Query 046969
Match_columns 697
No_of_seqs 441 out of 3082
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.7E-48 2.6E-52 415.8 28.9 220 35-269 24-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 1.2E-47 4E-52 393.4 27.0 219 36-267 2-231 (235)
3 3rlf_A Maltose/maltodextrin im 100.0 1.5E-47 5.3E-52 415.9 29.4 216 35-269 3-222 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 7.6E-48 2.6E-52 415.6 26.7 216 35-269 4-227 (359)
5 2olj_A Amino acid ABC transpor 100.0 2.9E-47 1E-51 396.4 28.4 216 35-269 24-247 (263)
6 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-47 5.8E-52 400.5 26.0 217 35-269 7-232 (275)
7 1b0u_A Histidine permease; ABC 100.0 2.7E-47 9.1E-52 396.8 27.3 215 35-268 6-240 (262)
8 2pcj_A ABC transporter, lipopr 100.0 3.8E-47 1.3E-51 386.8 27.7 211 35-265 4-223 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 8.1E-47 2.8E-51 391.7 28.3 218 34-270 14-235 (256)
10 1z47_A CYSA, putative ABC-tran 100.0 1E-46 3.4E-51 406.9 29.1 220 32-269 11-234 (355)
11 2it1_A 362AA long hypothetical 100.0 1.5E-46 5.1E-51 406.8 28.6 216 35-269 3-222 (362)
12 2yyz_A Sugar ABC transporter, 100.0 1.3E-46 4.3E-51 407.0 27.3 216 35-269 3-222 (359)
13 1g29_1 MALK, maltose transport 100.0 3E-46 1E-50 406.4 30.3 216 35-269 3-228 (372)
14 1g6h_A High-affinity branched- 100.0 6.6E-47 2.3E-51 392.8 23.3 217 35-267 7-239 (257)
15 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-46 6.4E-51 405.5 27.6 216 35-269 3-229 (353)
16 1ji0_A ABC transporter; ATP bi 100.0 1.9E-46 6.7E-51 385.5 25.7 214 35-268 6-226 (240)
17 4g1u_C Hemin import ATP-bindin 100.0 3.9E-46 1.3E-50 388.7 26.5 214 34-268 10-235 (266)
18 1v43_A Sugar-binding transport 100.0 2.5E-46 8.5E-51 406.5 25.9 216 35-269 11-230 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-45 4.1E-50 398.1 25.4 210 36-268 2-215 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 2.4E-45 8.1E-50 377.2 24.5 210 36-269 2-215 (240)
21 2yz2_A Putative ABC transporte 100.0 2.4E-45 8.3E-50 382.9 23.8 221 35-270 2-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-45 8.2E-50 379.6 22.2 216 35-266 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 2.9E-45 1E-49 384.6 20.6 219 34-268 20-250 (279)
24 2nq2_C Hypothetical ABC transp 100.0 5.1E-44 1.7E-48 370.2 27.6 210 35-268 4-215 (253)
25 2zu0_C Probable ATP-dependent 100.0 2.5E-44 8.6E-49 375.4 25.2 221 34-269 19-253 (267)
26 3nh6_A ATP-binding cassette SU 100.0 5.4E-44 1.8E-48 379.0 23.8 213 35-270 53-277 (306)
27 2qi9_C Vitamin B12 import ATP- 100.0 8E-44 2.7E-48 367.7 23.7 205 35-268 4-220 (249)
28 2ixe_A Antigen peptide transpo 100.0 2.8E-44 9.5E-49 375.8 20.0 216 35-269 16-244 (271)
29 2ff7_A Alpha-hemolysin translo 100.0 5.8E-44 2E-48 368.5 22.1 213 34-268 6-230 (247)
30 1mv5_A LMRA, multidrug resista 100.0 6.7E-44 2.3E-48 367.2 20.8 213 36-269 2-225 (243)
31 1sgw_A Putative ABC transporte 100.0 6.4E-44 2.2E-48 360.3 19.0 201 32-255 7-207 (214)
32 2pjz_A Hypothetical protein ST 100.0 9.3E-43 3.2E-47 362.5 21.9 208 36-269 2-214 (263)
33 2ghi_A Transport protein; mult 100.0 2.4E-42 8.3E-47 359.0 23.4 214 34-269 16-241 (260)
34 2pze_A Cystic fibrosis transme 100.0 4.2E-42 1.4E-46 350.7 21.5 204 35-269 6-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 2.3E-42 7.7E-47 377.6 17.2 213 34-269 18-241 (390)
36 2cbz_A Multidrug resistance-as 100.0 7.5E-42 2.6E-46 350.6 20.0 207 35-269 3-216 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 1.7E-40 5.9E-45 382.5 24.5 214 35-269 341-566 (582)
38 3b60_A Lipid A export ATP-bind 100.0 1.5E-40 5.1E-45 383.0 23.3 215 35-270 341-567 (582)
39 4a82_A Cystic fibrosis transme 100.0 1.6E-40 5.3E-45 382.5 22.9 215 34-270 338-564 (578)
40 2yl4_A ATP-binding cassette SU 100.0 1.1E-40 3.9E-45 384.9 21.8 216 36-269 342-569 (595)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.6E-40 5.5E-45 382.8 22.5 215 34-270 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 3.7E-40 1.2E-44 380.7 18.9 213 35-270 354-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.6E-39 5.4E-44 342.6 17.7 199 35-269 40-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 5.5E-39 1.9E-43 399.4 21.7 217 35-270 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 7.2E-38 2.5E-42 389.4 23.5 215 35-270 415-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 1.4E-36 4.6E-41 377.1 26.7 217 35-270 387-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.1E-36 3.7E-41 378.0 22.3 221 35-270 1030-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 9.5E-36 3.2E-40 342.9 23.1 206 33-270 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-35 3.6E-40 338.8 20.7 206 33-270 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.4E-35 1.2E-39 334.1 22.1 206 33-268 267-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 8.3E-34 2.8E-38 326.4 20.6 192 55-270 360-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 5.6E-33 1.9E-37 330.7 24.2 201 32-270 432-635 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 9.6E-34 3.3E-38 331.4 17.2 208 54-269 30-297 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 2.9E-34 9.8E-39 330.6 11.2 181 56-258 106-305 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-34 1.2E-38 326.3 11.8 195 36-258 21-235 (538)
56 2iw3_A Elongation factor 3A; a 100.0 4.8E-33 1.6E-37 331.4 17.1 208 34-264 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4E-32 1.4E-36 317.7 19.2 195 54-268 334-638 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.9E-31 2E-35 302.7 13.3 207 35-262 69-302 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 7.4E-31 2.5E-35 298.4 12.2 174 65-261 22-217 (538)
60 3pih_A Uvrabc system protein A 100.0 9.3E-29 3.2E-33 294.3 23.7 199 55-269 597-901 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 3.2E-29 1.1E-33 296.0 18.2 207 34-268 501-825 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 5.7E-29 2E-33 294.2 17.9 208 34-269 628-941 (972)
63 2ygr_A Uvrabc system protein A 100.0 1.3E-28 4.3E-33 292.3 17.5 208 34-269 646-959 (993)
64 4aby_A DNA repair protein RECN 99.9 1.2E-27 4E-32 263.7 18.1 204 55-263 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.2E-30 7.6E-35 289.1 -7.4 185 59-268 129-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 8.9E-25 3E-29 237.6 16.2 83 177-261 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 5.5E-28 1.9E-32 242.8 -13.4 142 53-241 11-159 (208)
68 1e69_A Chromosome segregation 99.9 6.9E-24 2.4E-28 226.7 14.4 87 178-267 217-310 (322)
69 4gp7_A Metallophosphoesterase; 99.9 7.7E-25 2.6E-29 212.8 3.6 142 60-240 1-159 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 2.3E-26 7.7E-31 252.8 -10.1 177 55-258 36-255 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 3.3E-26 1.1E-30 229.0 -14.2 181 53-255 7-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 6.5E-23 2.2E-27 200.9 7.5 147 70-261 2-159 (178)
73 2v9p_A Replication protein E1; 99.9 1.9E-25 6.4E-30 236.3 -14.3 168 36-274 102-270 (305)
74 3b9q_A Chloroplast SRP recepto 99.8 8.7E-23 3E-27 216.3 -0.6 173 58-260 90-285 (302)
75 2vf7_A UVRA2, excinuclease ABC 99.8 1.1E-20 3.8E-25 223.2 16.0 110 151-268 355-473 (842)
76 3sop_A Neuronal-specific septi 99.8 3E-23 1E-27 216.4 -6.8 145 70-240 4-150 (270)
77 2pt7_A CAG-ALFA; ATPase, prote 99.8 9E-22 3.1E-26 211.0 2.1 131 57-260 160-293 (330)
78 1z6g_A Guanylate kinase; struc 99.8 2.8E-24 9.6E-29 217.1 -17.4 175 55-253 10-206 (218)
79 3qkt_A DNA double-strand break 99.8 7.6E-20 2.6E-24 196.7 15.5 77 177-255 245-327 (339)
80 2o5v_A DNA replication and rep 99.8 7.2E-20 2.5E-24 198.0 15.2 84 177-268 261-354 (359)
81 2og2_A Putative signal recogni 99.8 6.4E-22 2.2E-26 213.8 -1.1 172 59-260 148-342 (359)
82 2dpy_A FLII, flagellum-specifi 99.8 5E-22 1.7E-26 220.5 -3.4 188 35-267 131-341 (438)
83 3pih_A Uvrabc system protein A 99.8 3.7E-20 1.3E-24 220.6 11.3 161 84-269 384-559 (916)
84 3aez_A Pantothenate kinase; tr 99.8 1.3E-22 4.4E-27 215.9 -11.4 123 65-213 87-209 (312)
85 2jeo_A Uridine-cytidine kinase 99.8 7.8E-21 2.7E-25 194.9 0.1 179 53-272 10-189 (245)
86 4ad8_A DNA repair protein RECN 99.8 3.1E-19 1.1E-23 202.6 12.0 77 178-257 394-473 (517)
87 1cr0_A DNA primase/helicase; R 99.8 1.4E-20 4.7E-25 198.2 0.1 183 55-259 22-237 (296)
88 1tf7_A KAIC; homohexamer, hexa 99.8 2.1E-19 7.3E-24 204.3 8.5 156 62-258 275-444 (525)
89 2r6f_A Excinuclease ABC subuni 99.8 1.8E-18 6.1E-23 205.0 16.3 133 128-268 451-598 (972)
90 2o8b_B DNA mismatch repair pro 99.8 7.4E-20 2.5E-24 221.3 2.2 171 35-265 750-937 (1022)
91 3thx_A DNA mismatch repair pro 99.8 1.6E-18 5.4E-23 207.4 12.4 151 54-267 648-810 (934)
92 2ygr_A Uvrabc system protein A 99.8 2.6E-18 8.9E-23 204.3 13.7 136 126-269 466-616 (993)
93 1tf7_A KAIC; homohexamer, hexa 99.7 1.7E-21 5.9E-26 221.5 -14.4 168 54-258 24-211 (525)
94 2obl_A ESCN; ATPase, hydrolase 99.7 5.9E-20 2E-24 198.1 -1.9 189 35-267 45-252 (347)
95 2eyu_A Twitching motility prot 99.7 6.3E-19 2.1E-23 182.9 5.7 132 56-256 15-147 (261)
96 2ehv_A Hypothetical protein PH 99.7 1.1E-19 3.9E-24 184.9 -1.1 166 58-255 19-206 (251)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 8E-18 2.7E-22 159.8 9.1 81 176-258 53-141 (148)
98 4a74_A DNA repair and recombin 99.7 3.5E-19 1.2E-23 179.0 -0.4 154 63-258 20-201 (231)
99 3thx_B DNA mismatch repair pro 99.7 1.4E-17 4.8E-22 198.7 9.4 155 54-261 659-816 (918)
100 1ewq_A DNA mismatch repair pro 99.7 4E-18 1.4E-22 200.5 3.3 145 54-262 565-716 (765)
101 3asz_A Uridine kinase; cytidin 99.7 4.8E-20 1.7E-24 183.8 -11.4 145 65-240 3-161 (211)
102 1wb9_A DNA mismatch repair pro 99.7 1.1E-17 3.8E-22 197.8 4.2 157 54-264 594-752 (800)
103 1pzn_A RAD51, DNA repair and r 99.7 2.5E-18 8.6E-23 185.7 -2.8 166 57-264 119-309 (349)
104 2qnr_A Septin-2, protein NEDD5 99.7 1.5E-18 5E-23 183.8 -5.2 154 54-241 10-168 (301)
105 1rj9_A FTSY, signal recognitio 99.6 1.1E-17 3.7E-22 177.2 0.1 146 67-240 101-258 (304)
106 1nlf_A Regulatory protein REPA 99.6 5.2E-16 1.8E-20 161.9 11.6 151 64-241 26-182 (279)
107 3szr_A Interferon-induced GTP- 99.6 3.4E-18 1.2E-22 197.4 -5.9 192 35-271 10-238 (608)
108 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.5E-17 8.4E-22 165.3 0.6 170 55-257 9-192 (235)
109 2i3b_A HCR-ntpase, human cance 99.6 5.3E-18 1.8E-22 167.6 -5.2 155 68-263 1-169 (189)
110 3jvv_A Twitching mobility prot 99.6 1.7E-16 5.9E-21 171.5 6.1 127 64-257 119-246 (356)
111 1s96_A Guanylate kinase, GMP k 99.6 7.2E-17 2.5E-21 163.1 -2.0 151 61-274 9-164 (219)
112 2bdt_A BH3686; alpha-beta prot 99.6 1.2E-17 4.2E-22 163.6 -10.1 168 68-267 2-181 (189)
113 2qag_C Septin-7; cell cycle, c 99.6 1E-16 3.5E-21 176.6 -4.3 163 35-240 11-177 (418)
114 1pui_A ENGB, probable GTP-bind 99.5 1.3E-16 4.5E-21 157.9 -3.5 174 36-232 4-202 (210)
115 2cvh_A DNA repair and recombin 99.5 1E-14 3.5E-19 145.3 7.3 154 56-257 7-185 (220)
116 3kta_B Chromosome segregation 99.5 5.2E-14 1.8E-18 136.9 10.4 78 178-258 62-145 (173)
117 1zp6_A Hypothetical protein AT 99.5 7.1E-17 2.4E-21 158.0 -11.1 152 64-238 5-159 (191)
118 2ewv_A Twitching motility prot 99.5 1.2E-14 4E-19 158.2 4.0 131 56-255 126-257 (372)
119 2gza_A Type IV secretion syste 99.5 2.6E-14 8.9E-19 154.9 5.8 137 57-259 164-304 (361)
