293 Sum_probs=93.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC------CCeEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD------SGVLAYVTQENVLLGTLTVRETITYSAHLR 142 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 142 (697)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++... .+.+++++|++ +...++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999885 89999999986311 12356777755 334445544311
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 046969 143 LPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT 222 (697)
Q Consensus 143 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~ 222 (697)
+.+ | -....+..+|+++++|||++ ...+...
T Consensus 182 ------k~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------KAE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------HHH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 000 1 12222335999999999974 2334444
Q ss_pred HHHHHhCCCEEEEEeCCCcHH-H-----------HHhccceeeecCCeeeeecChhh
Q 046969 223 LRNIARDGRTVISSIHQPSSE-V-----------FALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 223 L~~la~~g~tvi~~~Hqp~~~-i-----------~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
++.+ ++|.|+|+|+|++..+ + ..+|||+++|++|+ ..|.+++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 4444 4699999999986432 2 26799999999886 5565543
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.53 E-value=5.4e-14 Score=149.96 Aligned_cols=177 Identities=23% Similarity=0.338 Sum_probs=134.5
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCC
Q 046969 55 KRLLQGLYGYAEPG-----RIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTL 129 (697)
Q Consensus 55 ~~iL~~vs~~i~~G-----ei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~l 129 (697)
+.-+-+..+.++.| |++..+|.||-|||||++++||+++++ ..|+|-. -.++|=||.-.-=.+-
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCccccc
Confidence 44566777777766 678999999999999999999999885 2344421 2367777765433445
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046969 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS 209 (697)
Q Consensus 130 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts 209 (697)
|||+.+.--.+- .-...+.+.++++-|.+++..|.-| .+|||||.|||++|.+|=..+++++.|||.+
T Consensus 418 tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 899877532110 1111345777888888888777765 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 210 GLDSASAFFVIQTLRNIA-RDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la-~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
=||+..+..--+.+++.- +.++|-.++-|+-- ..--++||+++..
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 999999999999998865 45889999999953 2334789988764
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.47 E-value=2.5e-14 Score=142.07 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI-QTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~-~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
..+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 358887776433332 34599999999999999999887765 556777774 89999999996 57888886444444
Q ss_pred Ceeee
Q 046969 257 GETVY 261 (697)
Q Consensus 257 G~iv~ 261 (697)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.44 E-value=3.5e-12 Score=139.57 Aligned_cols=77 Identities=23% Similarity=0.388 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhc-
Q 046969 179 RGISGGEKKRLSIALEIL---------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALF- 248 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll---------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~- 248 (697)
..+|.||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 569999999999999885 799999999999999999999999988764 458899999863 455554
Q ss_pred -cceeeecCCee
Q 046969 249 -DDLFLLSGGET 259 (697)
Q Consensus 249 -D~v~lL~~G~i 259 (697)
++++.+.+|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 47889999986
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.43 E-value=1.5e-13 Score=139.81 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 046969 154 SHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL----TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229 (697)
Q Consensus 154 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll----~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~ 229 (697)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 334555555555432 59999999999997764 46799999999999999999999999999865
Q ss_pred CCEEEEEeCCCcHHHHHhccceeeec
Q 046969 230 GRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 230 g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+.-+|++||++ .+++.+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 6899999988773
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.8e-12 Score=131.61 Aligned_cols=128 Identities=26% Similarity=0.271 Sum_probs=87.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCC-CCCHHH
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAG--RLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLG-TLTVRE 133 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~-~lTV~E 133 (697)
|=+|+++.=..+.+++|.||||+|||||||.++. .+.. .|...... ...++|..|....+. ..++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhh
Confidence 4455554322238999999999999999999984 3321 45443321 234677777532221 111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS--GGEKKRLSIALEILTKPQLLFLDEPSSGL 211 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRvsIa~~Ll~~P~lllLDEPtsgL 211 (697)
++| --|-||++++++++.+|+++++|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 34678999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 046969 212 DSASAFFV-IQTLRNIARD---GRTVISSIHQP 240 (697)
Q Consensus 212 D~~~a~~i-~~~L~~la~~---g~tvi~~~Hqp 240 (697)
|+.....+ ...++++++. +.++|++||++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 99765554 5688888764 35899999996
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.36 E-value=1.1e-12 Score=117.87 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=59.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----cCCCeEEEEecCCCCCCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-----VDSGVLAYVTQENVLLGTL 129 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-----~~~~~i~yv~Q~~~l~~~l 129 (697)
+.+|+++++.+++||+++|+||||||||||++++. +|++.++|.+.. ...+..+|++|+ ++..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999986 588999998752 123557777777 5544
Q ss_pred CHHHHHHHH
Q 046969 130 TVRETITYS 138 (697)
Q Consensus 130 TV~E~l~~~ 138 (697)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999873
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.36 E-value=1.5e-12 Score=154.26 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=90.5
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCcCCCeEEEEecCCC-CCCCCCHHHHHH
Q 046969 60 GLYGYAEPG-RIMAIMGPSGSGKSTLLDSLAGRL-SRHVIMTGNVLFNGKKTRVDSGVLAYVTQENV-LLGTLTVRETIT 136 (697)
Q Consensus 60 ~vs~~i~~G-ei~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~ 136 (697)
.+++.+.+| ++++|.||||+||||||++|+|.. .+ ..| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G----------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG----------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC----------------CCccCCcccccc---chhhee
Confidence 378888877 999999999999999999999872 22 122 02332221 111 011110
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046969 137 YSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASA 216 (697)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a 216 (697)
.. ...+ +.+. .....+|+|+++++.|++.+ .+|+++++|||++|+|+...
T Consensus 371 --~~------i~~~---~si~------------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 371 --AD------IGDE---QSIE------------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEG 420 (771)
T ss_pred --ee------cChH---hHHh------------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHH
Confidence 00 0000 0010 01246999999999998876 89999999999999999999
Q ss_pred HHH-HHHHHHHHhCCCEEEEEeCCCc
Q 046969 217 FFV-IQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 217 ~~i-~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
..+ ...++.+++.|.++|++||++.
T Consensus 421 ~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 421 SALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHH
Confidence 998 5778888888999999999963
No 425
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=3e-11 Score=123.34 Aligned_cols=139 Identities=22% Similarity=0.244 Sum_probs=91.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR-LSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~ 132 (697)
++.+.+|+++.+++|++++|+||||+||||+|+++++. +.+ ..|...... . -.++|..|- +..+...
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~-~-----~~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPAS-S-----ATLSIFDSV---LTRMGAS 84 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcC-c-----eEEeccceE---EEEecCc
Confidence 35689999999999999999999999999999999994 333 245543321 1 123332221 1111111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS--GGEKKRLSIALEILTKPQLLFLDEPSSG 210 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRvsIa~~Ll~~P~lllLDEPtsg 210 (697)
|.+. .++| ..|-+|++-...-+++|+++++|||.+|
T Consensus 85 d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~g 122 (222)
T cd03287 85 DSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRG 122 (222)
T ss_pred cccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCC
Confidence 1110 0111 2344445444555678999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCcHHHHHhc
Q 046969 211 LDSASAFFV-IQTLRNIARD-GRTVISSIHQPSSEVFALF 248 (697)
Q Consensus 211 LD~~~a~~i-~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~ 248 (697)
.|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 123 T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 123 TSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred CChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 987777764 5677777776 89999999997 344444
No 426
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.28 E-value=6.5e-10 Score=114.34 Aligned_cols=225 Identities=15% Similarity=0.121 Sum_probs=150.9
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHH-H
Q 046969 380 RSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDV-GTG--YTAILA----RISCGAFITGFMTFMSIGGFPSFIEEMK-I 451 (697)
Q Consensus 380 R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~-~~~--~~~i~~----r~~~~~f~~~~~~~~s~~~~p~~~~er~-v 451 (697)
|+++...|||.....-+++-+++.+++|.+|-+. +.+ ..+... -.|.+.+.....+.. .+.. ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhH-HHHHHHhC
Confidence 6778889999888887888888888888877542 111 111111 112222111111111 1111 223333 2
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 046969 452 FYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPNYL 531 (697)
Q Consensus 452 ~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~ 531 (697)
+.++....=.+...|+++|.+.+++..++..+++..+.+++.+++.. .++.+++..++...+..+++.++++.+++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33333333446889999999999999999999999999988776543 3444444455556677899999999999998
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCCCCCCccCHHHHHhhhcCC
Q 046969 532 MGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMFPGEPKLKGEDIIKNTFGI 611 (697)
Q Consensus 532 ~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~g~ 611 (697)
....+.+.+..+++++||.+.|.+.+|++ ++| +.+++|.+|+.|++-.. ..|.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~-~~~-i~~~~P~~~~~~~~r~~-~~~~------------------------ 208 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAW-MQG-LAKINPLTYAVDGARYY-LAGV------------------------ 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHH-HHH-HHHHCcHHHHHHHHHHH-HhCC------------------------
Confidence 88888888888889999999999999985 888 99999999999985432 2110
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHH
Q 046969 612 SIDRSKWWDLSAIVVILISYRLLFF 636 (697)
Q Consensus 612 ~~~~~~w~~~~il~~~~~~~~~l~~ 636 (697)
..-.+.|.++++++.+.+++.+++.
T Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 209 SPTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHH
Confidence 0001256778888888887776654
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.28 E-value=5.4e-12 Score=134.92 Aligned_cols=171 Identities=27% Similarity=0.343 Sum_probs=122.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEE------ECCEecCcCC-C----------eEEEEecCCCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVI--MTGNVL------FNGKKTRVDS-G----------VLAYVTQENVLL 126 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~I~------~nG~~~~~~~-~----------~i~yv~Q~~~l~ 126 (697)
+||++.+++|.||-||||-|++|+|.++|+.. ..+-.+ +.|..+.... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 69999999999999999999999999987520 011110 1111110000 0 011222211111
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 046969 127 GTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206 (697)
Q Consensus 127 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDE 206 (697)
..+|.++|.- ...++..+++++.+.|.+..|+-+. .|||||-||.+||++-+.+.++.++||
T Consensus 178 -k~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 -KGTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred -HHHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 1134333321 1122356677888888888888764 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 207 PSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 207 PtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
|.+-||...+..-...|+.+....+-||++.||.+ .+--+.|-+..|.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLY 287 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEe
Confidence 99999999999999999999988899999999974 5566789898886
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.27 E-value=5.8e-12 Score=127.70 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPS-----SGLDSASAFFVIQTLRNIAR 228 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPt-----sgLD~~~a~~i~~~L~~la~ 228 (697)
-|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.25 E-value=1.2e-11 Score=143.10 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 179 RGISGGEKKRLSIALEILTK----PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~----P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+.+||||+||++||++++.. |++|++||||+|||+.++..+.+.|+++++ ++|||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999973 45789999999
Q ss_pred cCCe
Q 046969 255 SGGE 258 (697)
Q Consensus 255 ~~G~ 258 (697)
.+|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 430
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.25 E-value=2e-11 Score=126.62 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=65.1
Q ss_pred cCCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCcHHHHHh
Q 046969 177 HLRGISGGE--------KKRLSIALEILTKPQLLFLDEPSSGLDSASAFF-VIQTLRNIARDGRTVISSIHQPSSEVFAL 247 (697)
Q Consensus 177 ~~~~LSGGe--------rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~-i~~~L~~la~~g~tvi~~~Hqp~~~i~~l 247 (697)
..+.+|||| +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCC
Confidence 345689999 9999999999999999999 999999766654 55 5665556889999999964 4678
Q ss_pred ccceeeecCCee
Q 046969 248 FDDLFLLSGGET 259 (697)
Q Consensus 248 ~D~v~lL~~G~i 259 (697)
+|.|.+|+.|++
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999987
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.22 E-value=2.8e-11 Score=139.13 Aligned_cols=76 Identities=28% Similarity=0.454 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 179 RGISGGEKKRLSIALEILT----KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~----~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+| .+..++|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 69999999998 356899999999
Q ss_pred cCC
Q 046969 255 SGG 257 (697)
Q Consensus 255 ~~G 257 (697)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 865
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.21 E-value=1.9e-11 Score=145.35 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQ-TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~-~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
..+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++ ......+|+..+. ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 46999999999999988 8999999999999999999888864 6777777899999999995 3333445554443 56
Q ss_pred eeeee
Q 046969 258 ETVYF 262 (697)
Q Consensus 258 ~iv~~ 262 (697)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 66654
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.21 E-value=8.7e-11 Score=120.77 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=94.3
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 046969 64 YAEPGRIMAIMGPSGSGKSTL-LDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLR 142 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTL-L~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 142 (697)
-+++|++++|.|+|||||||| ++.+.+..++ | ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g-------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-----G-------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----C-------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 489999999999999999999 7888886543 1 123455532 36666666554432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q 046969 143 LPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL----TKPQLLFLDEPSSGL----DSA 214 (697)
Q Consensus 143 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll----~~P~lllLDEPtsgL----D~~ 214 (697)
. ..++ .... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~----~~~~-------~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y----DINK-------KLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C----chHH-------Hhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 1111 1110 10000010 1 236777655544443332 369999999999999 778
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCcH------HHHHhccceeeec
Q 046969 215 SAFFVIQTLRNIARDGRTVISSIHQPSS------EVFALFDDLFLLS 255 (697)
Q Consensus 215 ~a~~i~~~L~~la~~g~tvi~~~Hqp~~------~i~~l~D~v~lL~ 255 (697)
....+++.++++++.|.|+++++|+... .+..++|-++.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888999999998888888877665320 0234567777775
No 434
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.19 E-value=6.6e-10 Score=112.06 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=118.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 046969 461 YGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPNYLMGVVVGAGV 540 (697)
Q Consensus 461 Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~~~~a~~~~~~~ 540 (697)
-+.+.++++|++..++..++++++...+.|++.|++++ +++.+++.+++...+..+++.++++++++...+ ++...
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 34567899999999999999999999999999999875 455666667777778889999999999876443 33344
Q ss_pred HHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCCCCCCccCHHHHHhhhcCCccCchhhHH
Q 046969 541 LGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMFPGEPKLKGEDIIKNTFGISIDRSKWWD 620 (697)
Q Consensus 541 ~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~g~~~~~~~w~~ 620 (697)
..+.++++|.+.|.+.+|++ ++| +.|++|.+|+.+++-...+.| . ..+.|.+
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~-~~~-i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~ 184 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAF-FQA-IHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQA 184 (208)
T ss_pred HHHHHccCCCccchhhCHHH-HHH-hhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHH
Confidence 45666689988999999985 898 999999999999986554321 0 1236888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 046969 621 LSAIVVILISYRLLFFIILKFKE 643 (697)
Q Consensus 621 ~~il~~~~~~~~~l~~~~L~~~~ 643 (697)
+++++++.+++.+++....|.++
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999988888887766544
No 435
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=4.8e-11 Score=147.40 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=73.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH
Q 046969 177 HLRGISGGEKKRLSIALEILT----------KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA 246 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~----------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~ 246 (697)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 457899999999999999986 7999999999999999999999999999988899999999997 56888
Q ss_pred hccceeeecC
Q 046969 247 LFDDLFLLSG 256 (697)
Q Consensus 247 l~D~v~lL~~ 256 (697)
++|+|.+++.
T Consensus 1026 ~~~~i~v~~~ 1035 (1042)
T TIGR00618 1026 IPHRILVKKT 1035 (1042)
T ss_pred hCCEEEEEEC
Confidence 9999999964
No 436
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.18 E-value=5.2e-10 Score=124.60 Aligned_cols=172 Identities=21% Similarity=0.276 Sum_probs=112.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---C------c----CCCeEEEEe
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT---R------V----DSGVLAYVT 120 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~---~------~----~~~~i~yv~ 120 (697)
..++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- . . .++.+.+|.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998874 79999866542 1 0 135678887
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH-HHHhhCC
Q 046969 121 QENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA-LEILTKP 199 (697)
Q Consensus 121 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa-~~Ll~~P 199 (697)
+.|.-. -.+....+.+ .+ +.+...+.|- |.++- ...++ |.+-| |++.
T Consensus 221 ~~~~~~---~~r~~~~~~a-------------~~-iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis--- 268 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA-------------TA-IAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG--- 268 (438)
T ss_pred CCCCCH---HHHHHHHHHH-------------HH-HHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH---
Confidence 644211 0111111111 00 1111222221 11110 01111 11111 1111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 200 QLLFLDEP--SSGLDSASAFFVIQTLRNIAR--DGR-----TVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 200 ~lllLDEP--tsgLD~~~a~~i~~~L~~la~--~g~-----tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
+.+.|| |+|+|+.....+.+.++++.. +|. ||++.+|+..+ .+||++..+.+|+++..++..