120 1lw7_A Transcriptional regulat 99.5 1.3E-16 4.5E-21 173.1 -12.9 168 57-256 157-343 (365)
121 2rcn_A Probable GTPase ENGC; Y 99.4 6.4E-14 2.2E-18 151.0 5.9 120 58-195 206-328 (358)
122 2bbw_A Adenylate kinase 4, AK4 99.4 1.5E-16 5.3E-21 162.8 -14.5 145 67-229 26-199 (246)
123 2qag_B Septin-6, protein NEDD5 99.4 5.6E-15 1.9E-19 162.4 -3.1 176 54-239 27-218 (427)
124 1nij_A Hypothetical protein YJ 99.4 3.5E-17 1.2E-21 174.4 -21.2 155 69-241 5-190 (318)
125 1n0w_A DNA repair protein RAD5 99.4 9.3E-14 3.2E-18 140.5 4.5 158 58-257 13-209 (243)
126 3auy_A DNA double-strand break 99.4 9.5E-13 3.2E-17 143.1 11.2 76 177-255 277-359 (371)
127 2f1r_A Molybdopterin-guanine d 99.4 3.3E-15 1.1E-19 145.1 -7.7 137 69-230 3-163 (171)
128 1htw_A HI0065; nucleotide-bind 99.4 1.3E-14 4.3E-19 139.2 -4.4 79 54-137 19-97 (158)
129 2kjq_A DNAA-related protein; s 99.4 2.9E-13 1E-17 128.3 4.7 99 56-243 29-128 (149)
130 3ec2_A DNA replication protein 99.4 1.5E-13 5E-18 133.5 2.5 49 195-243 97-146 (180)
131 1udx_A The GTP-binding protein 99.3 7.6E-14 2.6E-18 153.6 -1.5 169 58-253 147-321 (416)
132 1odf_A YGR205W, hypothetical 3 99.3 6.7E-14 2.3E-18 147.2 -2.5 128 66-215 29-169 (290)
133 3e70_C DPA, signal recognition 99.3 1.5E-13 5.3E-18 146.8 -0.4 141 66-240 127-279 (328)
134 2qm8_A GTPase/ATPase; G protei 99.3 8.4E-15 2.9E-19 157.3 -11.1 161 54-228 41-260 (337)
135 1w1w_A Structural maintenance 99.3 4.8E-12 1.6E-16 140.2 9.2 75 179-255 332-410 (430)
136 2yv5_A YJEQ protein; hydrolase 99.3 2E-13 6.7E-18 144.5 -2.5 119 66-194 163-301 (302)
137 2yhs_A FTSY, cell division pro 99.2 1E-12 3.4E-17 146.4 1.6 152 58-239 283-448 (503)
138 1sxj_E Activator 1 40 kDa subu 99.2 6.6E-12 2.2E-16 134.5 7.2 134 71-242 39-176 (354)
139 2oap_1 GSPE-2, type II secreti 99.2 2.1E-14 7.2E-19 162.2 -13.5 176 55-249 247-458 (511)
140 3c8u_A Fructokinase; YP_612366 99.2 6.1E-14 2.1E-18 139.8 -9.0 164 65-272 19-183 (208)
141 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.9E-14 1.7E-18 153.8 -12.6 170 64-267 16-210 (392)
142 3lda_A DNA repair protein RAD5 99.2 5.7E-11 1.9E-15 130.2 10.5 154 63-258 173-364 (400)
143 1p9r_A General secretion pathw 99.2 5.4E-14 1.9E-18 155.0 -14.2 135 55-204 156-315 (418)
144 1in4_A RUVB, holliday junction 99.1 7.6E-13 2.6E-17 141.7 -9.5 167 54-250 30-211 (334)
145 1u0l_A Probable GTPase ENGC; p 99.0 1E-11 3.4E-16 131.2 -2.5 99 65-173 166-289 (301)
146 1t9h_A YLOQ, probable GTPase E 99.0 2.4E-11 8.3E-16 128.4 -0.3 117 63-188 168-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.0 3.3E-14 1.1E-18 141.0 -21.7 57 191-256 116-173 (198)
148 2x8a_A Nuclear valosin-contain 99.0 3.2E-13 1.1E-17 140.8 -18.0 127 54-209 32-164 (274)
149 2dr3_A UPF0273 protein PH0284; 98.9 2.8E-09 9.4E-14 107.6 10.7 67 190-256 118-196 (247)
150 3lnc_A Guanylate kinase, GMP k 98.9 9.1E-13 3.1E-17 133.3 -17.1 198 54-266 13-220 (231)
151 2r6a_A DNAB helicase, replicat 98.9 4.2E-09 1.4E-13 117.3 9.7 174 55-259 190-401 (454)
152 1vma_A Cell division protein F 98.9 8.8E-10 3E-14 116.6 3.8 114 61-228 97-213 (306)
153 2px0_A Flagellar biosynthesis 98.8 4.7E-09 1.6E-13 110.5 9.2 141 66-262 103-247 (296)
154 3k1j_A LON protease, ATP-depen 98.8 9E-11 3.1E-15 135.5 -6.8 160 54-225 46-227 (604)
155 1ls1_A Signal recognition part 98.8 7.2E-09 2.5E-13 109.0 8.3 119 59-227 91-210 (295)
156 1sq5_A Pantothenate kinase; P- 98.8 2.1E-10 7.2E-15 121.4 -4.0 83 56-142 49-156 (308)
157 2ius_A DNA translocase FTSK; n 98.8 2.2E-10 7.4E-15 128.8 -4.5 163 60-241 159-343 (512)
158 3euj_A Chromosome partition pr 98.8 2.3E-09 7.8E-14 119.7 3.2 51 55-109 17-67 (483)
159 2zr9_A Protein RECA, recombina 98.7 7E-09 2.4E-13 111.7 6.6 154 57-264 48-237 (349)
160 1iy2_A ATP-dependent metallopr 98.7 6.1E-12 2.1E-16 130.8 -18.7 122 55-201 62-190 (278)
161 3tr0_A Guanylate kinase, GMP k 98.7 9.2E-10 3.1E-14 108.3 -2.6 67 62-135 1-72 (205)
162 1oix_A RAS-related protein RAB 98.7 1.5E-08 5.2E-13 98.8 6.1 39 186-226 151-189 (191)
163 1ixz_A ATP-dependent metallopr 98.6 1.1E-11 3.7E-16 127.0 -18.3 122 55-201 38-166 (254)
164 2qtf_A Protein HFLX, GTP-bindi 98.4 1.5E-07 5.1E-12 101.9 6.2 152 67-228 177-353 (364)
165 3hr8_A Protein RECA; alpha and 98.4 8.7E-08 3E-12 103.2 2.2 37 57-93 48-86 (356)
166 2ce7_A Cell division protein F 98.4 3.1E-07 1.1E-11 102.7 6.6 59 183-241 93-165 (476)
167 2f9l_A RAB11B, member RAS onco 98.4 4.9E-07 1.7E-11 88.4 7.2 37 189-227 130-166 (199)
168 4eun_A Thermoresistant glucoki 98.3 1.5E-08 5E-13 99.9 -4.7 46 57-109 18-63 (200)
169 1qhl_A Protein (cell division 98.3 1.7E-08 5.7E-13 102.2 -4.4 57 62-122 22-91 (227)
170 2xau_A PRE-mRNA-splicing facto 98.3 6.8E-07 2.3E-11 105.8 8.0 75 179-254 189-265 (773)
171 4a1f_A DNAB helicase, replicat 98.3 3.1E-07 1.1E-11 98.2 4.2 129 55-237 33-163 (338)
172 2e87_A Hypothetical protein PH 98.2 1.8E-06 6.2E-11 92.9 7.4 61 179-241 230-293 (357)
173 2z4s_A Chromosomal replication 98.1 3.2E-06 1.1E-10 93.6 7.7 96 197-294 193-296 (440)
174 3nwj_A ATSK2; P loop, shikimat 98.1 2.3E-07 7.7E-12 95.3 -2.0 52 35-92 17-72 (250)
175 1fnn_A CDC6P, cell division co 98.0 1E-05 3.6E-10 86.7 9.9 43 197-240 124-169 (389)
176 3a00_A Guanylate kinase, GMP k 98.0 1.1E-06 3.8E-11 85.4 1.5 27 68-94 1-27 (186)
177 3kta_A Chromosome segregation 98.0 4.4E-06 1.5E-10 80.3 5.4 35 59-94 18-52 (182)
178 2dhr_A FTSH; AAA+ protein, hex 98.0 2.3E-08 8E-13 112.3 -12.5 127 55-208 53-186 (499)
179 1zu4_A FTSY; GTPase, signal re 98.0 9.3E-07 3.2E-11 93.9 0.4 76 58-136 95-185 (320)
180 3b9p_A CG5977-PA, isoform A; A 98.0 4.1E-05 1.4E-09 79.5 12.4 73 182-254 97-186 (297)
181 3bh0_A DNAB-like replicative h 98.0 6.8E-06 2.3E-10 87.0 6.2 132 55-238 55-189 (315)
182 3uie_A Adenylyl-sulfate kinase 98.0 3.5E-07 1.2E-11 90.0 -3.6 51 55-109 12-64 (200)
183 1kgd_A CASK, peripheral plasma 97.9 2.4E-06 8.3E-11 82.6 2.4 38 66-105 3-40 (180)
184 3t34_A Dynamin-related protein 97.9 2.9E-05 9.8E-10 83.5 11.0 57 181-238 155-212 (360)
185 3vaa_A Shikimate kinase, SK; s 97.9 3.7E-06 1.3E-10 82.5 3.5 40 53-92 10-49 (199)
186 2j41_A Guanylate kinase; GMP, 97.9 4.5E-06 1.6E-10 81.6 4.0 31 64-94 2-32 (207)
187 3tqc_A Pantothenate kinase; bi 97.9 2E-07 7E-12 99.0 -6.7 134 54-213 72-211 (321)
188 1ega_A Protein (GTP-binding pr 97.8 2.1E-05 7.1E-10 82.7 7.0 155 68-253 8-171 (301)
189 1jjv_A Dephospho-COA kinase; P 97.8 1.5E-06 5.1E-11 85.5 -1.9 70 182-255 61-131 (206)
190 2vp4_A Deoxynucleoside kinase; 97.8 4.9E-06 1.7E-10 83.8 1.8 40 63-109 15-54 (230)
191 1v5w_A DMC1, meiotic recombina 97.8 0.00013 4.6E-09 77.9 12.8 143 58-240 111-274 (343)
192 4e22_A Cytidylate kinase; P-lo 97.8 2.2E-06 7.5E-11 87.7 -1.3 62 56-123 18-96 (252)
193 3tau_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 79.0 4.0 29 66-94 6-34 (208)
194 2qt1_A Nicotinamide riboside k 97.7 2.1E-05 7.3E-10 77.3 4.3 44 64-128 17-60 (207)
195 2z43_A DNA repair and recombin 97.7 0.00019 6.6E-09 76.0 11.4 144 58-239 96-257 (324)
196 2dy1_A Elongation factor G; tr 97.7 1.6E-05 5.4E-10 92.7 3.2 129 62-240 3-136 (665)
197 1knq_A Gluconate kinase; ALFA/ 97.6 1.7E-05 5.9E-10 75.6 2.1 36 66-108 6-41 (175)
198 1svm_A Large T antigen; AAA+ f 97.6 8.4E-06 2.9E-10 88.4 -0.3 44 55-104 156-199 (377)
199 1rz3_A Hypothetical protein rb 97.6 1.1E-05 3.7E-10 79.4 0.4 40 65-107 19-58 (201)
200 3cf0_A Transitional endoplasmi 97.5 7.3E-05 2.5E-09 78.3 5.8 29 64-92 45-73 (301)
201 3kl4_A SRP54, signal recogniti 97.5 0.00017 5.7E-09 79.5 8.7 125 67-239 96-223 (433)
202 2qby_A CDC6 homolog 1, cell di 97.5 1.8E-05 6E-10 84.5 0.5 28 66-93 43-70 (386)
203 1kag_A SKI, shikimate kinase I 97.5 4.2E-05 1.4E-09 72.6 2.7 27 67-93 3-29 (173)
204 3ney_A 55 kDa erythrocyte memb 97.5 4.3E-05 1.5E-09 75.4 2.8 28 66-93 17-44 (197)
205 3llm_A ATP-dependent RNA helic 97.5 2.7E-05 9.4E-10 78.4 1.4 67 182-250 162-229 (235)
206 3cr8_A Sulfate adenylyltranfer 97.4 2.4E-05 8.2E-10 89.0 0.9 42 64-108 365-408 (552)
207 2wjg_A FEOB, ferrous iron tran 97.4 7.8E-05 2.7E-09 71.2 3.8 22 70-91 9-30 (188)
208 1lv7_A FTSH; alpha/beta domain 97.4 0.00055 1.9E-08 69.4 9.8 35 57-93 36-70 (257)
209 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00011 3.8E-09 69.0 4.0 31 59-90 15-45 (149)
210 1l8q_A Chromosomal replication 97.3 0.00037 1.3E-08 73.3 8.3 46 196-241 96-142 (324)
211 1ypw_A Transitional endoplasmi 97.3 0.00016 5.3E-09 86.1 5.6 30 64-93 234-263 (806)
212 2w58_A DNAI, primosome compone 97.3 0.00025 8.7E-09 69.0 5.8 25 69-93 55-79 (202)
213 3lxx_A GTPase IMAP family memb 97.2 0.0029 9.8E-08 63.4 13.4 24 70-93 31-54 (239)
214 1w1w_A Structural maintenance 97.2 0.00013 4.4E-09 80.4 3.4 32 63-94 21-52 (430)
215 2pez_A Bifunctional 3'-phospho 97.1 9.8E-05 3.3E-09 70.8 1.3 28 66-93 3-30 (179)
216 2q6t_A DNAB replication FORK h 97.1 0.00088 3E-08 74.1 8.9 127 56-237 188-317 (444)
217 3h4m_A Proteasome-activating n 97.1 0.0017 5.8E-08 66.6 10.4 28 65-92 48-75 (285)
218 2p67_A LAO/AO transport system 97.1 3.7E-05 1.2E-09 82.2 -2.6 50 54-106 42-91 (341)
219 3bgw_A DNAB-like replicative h 97.1 0.00057 1.9E-08 75.7 6.6 36 56-91 185-220 (444)
220 4eaq_A DTMP kinase, thymidylat 97.0 0.0002 6.9E-09 72.1 2.5 37 57-93 12-51 (229)
221 2gj8_A MNME, tRNA modification 97.0 0.00072 2.5E-08 64.2 6.1 27 66-92 2-28 (172)
222 2b8t_A Thymidine kinase; deoxy 97.0 0.0012 4.1E-08 66.3 7.5 53 198-255 89-150 (223)
223 2www_A Methylmalonic aciduria 97.0 0.00017 5.7E-09 77.4 1.2 40 66-108 72-111 (349)
224 3d8b_A Fidgetin-like protein 1 97.0 0.0032 1.1E-07 67.4 11.2 27 66-92 115-141 (357)
225 3ice_A Transcription terminati 97.0 8.4E-05 2.9E-09 80.2 -1.2 51 36-92 134-198 (422)
226 1u94_A RECA protein, recombina 96.9 0.0074 2.5E-07 64.8 13.7 35 57-91 50-86 (356)
227 3bos_A Putative DNA replicatio 96.9 0.00078 2.7E-08 66.6 5.7 44 197-240 103-148 (242)
228 3qks_A DNA double-strand break 96.9 0.00054 1.8E-08 67.6 4.0 30 60-90 16-45 (203)
229 1cke_A CK, MSSA, protein (cyti 96.9 0.00044 1.5E-08 68.5 3.4 37 68-104 5-41 (227)
230 2qor_A Guanylate kinase; phosp 96.9 0.00036 1.2E-08 68.4 2.6 29 65-93 9-37 (204)
231 1mky_A Probable GTP-binding pr 96.8 0.00095 3.3E-08 73.6 6.0 68 70-137 182-263 (439)
232 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.01 3.5E-07 62.5 13.4 28 65-92 42-69 (322)
233 3m6a_A ATP-dependent protease 96.8 0.00018 6.1E-09 81.8 -0.3 47 56-106 97-143 (543)
234 1m7g_A Adenylylsulfate kinase; 96.8 0.0003 1E-08 69.4 1.1 40 65-107 22-63 (211)
235 1m2o_B GTP-binding protein SAR 96.8 0.0013 4.4E-08 63.3 5.5 36 55-91 11-46 (190)
236 1np6_A Molybdopterin-guanine d 96.7 0.00062 2.1E-08 65.7 2.9 39 69-107 7-45 (174)
237 1y63_A LMAJ004144AAA protein; 96.7 0.00074 2.5E-08 65.1 3.0 32 60-91 2-33 (184)
238 2v1u_A Cell division control p 96.6 0.0018 6.1E-08 68.9 6.0 27 66-92 42-68 (387)
239 3lxw_A GTPase IMAP family memb 96.6 0.0076 2.6E-07 61.0 10.3 24 70-93 23-46 (247)
240 3auy_A DNA double-strand break 96.6 0.0018 6.1E-08 69.8 5.9 31 58-89 16-46 (371)
241 2i1q_A DNA repair and recombin 96.6 0.008 2.7E-07 63.1 10.5 34 57-90 86-120 (322)
242 2if2_A Dephospho-COA kinase; a 96.6 0.00096 3.3E-08 65.0 3.0 21 70-90 3-23 (204)
243 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.006 2E-07 61.4 9.0 27 66-92 37-63 (262)
244 1f6b_A SAR1; gtpases, N-termin 96.5 0.00052 1.8E-08 66.7 0.7 37 54-91 12-48 (198)
245 2qgz_A Helicase loader, putati 96.5 0.0016 5.5E-08 68.4 4.4 25 68-92 152-176 (308)
246 2zts_A Putative uncharacterize 96.4 0.0037 1.3E-07 62.3 6.5 60 196-255 133-206 (251)
247 2ffh_A Protein (FFH); SRP54, s 96.4 0.00076 2.6E-08 74.1 1.1 45 59-108 91-135 (425)
248 2yvu_A Probable adenylyl-sulfa 96.4 0.0018 6.2E-08 62.2 3.6 30 65-94 10-39 (186)
249 2r8r_A Sensor protein; KDPD, P 96.3 0.0025 8.6E-08 64.0 4.5 45 194-238 80-125 (228)
250 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0004 1.4E-08 74.3 -1.4 38 55-92 9-48 (359)
251 2wji_A Ferrous iron transport 96.3 0.0019 6.5E-08 60.5 3.5 23 70-92 5-27 (165)
252 2p5t_B PEZT; postsegregational 96.3 0.00087 3E-08 68.2 1.0 46 57-108 22-67 (253)
253 1qhx_A CPT, protein (chloramph 96.3 0.0019 6.5E-08 61.3 3.2 27 67-93 2-28 (178)
254 3t61_A Gluconokinase; PSI-biol 96.3 0.0017 5.7E-08 63.3 2.8 25 68-92 18-42 (202)
255 1q57_A DNA primase/helicase; d 96.3 0.027 9.4E-07 62.9 13.1 172 56-255 230-440 (503)
256 3cm0_A Adenylate kinase; ATP-b 96.3 0.0022 7.6E-08 61.2 3.5 26 66-91 2-27 (186)
257 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0018 6.2E-08 70.4 2.9 47 61-107 15-69 (396)
258 3kb2_A SPBC2 prophage-derived 96.2 0.0025 8.5E-08 59.8 3.3 23 70-92 3-25 (173)
259 1xx6_A Thymidine kinase; NESG, 96.1 0.0067 2.3E-07 59.3 6.2 53 198-255 81-142 (191)
260 1sxj_C Activator 1 40 kDa subu 96.1 0.00057 2E-08 72.5 -1.6 41 54-94 30-72 (340)
261 1q3t_A Cytidylate kinase; nucl 96.0 0.003 1E-07 63.2 3.4 29 64-92 12-40 (236)
262 3cmw_A Protein RECA, recombina 96.0 0.037 1.3E-06 70.1 13.7 29 64-92 728-756 (1706)
263 2zej_A Dardarin, leucine-rich 96.0 0.0029 9.9E-08 60.4 3.1 23 70-92 4-26 (184)
264 1j8m_F SRP54, signal recogniti 96.0 0.00065 2.2E-08 71.2 -1.9 45 59-107 89-134 (297)
265 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.013 4.5E-07 61.8 8.0 28 63-90 118-145 (331)
266 1kht_A Adenylate kinase; phosp 96.0 0.0038 1.3E-07 59.6 3.6 26 67-92 2-27 (192)
267 3r20_A Cytidylate kinase; stru 95.9 0.0038 1.3E-07 63.0 3.4 25 68-92 9-33 (233)
268 3io5_A Recombination and repai 95.9 0.021 7E-07 60.2 8.8 27 63-90 24-51 (333)
269 2qp9_X Vacuolar protein sortin 95.8 0.024 8.3E-07 60.5 9.6 27 66-92 82-108 (355)
270 1xp8_A RECA protein, recombina 95.8 0.052 1.8E-06 58.4 12.1 34 57-90 61-96 (366)
271 2rhm_A Putative kinase; P-loop 95.8 0.0045 1.5E-07 59.3 3.4 27 66-92 3-29 (193)
272 2ze6_A Isopentenyl transferase 95.8 0.0045 1.5E-07 63.0 3.4 24 69-92 2-25 (253)
273 2qag_A Septin-2, protein NEDD5 95.7 0.0031 1.1E-07 67.7 2.0 34 54-93 29-62 (361)
274 1ex7_A Guanylate kinase; subst 95.7 0.005 1.7E-07 59.9 3.2 24 70-93 3-26 (186)
275 2v54_A DTMP kinase, thymidylat 95.7 0.006 2E-07 59.0 3.8 26 67-92 3-28 (204)
276 1gvn_B Zeta; postsegregational 95.7 0.005 1.7E-07 63.9 3.3 36 66-106 31-66 (287)
277 3lw7_A Adenylate kinase relate 95.7 0.0055 1.9E-07 57.1 3.3 19 70-88 3-21 (179)
278 3trf_A Shikimate kinase, SK; a 95.7 0.0058 2E-07 58.3 3.5 26 67-92 4-29 (185)
279 1vht_A Dephospho-COA kinase; s 95.7 0.0059 2E-07 60.1 3.7 24 67-90 3-26 (218)
280 3iij_A Coilin-interacting nucl 95.6 0.0054 1.9E-07 58.4 3.0 25 67-91 10-34 (180)
281 2plr_A DTMP kinase, probable t 95.6 0.007 2.4E-07 58.7 3.8 27 67-93 3-29 (213)
282 2jaq_A Deoxyguanosine kinase; 95.6 0.0062 2.1E-07 58.7 3.4 23 70-92 2-24 (205)
283 2orv_A Thymidine kinase; TP4A 95.6 0.04 1.4E-06 55.3 9.3 53 197-255 89-150 (234)
284 4b4t_J 26S protease regulatory 95.5 0.075 2.6E-06 57.7 12.0 28 66-93 180-207 (405)
285 2j9r_A Thymidine kinase; TK1, 95.5 0.036 1.2E-06 55.0 8.6 53 198-255 101-162 (214)
286 1xjc_A MOBB protein homolog; s 95.5 0.0054 1.8E-07 58.8 2.4 25 69-93 5-29 (169)
287 1ly1_A Polynucleotide kinase; 95.5 0.008 2.7E-07 56.7 3.6 22 69-90 3-24 (181)
288 3vfd_A Spastin; ATPase, microt 95.4 0.074 2.5E-06 57.2 11.7 27 66-92 146-172 (389)
289 2wwf_A Thymidilate kinase, put 95.4 0.0076 2.6E-07 58.6 3.4 27 66-92 8-34 (212)
290 1gtv_A TMK, thymidylate kinase 95.4 0.0036 1.2E-07 61.1 1.0 24 70-93 2-25 (214)
291 1uf9_A TT1252 protein; P-loop, 95.4 0.0085 2.9E-07 57.8 3.5 24 68-91 8-31 (203)
292 4b4t_L 26S protease subunit RP 95.4 0.077 2.6E-06 58.3 11.5 70 192-267 268-354 (437)
293 1via_A Shikimate kinase; struc 95.3 0.0081 2.8E-07 56.9 3.2 23 70-92 6-28 (175)
294 2c95_A Adenylate kinase 1; tra 95.3 0.008 2.7E-07 57.6 3.2 27 66-92 7-33 (196)
295 3k53_A Ferrous iron transport 95.3 0.0072 2.4E-07 61.9 2.9 47 207-254 144-191 (271)
296 1nn5_A Similar to deoxythymidy 95.3 0.009 3.1E-07 58.2 3.3 27 66-92 7-33 (215)
297 1nks_A Adenylate kinase; therm 95.2 0.0091 3.1E-07 56.9 3.2 24 70-93 3-26 (194)
298 4b4t_K 26S protease regulatory 95.2 0.087 3E-06 57.8 11.3 28 65-92 203-230 (428)
299 1tev_A UMP-CMP kinase; ploop, 95.2 0.011 3.8E-07 56.3 3.7 25 67-91 2-26 (196)
300 4b4t_H 26S protease regulatory 95.1 0.071 2.4E-06 58.8 10.3 29 65-93 240-268 (467)
301 2ged_A SR-beta, signal recogni 95.1 0.0096 3.3E-07 56.7 3.0 24 69-92 49-72 (193)
302 3hu3_A Transitional endoplasmi 95.1 0.018 6.3E-07 64.3 5.7 28 65-92 235-262 (489)
303 1z2a_A RAS-related protein RAB 95.1 0.01 3.5E-07 54.7 3.0 23 70-92 7-29 (168)
304 4b4t_M 26S protease regulatory 95.0 0.067 2.3E-06 58.8 9.8 28 65-92 212-239 (434)
305 2nzj_A GTP-binding protein REM 95.0 0.012 4E-07 54.8 3.3 23 70-92 6-28 (175)
306 2erx_A GTP-binding protein DI- 95.0 0.012 4E-07 54.4 3.3 22 70-91 5-26 (172)
307 1kao_A RAP2A; GTP-binding prot 95.0 0.012 4E-07 54.0 3.0 23 70-92 5-27 (167)
308 2bwj_A Adenylate kinase 5; pho 95.0 0.0097 3.3E-07 57.2 2.5 27 66-92 10-36 (199)
309 3q72_A GTP-binding protein RAD 95.0 0.01 3.4E-07 54.9 2.5 22 71-92 5-26 (166)
310 2dyk_A GTP-binding protein; GT 94.9 0.012 4.1E-07 53.9 3.0 23 70-92 3-25 (161)
311 1ko7_A HPR kinase/phosphatase; 94.9 0.019 6.6E-07 60.3 5.0 36 55-91 132-167 (314)
312 1u8z_A RAS-related protein RAL 94.9 0.012 4E-07 54.1 3.0 23 70-92 6-28 (168)
313 3cmu_A Protein RECA, recombina 94.9 0.13 4.4E-06 66.1 13.1 153 57-263 370-558 (2050)
314 2ce2_X GTPase HRAS; signaling 94.9 0.011 3.8E-07 54.0 2.7 23 70-92 5-27 (166)
315 3q85_A GTP-binding protein REM 94.9 0.013 4.6E-07 54.1 3.2 22 71-92 5-26 (169)
316 3ake_A Cytidylate kinase; CMP 94.9 0.013 4.5E-07 56.7 3.2 23 70-92 4-26 (208)
317 2z0h_A DTMP kinase, thymidylat 94.9 0.014 4.8E-07 55.9 3.4 23 70-92 2-24 (197)
318 1z0j_A RAB-22, RAS-related pro 94.8 0.013 4.5E-07 54.1 3.0 23 70-92 8-30 (170)
319 1aky_A Adenylate kinase; ATP:A 94.8 0.015 5.2E-07 57.2 3.7 27 66-92 2-28 (220)
320 1z08_A RAS-related protein RAB 94.8 0.013 4.5E-07 54.2 3.0 23 70-92 8-30 (170)
321 3tw8_B RAS-related protein RAB 94.8 0.012 4.3E-07 54.8 2.9 23 70-92 11-33 (181)
322 1ek0_A Protein (GTP-binding pr 94.8 0.013 4.6E-07 53.9 3.0 23 70-92 5-27 (170)
323 1g16_A RAS-related protein SEC 94.8 0.013 4.3E-07 54.2 2.7 22 71-92 6-27 (170)
324 1c1y_A RAS-related protein RAP 94.8 0.014 4.7E-07 53.7 3.0 23 70-92 5-27 (167)
325 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.014 4.8E-07 54.5 3.0 23 70-92 9-31 (177)
326 1ky3_A GTP-binding protein YPT 94.8 0.014 4.8E-07 54.5 3.0 23 70-92 10-32 (182)
327 3ihw_A Centg3; RAS, centaurin, 94.7 0.034 1.2E-06 52.9 5.8 22 70-91 22-43 (184)
328 3b1v_A Ferrous iron uptake tra 94.7 0.015 5E-07 60.0 3.3 23 70-92 5-27 (272)
329 3co5_A Putative two-component 94.7 0.041 1.4E-06 50.5 6.0 42 198-240 75-116 (143)
330 2vli_A Antibiotic resistance p 94.7 0.011 3.9E-07 55.9 2.3 26 67-92 4-29 (183)
331 2lkc_A Translation initiation 94.7 0.019 6.4E-07 53.6 3.7 25 68-92 8-32 (178)
332 1svi_A GTP-binding protein YSX 94.7 0.013 4.6E-07 55.7 2.7 23 70-92 25-47 (195)
333 1zd8_A GTP:AMP phosphotransfer 94.7 0.015 5.3E-07 57.5 3.3 27 66-92 5-31 (227)
334 1fzq_A ADP-ribosylation factor 94.7 0.013 4.4E-07 55.7 2.5 22 70-91 18-39 (181)
335 2fn4_A P23, RAS-related protei 94.6 0.014 4.9E-07 54.4 2.7 22 70-91 11-32 (181)
336 1jal_A YCHF protein; nucleotid 94.6 0.024 8.2E-07 60.9 4.8 39 68-106 2-48 (363)
337 3pqc_A Probable GTP-binding pr 94.6 0.014 4.9E-07 55.2 2.7 23 70-92 25-47 (195)
338 3clv_A RAB5 protein, putative; 94.6 0.016 5.6E-07 55.0 3.0 23 70-92 9-31 (208)
339 1r2q_A RAS-related protein RAB 94.6 0.017 5.7E-07 53.3 3.0 22 70-91 8-29 (170)
340 4dsu_A GTPase KRAS, isoform 2B 94.6 0.017 5.7E-07 54.5 3.0 23 70-92 6-28 (189)
341 2cdn_A Adenylate kinase; phosp 94.6 0.02 6.9E-07 55.4 3.7 26 67-92 19-44 (201)
342 3fb4_A Adenylate kinase; psych 94.5 0.018 6.3E-07 56.3 3.4 23 70-92 2-24 (216)
343 2pbr_A DTMP kinase, thymidylat 94.5 0.019 6.5E-07 54.7 3.4 23 70-92 2-24 (195)
344 2hxs_A RAB-26, RAS-related pro 94.5 0.019 6.4E-07 53.6 3.3 23 70-92 8-30 (178)
345 2qmh_A HPR kinase/phosphorylas 94.5 0.029 9.8E-07 55.2 4.6 36 55-91 22-57 (205)
346 2cxx_A Probable GTP-binding pr 94.5 0.016 5.3E-07 54.8 2.7 22 71-92 4-25 (190)
347 1upt_A ARL1, ADP-ribosylation 94.5 0.017 6E-07 53.4 3.0 23 70-92 9-31 (171)
348 4b4t_I 26S protease regulatory 94.5 0.15 5.2E-06 55.7 10.8 68 193-266 270-354 (437)
349 3bc1_A RAS-related protein RAB 94.5 0.018 6E-07 54.4 3.0 23 70-92 13-35 (195)
350 3cmw_A Protein RECA, recombina 94.5 0.24 8.1E-06 62.9 13.8 153 57-263 370-558 (1706)
351 1ukz_A Uridylate kinase; trans 94.5 0.021 7.2E-07 55.2 3.6 25 68-92 15-39 (203)
352 2oil_A CATX-8, RAS-related pro 94.4 0.018 6.1E-07 54.9 3.0 23 70-92 27-49 (193)
353 1e6c_A Shikimate kinase; phosp 94.4 0.018 6E-07 54.1 2.9 24 69-92 3-26 (173)
354 1zuh_A Shikimate kinase; alpha 94.4 0.021 7.3E-07 53.5 3.5 24 69-92 8-31 (168)
355 1r8s_A ADP-ribosylation factor 94.4 0.019 6.4E-07 52.9 3.0 21 71-91 3-23 (164)
356 1zak_A Adenylate kinase; ATP:A 94.4 0.017 5.9E-07 56.9 2.8 26 67-92 4-29 (222)
357 2pt5_A Shikimate kinase, SK; a 94.3 0.023 7.9E-07 53.0 3.5 23 70-92 2-24 (168)
358 2y8e_A RAB-protein 6, GH09086P 94.3 0.018 6.2E-07 53.6 2.7 22 70-91 16-37 (179)
359 2a9k_A RAS-related protein RAL 94.3 0.02 6.8E-07 53.7 3.0 23 70-92 20-42 (187)
360 2g6b_A RAS-related protein RAB 94.3 0.02 6.8E-07 53.5 3.0 23 70-92 12-34 (180)
361 3dl0_A Adenylate kinase; phosp 94.3 0.022 7.5E-07 55.8 3.4 23 70-92 2-24 (216)
362 1qf9_A UMP/CMP kinase, protein 94.3 0.023 7.7E-07 54.1 3.4 24 68-91 6-29 (194)
363 3t1o_A Gliding protein MGLA; G 94.3 0.023 7.8E-07 53.8 3.4 25 70-94 16-40 (198)
364 1z0f_A RAB14, member RAS oncog 94.3 0.02 7E-07 53.2 3.0 23 70-92 17-39 (179)
365 1moz_A ARL1, ADP-ribosylation 94.3 0.013 4.5E-07 55.1 1.5 23 68-90 18-40 (183)
366 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.025 8.7E-07 57.5 3.8 26 67-92 3-28 (260)
367 2efe_B Small GTP-binding prote 94.3 0.021 7.3E-07 53.4 3.0 23 70-92 14-36 (181)
368 3con_A GTPase NRAS; structural 94.2 0.021 7.2E-07 54.2 3.0 23 70-92 23-45 (190)
369 3dm5_A SRP54, signal recogniti 94.2 0.38 1.3E-05 52.9 13.3 27 67-93 99-125 (443)
370 2iyv_A Shikimate kinase, SK; t 94.2 0.019 6.6E-07 54.6 2.7 24 69-92 3-26 (184)
371 4ag6_A VIRB4 ATPase, type IV s 94.2 0.014 4.9E-07 63.0 1.9 45 198-242 262-309 (392)
372 1wf3_A GTP-binding protein; GT 94.2 0.023 8E-07 59.3 3.5 23 70-92 9-31 (301)