T Consensus 269 --l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 269 --LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred --HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHH
Confidence 122564 789999999999999999884 575 99999999863 789999999999999998765
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.18 E-value=6.2e-11 Score=119.97 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 178 LRGISGGEKKRLSIALEILTKP---QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~~P---~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
...+|.|+||.+.|+..+...+ .++++|||-++|+|..+..+++.|+++++.+.-||+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3467999999999999998876 899999999999999999999999888776889999999983
No 438
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.17 E-value=3.2e-11 Score=139.56 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=69.7
Q ss_pred cCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHH
Q 046969 177 HLRGISGGEKKRLSIALEIL----------TKPQLLFLDEPS-SGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVF 245 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll----------~~P~lllLDEPt-sgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~ 245 (697)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||+++|++ +..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 34689999999999999887 599999999998 789999999999999998 589999999996 356
Q ss_pred HhccceeeecC-Cee
Q 046969 246 ALFDDLFLLSG-GET 259 (697)
Q Consensus 246 ~l~D~v~lL~~-G~i 259 (697)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 543
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=3.5e-10 Score=129.61 Aligned_cols=137 Identities=25% Similarity=0.389 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH------HHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhC
Q 046969 126 LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDG------TILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~------~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
+..|++.|.+.|...+.+... ...-.+..+.+ .|..+||.-. .++.. ..|||||.||+-+|..+=++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a-----~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccC-----CCcChhHHHHHHHHHHhccc
Confidence 456889999999887764321 11111222222 2334566432 33333 47999999999999999876
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHHH
Q 046969 199 --PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAVE 270 (697)
Q Consensus 199 --P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~~ 270 (697)
-=+++||||+-||-+..-..+++.|++|.+.|-|+|++.||+ ++...+|+|+=+ .+|+|++.|+++++++
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 346799999999999999999999999999999999999995 688999999998 5789999999998764
No 440
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.13 E-value=1.2e-08 Score=106.38 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Q 046969 374 LSTLTRRSLVNMSRD-VGYYWARIAIYLVVSICVGTIFFDVGTGYTAILARISCGAFITGFMTFMSI-GGFPSFIEEMKI 451 (697)
Q Consensus 374 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~-~~~p~~~~er~v 451 (697)
...+.+|+++..+|+ |......+++-++.-+++|..|-....+..+. + ..-|..-+.+.+..+ +++-. .--.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~--y~~f~~pg~l~~~~~~~~~~~--~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-S--YAAFLAAGMVATSAMTASTFE--TIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-C--HHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 445679999999999 88888888888888888888765431111111 1 111222222222111 11000 00123
Q ss_pred HHHHhhCCC--------CchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046969 452 FYHEKLNGY--------YGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVV 523 (697)
Q Consensus 452 ~~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~i 523 (697)
+.|||.+|. -++..+.+|+.+.+.-..++..++...+.++ .|..+. .....+...+++...+..++|+++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 2678999999999877777776665555443 344443 233333344444555667899999
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCCCCCCccCHHH
Q 046969 524 ASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMFPGEPKLKGED 603 (697)
Q Consensus 524 a~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~ 603 (697)
+++.++......+...+..+++.+||.+.|.+.+|.+ +++ +.+++|++|+.|++-.- +.|
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~-lq~-i~~~nPlt~~v~~~R~~-~~g----------------- 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDV-IQG-MTHFLPLAHSIDDIRPV-MLG----------------- 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHH-HHH-HHHHCcHHHHHHHHHHH-HhC-----------------
Confidence 9999999888888888888899999999999999985 787 99999999999985332 211
Q ss_pred HHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 046969 604 IIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILK 640 (697)
Q Consensus 604 vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~ 640 (697)
-+ ..+.|.++++++++.+++.+++....|
T Consensus 220 -------~~-~~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 220 -------GP-GTQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred -------CC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 012356678888888877776665544
No 441
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=4.6e-10 Score=114.31 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=89.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++.+-+|+++..++|++++|.||||+||||+++++++..--. .. |.........++++ |.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~------G~~vpa~~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QM------GMDVPAKSMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--Hc------CCccCccccEeccc---cEEEEecCccc
Confidence 457889999999999999999999999999999999763110 01 11111111112211 22222222222
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS--GGEKKRLSIALEILTKPQLLFLDEPSSGL 211 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRvsIa~~Ll~~P~lllLDEPtsgL 211 (697)
++.. ++| ..|-+|++-....+++|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 12445555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 046969 212 DSASAFFVIQT-LRNIARD-GRTVISSIHQP 240 (697)
Q Consensus 212 D~~~a~~i~~~-L~~la~~-g~tvi~~~Hqp 240 (697)
|+.....+... ++.+.+. +.++|++||++
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 99999998888 7788776 89999999996
No 442
>PRK13695 putative NTPase; Provisional
Probab=99.13 E-value=8.3e-11 Score=115.47 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEP--SSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEP--tsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
..+||+|+.+..+++..+.+|+++++||| +.++| ..+++.+.++.+.|+++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 35999999999999999999999999995 33444 445677777777799999999983 56688999999999
Q ss_pred Ceeeee
Q 046969 257 GETVYF 262 (697)
Q Consensus 257 G~iv~~ 262 (697)
|++.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.13 E-value=4e-10 Score=111.18 Aligned_cols=146 Identities=22% Similarity=0.151 Sum_probs=97.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSK 149 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~ 149 (697)
++.|.||+|+|||||.--++-.... +| ..+.|+.= ..|..+.+.....+. ...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~------e~~~~~~~~~~~~~g----~~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTL------EESPEELIENAESLG----WDL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEEC------CCCHHHHHHHHHHcC----CCh
Confidence 3679999999999998655422111 11 12445542 225555555443332 111
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHH
Q 046969 150 EDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK------RLSIALEILTKPQLLFLDEPSSGLD---SASAFFVI 220 (697)
Q Consensus 150 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq------RvsIa~~Ll~~P~lllLDEPtsgLD---~~~a~~i~ 220 (697)
++ +...|+....|. .+..+|+||+| +.........+|+++++|||++.+| ......+.
T Consensus 54 ~~--------l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~ 120 (187)
T cd01124 54 ER--------LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIR 120 (187)
T ss_pred HH--------HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHH
Confidence 11 122343333333 33578999998 4444455567999999999999999 88888888
Q ss_pred HHHHHHHhCCCEEEEEeCCCcH--------HHHHhccceeeec
Q 046969 221 QTLRNIARDGRTVISSIHQPSS--------EVFALFDDLFLLS 255 (697)
Q Consensus 221 ~~L~~la~~g~tvi~~~Hqp~~--------~i~~l~D~v~lL~ 255 (697)
+.++.+++.|.|+|+++|.... .+..++|.++.|.
T Consensus 121 ~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 121 RLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9999998889999999998643 2577899999886
No 444
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.12 E-value=1.6e-08 Score=103.94 Aligned_cols=220 Identities=11% Similarity=-0.018 Sum_probs=133.9
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHhhCCCCc
Q 046969 386 SRDVGYYWARIAIYLVVSICVGTIFFDVGTGYTAILA-RISCGAFITGFMTFMSIGGFPSFIEEMK--IFYHEKLNGYYG 462 (697)
Q Consensus 386 ~Rd~~~~~~r~~~~i~~~l~iG~lf~~~~~~~~~i~~-r~~~~~f~~~~~~~~s~~~~p~~~~er~--v~~rE~~~g~Y~ 462 (697)
+|||.....-+.+-+++-++.+.+|-+-. +.+..+. -.+.+.+...+.+. +..--....||+ .+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAF--TGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 68998887777877777777777776521 1111111 11111111111111 111112334443 344433333 47
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHH
Q 046969 463 VTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVASLVPN---YLMGVVVGAG 539 (697)
Q Consensus 463 ~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia~~~p~---~~~a~~~~~~ 539 (697)
...|+++|++..++..++..+++. +++++.|++.....+ ..++..++....+.+++.+++++.++ .+.+..++..
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888877665554 556678988754433 22233333334445666666666643 4444667777
Q ss_pred HHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCCCCCCccCHHHHHhhhcCCccCchhhH
Q 046969 540 VLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMFPGEPKLKGEDIIKNTFGISIDRSKWW 619 (697)
Q Consensus 540 ~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~g~~~~~~~w~ 619 (697)
...+++++||.+.|.+.+|.| ++| +.+++|++|+.+++-.- +.+ +-+ ....|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~-lq~-i~~~~P~t~~~~~~r~~-~~~-----------------------~~~-~~~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTW-IKW-FVRVQPSSYATEALRQA-ATV-----------------------SVD-TFGAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccHH-HHH-HHHhCcHHHHHHHHHHH-HcC-----------------------CCC-hhhHHH
Confidence 788889999999999999985 899 99999999999976432 211 001 113577
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046969 620 DLSAIVVILISYRLLFFII 638 (697)
Q Consensus 620 ~~~il~~~~~~~~~l~~~~ 638 (697)
++++++++.+++..++...
T Consensus 209 ~~~~l~~~~~v~~~la~~~ 227 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAIR 227 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888777666543
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.05 E-value=8.8e-10 Score=118.25 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=95.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cCcC-CCeEEEEecCCC-CCCCCCHHHHHHH
Q 046969 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-TRVD-SGVLAYVTQENV-LLGTLTVRETITY 137 (697)
Q Consensus 61 vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-~~~~-~~~i~yv~Q~~~-l~~~lTV~E~l~~ 137 (697)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.++... .... ...+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 55678899999999999999999999999998764 5666665321 1111 112222221100 000
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046969 138 SAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAF 217 (697)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~ 217 (697)
.++- .-.+..+|-.+|+++++|||.+ .
T Consensus 204 ------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 204 ------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0111 1134456677999999999996 3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 218 FVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 218 ~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
++.+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 456667776543456799999975 56679999999999998888877654
No 446
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=7.1e-10 Score=135.09 Aligned_cols=77 Identities=29% Similarity=0.330 Sum_probs=68.5
Q ss_pred cCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccc
Q 046969 177 HLRGISGGEKKR------LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 177 ~~~~LSGGerqR------vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
.+..||||||++ +++|++++.+|+++++||||+|||+..+..+.+.|..++..+.|||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 456899999994 5556678899999999999999999999999999999887788999999996 46789999
Q ss_pred eeeec
Q 046969 251 LFLLS 255 (697)
Q Consensus 251 v~lL~ 255 (697)
++.|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99997
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=3.5e-09 Score=102.86 Aligned_cols=64 Identities=25% Similarity=0.418 Sum_probs=53.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
....-|.||-=---+. .=.++--+++||||-++|.+.-+..++..|+++++.|.-+|+.||.|-
T Consensus 126 sLh~~SHGEsf~~i~~-~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 126 SLHHMSHGESFLAIFH-NRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred chhhhccchHHHHHHH-HHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3445788986433333 334678899999999999999999999999999999999999999983
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.99 E-value=9.5e-09 Score=123.62 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=61.1
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHH---------HhccceeeecCCeeeeecCh
Q 046969 196 LTKPQLLFLDEPSSGL-DSASAFFVIQTLRNIARDGRTVISSIHQPSSEVF---------ALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 196 l~~P~lllLDEPtsgL-D~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~---------~l~D~v~lL~~G~iv~~G~~ 265 (697)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++|++||+|. ++. +.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999888999999999985 443 68999999999998776644
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.98 E-value=1.9e-09 Score=119.30 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=110.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. .+|+|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg-------------------~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG-------------------REVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc-------------------ccHHHH
Confidence 4688885 999999999999999999999999999988763 66665555321 366666
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL-------TKPQLLFLDEP 207 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll-------~~P~lllLDEP 207 (697)
+..... .-|+... ..+ .....-|.|+|+|+..+.+.+ .++-++++|+|
T Consensus 201 ~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 201 IRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 543211 1122110 111 123578999999999998888 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 208 SSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|+..|+. .+|-..+.+....|.+..+.+|.+ .++ +|.-...+|.+...+..
T Consensus 256 Tr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~---ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 256 TRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLL---ERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHH---HHhccCCCcceEEEEEE
Confidence 9999996 555555566555688988888853 344 44444578888766543
No 450
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.97 E-value=6.2e-08 Score=100.85 Aligned_cols=202 Identities=11% Similarity=0.043 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CC------Ch-HHH--HHHHHHHHHHHHHHHHHHHhh
Q 046969 372 KQLSTLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDV-GT------GY-TAI--LARISCGAFITGFMTFMSIGG 441 (697)
Q Consensus 372 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~-~~------~~-~~i--~~r~~~~~f~~~~~~~~s~~~ 441 (697)
++++.+++|.++...|||..+..-+++-++.-+++|.+|-.. +. +. .+. .--.|++.+...+..+. ++
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~~ 79 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--SS 79 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--hh
Confidence 678999999999999999999999999999999999888432 11 10 010 11112211111111111 11
Q ss_pred HHHHHHHHH--HHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 046969 442 FPSFIEEMK--IFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESL 519 (697)
Q Consensus 442 ~p~~~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl 519 (697)
+ ....||. .+.+=+... .+...+.+++++...-..++..++..++.+. .|.+.....+......+++......++
T Consensus 80 ~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 L-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred h-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 1222222 333333333 4778899999999988777776665554443 366655333443334444455566789
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC---CccccccccccccHHHHHHHHHH
Q 046969 520 MMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDL---PKLFWRYPISYLSYGSWAIQGAY 580 (697)
Q Consensus 520 ~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~i---P~~~w~w~~~yiS~~~ya~e~l~ 580 (697)
++++++++++......+.+.++.+++..||.+.+.+.+ |+ |++| +.++||+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~-~l~~-i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEAST-WLYW-ICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccH-HHHH-HHHhCcHHHHHHHHH
Confidence 99999999998777777777778888899999888666 65 3677 999999999998763
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.96 E-value=1.7e-09 Score=133.37 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=68.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhc
Q 046969 177 HLRGISGGEKKRLSIALEILT--------KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALF 248 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~--------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~ 248 (697)
.++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||++++|.+ ....++-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 457899999999999999995 8999999999999999999999999999998899999999974 3344555
Q ss_pred cceeeec
Q 046969 249 DDLFLLS 255 (697)
Q Consensus 249 D~v~lL~ 255 (697)
.+|.|-.
T Consensus 1025 ~qi~V~k 1031 (1047)
T PRK10246 1025 VQIKVKK 1031 (1047)
T ss_pred ceEEEEE
Confidence 5666654
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.94 E-value=5.3e-09 Score=99.68 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcH
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSS----------GLDSASAFFVIQTLRNIARDGRTVISSIHQPSS 242 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPts----------gLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~ 242 (697)
.+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888888999999999999994 455555566666655555569999999999754
No 453
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=2.7e-09 Score=134.66 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=65.0
Q ss_pred CccccCccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 046969 170 DTVIGNWHLRGISGGEKK------RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-----DGRTVISSIH 238 (697)
Q Consensus 170 d~~vg~~~~~~LSGGerq------RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-----~g~tvi~~~H 238 (697)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55554 23579999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CCcHHHHHhc
Q 046969 239 QPSSEVFALF 248 (697)
Q Consensus 239 qp~~~i~~l~ 248 (697)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 97 4666654
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.91 E-value=1.2e-08 Score=104.98 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=99.3
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 57 LLQGL-YGYAEPGRIMAIMGPSGSGKSTLLDSLA-GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 57 iL~~v-s~~i~~Gei~aI~GpsGsGKSTLL~~La-G~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-|+.+ .+=+++|+++.|.|++|+|||||...++ +.... | ..+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----------g-------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-----------G-------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-----------C-------CEEEEEEcCC------CHHHH
Confidence 45554 5669999999999999999999998875 21111 1 2355666532 34443
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT--KPQLLFLDEPSSG-- 210 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~--~P~lllLDEPtsg-- 210 (697)
+.-...+. ....+ .+. .|.-...+..+. .....|.++++.+....+++. +|+++++||||+.
T Consensus 69 ~~~~~~~g----~~~~~-------~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVK----IDISD-------FFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCC----CChhH-------HHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 33222221 11111 000 011111111111 112356788999999999998 9999999999965
Q ss_pred -CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcH------HHHHhccceeeec
Q 046969 211 -LDSASAFFVIQTLRNIARDGRTVISSIHQPSS------EVFALFDDLFLLS 255 (697)
Q Consensus 211 -LD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~------~i~~l~D~v~lL~ 255 (697)
.|......+++.++.+++.|.|+++++|++.. .+..++|-++.|+
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 44455555656677777789999999998642 1456677777775
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=4.2e-09 Score=128.56 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=66.8
Q ss_pred cCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-C-CEEEEEeCCCcHHHHHh
Q 046969 177 HLRGISGGEKKRLSI------ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-D-G-RTVISSIHQPSSEVFAL 247 (697)
Q Consensus 177 ~~~~LSGGerqRvsI------a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~-g-~tvi~~~Hqp~~~i~~l 247 (697)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+.... . | .|||++||++ +....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 457899999999975 4889999999999999999999999999999986543 3 3 4899999997 35589
Q ss_pred ccceeeec
Q 046969 248 FDDLFLLS 255 (697)
Q Consensus 248 ~D~v~lL~ 255 (697)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.88 E-value=1.1e-08 Score=105.74 Aligned_cols=136 Identities=30% Similarity=0.513 Sum_probs=87.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG-KKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSS 146 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG-~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 146 (697)
|++..|.||+|+|||||.-.++=-.. +|.=.+.+ ... .....+-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67899999999999999887763322 22211211 111 1123455655322
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 046969 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIAL----------------EILTKPQLLFLDEPSS- 209 (697)
Q Consensus 147 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~----------------~Ll~~P~lllLDEPts- 209 (697)
+.++..+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 23344556666666666655444433 2245555554443 235799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCc
Q 046969 210 -----GLDSASAFFVIQTLRNIARD-GRTVISSIHQPS 241 (697)
Q Consensus 210 -----gLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~ 241 (697)
.+|+.....+++.|++++++ |.|||++.|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999875 999999999863
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.87 E-value=1.4e-08 Score=102.13 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=43.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+|+++|..+|+++++|||. |..+...+ .+.+..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778888999999999996 55543333 345667999999999975 457789987774
No 458
>PRK15066 inner membrane transport permease; Provisional
Probab=98.86 E-value=2e-06 Score=89.90 Aligned_cols=240 Identities=17% Similarity=0.233 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHHH----HHh-hHH
Q 046969 371 WKQLSTLTRRSLVNMSRDVGY-YWARIAIYLVVSICVGTIFFDV-GTGYTAILARISCGAFITGFMTFM----SIG-GFP 443 (697)
Q Consensus 371 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~iG~lf~~~-~~~~~~i~~r~~~~~f~~~~~~~~----s~~-~~p 443 (697)
++-++.+.+|.++...||+.. ...-+++.++..+++|.++-.. +.. .++ + ...|++.+.+.+. ++. +..