373 1nrj_B SR-beta, signal recogni 94.2 0.022 7.5E-07 55.5 3.0 23 70-92 14-36 (218)
374 2bov_A RAla, RAS-related prote 94.1 0.023 7.7E-07 54.5 3.0 23 70-92 16-38 (206)
375 3t5d_A Septin-7; GTP-binding p 94.1 0.019 6.6E-07 58.8 2.6 22 71-92 11-32 (274)
376 3iby_A Ferrous iron transport 94.1 0.021 7.3E-07 58.1 2.9 23 70-92 3-25 (256)
377 1vg8_A RAS-related protein RAB 94.1 0.023 8E-07 54.5 3.0 23 70-92 10-32 (207)
378 3tlx_A Adenylate kinase 2; str 94.1 0.028 9.6E-07 56.6 3.7 25 67-91 28-52 (243)
379 2bme_A RAB4A, RAS-related prot 94.1 0.022 7.4E-07 53.7 2.7 23 70-92 12-34 (186)
380 1ksh_A ARF-like protein 2; sma 94.1 0.024 8.2E-07 53.5 3.0 26 67-92 17-42 (186)
381 2gf9_A RAS-related protein RAB 94.1 0.024 8.2E-07 53.9 3.0 23 70-92 24-46 (189)
382 3iev_A GTP-binding protein ERA 94.1 0.026 8.8E-07 59.1 3.5 23 70-92 12-34 (308)
383 3tkl_A RAS-related protein RAB 94.0 0.025 8.4E-07 53.8 3.0 23 70-92 18-40 (196)
384 2gf0_A GTP-binding protein DI- 94.0 0.023 7.9E-07 54.1 2.7 22 70-91 10-31 (199)
385 2xtp_A GTPase IMAP family memb 94.0 0.024 8.2E-07 57.3 3.0 23 70-92 24-46 (260)
386 3cbq_A GTP-binding protein REM 94.0 0.021 7E-07 55.1 2.3 22 70-91 25-46 (195)
387 3kkq_A RAS-related protein M-R 94.0 0.026 8.9E-07 53.1 3.0 23 70-92 20-42 (183)
388 1jbk_A CLPB protein; beta barr 94.0 0.032 1.1E-06 52.2 3.6 27 66-92 41-67 (195)
389 1uj2_A Uridine-cytidine kinase 94.0 0.028 9.6E-07 56.7 3.4 24 69-92 23-46 (252)
390 2fg5_A RAB-22B, RAS-related pr 93.9 0.024 8.3E-07 54.1 2.7 23 70-92 25-47 (192)
391 1mh1_A RAC1; GTP-binding, GTPa 93.9 0.027 9.1E-07 52.9 3.0 22 70-91 7-28 (186)
392 1m7b_A RND3/RHOE small GTP-bin 93.9 0.024 8.3E-07 53.7 2.7 23 70-92 9-31 (184)
393 1zbd_A Rabphilin-3A; G protein 93.9 0.029 9.8E-07 53.9 3.2 23 70-92 10-32 (203)
394 3a8t_A Adenylate isopentenyltr 93.9 0.037 1.3E-06 58.7 4.3 26 67-92 39-64 (339)
395 2dby_A GTP-binding protein; GD 93.9 0.025 8.5E-07 60.9 3.0 21 71-91 4-24 (368)
396 2grj_A Dephospho-COA kinase; T 93.9 0.031 1.1E-06 54.4 3.4 23 69-91 13-35 (192)
397 2wsm_A Hydrogenase expression/ 93.8 0.027 9.4E-07 55.0 3.0 24 69-92 31-54 (221)
398 3a1s_A Iron(II) transport prot 93.8 0.029 9.9E-07 57.1 3.3 23 70-92 7-29 (258)
399 1z06_A RAS-related protein RAB 93.8 0.029 9.8E-07 53.3 3.0 22 70-91 22-43 (189)
400 3tqf_A HPR(Ser) kinase; transf 93.8 0.059 2E-06 51.8 5.1 36 55-91 4-39 (181)
401 1jwy_B Dynamin A GTPase domain 93.8 0.027 9.2E-07 58.5 3.0 23 70-92 26-48 (315)
402 2il1_A RAB12; G-protein, GDP, 93.8 0.027 9.3E-07 53.9 2.8 23 70-92 28-50 (192)
403 4fcw_A Chaperone protein CLPB; 93.8 0.032 1.1E-06 57.6 3.6 27 68-94 47-73 (311)
404 3bwd_D RAC-like GTP-binding pr 93.7 0.03 1E-06 52.4 3.0 23 70-92 10-32 (182)
405 4dhe_A Probable GTP-binding pr 93.7 0.016 5.6E-07 56.5 1.1 23 70-92 31-53 (223)
406 3oes_A GTPase rhebl1; small GT 93.7 0.027 9.3E-07 54.2 2.7 23 70-92 26-48 (201)
407 3i8s_A Ferrous iron transport 93.7 0.028 9.7E-07 57.7 3.0 23 70-92 5-27 (274)
408 2a5j_A RAS-related protein RAB 93.7 0.03 1E-06 53.3 3.0 23 70-92 23-45 (191)
409 2cjw_A GTP-binding protein GEM 93.7 0.03 1E-06 53.8 3.0 22 70-91 8-29 (192)
410 3u61_B DNA polymerase accessor 93.7 0.18 6.2E-06 52.4 9.2 42 198-241 105-147 (324)
411 3t5g_A GTP-binding protein RHE 93.7 0.028 9.7E-07 52.7 2.7 22 70-91 8-29 (181)
412 3dz8_A RAS-related protein RAB 93.7 0.028 9.7E-07 53.5 2.7 23 70-92 25-47 (191)
413 1x3s_A RAS-related protein RAB 93.7 0.031 1.1E-06 52.9 3.0 23 70-92 17-39 (195)
414 2bcg_Y Protein YP2, GTP-bindin 93.7 0.028 9.7E-07 54.1 2.7 23 70-92 10-32 (206)
415 1zd9_A ADP-ribosylation factor 93.7 0.032 1.1E-06 53.1 3.0 23 70-92 24-46 (188)
416 1zj6_A ADP-ribosylation factor 93.7 0.031 1.1E-06 53.0 2.9 22 70-91 18-39 (187)
417 2xb4_A Adenylate kinase; ATP-b 93.6 0.036 1.2E-06 54.9 3.4 23 70-92 2-24 (223)
418 2qu8_A Putative nucleolar GTP- 93.6 0.031 1.1E-06 55.1 3.0 22 70-91 31-52 (228)
419 2o52_A RAS-related protein RAB 93.6 0.031 1.1E-06 53.9 2.9 23 70-92 27-49 (200)
420 2atv_A RERG, RAS-like estrogen 93.6 0.032 1.1E-06 53.3 3.0 23 70-92 30-52 (196)
421 3cph_A RAS-related protein SEC 93.6 0.032 1.1E-06 53.8 3.0 23 70-92 22-44 (213)
422 2h57_A ADP-ribosylation factor 93.6 0.024 8.3E-07 53.9 2.1 23 70-92 23-45 (190)
423 4bas_A ADP-ribosylation factor 93.6 0.032 1.1E-06 53.1 2.9 23 70-92 19-41 (199)
424 2p5s_A RAS and EF-hand domain 93.6 0.033 1.1E-06 53.5 3.0 24 69-92 29-52 (199)
425 2f6r_A COA synthase, bifunctio 93.6 0.033 1.1E-06 57.5 3.2 23 68-90 75-97 (281)
426 3reg_A RHO-like small GTPase; 93.6 0.033 1.1E-06 53.1 3.0 23 70-92 25-47 (194)
427 2f7s_A C25KG, RAS-related prot 93.6 0.036 1.2E-06 53.9 3.3 23 70-92 27-49 (217)
428 1a7j_A Phosphoribulokinase; tr 93.6 0.018 6.1E-07 59.9 1.1 26 67-92 4-29 (290)
429 4edh_A DTMP kinase, thymidylat 93.6 0.042 1.4E-06 54.4 3.8 28 66-93 4-31 (213)
430 2h17_A ADP-ribosylation factor 93.5 0.029 9.9E-07 52.9 2.5 22 70-91 23-44 (181)
431 3be4_A Adenylate kinase; malar 93.5 0.037 1.3E-06 54.5 3.2 25 68-92 5-29 (217)
432 2ew1_A RAS-related protein RAB 93.5 0.032 1.1E-06 54.2 2.7 23 70-92 28-50 (201)
433 1ltq_A Polynucleotide kinase; 93.4 0.042 1.4E-06 56.7 3.6 23 69-91 3-25 (301)
434 2iwr_A Centaurin gamma 1; ANK 93.4 0.029 1E-06 52.4 2.2 22 70-91 9-30 (178)
435 2fv8_A H6, RHO-related GTP-bin 93.4 0.034 1.2E-06 53.8 2.7 23 70-92 27-49 (207)
436 3exa_A TRNA delta(2)-isopenten 93.4 0.049 1.7E-06 57.2 4.0 25 68-92 3-27 (322)
437 3v9p_A DTMP kinase, thymidylat 93.4 0.032 1.1E-06 55.9 2.6 29 65-93 22-50 (227)
438 2q3h_A RAS homolog gene family 93.4 0.041 1.4E-06 52.7 3.2 24 69-92 21-44 (201)
439 3c5c_A RAS-like protein 12; GD 93.3 0.039 1.3E-06 52.5 3.0 23 70-92 23-45 (187)
440 2aka_B Dynamin-1; fusion prote 93.3 0.033 1.1E-06 57.1 2.7 23 70-92 28-50 (299)
441 3llu_A RAS-related GTP-binding 93.3 0.041 1.4E-06 52.7 3.2 24 70-93 22-45 (196)
442 1e4v_A Adenylate kinase; trans 93.3 0.041 1.4E-06 53.9 3.1 23 70-92 2-24 (214)
443 2fh5_B SR-beta, signal recogni 93.3 0.04 1.4E-06 53.4 3.0 23 70-92 9-31 (214)
444 3d3q_A TRNA delta(2)-isopenten 93.2 0.037 1.3E-06 58.8 2.9 24 69-92 8-31 (340)
445 1gwn_A RHO-related GTP-binding 93.2 0.037 1.3E-06 53.9 2.7 23 70-92 30-52 (205)
446 2j1l_A RHO-related GTP-binding 93.2 0.04 1.4E-06 53.7 3.0 22 70-91 36-57 (214)
447 2p65_A Hypothetical protein PF 93.2 0.04 1.4E-06 51.6 2.8 28 66-93 41-68 (187)
448 3umf_A Adenylate kinase; rossm 93.2 0.05 1.7E-06 54.1 3.6 27 66-92 27-53 (217)
449 1ak2_A Adenylate kinase isoenz 93.2 0.05 1.7E-06 54.1 3.7 26 67-92 15-40 (233)
450 2fu5_C RAS-related protein RAB 93.2 0.028 9.4E-07 52.9 1.6 22 70-91 10-31 (183)
451 3zvl_A Bifunctional polynucleo 93.1 0.042 1.4E-06 60.0 3.2 27 66-92 256-282 (416)
452 3lv8_A DTMP kinase, thymidylat 93.1 0.047 1.6E-06 55.0 3.3 27 67-93 26-52 (236)
453 2b6h_A ADP-ribosylation factor 93.1 0.038 1.3E-06 52.9 2.5 22 70-91 31-52 (192)
454 2gco_A H9, RHO-related GTP-bin 93.1 0.041 1.4E-06 53.0 2.7 23 70-92 27-49 (201)
455 3def_A T7I23.11 protein; chlor 93.0 0.043 1.5E-06 55.7 3.0 23 70-92 38-60 (262)
456 1sky_E F1-ATPase, F1-ATP synth 93.0 0.053 1.8E-06 60.0 3.9 35 57-92 141-175 (473)
457 1njg_A DNA polymerase III subu 93.0 0.055 1.9E-06 52.5 3.6 42 198-241 126-167 (250)
458 2h92_A Cytidylate kinase; ross 93.0 0.038 1.3E-06 54.1 2.4 25 68-92 3-27 (219)
459 3crm_A TRNA delta(2)-isopenten 92.9 0.048 1.7E-06 57.5 3.2 24 69-92 6-29 (323)
460 2atx_A Small GTP binding prote 92.9 0.046 1.6E-06 52.0 2.7 22 70-91 20-41 (194)
461 1h65_A Chloroplast outer envel 92.8 0.047 1.6E-06 55.7 2.9 23 70-92 41-63 (270)
462 4tmk_A Protein (thymidylate ki 92.8 0.058 2E-06 53.4 3.4 27 67-93 2-28 (213)
463 2g3y_A GTP-binding protein GEM 92.7 0.057 1.9E-06 53.2 3.3 22 70-91 39-60 (211)
464 1p5z_B DCK, deoxycytidine kina 92.7 0.04 1.4E-06 55.9 2.2 28 66-93 22-49 (263)
465 3tmk_A Thymidylate kinase; pho 92.7 0.058 2E-06 53.6 3.3 28 66-93 3-30 (216)
466 3ld9_A DTMP kinase, thymidylat 92.7 0.066 2.3E-06 53.5 3.8 28 66-93 19-46 (223)
467 2ocp_A DGK, deoxyguanosine kin 92.7 0.061 2.1E-06 53.7 3.5 26 68-93 2-27 (241)
468 2hf9_A Probable hydrogenase ni 92.6 0.054 1.8E-06 53.1 2.9 24 69-92 39-62 (226)
469 4djt_A GTP-binding nuclear pro 92.6 0.027 9.1E-07 54.9 0.7 23 70-92 13-35 (218)
470 3cpj_B GTP-binding protein YPT 92.6 0.056 1.9E-06 53.0 3.1 23 70-92 15-37 (223)
471 2hup_A RAS-related protein RAB 92.5 0.055 1.9E-06 52.2 2.7 23 70-92 31-53 (201)
472 2yc2_C IFT27, small RAB-relate 92.5 0.027 9.3E-07 53.9 0.5 22 70-91 22-43 (208)
473 2x77_A ADP-ribosylation factor 92.5 0.038 1.3E-06 52.3 1.5 22 70-91 24-45 (189)
474 3cnl_A YLQF, putative uncharac 92.3 0.062 2.1E-06 54.9 3.0 25 69-93 100-124 (262)
475 3cmu_A Protein RECA, recombina 92.2 0.46 1.6E-05 61.1 11.3 36 57-92 719-756 (2050)
476 3foz_A TRNA delta(2)-isopenten 92.2 0.083 2.8E-06 55.4 3.8 25 68-92 10-34 (316)
477 4gzl_A RAS-related C3 botulinu 92.1 0.063 2.2E-06 51.9 2.7 23 69-91 31-53 (204)
478 3sr0_A Adenylate kinase; phosp 92.1 0.078 2.7E-06 52.2 3.4 23 70-92 2-24 (206)
479 4dcu_A GTP-binding protein ENG 92.1 0.06 2.1E-06 59.4 2.8 52 185-240 89-141 (456)
480 3q3j_B RHO-related GTP-binding 92.1 0.07 2.4E-06 52.1 3.0 22 70-91 29-50 (214)
481 2j0v_A RAC-like GTP-binding pr 92.1 0.065 2.2E-06 51.8 2.7 23 70-92 11-33 (212)
482 3eph_A TRNA isopentenyltransfe 91.9 0.081 2.8E-06 57.5 3.5 25 68-92 2-26 (409)
483 2orw_A Thymidine kinase; TMTK, 91.8 0.089 3.1E-06 50.7 3.3 53 198-255 76-137 (184)
484 3pxi_A Negative regulator of g 91.4 0.34 1.2E-05 56.9 8.3 23 70-92 523-545 (758)
485 2chg_A Replication factor C sm 91.2 0.1 3.6E-06 49.9 3.2 41 198-240 102-142 (226)
486 3p32_A Probable GTPase RV1496/ 91.2 0.12 3.9E-06 55.2 3.7 26 67-92 78-103 (355)
487 3n70_A Transport activator; si 91.1 0.12 4E-06 47.5 3.2 43 198-242 76-118 (145)
488 1sxj_D Activator 1 41 kDa subu 91.1 0.099 3.4E-06 54.7 3.0 42 198-241 133-174 (353)
489 3syl_A Protein CBBX; photosynt 91.0 0.12 4E-06 53.3 3.4 27 66-92 65-91 (309)
490 1puj_A YLQF, conserved hypothe 90.9 0.13 4.4E-06 53.1 3.6 25 68-92 120-144 (282)
491 2r62_A Cell division protease 90.9 0.057 1.9E-06 54.6 0.9 22 71-92 47-68 (268)
492 1ypw_A Transitional endoplasmi 90.9 0.037 1.3E-06 65.7 -0.5 33 61-93 504-536 (806)
493 3r7w_A Gtpase1, GTP-binding pr 90.9 0.13 4.4E-06 53.6 3.6 24 68-91 3-26 (307)
494 2x2e_A Dynamin-1; nitration, h 90.8 0.076 2.6E-06 56.5 1.8 23 70-92 33-55 (353)
495 1wxq_A GTP-binding protein; st 90.7 0.11 3.7E-06 56.4 3.0 41 155-204 181-221 (397)
496 3th5_A RAS-related C3 botulinu 90.1 0.046 1.6E-06 52.6 0.0 21 70-90 32-52 (204)
497 3euj_A Chromosome partition pr 90.7 0.35 1.2E-05 53.8 7.1 71 178-255 377-464 (483)
498 2hjg_A GTP-binding protein ENG 90.7 0.11 3.7E-06 57.0 2.9 23 70-92 5-27 (436)
499 1d2n_A N-ethylmaleimide-sensit 90.6 0.14 4.8E-06 51.9 3.5 26 66-91 62-87 (272)
500 3gmt_A Adenylate kinase; ssgci 90.4 0.14 4.7E-06 51.4 3.2 23 70-92 10-32 (230)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.7e-48 Score=415.81 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=197.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+.. +...+++|+|||+++++||++||+||||||||||||+|+|+++|+ +|+|.++|+++..