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~~ 82 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999854 3333445556666666665321 110 111 0 1122222222111 111 112
Q ss_pred HHHHHHHH-HHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 046969 444 SFIEEMKI-FYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMV 522 (697)
Q Consensus 444 ~~~~er~v-~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ 522 (697)
.+.+++.. ..++-..---+...+.+++++...-..++..++...+.+...|.++. ....+...+++...+....+++
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 23333311 01111222357888999999988777666666555555544466543 2222222222222223345788
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCCCCCCccCHH
Q 046969 523 VASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMFPGEPKLKGE 602 (697)
Q Consensus 523 ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~ 602 (697)
++.+.++......+...++.+++..||.+.+.+.+|.+ ++| +.+++|++|..|++=.. +.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~-l~~-i~~~nPlt~~v~~~R~~-~~----------------- 220 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPF-WQG-VSKLNPIVYMVNAFRYG-FL----------------- 220 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHH-HHH-HHHHCcHHHHHHHHHHH-Hc-----------------
Confidence 88888887777777777888888999999999999974 677 99999999999976321 11
Q ss_pred HHHhhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046969 603 DIIKNTFGISIDRSKWWDLSAIVVILISYRLLFFIILKFKER 644 (697)
Q Consensus 603 ~vL~~~~g~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 644 (697)
|.+ ..+.|.++++++++.+++.+++....|..++
T Consensus 221 -------g~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 221 -------GIS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred -------CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 101 1235778889988888888777776654444
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.78 E-value=7.9e-09 Score=129.20 Aligned_cols=76 Identities=25% Similarity=0.349 Sum_probs=67.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcccee
Q 046969 177 HLRGISGGEKKRLSIALEIL----TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLF 252 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll----~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~ 252 (697)
.+..||||||+|++||++++ .+|++++|||||+|||+.....+.+.|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 45689999999999999984 57799999999999999999999999999875 478999999974 457899998
Q ss_pred eec
Q 046969 253 LLS 255 (697)
Q Consensus 253 lL~ 255 (697)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 764
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.76 E-value=2.8e-08 Score=111.68 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=94.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
.++++.+..++.|++++++||||+||||++..|++.+... .|. +.+++|.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999976431 231 2478888876 347899999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCC-----CEEEEeCCCCC
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKP-----QLLFLDEPSSG 210 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P-----~lllLDEPtsg 210 (697)
.+.+.+..- +........+......+|.+..+.+|.. .|.|.-.. .+.-..+++.++ .+|+||.++.+
T Consensus 306 r~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDT---aGr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 306 RIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLIDT---IGMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeCC---CCcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 998776521 1111122233344456777665555532 12222211 234455555555 68999999888
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 046969 211 LDSASAFFVIQTLRNIARDGRTVISSIH 238 (697)
Q Consensus 211 LD~~~a~~i~~~L~~la~~g~tvi~~~H 238 (697)
..+.+.++.....+.+=++.|+
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeC
Confidence 3345555555544544333333
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.71 E-value=1e-08 Score=113.46 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=45.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEecC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG-NVLFNGKKTR 110 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~~nG~~~~ 110 (697)
+.+|++||+.+++||+++|+|||||||||||+ +|+..+. +| +|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECC
Confidence 56899999999999999999999999999999 6776663 56 8999998763
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.68 E-value=3.6e-08 Score=120.33 Aligned_cols=77 Identities=27% Similarity=0.385 Sum_probs=66.9
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCcHHH
Q 046969 178 LRGISGGEKK------RLSIALEILTK-----P-QLLFLDEPSSGLDSASAFFVIQTLRNIARDGR-TVISSIHQPSSEV 244 (697)
Q Consensus 178 ~~~LSGGerq------RvsIa~~Ll~~-----P-~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~-tvi~~~Hqp~~~i 244 (697)
+..||||||+ |++++++++.+ | +++++||||++||+.....+++.|+.++..|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 89999988864 3 67999999999999999999999999987664 8999999973 4
Q ss_pred HHhccceeeecC
Q 046969 245 FALFDDLFLLSG 256 (697)
Q Consensus 245 ~~l~D~v~lL~~ 256 (697)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999963
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.67 E-value=3e-08 Score=124.14 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee
Q 046969 178 LRGISGGEKKRLSIALEILT----KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~----~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
+..||||||++++||.+++. .|++++||||++|||+.....+.+.|++++. +.++|++||++ .....||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeEe
Confidence 56899999999999999985 6799999999999999999999999999865 47899999997 46789999998
Q ss_pred ec
Q 046969 254 LS 255 (697)
Q Consensus 254 L~ 255 (697)
+.
T Consensus 1149 ~~ 1150 (1164)
T TIGR02169 1149 VT 1150 (1164)
T ss_pred EE
Confidence 85
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.62 E-value=9.1e-07 Score=80.94 Aligned_cols=118 Identities=31% Similarity=0.383 Sum_probs=77.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSS 146 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 146 (697)
+|..+.|.||+|+||||+++.|+..+.... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 467899999999999999999999876521 1344444432110 0000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 046969 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQ----- 221 (697)
Q Consensus 147 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~----- 221 (697)
.. ..........+++..+..++.+--.+|+++++||+..-.+.........
T Consensus 51 --------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------LI----------IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------hh----------hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 00 0000113467888888888888877899999999999999998887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 046969 222 -TLRNIARDGRTVISSIH 238 (697)
Q Consensus 222 -~L~~la~~g~tvi~~~H 238 (697)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22233345788999988
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.58 E-value=3.2e-07 Score=100.05 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+++.+|-.+|+++++||+. |+.++...++ .+..|.+|+.|+|-.+ .....+|++-|-
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 3567788899999999997 8888865444 3567999999999975 456788887663
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=6.1e-08 Score=107.57 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=111.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----------cCCCeEEEEecC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-----------VDSGVLAYVTQE 122 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-----------~~~~~i~yv~Q~ 122 (697)
..++|+++ +.+.+||.++|+|+||+|||||+++|+|..+++...-|.|-.+|++.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 999999999999999999999999999998775333466666665431 123468999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCC----HHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhC
Q 046969 123 NVLLGTLTVRETITYSAHLRLPSSMS----KEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 123 ~~l~~~lTV~E~l~~~~~l~~~~~~~----~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
+..+..+++.|++.+.+......... -+. ..+..+...++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Ds-ltr~a~A~REisl--------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDS-LTRYAMAQREIAL--------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecc-hhHHHhhhhHHHH---------------------------------
Confidence 99999999999998877654211100 000 0011111111111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHh---CC-CEEEEEeCCCcHHHH-HhccceeeecCCeeeee
Q 046969 199 PQLLFLDEP--SSGLDSASAFFVIQTLRNIAR---DG-RTVISSIHQPSSEVF-ALFDDLFLLSGGETVYF 262 (697)
Q Consensus 199 P~lllLDEP--tsgLD~~~a~~i~~~L~~la~---~g-~tvi~~~Hqp~~~i~-~l~D~v~lL~~G~iv~~ 262 (697)
.+.|| +-|-.+.....+-+++.+... .| .|.+-+..-|.+++- -.+|.+.=+-+|+++-.