T Consensus 24 mi~v~~ls~~y~~---~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 24 MIKLSNITKVFHQ---GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSE 97 (366)
T ss_dssp CEEEEEEEEEEEC---SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCH
T ss_pred eEEEEeEEEEeCC---CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 6999999999853 112457999999999999999999999999999999999999885 9999999998642
Q ss_pred -----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 -----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.+|||+|++.+++.+||+||+.|....+ ..++++.+++++++++.+||.+.+++++ .+||||||
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqk 169 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQK 169 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 1357999999999999999999999987764 3467778889999999999999888866 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||+|||||+.+|++|||||||||||+.++..+++.|++++++ |.|||++||++ .++.++||||++|++|++++.|++
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999864 99999999997 578899999999999999999999
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
+++.
T Consensus 249 ~ev~ 252 (366)
T 3tui_C 249 SEVF 252 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-47 Score=393.35 Aligned_cols=219 Identities=24% Similarity=0.335 Sum_probs=190.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD--- 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--- 112 (697)
|+++||++.++. +...+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++...
T Consensus 2 l~~~~l~~~y~~---~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 2 VKLKNVTKTYKM---GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDD 75 (235)
T ss_dssp EEEEEEEEEEEE---TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred EEEEEEEEEeCC---CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHH
Confidence 789999998852 112357999999999999999999999999999999999999885 99999999986421
Q ss_pred ------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHH
Q 046969 113 ------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGE 185 (697)
Q Consensus 113 ------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGe 185 (697)
++.+|||+|++.+++.+||+||+.++...+.....+.++..+++.++++.+||.+. +++.+ .+|||||
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq 150 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQ 150 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHH
Confidence 23599999999999999999999998765422234566777889999999999875 47655 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||++++|++|+++..++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999875 999999999973 468999999999999999998
Q ss_pred hhh
Q 046969 265 AKL 267 (697)
Q Consensus 265 ~~~ 267 (697)
+++
T Consensus 229 ~~~ 231 (235)
T 3tif_A 229 LRG 231 (235)
T ss_dssp CC-
T ss_pred hhh
Confidence 765
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.5e-47 Score=415.87 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=197.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---V 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~ 111 (697)
.|+++||++.+. .+.+|+|||+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++. .
T Consensus 3 ~l~~~~l~~~yg-------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEEC-------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCH
Confidence 489999999873 467999999999999999999999999999999999999885 999999999864 2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.+||.+.+|+++ .+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHH
Confidence 2467999999999999999999999988765 3567788889999999999999988876 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++||++ .++..+||||++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999999999999999999875 99999999996 6899999999999999999999998764
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.6e-48 Score=415.60 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=194.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----C
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT----R 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~----~ 110 (697)
.|+++||++.+. ++.+|+|||+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y~-------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 589999999873 467999999999999999999999999999999999999885 99999999976 1
Q ss_pred ---cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHH
Q 046969 111 ---VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 111 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 187 (697)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.+|++++ +|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 12467999999999999999999999986543 23456667889999999999999998764 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+|||||+.+|++|||||||||||+..+.++++.|+++.+ .|.|+|++||+. .++..+||||++|++|+++..|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999998888764 699999999996 6899999999999999999999998
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
++.
T Consensus 225 el~ 227 (359)
T 3fvq_A 225 ELY 227 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.9e-47 Score=396.40 Aligned_cols=216 Identities=24% Similarity=0.382 Sum_probs=192.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--c-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--V- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~- 111 (697)
.|+++||++.+. ++++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. .
T Consensus 24 ~l~i~~l~~~y~-------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSFG-------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccc
Confidence 599999999873 356999999999999999999999999999999999999884 999999999863 1
Q ss_pred ----CCCeEEEEecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 ----DSGVLAYVTQENVLLGTLTVRETITYSA-HLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++||+|++.+++.+||+||+.+.. ..+ ..+.++.+++++++++.+||.+.+++.++ .||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 1245999999999999999999999964 332 23455566789999999999988888764 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999988899999999997 5788899999999999999999987
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+..
T Consensus 245 ~~~ 247 (263)
T 2olj_A 245 DLF 247 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-47 Score=400.53 Aligned_cols=217 Identities=27% Similarity=0.415 Sum_probs=192.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.++. .+.+|+|||+++++||+++|+||||||||||+|+|+|++++. +|+|.++|+++..
T Consensus 7 ~l~i~~ls~~y~~------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 7 ILKVEELNYNYSD------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEECTT------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHH
T ss_pred EEEEEEEEEEECC------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccc
Confidence 5899999998742 345999999999999999999999999999999999999884 9999999998631
Q ss_pred ----CCCeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHH
Q 046969 112 ----DSGVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 ----~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.+|||+|++ ..+..+||+||+.|+...+ ..+.++.+++++++++.+||.+.+++.++ .||||||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqk 149 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQK 149 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHH
T ss_pred cHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHH
Confidence 135699999986 3344789999999987653 34667778889999999999998888764 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA-RDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la-~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||+++|++. ++.++|||+++|++|++++.|++
T Consensus 150 QRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~ 228 (275)
T 3gfo_A 150 KRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNP 228 (275)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999998 56999999999985 67889999999999999999999
Q ss_pred hhHH
Q 046969 266 KLAV 269 (697)
Q Consensus 266 ~~~~ 269 (697)
+++.
T Consensus 229 ~~~~ 232 (275)
T 3gfo_A 229 KEVF 232 (275)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8754
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-47 Score=396.81 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=191.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. .+.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccc
Confidence 489999999873 356999999999999999999999999999999999999884 9999999987641
Q ss_pred ---------------CCCeEEEEecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-cCcccc
Q 046969 112 ---------------DSGVLAYVTQENVLLGTLTVRETITYSA-HLRLPSSMSKEDIKSHVDGTILELGLHDC-ADTVIG 174 (697)
Q Consensus 112 ---------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg 174 (697)
.++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+. +++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 152 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPV 152 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence 1246999999999999999999999964 332 23455566789999999999988 888664
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 175 ~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|
T Consensus 153 -----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l 226 (262)
T 1b0u_A 153 -----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFL 226 (262)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEE
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999988899999999997 5788899999999
Q ss_pred cCCeeeeecChhhH
Q 046969 255 SGGETVYFGEAKLA 268 (697)
Q Consensus 255 ~~G~iv~~G~~~~~ 268 (697)
++|++++.|++++.
T Consensus 227 ~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 227 HQGKIEEEGDPEQV 240 (262)
T ss_dssp ETTEEEEEECHHHH
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998764
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.8e-47 Score=386.80 Aligned_cols=211 Identities=29% Similarity=0.371 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++||++.+. ++++|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++|+++...
T Consensus 4 ~l~~~~l~~~y~-------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 4 ILRAENIKKVIR-------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCH
T ss_pred EEEEEeEEEEEC-------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCH
Confidence 489999999873 357999999999999999999999999999999999999885 99999999986321
Q ss_pred -------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 113 -------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 113 -------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
++.++||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ .|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 145 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----ELSGGE 145 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHH
Confidence 146999999999999999999999976543 23445556788999999999998888764 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecCh
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 265 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~ 265 (697)
||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+ ++||++++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999999888999999999963 45 89999999999999998863
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.1e-47 Score=391.66 Aligned_cols=218 Identities=27% Similarity=0.369 Sum_probs=193.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
-.|+++||++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|+++..
T Consensus 14 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83 (256)
T ss_dssp CCEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCH
T ss_pred CeEEEEEEEEEEC-------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccH
Confidence 3589999999873 357999999999999999999999999999999999999885 9999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.+|||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ ..|||||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv 155 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKL 155 (256)
T ss_dssp HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHH
Confidence 1356999999999999999999999976543 2344555677899999999998888876 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|++++..
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987899999999997 5677889999999999999999988754
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
+
T Consensus 235 ~ 235 (256)
T 1vpl_A 235 E 235 (256)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1e-46 Score=406.91 Aligned_cols=220 Identities=23% Similarity=0.415 Sum_probs=197.3
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR- 110 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~- 110 (697)
.+..|+++||++.++ +++++|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++.
T Consensus 11 ~~~~l~~~~l~~~y~------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~ 81 (355)
T 1z47_A 11 GSMTIEFVGVEKIYP------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTD 81 (355)
T ss_dssp CCEEEEEEEEEECCT------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTT
T ss_pred CCceEEEEEEEEEEc------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCc
Confidence 345799999998762 1356999999999999999999999999999999999999885 999999999863
Q ss_pred --cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 111 --VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 111 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
..++.+|||+|+..+++.+||+||+.|....+ ..++++.+++++++++.+||.+.+|+++ .+||||||||
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QR 153 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQR 153 (355)
T ss_dssp CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHH
Confidence 22467999999999999999999999987654 3456677788999999999999988876 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|+|++||++ .++..+||++++|++|+++..|++++
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999875 99999999996 57889999999999999999999987
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
+.
T Consensus 233 l~ 234 (355)
T 1z47_A 233 VY 234 (355)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-46 Score=406.83 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=195.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---V 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~ 111 (697)
.|+++||++.+. ++++|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++. .
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKFG-------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEESS-------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEEC-------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 489999999862 357999999999999999999999999999999999999885 999999999863 2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.+||.+.+++++ .+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHH
Confidence 2467999999999999999999999987654 2456677788999999999999988876 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||||+.+|++|||||||||||+.++..+.+.|++++++ |.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 99999999996 5788999999999999999999998764
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-46 Score=406.97 Aligned_cols=216 Identities=24% Similarity=0.397 Sum_probs=193.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---V 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~ 111 (697)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++. .
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYFG-------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCCh
Confidence 489999999873 357999999999999999999999999999999999999885 999999999863 2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|+..+++.+||+||+.|..+.+ ..++++.+++++++++.+||.+.+++++ .+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHH
Confidence 2467999999999999999999999976543 2344555678999999999999988876 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999765 99999999996 5788999999999999999999998764
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3e-46 Score=406.42 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=195.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVFG-------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccc
Confidence 489999999873 357999999999999999999999999999999999999885 9999999987521
Q ss_pred ------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH
Q 046969 112 ------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE 185 (697)
Q Consensus 112 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 185 (697)
.++.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.+||.+.+++++ .+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHH
Confidence 2467999999999999999999999987654 3456677788999999999999988876 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++||++ .++..+||++++|++|+++..|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 99999999996 57889999999999999999999
Q ss_pred hhhHH
Q 046969 265 AKLAV 269 (697)
Q Consensus 265 ~~~~~ 269 (697)
++++.
T Consensus 224 ~~~l~ 228 (372)
T 1g29_1 224 PDEVY 228 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6.6e-47 Score=392.81 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=190.0
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++||++.+. ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|+++...
T Consensus 7 ~l~i~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 7 ILRTENIVKYFG-------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEET-------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred EEEEeeeEEEEC-------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 589999999873 356999999999999999999999999999999999999884 99999999986421
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccCccccCccC
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHL-RLPS---------SMSKEDIKSHVDGTILELGLHDCADTVIGNWHL 178 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 178 (697)
++.++||+|++.+++.+||+||+.+.... +... ....++.+++++++++.+||.+.+++.++
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 152 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG---- 152 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch----
Confidence 24599999999999999999999987543 1100 01223445678999999999988888764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.++||++++|++|+
T Consensus 153 -~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 153 -ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQ 230 (257)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTE
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999888999999999984 6788999999999999
Q ss_pred eeeecChhh
Q 046969 259 TVYFGEAKL 267 (697)
Q Consensus 259 iv~~G~~~~ 267 (697)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999999876
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-46 Score=405.53 Aligned_cols=216 Identities=27% Similarity=0.425 Sum_probs=194.4
Q ss_pred eEEEEEEEEEeccccccccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 046969 35 FLVWENLFAVLPNFGNNKPTKR--LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~--iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~- 111 (697)
.|+++||++.+. +++ +|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y~-------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVFK-------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEEG-------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEET
T ss_pred EEEEEeEEEEEC-------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccc
Confidence 489999999873 356 999999999999999999999999999999999999885 9999999987521
Q ss_pred -------CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH
Q 046969 112 -------DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 112 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
.++.+|||+|+..+++.+||+||+.|....+ ..++++.+++++++++.+||.+.+|+++ .+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHH
Confidence 2467999999999999999999999976543 3456677788999999999999988876 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ .++..++|++++|++|+++..|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 99999999997 5789999999999999999999
Q ss_pred ChhhHH
Q 046969 264 EAKLAV 269 (697)
Q Consensus 264 ~~~~~~ 269 (697)
+++++.
T Consensus 224 ~~~~l~ 229 (353)
T 1oxx_K 224 KPEDLY 229 (353)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998754
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-46 Score=385.46 Aligned_cols=214 Identities=25% Similarity=0.397 Sum_probs=187.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++||++.+. .+++|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|+++...
T Consensus 6 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred eEEEEeEEEEEC-------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCH
Confidence 589999999873 356999999999999999999999999999999999999884 99999999986321
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCcccCccccCccCCCCCHHHHH
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG-LHDCADTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerq 187 (697)
++.++||+|++.+++.+||+||+.+..... ...++.++.++++++.++ |.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~q 146 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHH
Confidence 245999999999999999999999864211 122344567888999994 988777765 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999987899999999997 57889999999999999999998876
Q ss_pred H
Q 046969 268 A 268 (697)
Q Consensus 268 ~ 268 (697)
.
T Consensus 226 ~ 226 (240)
T 1ji0_A 226 L 226 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.9e-46 Score=388.71 Aligned_cols=214 Identities=26% Similarity=0.336 Sum_probs=190.1
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
..|+++||++.+. .+++|+|||+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~-------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQ 79 (266)
T ss_dssp CEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSC
T ss_pred ceEEEEeEEEEeC-------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCC
Confidence 4699999999873 467999999999999999999999999999999999999885 89999999986421
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
++.++|++|++.+++.+||+||+.+..... ..++.+++++++++.+||.+..++.++ .||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QR 149 (266)
T 4g1u_C 80 PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQR 149 (266)
T ss_dssp HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHH
T ss_pred HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHH
Confidence 246999999999988899999999876533 122345678899999999998888764 799999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 189 LSIALEILT------KPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 189 vsIa~~Ll~------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++|||+++|++|++++
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999 99999999999999999999999999999875 57999999997 57888999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 229 ~g~~~~~ 235 (266)
T 4g1u_C 229 CGTPEEV 235 (266)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 9998865
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-46 Score=406.47 Aligned_cols=216 Identities=22% Similarity=0.369 Sum_probs=188.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---V 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~ 111 (697)
.|+++||++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++. .
T Consensus 11 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRFG-------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEEC-------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCCh
Confidence 489999999873 356999999999999999999999999999999999999885 999999999863 2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.+|||+|+..+++.+||+||+.|....+ ..++++.+++++++++.+||.+.+++++ .+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 2457999999999999999999999975443 3456677788999999999999988876 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999875 99999999996 5788999999999999999999998764
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-45 Score=398.06 Aligned_cols=210 Identities=25% Similarity=0.407 Sum_probs=188.3
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---D 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~ 112 (697)
++++||++.+. ++ +|+|+|+++++||+++|+||||||||||||+|+|+.+++ +|+|.++|+++.. .
T Consensus 2 l~~~~l~~~y~-------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~ 70 (348)
T 3d31_A 2 IEIESLSRKWK-------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70 (348)
T ss_dssp EEEEEEEEECS-------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHH
T ss_pred EEEEEEEEEEC-------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchh
Confidence 78899998862 35 999999999999999999999999999999999999885 9999999998642 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.+|||+|+..+++.+||+||+.|....+. .+++ ++++++++.+||++.+|+++ .+|||||||||+||
T Consensus 71 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalA 139 (348)
T 3d31_A 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALA 139 (348)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 3569999999999999999999999876542 1112 67889999999999998876 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
|||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++||++ .++..++|++++|++|+++..|+++++
T Consensus 140 raL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp HHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999976 499999999996 578899999999999999999998865
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-45 Score=377.23 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=185.0
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---VD 112 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~~ 112 (697)
++++||++.+. . +|+|+|+++++ |+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ..
T Consensus 2 l~~~~l~~~y~-------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRLG-------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEET-------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEeC-------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchh
Confidence 67899999872 2 49999999999 999999999999999999999999885 999999999863 22
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
++.+|||+|++.+++.+||+||+.+....+ .....+++++++++.+||.+.+++.++ .|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHH
Confidence 457999999999999999999999864322 112225678899999999988888764 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|++++.|++++..
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999764 99999999997 5788999999999999999999987653
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-45 Score=382.92 Aligned_cols=221 Identities=26% Similarity=0.347 Sum_probs=187.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--C
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--D 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~ 112 (697)
.++++||++.+.. .+...+.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~y~~--~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHR--GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEI 76 (266)
T ss_dssp CEEEEEEEEEEST--TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHH
T ss_pred EEEEEEEEEEecC--CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHh
Confidence 4889999998741 0000157999999999999999999999999999999999999884 9999999998642 2
Q ss_pred CCeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--cccCccccCccCCCCCHHHHHHH
Q 046969 113 SGVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH--DCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 113 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqRv 189 (697)
++.+|||+|++ .+++.+||+||+.+...... +.++.+++++++++.+||. +..++.+ ..|||||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv 147 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRV 147 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHH
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHH
Confidence 45799999995 56677999999998653321 1222345688899999999 8888876 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~ 269 (697)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++..+||++++|++|++++.|++++..