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12344 236666666666666666532 23 577777766654433 25788888889999874
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.52 E-value=3.3e-08 Score=112.52 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=96.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEecC----cCCCeEEEEecCCCCCCCC
Q 046969 57 LLQGL-YGYAEPGRIMAIMGPSGSGKSTLLDSL--AGRLSRHVIMTGNVLFNGKKTR----VDSGVLAYVTQENVLLGTL 129 (697)
Q Consensus 57 iL~~v-s~~i~~Gei~aI~GpsGsGKSTLL~~L--aG~~~~~~~~~G~I~~nG~~~~----~~~~~i~yv~Q~~~l~~~l 129 (697)
-|+.+ .|=+.+|.++.|.||+|||||||..-. .|....+ +.-+++...... ...+..|+-.|+..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 35664 567899999999999999999998766 3443321 233444332210 00112222222110000
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 046969 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA--LEILTKPQLLFLDEP 207 (697)
Q Consensus 130 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa--~~Ll~~P~lllLDEP 207 (697)
++.+ +. .... .....+++.+++.+..+... +.+|+|++|||.|+ .++..+|+..
T Consensus 84 ----~l~~---~~----~~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LD----ASPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Ee----cCch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 00 0000 00011233445554444443 46999999999999 6666665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHH-------H-HHhccceeeec
Q 046969 208 SSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSE-------V-FALFDDLFLLS 255 (697)
Q Consensus 208 tsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~-------i-~~l~D~v~lL~ 255 (697)
...+..+.+.++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986421 2 45789999986
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.50 E-value=1.8e-06 Score=104.70 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=56.7
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH--hccceeeecCCeeee
Q 046969 191 IALEILTKPQLLFLDEPSSGL-DSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA--LFDDLFLLSGGETVY 261 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgL-D~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~--l~D~v~lL~~G~iv~ 261 (697)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|. ++.+ .++.++-....++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCcceec
Confidence 567788999999999999999 799999999999999888999999999985 4554 345554455555543
No 469
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.45 E-value=2.3e-05 Score=81.23 Aligned_cols=153 Identities=16% Similarity=0.228 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH
Q 046969 464 TVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSYFAFFTMNIFLCISVIESLMMVVA-SLVPNYLMGVVVGAGVLG 542 (697)
Q Consensus 464 ~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~sl~~~ia-~~~p~~~~a~~~~~~~~~ 542 (697)
..+++++.+...-...+...+...+..+..|... ...+..+...+.+......+++.+++ ....+...+..++..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5667777777766666666666666666666332 23344444444445555566777555 355777888888888888
Q ss_pred HHHHhcccccCCCCCCccccccccccccHHHHHHHHHHHhhhCCCccCCCCCCCCccCHHHHHhhhcCCccCchhhHHHH
Q 046969 543 IIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAYKNDFLGVEFDPMFPGEPKLKGEDIIKNTFGISIDRSKWWDLS 622 (697)
Q Consensus 543 ~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~g~~~~~~~w~~~~ 622 (697)
+++.++|.+.|.+.+|. +.+| +.++.|.+|+.+++-.....+. . ..+.|.+++
T Consensus 210 ~~~~l~g~~~p~~~~p~-~~~~-i~~~~P~t~~~~~~~~~~~~~~------------------------~-~~~~~~~~~ 262 (286)
T COG0842 210 PLGFLSGVFFPLELLPA-WLQG-ISYINPLTYAIDALRYVYLGGW------------------------R-NDGIWISLL 262 (286)
T ss_pred HHHHHccccCchhhhHH-HHHH-HHHHccHHHHHHHHHHHHhCCC------------------------c-hhhHHHHHH
Confidence 89999999999999998 4788 9999999999998754332110 1 112677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046969 623 AIVVILISYRLLFFIILKFKER 644 (697)
Q Consensus 623 il~~~~~~~~~l~~~~L~~~~~ 644 (697)
+++++.+++.+++...+|.+++
T Consensus 263 ~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 263 ILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999888887776554
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.44 E-value=5.8e-07 Score=89.39 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=60.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-Cc-CCCeEEEEecCC--CCCCCCCHH
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT-RV-DSGVLAYVTQEN--VLLGTLTVR 132 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~-~~-~~~~i~yv~Q~~--~l~~~lTV~ 132 (697)
..+=+.+.+++|+.++|+||||||||||+++|+|.++++ .|.|.+++... .. ....++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 445556678999999999999999999999999998864 78999987542 11 234566666554 345667888
Q ss_pred HHHHHHhh
Q 046969 133 ETITYSAH 140 (697)
Q Consensus 133 E~l~~~~~ 140 (697)
+.+..+.+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 87776544
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.44 E-value=5e-08 Score=99.92 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046969 57 LLQGL-YGYAEPGRIMAIMGPSGSGKSTLLDSLA 89 (697)
Q Consensus 57 iL~~v-s~~i~~Gei~aI~GpsGsGKSTLL~~La 89 (697)
-|+.+ .+=+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35663 5679999999999999999999988655
No 472
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.44 E-value=4.7e-07 Score=110.75 Aligned_cols=77 Identities=31% Similarity=0.415 Sum_probs=70.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhc
Q 046969 177 HLRGISGGEKKRLSIALEIL------TK--PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALF 248 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll------~~--P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~ 248 (697)
.+..|||||+-.++||.+|+ .+ -++|||||||..||+.+...++++|..+...+++|+++||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887776 45 699999999999999999999999999999899999999995 688999
Q ss_pred cceeeec
Q 046969 249 DDLFLLS 255 (697)
Q Consensus 249 D~v~lL~ 255 (697)
|.++.+.
T Consensus 890 ~~~i~V~ 896 (908)
T COG0419 890 DVRIRVK 896 (908)
T ss_pred CeEEEEE
Confidence 9999996
No 473
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=3.2e-07 Score=100.69 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 180 GISGGEKKRLSIALEILT---------KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll~---------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
-+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |.+|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999764 779999999963
No 474
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.42 E-value=3.2e-06 Score=94.64 Aligned_cols=172 Identities=20% Similarity=0.217 Sum_probs=104.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-------------CCCeEEEEe
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-------------DSGVLAYVT 120 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-------------~~~~i~yv~ 120 (697)
..++++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|..-+. .++.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 999999999999999999999999999998764 5555554443210 012223333
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH-HHHHHHHHHHHHhhCC
Q 046969 121 QENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG-GEKKRLSIALEILTKP 199 (697)
Q Consensus 121 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRvsIa~~Ll~~P 199 (697)
+-+. ++.+- .+. ..-... +.+...+.|- |.++ ....++- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r------~~~-----~~~a~t-~AE~frd~G~----~Vll---~~DslTr~A~A~R-----Eis--- 273 (440)
T TIGR01026 226 TSDQ-----SPLLR------LKG-----AYVATA-IAEYFRDQGK----DVLL---LMDSVTRFAMAQR-----EIG--- 273 (440)
T ss_pred CCCC-----CHHHH------HHH-----HHHHHH-HHHHHHHCCC----CEEE---EEeChHHHHHHHH-----HHH---
Confidence 3221 11110 000 001111 2222223332 2211 0112221 11111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 200 QLLFLDEP--SSGLDSASAFFVIQTLRNIARDGR-------TVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 200 ~lllLDEP--tsgLD~~~a~~i~~~L~~la~~g~-------tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
+.+.|| +.|+|+.....+-+.+.+....+. ||++..|+.. ..++|++.-+.+|+++..+...
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchh
Confidence 234675 559999999999999999887666 8888888864 3478999999999999987754
No 475
>PRK14079 recF recombination protein F; Provisional
Probab=98.41 E-value=4.4e-07 Score=99.13 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccc
Q 046969 180 GISGGEKKRLSIALEIL---------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 180 ~LSGGerqRvsIa~~Ll---------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.| ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888653 24555555543 57899
Q ss_pred eeeecCCeeeeec
Q 046969 251 LFLLSGGETVYFG 263 (697)
Q Consensus 251 v~lL~~G~iv~~G 263 (697)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999998875433
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=3.5e-07 Score=91.62 Aligned_cols=112 Identities=15% Similarity=0.247 Sum_probs=66.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhh-ccCCCCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAH-LRLPSSMS 148 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~ 148 (697)
+++|.||||||||||.++|++.+. .|. +.++.+|+.+ ..++..+....... ...|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 579999999999999999999862 122 3345555433 22333333322111 11122121
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 149 KEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 149 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
.+...+.+..+...+..+..+ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 123344555555543333322 3577787776555 5678999999999999986
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.28 E-value=1.5e-06 Score=105.01 Aligned_cols=138 Identities=22% Similarity=0.229 Sum_probs=85.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
..|-+|+++. +.+.++.|.|||++||||+|+.++-..--. ..| .|||-+..-+ .+.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a~i---~~~d- 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESARI---GIVD- 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------CceeccceEe---cccC-
Confidence 3466777777 678899999999999999999987432000 011 1333221111 1101
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCC---CC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLLFLDEP---SS 209 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~lllLDEP---ts 209 (697)
.+...+|- .|.. ..|.|-=+.-...++..|- ++++++++||| |+
T Consensus 652 -----------------------~I~triga---~d~i-----~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGA---SDDL-----ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCc---cccc-----ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 01111121 1111 2356766666666666554 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccc
Q 046969 210 GLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
.+|..+ .....++.+.+. |.++|++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 888444 345566666665 58999999994 67788876
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=4.6e-06 Score=104.65 Aligned_cols=164 Identities=22% Similarity=0.318 Sum_probs=90.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHH
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYS 138 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 138 (697)
.-+++..+.+++++|.|++|+|||||++++++.+... ..|.+++++..+...... +-.++... .+...