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999999877999999999984 677889999999999999999988654
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
.
T Consensus 227 ~ 227 (266)
T 2yz2_A 227 E 227 (266)
T ss_dssp H
T ss_pred c
Confidence 3
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-45 Score=379.57 Aligned_cols=216 Identities=24% Similarity=0.311 Sum_probs=180.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCcC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR--LSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~~ 112 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||||+|+|+ +++ .+|+|.++|+++...
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 3 QLEIRDLWASID-------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTS
T ss_pred eEEEEeEEEEEC-------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCC
Confidence 489999999873 35799999999999999999999999999999999998 555 489999999986321
Q ss_pred ------CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-CcccCccccCccCCC-CCHH
Q 046969 113 ------SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-HDCADTVIGNWHLRG-ISGG 184 (697)
Q Consensus 113 ------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~-LSGG 184 (697)
+..++||+|++.+++.+||+||+.+............++..++++++++.+|| .+..|+.++ . ||||
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgG 147 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFSGG 147 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC----
T ss_pred CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCCHH
Confidence 23489999999999999999999986532111112334456678899999999 577887664 5 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh-ccceeeecCCeeeeec
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL-FDDLFLLSGGETVYFG 263 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~iv~~G 263 (697)
|||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++..+ ||++++|++|++++.|
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g 226 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATG 226 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999777999999999984 56667 5999999999999999
Q ss_pred Chh
Q 046969 264 EAK 266 (697)
Q Consensus 264 ~~~ 266 (697)
+++
T Consensus 227 ~~~ 229 (250)
T 2d2e_A 227 GPE 229 (250)
T ss_dssp SHH
T ss_pred CHH
Confidence 987
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.9e-45 Score=384.57 Aligned_cols=219 Identities=23% Similarity=0.320 Sum_probs=185.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--c
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--V 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~ 111 (697)
..|+++||++.+. .+++|+|+|+++++||+++|+||||||||||||+|+|+++++ +|+|.++|+++. .
T Consensus 20 ~~l~~~~l~~~y~-------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---
T ss_pred ceEEEEeEEEEEC-------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEccccc
Confidence 3699999999873 357999999999999999999999999999999999999885 999999998753 1
Q ss_pred -----CCCeEEEEecCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH
Q 046969 112 -----DSGVLAYVTQENVL--LGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -----~~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 183 (697)
.++.++||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+.+++.++ .|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSg 164 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG-----YLST 164 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----hCCH
Confidence 13569999999754 3457999999885321100 011123445678899999999988888764 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTV--ISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tv--i~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|| |+++|++ .++.++||++++|++|++++
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998779999 9999997 46778999999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 244 ~g~~~~~ 250 (279)
T 2ihy_A 244 QGAVEDI 250 (279)
T ss_dssp EEEHHHH
T ss_pred ECCHHHH
Confidence 9988754
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.1e-44 Score=370.18 Aligned_cols=210 Identities=28% Similarity=0.332 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++.+.. ++.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.+ ++
T Consensus 4 ~l~i~~l~~~y~~------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQ 66 (253)
T ss_dssp EEEEEEEEEEETT------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CS
T ss_pred eEEEeeEEEEeCC------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ec
Confidence 4899999998731 357999999999999999999999999999999999999885 999982 35
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIAL 193 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~ 193 (697)
.++||+|++.+++.+||+||+.+....... .....++.+++++++++.+||.+.+++.+ ..|||||||||+||+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIAR 141 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHH
Confidence 699999999999999999999987532210 00112334567889999999999888866 479999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhH
Q 046969 194 EILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++||++++|++|+ ++.|++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999999999999999999999887 99999999997 57788999999999999 999988764
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.5e-44 Score=375.39 Aligned_cols=221 Identities=29% Similarity=0.362 Sum_probs=186.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~ 111 (697)
..|+++||++.+. ++++|+|+|+++++||+++|+||||||||||||+|+|+. ++ .+|+|.++|+++..
T Consensus 19 ~~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 19 HMLSIKDLHVSVE-------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLA 88 (267)
T ss_dssp -CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGG
T ss_pred ceEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCc
Confidence 3599999999873 357999999999999999999999999999999999984 34 48999999998632
Q ss_pred C------CCeEEEEecCCCCCCCCCHHHHHHHHhh-cc---CCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCC
Q 046969 112 D------SGVLAYVTQENVLLGTLTVRETITYSAH-LR---LPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRG 180 (697)
Q Consensus 112 ~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 180 (697)
. +..++||+|++.+++.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++.++ .+
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~ 164 (267)
T 2zu0_C 89 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VG 164 (267)
T ss_dssp SCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TT
T ss_pred CCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cC
Confidence 1 1349999999999999999999987542 11 111234555567889999999996 56777653 25
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh-ccceeeecCCee
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL-FDDLFLLSGGET 259 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l-~D~v~lL~~G~i 259 (697)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ++..+ ||++++|++|++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999777999999999974 55565 899999999999
Q ss_pred eeecChhhHH
Q 046969 260 VYFGEAKLAV 269 (697)
Q Consensus 260 v~~G~~~~~~ 269 (697)
++.|++++..
T Consensus 244 ~~~g~~~~~~ 253 (267)
T 2zu0_C 244 VKSGDFTLVK 253 (267)
T ss_dssp EEEECTTHHH
T ss_pred EEEcCHHHHh
Confidence 9999988654
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.4e-44 Score=378.97 Aligned_cols=213 Identities=28% Similarity=0.430 Sum_probs=178.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.|+++||++.++ ..+.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.+||+++...
T Consensus 53 ~i~~~~vs~~y~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 53 RIEFENVHFSYA------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CEEEEEEEEESS------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCH
T ss_pred eEEEEEEEEEcC------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCH
Confidence 599999999874 2467999999999999999999999999999999999999885 99999999987421
Q ss_pred ---CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------ccCccccCccCCCCC
Q 046969 113 ---SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-------CADTVIGNWHLRGIS 182 (697)
Q Consensus 113 ---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LS 182 (697)
++.+|||+|++.+|+ .||+|||.|+... ...++ +++.++..++.+ ..++.+|. ....||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LS 192 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGNDE----VEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLS 192 (306)
T ss_dssp HHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCHHH----HHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCC
T ss_pred HHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCHHH----HHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCC
Confidence 356999999999986 4999999986421 22322 334444444433 45666664 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|+|+++|+++ .+. .||+|++|++|++++.
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~-~aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVV-NADQILVIKDGCIVER 269 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHH-TCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHH-cCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 799999999974 454 4999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++..+
T Consensus 270 G~~~el~~ 277 (306)
T 3nh6_A 270 GRHEALLS 277 (306)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99987654
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8e-44 Score=367.74 Aligned_cols=205 Identities=26% Similarity=0.374 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++. ++|+|+|+++++||+++|+||||||||||||+|+|++++ . |+|.++|++...
T Consensus 4 ~l~~~~l~~~-----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES-----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET-----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE-----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCH
Confidence 4788998862 589999999999999999999999999999999999987 5 999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
.++.++||+|++.+++.+||+||+.+... +. .. +++++++++.+||.+..++.+ ..|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHH
Confidence 12469999999999999999999997521 11 11 456788999999998888765 47999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 190 SIALEILTKPQ-------LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 190 sIa~~Ll~~P~-------lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
+||++|+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|++|++++.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999 9999999999999999999999999987799999999997 567789999999999999999
Q ss_pred cChhhH
Q 046969 263 GEAKLA 268 (697)
Q Consensus 263 G~~~~~ 268 (697)
|++++.
T Consensus 215 g~~~~~ 220 (249)
T 2qi9_C 215 GRREEV 220 (249)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 988754
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.8e-44 Score=375.80 Aligned_cols=216 Identities=28% Similarity=0.409 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.|+++||++.+.. + ..+.+|+|||+.+++||+++|+||||||||||||+|+|++++. +|+|.++|+++..
T Consensus 16 ~l~~~~l~~~y~~---~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 16 LVKFQDVSFAYPN---H-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CEEEEEEEECCTT---C-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCC---C-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCH
Confidence 5999999987631 0 1367999999999999999999999999999999999999884 9999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKED-----IKSHVDGTILEL--GLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+++ .||+||+.+..... ...++ ....++++++.+ ||.+..++.+ ..||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LS 158 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----NQLS 158 (271)
T ss_dssp HHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----TTSC
T ss_pred HHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----CCCC
Confidence 1346999999998887 59999999864211 11111 122356677777 6776666654 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++|++. .+ ..||++++|++|++++
T Consensus 159 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCE 236 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 4899999999974 44 4599999999999999
Q ss_pred ecChhhHH
Q 046969 262 FGEAKLAV 269 (697)
Q Consensus 262 ~G~~~~~~ 269 (697)
.|++++..
T Consensus 237 ~g~~~~l~ 244 (271)
T 2ixe_A 237 QGTHLQLM 244 (271)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99988654
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.8e-44 Score=368.52 Aligned_cols=213 Identities=28% Similarity=0.423 Sum_probs=178.6
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
..++++||++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++...
T Consensus 6 ~~~~~~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALAD 77 (247)
T ss_dssp EEEEEEEEEEESST-----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSC
T ss_pred CceeEEEEEEEeCC-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCC
Confidence 36899999998731 1357999999999999999999999999999999999999885 99999999986421
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCcc-------ccCccCCCC
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTV-------IGNWHLRGI 181 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~L 181 (697)
++.++||+|++.+++ .||+||+.+... ..+. +.++++++.+++.+..++. ++ ..+..|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~L 146 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSV----EKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGL 146 (247)
T ss_dssp HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCC
T ss_pred HHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCC
Confidence 346999999998886 599999987521 1222 3456677778876655443 22 235689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||+++|++. .+ +.||++++|++|++++
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 5999999999985 44 5699999999999999
Q ss_pred ecChhhH
Q 046969 262 FGEAKLA 268 (697)
Q Consensus 262 ~G~~~~~ 268 (697)
.|++++.
T Consensus 224 ~g~~~~l 230 (247)
T 2ff7_A 224 QGKHKEL 230 (247)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9998764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-44 Score=367.22 Aligned_cols=213 Identities=25% Similarity=0.384 Sum_probs=180.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++ ..+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|+++..
T Consensus 2 l~~~~l~~~y~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 2 LSARHVDFAYD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72 (243)
T ss_dssp EEEEEEEECSS------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCS
T ss_pred EEEEEEEEEeC------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 78999998762 2357999999999999999999999999999999999999874 8999999998631
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCcccc------CccCCCCCHH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIG------NWHLRGISGG 184 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGG 184 (697)
.++.++||+|++.+++. ||+||+.+... + ...+ +.++++++.+++.+..++... +..+..||||
T Consensus 73 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 143 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (243)
T ss_dssp CCTTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HHHhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHH
Confidence 24569999999998874 99999987521 1 1222 346778888999887665431 1245689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
|||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++ +|+|||+++|++. .+ +.||++++|++|++++.|+
T Consensus 144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999997 6999999999974 44 5699999999999999999
Q ss_pred hhhHH
Q 046969 265 AKLAV 269 (697)
Q Consensus 265 ~~~~~ 269 (697)
+++..
T Consensus 221 ~~~~~ 225 (243)
T 1mv5_A 221 HNELV 225 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-44 Score=360.30 Aligned_cols=201 Identities=21% Similarity=0.341 Sum_probs=174.2
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
-+..|+++||++.+. . ++|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 7 ~~~~l~~~~ls~~y~-------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~ 75 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYD-------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK 75 (214)
T ss_dssp --CEEEEEEEEEESS-------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG
T ss_pred CCceEEEEEEEEEeC-------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhh
Confidence 356799999999862 3 6999999999999999999999999999999999999884 9999999988642
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 112 DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 112 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.++.++||+|++.+++.+||+||+.+....+.. . .+ +++++++++.+||.+. ++.+ ..|||||||||+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~l 144 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQL 144 (214)
T ss_dssp GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHH
T ss_pred hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHH
Confidence 346799999999999999999999997654311 1 11 3567889999999877 6655 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
|++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++..++|++++++
T Consensus 145 araL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 99999999999999999999999999999999999877899999999985 6778899988764
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.3e-43 Score=362.47 Aligned_cols=208 Identities=19% Similarity=0.291 Sum_probs=179.4
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--DS 113 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~~ 113 (697)
++++||++.+.. +...+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |. +|+|.++|++... .+
T Consensus 2 l~~~~l~~~y~~---~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~ 73 (263)
T 2pjz_A 2 IQLKNVGITLSG---KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNY 73 (263)
T ss_dssp EEEEEEEEEEEE---ETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCC
T ss_pred EEEEEEEEEeCC---CCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHh
Confidence 789999998731 0012679999999999 9999999999999999999999999 75 9999999987531 14
Q ss_pred CeEE-EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHHHHH
Q 046969 114 GVLA-YVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 114 ~~i~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
+.++ ||+|++.+ .+||+||+.+...+. ... +++++++++.+||. +..++.+ ..|||||||||+|
T Consensus 74 ~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~l 139 (263)
T 2pjz_A 74 IRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRT 139 (263)
T ss_dssp TTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHH
T ss_pred hheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 5799 99999887 889999999976543 111 34578899999998 8888766 4799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcc-ceeeecCCeeeeecChhhHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFD-DLFLLSGGETVYFGEAKLAV 269 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D-~v~lL~~G~iv~~G~~~~~~ 269 (697)
|++|+.+|++|+|||||+|||+.++..+++.|+++++ |||+++|++ .++.++|| ++++|++|++++.|++++..
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 140 SLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998754 999999997 46778999 99999999999999988654
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.4e-42 Score=359.05 Aligned_cols=214 Identities=26% Similarity=0.419 Sum_probs=176.4
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-- 111 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-- 111 (697)
..++++||++.+.. . ..+.+|+|+|+++++||+++|+||||||||||||+|+|++++ +|+|.++|+++..
T Consensus 16 ~~l~i~~l~~~y~~---~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~ 87 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK---Q-TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYN 87 (260)
T ss_dssp CCEEEEEEEECCTT---C-CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBC
T ss_pred CeEEEEEEEEEeCC---C-CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcC
Confidence 46999999998742 1 125699999999999999999999999999999999999864 7999999998632
Q ss_pred ---CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------ccCccccCccCCCC
Q 046969 112 ---DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-------CADTVIGNWHLRGI 181 (697)
Q Consensus 112 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~L 181 (697)
.++.++||+|++.+++ .||+||+.++.. ...+ +.+.+.++.+++.+ ..|+.++. .+..|
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~L 156 (260)
T 2ghi_A 88 RNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKL 156 (260)
T ss_dssp HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCC
T ss_pred HHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcC
Confidence 1356999999999886 599999987521 1122 23445566666543 34554443 45789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||+++|++. .+ +.||++++|++|++++
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVE 233 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 899999999985 44 5699999999999999
Q ss_pred ecChhhHH
Q 046969 262 FGEAKLAV 269 (697)
Q Consensus 262 ~G~~~~~~ 269 (697)
.|++++..
T Consensus 234 ~g~~~~l~ 241 (260)
T 2ghi_A 234 KGTHKDLL 241 (260)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99987653
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.2e-42 Score=350.74 Aligned_cols=204 Identities=22% Similarity=0.367 Sum_probs=166.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++.++. ..+++|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g-------- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG-------- 69 (229)
T ss_dssp EEEEEEEEECSST-----TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------
T ss_pred eEEEEEEEEEeCC-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------
Confidence 5899999987631 2467999999999999999999999999999999999999885 99999998
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------CccccCccCCCCCHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCA-------DTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGGerq 187 (697)
.++||+|++.+++. ||+||+.++.. .... .+++.++.+++.+.. ++.++. .+..|||||||
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkq 137 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRA 137 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHH
Confidence 38999999998886 99999987531 1111 123344444554322 233332 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT-LRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~-L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+|||+|+.+|++|+|||||+|||+.++..+++. +++++ +|+|||+++|++. .+ ..||++++|++|++++.|+++
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 214 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFS 214 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999997 45654 4899999999973 45 469999999999999999987
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+..
T Consensus 215 ~~~ 217 (229)
T 2pze_A 215 ELQ 217 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=377.61 Aligned_cols=213 Identities=22% Similarity=0.286 Sum_probs=180.7
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
..|+++||++.++. ..+.+|+|||+++++||+++|+|||||||||||++|+|+++ . +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESSS-----SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEecC-----CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCC
Confidence 46999999998742 24679999999999999999999999999999999999986 3 89999999986421
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccC------ccCCCCC
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN------WHLRGIS 182 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LS 182 (697)
++.++||+|++.+|+ +||+||+.+.. ... +++++++++.++|.+..+++... .....||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 357999999999997 59999996421 122 24577889999998887776542 1223499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|||||||+|||||+.+|++|||||||||||+.++..+.+.|+++. .|+|+|+++|++. ....||||++|++|+++..
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4899999999963 4567999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|++++..
T Consensus 235 g~~~el~ 241 (390)
T 3gd7_A 235 DSILELY 241 (390)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 9998764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.5e-42 Score=350.64 Aligned_cols=207 Identities=24% Similarity=0.367 Sum_probs=165.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++.+.. ..+.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-----SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESCT-----TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------
T ss_pred eEEEEEEEEEeCC-----CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------
Confidence 4899999998731 2467999999999999999999999999999999999999874 99999998
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCc-ccCccccCccCCCCCHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDG---TILELGLHD-CADTVIGNWHLRGISGGEKKRLS 190 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvs 190 (697)
.++||+|++.+ +.+||+||+.+.... ..+.. +.+.+ +.+.+++.+ ..++.++ ..+..|||||||||+
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~ 137 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL------EEPYY-RSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVS 137 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTHH-HHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHHH-HHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHH
Confidence 38999999865 578999999985421 11111 11111 222333322 1222332 245689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 191 IALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR---NIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 191 Ia~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~---~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|||||+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||+++|++. .+ +.||++++|++|++++.|++++
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999995 443 4899999999985 34 5799999999999999999876
Q ss_pred HH
Q 046969 268 AV 269 (697)
Q Consensus 268 ~~ 269 (697)
..
T Consensus 215 ~~ 216 (237)
T 2cbz_A 215 LL 216 (237)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-40 Score=382.45 Aligned_cols=214 Identities=24% Similarity=0.369 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++|+++.++. .++++|+|+|+++++||++||+||||||||||+|+|+|.++|+ +|+|.+||+++..
T Consensus 341 ~i~~~~v~~~y~~-----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKL 412 (582)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCH
Confidence 5999999998742 1267999999999999999999999999999999999999885 8999999998632
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------ccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-------CADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LS 182 (697)
.++.++||+|++.+++. ||+||+.++.. + ..++ ++++++++.+++.+ ..||.+|+ ....||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LS 482 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLS 482 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCCH----HHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCC
Confidence 24679999999999975 99999998531 1 1222 34566677777654 35666764 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++++ |+|+|+++|+++ .+ +.||++++|++|++++.
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIER 559 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999974 44 57999999999999999
Q ss_pred cChhhHH
Q 046969 263 GEAKLAV 269 (697)
Q Consensus 263 G~~~~~~ 269 (697)
|++++..
T Consensus 560 g~~~~l~ 566 (582)
T 3b5x_A 560 GRHADLL 566 (582)
T ss_pred CCHHHHH
Confidence 9988654
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-40 Score=383.01 Aligned_cols=215 Identities=26% Similarity=0.374 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++|+++.++. .++++|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++...
T Consensus 341 ~i~~~~v~~~y~~-----~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTL 412 (582)
T ss_dssp CEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCH
T ss_pred cEEEEEEEEEcCC-----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCH
Confidence 5999999998742 1267999999999999999999999999999999999999885 99999999986421
Q ss_pred ---CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------ccCccccCccCCCCC
Q 046969 113 ---SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-------CADTVIGNWHLRGIS 182 (697)
Q Consensus 113 ---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LS 182 (697)
++.++||+|++.+++. ||+||+.++.. + ..++ ++++++++.+++.+ ..|+.+|+ ....||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LS 482 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLS 482 (582)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSC
T ss_pred HHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCC
Confidence 3569999999999985 99999998531 1 2233 33566667677654 45677765 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++++ |+|+|+++|+++ .+ +.||++++|++|++++.
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVER 559 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 999999999985 34 57999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++..+
T Consensus 560 g~~~~l~~ 567 (582)
T 3b60_A 560 GTHSELLA 567 (582)
T ss_dssp ECHHHHHH
T ss_pred cCHHHHHH
Confidence 99887643
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.6e-40 Score=382.45 Aligned_cols=215 Identities=27% Similarity=0.387 Sum_probs=180.7
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
-.++++|+++.++. .++++|+|+|+++++||++||+||||||||||+++|+|.++|. +|+|.+||+++...
T Consensus 338 ~~i~~~~v~~~y~~-----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~ 409 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFL 409 (578)
T ss_dssp CCEEEEEEEECSCS-----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSC
T ss_pred CeEEEEEEEEEcCC-----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCC
Confidence 35999999998742 2467999999999999999999999999999999999999985 99999999987421
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCC
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGI 181 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~L 181 (697)
++.++||+|++.+++. ||+||+.++. + ..++++ +.+.++..++ .+..||.+|+ ...+|
T Consensus 410 ~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~L 478 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKL 478 (578)
T ss_dssp HHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTS
T ss_pred HHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcC
Confidence 3569999999999987 9999998753 1 123333 3344444443 4456777775 45689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++. +|+|+|+++|+++ .+ +.||++++|++|++++
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVE 555 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999985 4799999999985 34 5699999999999999
Q ss_pred ecChhhHHH
Q 046969 262 FGEAKLAVE 270 (697)
Q Consensus 262 ~G~~~~~~~ 270 (697)
.|++++..+
T Consensus 556 ~g~~~el~~ 564 (578)
T 4a82_A 556 TGTHRELIA 564 (578)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999987653
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-40 Score=384.92 Aligned_cols=216 Identities=28% Similarity=0.454 Sum_probs=181.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---- 111 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---- 111 (697)
++++||++.++. + +++++|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++..
T Consensus 342 i~~~~v~~~y~~---~-~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 414 (595)
T 2yl4_A 342 LEFKNVHFAYPA---R-PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPV 414 (595)
T ss_dssp EEEEEEEEECSS---C-TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHH
T ss_pred EEEEEEEEEeCC---C-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHH
Confidence 999999998842 1 1356999999999999999999999999999999999999885 9999999998642
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------cccCccccCccCCCCCH
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-------DCADTVIGNWHLRGISG 183 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSG 183 (697)
.++.++||+|++.+++. ||+||+.++.... ...++ ++++++++.+++. +..|+.+|+ ...+|||
T Consensus 415 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSg 486 (595)
T 2yl4_A 415 WLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSG 486 (595)
T ss_dssp HHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCH
T ss_pred HHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccCH----HHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCH
Confidence 13569999999999875 9999999864211 11222 3456677777764 346777765 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeec
Q 046969 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 184 GerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
|||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||++++|++|++++.|
T Consensus 487 Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYG 563 (595)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999876 899999999974 44 569999999999999999
Q ss_pred ChhhHH
Q 046969 264 EAKLAV 269 (697)
Q Consensus 264 ~~~~~~ 269 (697)
++++..
T Consensus 564 ~~~~l~ 569 (595)
T 2yl4_A 564 KHEELL 569 (595)
T ss_dssp CSCC--
T ss_pred CHHHHH
Confidence 988653
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-40 Score=382.77 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=180.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD- 112 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~- 112 (697)
-.++++|+++.++. ..+++|+|+|+++++||++||+||||||||||+++|+|.+++. +|+|.+||+++...
T Consensus 340 ~~i~~~~v~~~y~~-----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVK 411 (587)
T ss_dssp CCEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBC
T ss_pred CcEEEEEEEEEcCC-----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCC
Confidence 36999999998742 3467999999999999999999999999999999999999985 99999999986421
Q ss_pred ----CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCCcccCccccCccCCCC
Q 046969 113 ----SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL-------GLHDCADTVIGNWHLRGI 181 (697)
Q Consensus 113 ----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~L 181 (697)
++.++||+|++.+++. ||+||+.++.. ..++++.. +.++.. .+.+..|+.+|+ ...+|
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~----~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~L 480 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIV----EAAKIAQIHDFIISLPEGYDSRVER-GGRNF 480 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHH----HHHHHTTCHHHHHTSSSGGGCEECS-SSCSS
T ss_pred HHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHH----HHHHHhCcHHHHHhcccchhhHhcC-CCCCc
Confidence 4579999999999976 99999987531 22333322 223333 344456777765 55789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
|||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++ . ...||+|++|++|++++
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAG 557 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999974 5899999999974 3 46899999999999999
Q ss_pred ecChhhHHH
Q 046969 262 FGEAKLAVE 270 (697)
Q Consensus 262 ~G~~~~~~~ 270 (697)
.|++++..+
T Consensus 558 ~g~~~el~~ 566 (587)
T 3qf4_A 558 FGTHKELLE 566 (587)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999987654
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-40 Score=380.71 Aligned_cols=213 Identities=24% Similarity=0.413 Sum_probs=178.2
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++|+++.++ +++++|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++...
T Consensus 354 ~i~~~~v~~~y~------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 354 EIEFKNVWFSYD------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKR 424 (598)
T ss_dssp CEEEEEEECCSS------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEECC------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCH
Confidence 599999998764 2467999999999999999999999999999999999999985 99999999987421
Q ss_pred ---CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-------CcccCccccCccCCCCC
Q 046969 113 ---SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL-------HDCADTVIGNWHLRGIS 182 (697)
Q Consensus 113 ---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LS 182 (697)
++.++||+|++.+++. ||+||+.++.. ..++++ +.+.++..++ .+..|+.+|+ ....||
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LS 493 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLS 493 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSC
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCC
Confidence 3579999999999875 99999987521 122233 2333333333 3456677764 446899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEM 570 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEEC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999985 5899999999986 44 55999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++..+
T Consensus 571 g~~~~l~~ 578 (598)
T 3qf4_B 571 GKHDELIQ 578 (598)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHh
Confidence 99987653
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-39 Score=342.63 Aligned_cols=199 Identities=21% Similarity=0.369 Sum_probs=153.6
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.++++||++. .+.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|
T Consensus 40 ~l~~~~l~~~---------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g-------- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG-------- 99 (290)
T ss_dssp -------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------
T ss_pred eEEEEEEEEc---------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------
Confidence 5888998873 246999999999999999999999999999999999999874 99999998
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------CccccCccCCCCCHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCA-------DTVIGNWHLRGISGGEKK 187 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGGerq 187 (697)
.++||+|++.+++. ||+||+. .. . .... .+++.++.+++.+.. ++.++. .+..|||||||
T Consensus 100 ~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~Q 166 (290)
T 2bbs_A 100 RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRA 166 (290)
T ss_dssp CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHH
T ss_pred EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHH
Confidence 38999999988885 9999998 32 1 1111 233344555554322 233332 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL-RNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 188 RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L-~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
||+|||+|+.+|++|+|||||+|||+.++..+++.+ ++++ +|+|||+++|++ ..+ ..||++++|++|++++.|+++
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~ 243 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFS 243 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999974 5554 489999999997 344 569999999999999999988
Q ss_pred hHH
Q 046969 267 LAV 269 (697)
Q Consensus 267 ~~~ 269 (697)
+..
T Consensus 244 ~l~ 246 (290)
T 2bbs_A 244 ELQ 246 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.5e-39 Score=399.39 Aligned_cols=217 Identities=29% Similarity=0.473 Sum_probs=186.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.|+. + ++.++|+|+|++|+|||.+||+||||||||||+++|.|+++|. +|+|.+||.+++.
T Consensus 1076 ~I~f~nVsf~Y~~---~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE---R-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CEEEEEEEECCTT---S-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCH
T ss_pred eEEEEEEEEeCCC---C-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCH
Confidence 5999999998863 1 3567999999999999999999999999999999999999985 9999999999752
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCCcccCccccCccCCCCC
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL-------GLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LS 182 (697)
.++.++|||||+.+|+. |++|||.|+.. |...++++.. +.++.. .|.+..||.||+ ....||
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~ei~----~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LS 1219 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVE----EAARLANIHNFIAELPEGFETRVGD-RGTQLS 1219 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHHHH----HHHHHTTCHHHHHTSTTTTCSEETT-TSCSSC
T ss_pred HHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHHHH----HHHHHhCChHHHHcCcCCCCCEecC-CCcccC
Confidence 25789999999999987 99999987632 2345555543 344443 356678999986 446799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++ ....||+|++|++|+++++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998864 4899999999986 3567999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|++++.++
T Consensus 1297 Gth~eLl~ 1304 (1321)
T 4f4c_A 1297 GTHTQLMS 1304 (1321)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99998764
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.2e-38 Score=389.39 Aligned_cols=215 Identities=28% Similarity=0.435 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++|+++.++. .+++++|+|+|+++++||.+||+||||||||||+++|.|.+++. +|+|.+||.+++..
T Consensus 415 ~I~~~nvsF~Y~~----~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 415 DITVENVHFTYPS----RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINL 487 (1321)
T ss_dssp CEEEEEEEECCSS----STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCH
T ss_pred cEEEEEeeeeCCC----CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccH
Confidence 5999999998863 14578999999999999999999999999999999999999985 99999999997532
Q ss_pred ---CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCCcccCccccCccCCCCC
Q 046969 113 ---SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL-------GLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 113 ---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LS 182 (697)
++.+|||+|++.+|.. |++|||.|+.. ..++++.. ++++.. .|.+..||.||+. ...||
T Consensus 488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~~v~----~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LS 556 (1321)
T 4f4c_A 488 EFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITREEMV----AACKMANAEKFIKTLPNGYNTLVGDR-GTQLS 556 (1321)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHHHHH----HHHHHTTCHHHHHHSTTTTSSEESSS-SCCCC
T ss_pred HHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchHHHHH----HHHHHccchhHHHcCCCCCccEecCC-CCCCC
Confidence 4679999999999987 99999998631 23444433 333333 3567789999974 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
||||||++||||+++||+||+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeecc
Confidence 9999999999999999999999999999999999999999999764 899999999986 4688999999999999999
Q ss_pred cChhhHHH
Q 046969 263 GEAKLAVE 270 (697)
Q Consensus 263 G~~~~~~~ 270 (697)
|+.++..+
T Consensus 634 Gth~eL~~ 641 (1321)
T 4f4c_A 634 GDHRALMA 641 (1321)
T ss_dssp ECHHHHHT
T ss_pred CCHHHHHH
Confidence 99987653
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-36 Score=377.08 Aligned_cols=217 Identities=30% Similarity=0.455 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-- 112 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-- 112 (697)
.++++|+++.++. + +.+++|+|+|+++++||++||+||||||||||+++|+|.+++. +|+|.+||+++...
T Consensus 387 ~i~~~~v~~~y~~---~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS---R-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CEEEEEEEECCSS---T-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEEcCC---C-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCH
Confidence 5999999998753 1 2457999999999999999999999999999999999999885 99999999986421
Q ss_pred ---CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH-----HHHHHcCCCcccCccccCccCCCCCHH
Q 046969 113 ---SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVD-----GTILELGLHDCADTVIGNWHLRGISGG 184 (697)
Q Consensus 113 ---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~d~~vg~~~~~~LSGG 184 (697)
++.+|||+|++.+++. ||+|||.++.. ..++++..+.++ +.++ .+.+..||.+|+ ...+||||
T Consensus 460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~-~g~~LSgG 530 (1284)
T 3g5u_A 460 RYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGE-RGAQLSGG 530 (1284)
T ss_dssp HHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSS-SSCSSCHH
T ss_pred HHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccccccC-CCCccCHH
Confidence 3569999999999987 99999998742 233444333222 2222 345567888875 45689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||++|||||+.+|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++ .+ ..||+|++|++|++++.|+
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~ 607 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGN 607 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998865 5899999999974 45 5599999999999999999
Q ss_pred hhhHHH
Q 046969 265 AKLAVE 270 (697)
Q Consensus 265 ~~~~~~ 270 (697)
.++..+
T Consensus 608 ~~~l~~ 613 (1284)
T 3g5u_A 608 HDELMR 613 (1284)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-36 Score=377.97 Aligned_cols=221 Identities=29% Similarity=0.450 Sum_probs=181.8
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV--- 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--- 111 (697)
.++++||++.++. + +.+++|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||++++.