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~--~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEI--YSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhh--cccccccc-------cchhH-
Confidence 3346677889999999999999999999998876543 478898876322110000 00000000 00000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 046969 139 AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFF 218 (697)
Q Consensus 139 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~ 218 (697)
.-.++.+.++++..++. + .. .++.|+|+ ..++-+++||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~-----~~-~~~~~~~L------~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------I-----YH-LGAMEERL------KHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------c-----CC-HHHHHHHH------hCCeEEEEEeCC----CCH---H
Confidence 00122233333333331 1 11 25666663 345567788983 433 3
Q ss_pred HHHHHHHHH---hCCCEEEEEeCCCcHHHHHh-ccceeeecCCeeeeecChhhHHHHHHhcCC
Q 046969 219 VIQTLRNIA---RDGRTVISSIHQPSSEVFAL-FDDLFLLSGGETVYFGEAKLAVEFFAEAGF 277 (697)
Q Consensus 219 i~~~L~~la---~~g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 277 (697)
.++.|+... ..|.+||+|||+.. .+... +|+++-+. .=+.+++.+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v~------~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEVC------LPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEec------CCCHHHHHHHHHHHhc
Confidence 344444433 35889999999963 33222 56665553 1134578888876544
No 479
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.25 E-value=2.9e-06 Score=94.50 Aligned_cols=82 Identities=23% Similarity=0.196 Sum_probs=64.0
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC---Eec
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG---KKT 109 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG---~~~ 109 (697)
...++.++++..+.+ ...+++.++ .+.+||.++|+||||+||||||++|++..+++ .|.|.+.| +++
T Consensus 137 p~~~~r~~v~~~l~T------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLRT------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcCC------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccH
Confidence 345777788777642 367888886 89999999999999999999999999998774 78888865 432
Q ss_pred C---------cCCCeEEEEecCCC
Q 046969 110 R---------VDSGVLAYVTQENV 124 (697)
Q Consensus 110 ~---------~~~~~i~yv~Q~~~ 124 (697)
. ..++.+++|+|.|.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 1 11357999999874
No 480
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.19 E-value=4.9e-05 Score=91.97 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 194 EILTKPQLLFLDEPSSGLD-SASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsgLD-~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88899999999999888999999999984
No 481
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.18 E-value=4.3e-05 Score=80.27 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=84.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
.-..|+++.+-+.+|+++.|.|++|+|||||+..++-..... .| ..+.|+.-+. +..+
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g-------------~~vl~iS~E~------~~~~ 73 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HG-------------VRVGTISLEE------PVVR 73 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cC-------------ceEEEEEccc------CHHH
Confidence 345789998999999999999999999999998887543210 01 2244444322 2222
Q ss_pred HHHHHhh----ccCC-----CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEE
Q 046969 134 TITYSAH----LRLP-----SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLL 202 (697)
Q Consensus 134 ~l~~~~~----l~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~ll 202 (697)
.+..... .... ...+.+ .++++++.+.-.+.. .+-+ ....++ -.+-+..++.++ .+|+++
T Consensus 74 ~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l--~i~d-~~~~~~--~~~i~~~i~~~~~~~~~~~v 144 (271)
T cd01122 74 TARRLLGQYAGKRLHLPDTVFIYTLE----EFDAAFDEFEGTGRL--FMYD-SFGEYS--MDSVLEKVRYMAVSHGIQHI 144 (271)
T ss_pred HHHHHHHHHhCCCcccCCccccccHH----HHHHHHHHhcCCCcE--EEEc-CCCccC--HHHHHHHHHHHHhcCCceEE
Confidence 2221111 1110 011222 233333333110000 0000 001111 234445555555 379999
Q ss_pred EEeCCCCCCCH-------H-HHHHHHHHHHHHHhC-CCEEEEEeCCC
Q 046969 203 FLDEPSSGLDS-------A-SAFFVIQTLRNIARD-GRTVISSIHQP 240 (697)
Q Consensus 203 lLDEPtsgLD~-------~-~a~~i~~~L~~la~~-g~tvi~~~Hqp 240 (697)
++|..+.-.+. . ....++..|++++++ |.||++++|-.
T Consensus 145 vID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 145 IIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred EECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 99998764432 1 234677778888764 89999998753
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.14 E-value=1.1e-06 Score=86.72 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=44.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----CCeEEEEecCCCCCCCCCHHHHHHH
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD----SGVLAYVTQENVLLGTLTVRETITY 137 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~ 137 (697)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... +...++.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998754 46677654211 1124555665544555555555554
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.14 E-value=3e-06 Score=107.14 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 178 LRGISGGEKKRLS----IALE--------ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 178 ~~~LSGGerqRvs----Ia~~--------Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...+++.++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999888 78999999873
No 484
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.06 E-value=3.6e-05 Score=71.04 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCCc
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-----DGRTVISSIHQPS 241 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-----~g~tvi~~~Hqp~ 241 (697)
++..........++.++++||.-.. +......+.+.+..... .+.++|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566778999999998765 56667778888877653 4678889988653
No 485
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.04 E-value=0.00011 Score=70.66 Aligned_cols=129 Identities=10% Similarity=-0.058 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 046969 447 EEMKIFYHEKLNGYYGVTVYILSNFLSSFPFLVAISLMSSSITFFMVKFRPGFSY--FAFFTMNIFLCISVIESLMMVVA 524 (697)
Q Consensus 447 ~er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~--f~~f~l~~~~~~~~~~sl~~~ia 524 (697)
.|+.++.|-+..-. +.+.|+++|++...-..++..++..++.++ .|.+...+- .+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777766665 789999999999999998888877777754 488776321 22222222222333344555555
Q ss_pred HhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHHH
Q 046969 525 SLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDLPKLFWRYPISYLSYGSWAIQGAY 580 (697)
Q Consensus 525 ~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~iP~~~w~w~~~yiS~~~ya~e~l~ 580 (697)
...++..... ....++.+++..+|.+.|.+.+|+| .+| +.+++|++|+.+++-
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~w-lq~-ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDW-AQP-LIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHH-HHH-HHhhCCccHHHHHHH
Confidence 5555544333 3355667777888888999999984 787 999999999999874
No 486
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.03 E-value=0.00014 Score=88.15 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=42.1
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 196 LTKPQLLFLDEPSSGLD-SASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 196 l~~P~lllLDEPtsgLD-~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999985
No 487
>PRK01889 GTPase RsgA; Reviewed
Probab=98.03 E-value=8.6e-06 Score=89.22 Aligned_cols=105 Identities=26% Similarity=0.358 Sum_probs=69.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--cCCCeEEEEecCCCCCCCCCHHHHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--VDSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
++.+.-.+++|++++|+|+||+|||||+|+|+|...+. +|+|.+++.... ...+.+.+++|+..++++ ....++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 44455567799999999999999999999999988763 899999875421 223568999998888865 344444
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCc
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADT 171 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~ 171 (697)
.+... . .........+.++.+.+...+|.+.
T Consensus 261 ~l~~~----~-~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 261 QLWDA----E-DGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred cccCc----h-hhHHHhHHHHHHHHccCCCCCCCCC
Confidence 43210 0 0011112234455555666666654
No 488
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.02 E-value=0.0015 Score=67.73 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046969 375 STLTRRSLVNMSRDVGYYWARIAIYLVVSICVGTIFFDV----GTGYTAILARISCGAFITGFMTFMSIGGFPSFIEEMK 450 (697)
Q Consensus 375 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~~----~~~~~~i~~r~~~~~f~~~~~~~~s~~~~p~~~~er~ 450 (697)
+.+.||.++...|.|..+..-.+..++.|+.. ..|... ..+.++... +|......+ +-.+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~-----~f~~~~~~~--~~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP-----FFSLAPWVF--LFLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH-----HHHHHHHHH--HHHHHHH--HHH
Confidence 46889999999999998876666656555332 222110 111111111 111110111 1112222 345
Q ss_pred HHHHHhhCCCC--------chHHHHHHHHHHHHHHHHHHHH---hhhhhhhcccc--ccCCHHHHHHHHHHHHHHHHHHH
Q 046969 451 IFYHEKLNGYY--------GVTVYILSNFLSSFPFLVAISL---MSSSITFFMVK--FRPGFSYFAFFTMNIFLCISVIE 517 (697)
Q Consensus 451 v~~rE~~~g~Y--------~~~~y~la~~l~~lP~~~~~~~---if~~I~Y~m~g--l~~~~~~f~~f~l~~~~~~~~~~ 517 (697)
.+.+||++|.. +...++++|.++-+-+.++..+ ++....++... -..+.+.++...+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 67788888764 4678999999998765443332 12222222111 11234444433344444455667
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC--CccccccccccccHHHHHH
Q 046969 518 SLMMVVASLVPNYLMGVVVGAGVLGIIMMTSGFFRLLPDL--PKLFWRYPISYLSYGSWAI 576 (697)
Q Consensus 518 sl~~~ia~~~p~~~~a~~~~~~~~~~~~lfsGf~i~~~~i--P~~~w~w~~~yiS~~~ya~ 576 (697)
++|.++++++.|...|..++.+...+ ++.|+-. ..++ |.+ ..| +.|+||..|-.
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~-~~~-l~~~sp~~~~~ 207 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGS-AYT-ISELGLSYHYE 207 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhH-HHH-HHHcCHHHHHH
Confidence 99999999999988886655433222 2222211 2333 432 455 89999866643
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.01 E-value=6.7e-06 Score=66.62 Aligned_cols=36 Identities=44% Similarity=0.624 Sum_probs=28.7
Q ss_pred eceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 59 QGLYGYAEP-GRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 59 ~~vs~~i~~-Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
++.++.+.+ |++++|.|||||||||||++|.=.+-+
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 445667765 579999999999999999998765543
No 490
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.98 E-value=1.5e-05 Score=69.95 Aligned_cols=48 Identities=40% Similarity=0.555 Sum_probs=37.3
Q ss_pred CCCCCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046969 178 LRGISGGEK-KRLSIALEIL------T------KPQLLFLDEPSSGLDSASAFFVIQTLRN 225 (697)
Q Consensus 178 ~~~LSGGer-qRvsIa~~Ll------~------~P~lllLDEPtsgLD~~~a~~i~~~L~~ 225 (697)
..++||||| ..+.++.++. . .|++++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 358999999 4455444332 2 3799999999999999999999999875
No 491
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.94 E-value=1.7e-05 Score=75.46 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046969 179 RGISGGEKKRLSIALEI-----LTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~L-----l~~P~lllLDEPtsgLD~~~a~~i~~~L~~l 226 (697)
..++++++++.....+. ...|+++ |+|++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 45789998887666553 2345555 99999999999999988764
No 492
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.93 E-value=4.6e-05 Score=83.46 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=72.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----CCeEEEEecCCCCCCCCCHHHHHHHHhhc
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD----SGVLAYVTQENVLLGTLTVRETITYSAHL 141 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 141 (697)
++|.+++|.||+||||||+|++|.+.+.+.....+.|.....++... ....+.+.|... +. +..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~~----~~~------ 199 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--PR----HLN------ 199 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--cc----ccc------
Confidence 58999999999999999999999998643211123454433332210 111234444321 00 000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 046969 142 RLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQ 221 (697)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~ 221 (697)
++..+ +-.+|-.+|+++++.|-- |..++...++
T Consensus 200 --------------------------------------~~~~~------l~~aLR~~Pd~i~vGEiR---d~et~~~al~ 232 (358)
T TIGR02524 200 --------------------------------------NFAAG------VRNALRRKPHAILVGEAR---DAETISAALE 232 (358)
T ss_pred --------------------------------------CHHHH------HHHHhccCCCEEeeeeeC---CHHHHHHHHH
Confidence 01111 112455689999999843 5555444333
Q ss_pred HHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 222 TLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 222 ~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
.+..|..|+.|.|-.+ +.+..+|++-+
T Consensus 233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~~ 259 (358)
T TIGR02524 233 ----AALTGHPVYTTLHSSG--VAETIRRLVGS 259 (358)
T ss_pred ----HHHcCCcEEEeeccCC--HHHHHHHHHHh
Confidence 3556888999999864 56777777654
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.89 E-value=1e-05 Score=81.82 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=26.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
++|++++|.||||||||||+++|++.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999999865
No 494
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.88 E-value=0.00025 Score=78.08 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHh-CCCEEEEEeCCCcH
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGL-----DSASAFFV----------IQTLRNIAR-DGRTVISSIHQPSS 242 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgL-----D~~~a~~i----------~~~L~~la~-~g~tvi~~~Hqp~~ 242 (697)
..=||-.-|=.+|..||=...++||+||=||+- |...+..| ++.++.+.+ .|.+.|+++=- +.
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sg 399 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SG 399 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-ch
Confidence 357999999999999999999999999999974 33333333 556677754 58877777755 57
Q ss_pred HHHHhccceeeecCCee
Q 046969 243 EVFALFDDLFLLSGGET 259 (697)
Q Consensus 243 ~i~~l~D~v~lL~~G~i 259 (697)
+.+..+|+|++|++=+.
T Consensus 400 dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhHhhCCEEEEecCccc
Confidence 88999999999987543
No 495
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.88 E-value=3.4e-05 Score=90.39 Aligned_cols=111 Identities=22% Similarity=0.280 Sum_probs=70.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH--HHHHHh
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHV-----IMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE--TITYSA 139 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E--~l~~~~ 139 (697)
..+.++|.||||+|||||.+++.+..++.. ...+-|.+||..... ..++ +-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC-
Confidence 345799999999999999999998764310 012335555543210 0111 11111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 046969 140 HLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFV 219 (697)
Q Consensus 140 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i 219 (697)
.. .+...+.+.+.++..|+.+..+..+ ..+||| +||||| +..||...+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 1112233445577788877666654 468888 999999 799999999999
Q ss_pred HHHHHH
Q 046969 220 IQTLRN 225 (697)
Q Consensus 220 ~~~L~~ 225 (697)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888875
No 496
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.88 E-value=0.00022 Score=70.51 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 046969 155 HVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLS--IALEILT-KPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229 (697)
Q Consensus 155 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvs--Ia~~Ll~-~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~ 229 (697)
.+.+.++..++.- -.+++ ....+++||++++. ++..+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 33468999999977 4444433 34443 99999999999999999987764
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.87 E-value=2.2e-05 Score=88.64 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=44.1
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCcH-------HHHHhccceeeecCCe
Q 046969 197 TKPQLLFLDEPSSG----LD-----SASAFFVIQTLRNIAR-DGRTVISSIHQPSS-------EVFALFDDLFLLSGGE 258 (697)
Q Consensus 197 ~~P~lllLDEPtsg----LD-----~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~-------~i~~l~D~v~lL~~G~ 258 (697)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|++++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987652 11 2234556667777776 59999999997432 2567899999998654
No 498
>PRK08149 ATP synthase SpaL; Validated
Probab=97.86 E-value=1.9e-05 Score=87.88 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=55.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------CCCeEEEEecCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---------DSGVLAYVTQEN 123 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---------~~~~i~yv~Q~~ 123 (697)
.++++++ +.+.+||.++|+|+||+|||||+++|++...++..+-|.|-.+|++... ..+++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 5799999 9999999999999999999999999999887765456999999987521 124567776543
No 499
>PRK13764 ATPase; Provisional
Probab=97.85 E-value=0.0001 Score=85.33 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=49.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------------CCcHHHHHhccceeeecCCee
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH---------------QPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~H---------------qp~~~i~~l~D~v~lL~~G~i 259 (697)
|..+|+++++||.-..-| ++.+..++..|..++.|.| +. ..+...+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 678999999999985332 4444455556888999999 65 367789999999999999
Q ss_pred --eeecChh
Q 046969 260 --VYFGEAK 266 (697)
Q Consensus 260 --v~~G~~~ 266 (697)
+|.+...
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7777643
No 500
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.84 E-value=4.4e-05 Score=85.26 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=69.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC---EecC--------cCCCeEEEE----
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG---KKTR--------VDSGVLAYV---- 119 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG---~~~~--------~~~~~i~yv---- 119 (697)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.| ++.. ......+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4689998 999999999999999999999999999987432 246777755 3321 011234444
Q ss_pred -ecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 046969 120 -TQENV--LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166 (697)
Q Consensus 120 -~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 166 (697)
+|++. +.+.+ +..++.-..+.+........+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 77753 34433 444443322222111123345667788889998884
Done!