T Consensus 1030 ~i~~~~v~~~y~~---~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPT---R-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CEEEEEEEBCCSC---G-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCH
T ss_pred cEEEEEEEEECCC---C-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCH
Confidence 5999999998753 1 2457999999999999999999999999999999999999885 9999999998642
Q ss_pred --CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHH--cCCCcccCccccCccCCCCCHHHH
Q 046969 112 --DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-ILE--LGLHDCADTVIGNWHLRGISGGEK 186 (697)
Q Consensus 112 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSGGer 186 (697)
.++.++||+|++.+++ .||+|||.++... ...++++..+..+.. +++ -.+.+..||.+|+ ....||||||
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQK 1177 (1284)
T ss_dssp HHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHH
T ss_pred HHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHHHHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHH
Confidence 2567999999998886 5999999875321 123444443322221 111 2355677888885 4568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 187 KRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 187 qRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
|||+|||+|+.+|+||+|||||+|||+.+...+.+.|+++ .+|+|||+++|+++ .+ ..||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999885 45899999999986 45 569999999999999999998
Q ss_pred hHHH
Q 046969 267 LAVE 270 (697)
Q Consensus 267 ~~~~ 270 (697)
+..+
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.5e-36 Score=342.94 Aligned_cols=206 Identities=25% Similarity=0.293 Sum_probs=177.2
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++++|+++.+. + ..|+++|+.+++||+++|+|||||||||||++|+|++++. +|+|.++
T Consensus 355 ~~~l~~~~l~~~~~-------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD------- 416 (607)
T ss_dssp CEEEEECCEEEECS-------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC-------
T ss_pred ceEEEEeceEEEec-------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe-------
Confidence 35799999998763 1 3689999999999999999999999999999999999884 8998762
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
..++|++|+..+.+.+||.|++....... ....++++++++.+||.+.+++.++ .|||||||||+||
T Consensus 417 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iA 483 (607)
T 3bk7_A 417 -LTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIA 483 (607)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHH
T ss_pred -eEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHH
Confidence 45999999988878899999887641110 0113567889999999988888764 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecC--CeeeeecChhhHH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKLAV 269 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~--G~iv~~G~~~~~~ 269 (697)
++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++||+ .++..+|||+++|++ |+++..|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999975 699999999996 578899999999986 8888899998765
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
+
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 4
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-35 Score=338.82 Aligned_cols=206 Identities=25% Similarity=0.301 Sum_probs=176.2
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++++|+++.+. ...|+++|+++++||++||+|||||||||||++|+|++++. +|+|.++
T Consensus 285 ~~~l~~~~l~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG--------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD------- 346 (538)
T ss_dssp CEEEEECCEEEEET--------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC-------
T ss_pred CeEEEEeeEEEEEC--------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC-------
Confidence 45799999998763 13689999999999999999999999999999999999874 8998761
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
..++||+|+....+.+||.|++........ . ..+.++++++.+|+.+.+++.++ .|||||||||+||
T Consensus 347 -~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lA 413 (538)
T 1yqt_A 347 -LTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIA 413 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHH
T ss_pred -ceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHH
Confidence 359999999887788999998875411110 0 12457788999999888888764 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecC--CeeeeecChhhHH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKLAV 269 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~--G~iv~~G~~~~~~ 269 (697)
++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++||+ .++..+|||+++|++ |+++..|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999975 599999999996 678899999999985 7888899998765
Q ss_pred H
Q 046969 270 E 270 (697)
Q Consensus 270 ~ 270 (697)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 4
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-35 Score=334.08 Aligned_cols=206 Identities=24% Similarity=0.325 Sum_probs=173.2
Q ss_pred cceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 046969 33 GTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD 112 (697)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 112 (697)
...++++|+++.+. ...|+++|+++++||+++|+|||||||||||++|+|++++. +|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~--------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~------ 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG--------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK------ 329 (538)
T ss_dssp CEEEEECCEEEEET--------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC------
T ss_pred cceEEEcceEEEEC--------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC------
Confidence 45789999998763 13578889999999999999999999999999999999885 89998765
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH
Q 046969 113 SGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 113 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
..++|++|+......+||+|++.+...... .. ....++++++.+||.+.+++.++ .|||||||||+||
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iA 397 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIA 397 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHH
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHH
Confidence 358999999777778899999987432111 01 12356788899999988888764 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecC--CeeeeecChhhH
Q 046969 193 LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKLA 268 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~--G~iv~~G~~~~~ 268 (697)
++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++||+ .++..+||||++|++ |.....+++.+.
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999999999999999986 589999999997 588899999999986 555566665543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-34 Score=326.36 Aligned_cols=192 Identities=23% Similarity=0.300 Sum_probs=162.7
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCC
Q 046969 55 KRLLQGLYGYAEPG-----RIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTL 129 (697)
Q Consensus 55 ~~iL~~vs~~i~~G-----ei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~l 129 (697)
+.+++++|+.+++| |+++|+|||||||||||++|+|+++++ +|+. . ....++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCcEEEecccccccCCc
Confidence 45789999999988 789999999999999999999999885 7752 1 134699999997766667
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046969 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS 209 (697)
Q Consensus 130 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts 209 (697)
||+|++.... + ..... .+.++++++.++|.+.+|+.+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~~--~--~~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--R--GQFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--S--STTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--h--ccccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875432 1 11111 235678899999999888876 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecC--CeeeeecChhhHHH
Q 046969 210 GLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKLAVE 270 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~--G~iv~~G~~~~~~~ 270 (697)
|||+.++..+++.|+++++ .|.|||+++||+ .++..+|||+++|++ |+++..|+++++..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999875 599999999996 688899999999986 89999999987654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.6e-33 Score=330.72 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=167.0
Q ss_pred ccceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 046969 32 RGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 111 (697)
.+..+...|+++.+. .+.+|+|+|+.+++||+++|+||||||||||||+|+| |+| +|.+...
T Consensus 432 ~~~~L~~~~ls~~yg-------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~ 493 (986)
T 2iw3_A 432 EGEDLCNCEFSLAYG-------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE 493 (986)
T ss_dssp SSCEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT
T ss_pred ccceeEEeeEEEEEC-------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc
Confidence 345677789998873 4679999999999999999999999999999999995 222 3433211
Q ss_pred CCCeEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCccCCCCCHHHHHHH
Q 046969 112 DSGVLAYVTQEN-VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 112 ~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv 189 (697)
...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++.++ .|||||||||
T Consensus 494 -~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRv 557 (986)
T 2iw3_A 494 -ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKL 557 (986)
T ss_dssp -TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHH
T ss_pred -ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHH
Confidence 12378999884 67889999999976 111 11 45688899999995 66777664 7999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee-eecChhhH
Q 046969 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKLA 268 (697)
Q Consensus 190 sIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv-~~G~~~~~ 268 (697)
+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++ .++.++||++++|++|+++ +.|+.++.
T Consensus 558 aLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 999999999999999999999999999999999998 589999999996 6788999999999999997 78998765
Q ss_pred HH
Q 046969 269 VE 270 (697)
Q Consensus 269 ~~ 270 (697)
..
T Consensus 634 ~~ 635 (986)
T 2iw3_A 634 VK 635 (986)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=9.6e-34 Score=331.40 Aligned_cols=208 Identities=26% Similarity=0.352 Sum_probs=141.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC----CceeEEEECCEe
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLL---------------------DSLAGRLSRHV----IMTGNVLFNGKK 108 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL---------------------~~LaG~~~~~~----~~~G~I~~nG~~ 108 (697)
.+.+|+|||+++++||+++|+||||||||||| ++++|+..++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 78888776641 124677777765
Q ss_pred cCc-CCCeEEEEecCCC-------------------CCCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHHHHHHH
Q 046969 109 TRV-DSGVLAYVTQENV-------------------LLGTLTVRETITYSAHLRLPSSMS------KEDIKSHVDGTILE 162 (697)
Q Consensus 109 ~~~-~~~~i~yv~Q~~~-------------------l~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~ 162 (697)
... .+..+++|+|... .++.+||.||+.+...+....... .++..+++ ++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHH-HHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH-HHHHH
Confidence 421 2234555555432 246789999998854332111000 00111222 35888
Q ss_pred cCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 046969 163 LGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTKPQ--LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQ 239 (697)
Q Consensus 163 lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~--lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hq 239 (697)
+||.+. +|+.++ .|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 577664 799999999999999999998 999999999999999999999999999889999999999
Q ss_pred CcHHHHHhccceeee------cCCeeeeecChhhHH
Q 046969 240 PSSEVFALFDDLFLL------SGGETVYFGEAKLAV 269 (697)
Q Consensus 240 p~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~ 269 (697)
+. . ...||++++| ++|++++.|+++++.
T Consensus 264 ~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 73 4 5579999999 899999999988754
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.9e-34 Score=330.63 Aligned_cols=181 Identities=29% Similarity=0.391 Sum_probs=151.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEecCc-------CCCeEEEE
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV---------LFNGKKTRV-------DSGVLAYV 119 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~nG~~~~~-------~~~~i~yv 119 (697)
.+|+++| .+++||+++|+||||||||||||+|+|.++|+ +|++ .++|.+... ....++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 4899999 99999999999999999999999999999875 6775 456654311 12357899
Q ss_pred ecCCCCCC---CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh
Q 046969 120 TQENVLLG---TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL 196 (697)
Q Consensus 120 ~Q~~~l~~---~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll 196 (697)
+|+....+ ..||.|++... .. .++++++++.+||.+.+|+.++ .|||||||||+||+||+
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALL 244 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHH
T ss_pred echhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHh
Confidence 88743322 23999998641 00 1346788999999998888774 79999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 197 TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 197 ~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ ..+..++|++++|.++.
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999988899999999996 57888999999998653
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-34 Score=326.27 Aligned_cols=195 Identities=25% Similarity=0.321 Sum_probs=157.3
Q ss_pred EEE-EEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EEC
Q 046969 36 LVW-ENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV---------LFN 105 (697)
Q Consensus 36 l~~-~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~n 105 (697)
.+. +||++.+. ....+|+++| .+++||+++|+||||||||||||+|+|.++|+ +|++ .++
T Consensus 21 ~~~~~~ls~~yg------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRYG------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFR 90 (538)
T ss_dssp ---CCCEEEECS------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTT
T ss_pred hhHhcCcEEEEC------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhC
Confidence 344 46777652 1225899999 99999999999999999999999999999875 6775 356
Q ss_pred CEecC-------cCCCeEEEEecCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccC
Q 046969 106 GKKTR-------VDSGVLAYVTQENVLLGT---LTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN 175 (697)
Q Consensus 106 G~~~~-------~~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~ 175 (697)
|.+.. .....+++++|+..+++. .||.|++.... ..++++++++.+||.+..++.++
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~- 157 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ- 157 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-
Confidence 65431 112357899987544332 38999885311 11347788999999988888764
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 176 WHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 176 ~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
.|||||||||+||++|+.+|++|||||||++||+.++..+++.|++++++|.|||+++|+. .++.++||++++|.
T Consensus 158 ----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 158 ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVY 232 (538)
T ss_dssp ----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEc
Confidence 7999999999999999999999999999999999999999999999988899999999996 57889999999998
Q ss_pred CCe
Q 046969 256 GGE 258 (697)
Q Consensus 256 ~G~ 258 (697)
+|.
T Consensus 233 ~~~ 235 (538)
T 1yqt_A 233 GEP 235 (538)
T ss_dssp EET
T ss_pred Ccc
Confidence 654
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.8e-33 Score=331.35 Aligned_cols=208 Identities=25% Similarity=0.364 Sum_probs=164.3
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCC
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS 113 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~ 113 (697)
..|+++||++.++. ..+++|+|+|+++++||+++|+||||||||||||+|+|.+++. +|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g-----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------ 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG-----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------ 735 (986)
T ss_dssp EEEEEEEEEECCTT-----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------
T ss_pred ceEEEEeeEEEeCC-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------
Confidence 46999999987631 1367999999999999999999999999999999999999885 999999863
Q ss_pred CeEEEEecCCCC----CCCCCHHHHHHHHhhcc------------C-C--------------------------------
Q 046969 114 GVLAYVTQENVL----LGTLTVRETITYSAHLR------------L-P-------------------------------- 144 (697)
Q Consensus 114 ~~i~yv~Q~~~l----~~~lTV~E~l~~~~~l~------------~-~-------------------------------- 144 (697)
..++|++|+... ....|++|++.+..... + +
T Consensus 736 ~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~ 815 (986)
T 2iw3_A 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815 (986)
T ss_dssp CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEE
T ss_pred cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccc
Confidence 248999997531 23468888876532100 0 0
Q ss_pred -------------------CCCC----------------------------------HHHHHHHHHHHHHHcCCCc-c-c
Q 046969 145 -------------------SSMS----------------------------------KEDIKSHVDGTILELGLHD-C-A 169 (697)
Q Consensus 145 -------------------~~~~----------------------------------~~~~~~~v~~~l~~lgL~~-~-~ 169 (697)
..++ ....+++++++++.+||.+ . .
T Consensus 816 ~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~ 895 (986)
T 2iw3_A 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVS 895 (986)
T ss_dssp EEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHH
T ss_pred hhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhc
Confidence 0000 0001346788999999975 3 4
Q ss_pred CccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcc
Q 046969 170 DTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFD 249 (697)
Q Consensus 170 d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D 249 (697)
++.+ ++|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++ |.|||+++|++ +++.++||
T Consensus 896 ~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~D 966 (986)
T 2iw3_A 896 HSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTE 966 (986)
T ss_dssp HSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCC
T ss_pred CCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCC
Confidence 6655 479999999999999999999999999999999999999999888765 67999999996 57788999
Q ss_pred ceeeecCCeeeeecC
Q 046969 250 DLFLLSGGETVYFGE 264 (697)
Q Consensus 250 ~v~lL~~G~iv~~G~ 264 (697)
++++|.+|+++..|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999998775
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=4e-32 Score=317.74 Aligned_cols=195 Identities=24% Similarity=0.321 Sum_probs=148.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEecCc
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA----------------------GRLSRHVIMTGNVLFNGKKTRV 111 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La----------------------G~~~~~~~~~G~I~~nG~~~~~ 111 (697)
.+.+|+|||++|++||++||+||||||||||+++|. |... ..|.|.++|.+...
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~----~~~~i~~~~~~~~~ 409 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH----LDKVIDIDQSPIGR 409 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG----CSEEEECCSSCSCS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc----cCceeEeccccCCC
Confidence 356899999999999999999999999999998764 2221 24678888765421
Q ss_pred CC----------------------------------------------CeEEEEecCCCCCC------------------
Q 046969 112 DS----------------------------------------------GVLAYVTQENVLLG------------------ 127 (697)
Q Consensus 112 ~~----------------------------------------------~~i~yv~Q~~~l~~------------------ 127 (697)
.. ...|++.|+..+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (670)
T 3ux8_A 410 TPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRET 489 (670)
T ss_dssp STTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHH
T ss_pred CCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhh
Confidence 00 01244444433322
Q ss_pred --------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHHH
Q 046969 128 --------------TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSIA 192 (697)
Q Consensus 128 --------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa 192 (697)
.+||.||+.+.... . ..+++.+.++.+||.. .+++.+ ..|||||||||+||
T Consensus 490 ~~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 490 LEVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLA 555 (670)
T ss_dssp HTCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHH
T ss_pred hheeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHH
Confidence 47999999885421 1 1234567788899864 345554 57999999999999
Q ss_pred HHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeec
Q 046969 193 LEILTKP---QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFG 263 (697)
Q Consensus 193 ~~Ll~~P---~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G 263 (697)
|||+.+| ++|||||||+|||+.++..+++.|++++++|+|||+++|++. . .+.||+|++| ++|++++.|
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEE
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEec
Confidence 9999887 599999999999999999999999999988999999999974 4 4779999999 899999999
Q ss_pred ChhhH
Q 046969 264 EAKLA 268 (697)
Q Consensus 264 ~~~~~ 268 (697)
+++++
T Consensus 634 ~~~~~ 638 (670)
T 3ux8_A 634 TPEEV 638 (670)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99875
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.9e-31 Score=302.68 Aligned_cols=207 Identities=25% Similarity=0.275 Sum_probs=154.3
Q ss_pred eEEEEEEEEEecc---ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------
Q 046969 35 FLVWENLFAVLPN---FGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV--------- 102 (697)
Q Consensus 35 ~l~~~~l~~~~~~---~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I--------- 102 (697)
.+++.||...+.. ..++ .....|++++ .+++||++||+||||||||||||+|+|+++|+ +|+|
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~-~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~ 143 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYS-ANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEI 143 (608)
T ss_dssp CEEEEEESSSSSTTEEEECS-TTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHH
T ss_pred ceEEecCChhhcCCeEEEEC-CCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhh
Confidence 4677776543311 0122 2334677777 68999999999999999999999999999885 7887
Q ss_pred --EECCEecCc-----CCC--eEEEEecCCCC------CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 046969 103 --LFNGKKTRV-----DSG--VLAYVTQENVL------LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD 167 (697)
Q Consensus 103 --~~nG~~~~~-----~~~--~i~yv~Q~~~l------~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 167 (697)
.+.|..... ..+ ...+.+|.... -+..++.+++.... .. ..++++++++.+||.+
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~ 213 (608)
T 3j16_B 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLEN 213 (608)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTG
T ss_pred hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcc
Confidence 233432210 001 12233443211 12235666654321 11 1346788999999999
Q ss_pred ccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHh
Q 046969 168 CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFAL 247 (697)
Q Consensus 168 ~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l 247 (697)
..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++..+
T Consensus 214 ~~~~~~~-----~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~ 287 (608)
T 3j16_B 214 VLKRDIE-----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYL 287 (608)
T ss_dssp GGGSCTT-----TCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHH
T ss_pred hhCCChH-----HCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHh
Confidence 8888774 7999999999999999999999999999999999999999999999988899999999997 688999
Q ss_pred ccceeeecCCeeeee
Q 046969 248 FDDLFLLSGGETVYF 262 (697)
Q Consensus 248 ~D~v~lL~~G~iv~~ 262 (697)
+|++++|.+|..+|.
T Consensus 288 ~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 288 SDFVCIIYGVPSVYG 302 (608)
T ss_dssp CSEEEEEESCTTTEE
T ss_pred CCEEEEEeCCccccc
Confidence 999999998776653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.4e-31 Score=298.45 Aligned_cols=174 Identities=25% Similarity=0.336 Sum_probs=140.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEecCc-------CCCeEEEEecCC---
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV-----------LFNGKKTRV-------DSGVLAYVTQEN--- 123 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I-----------~~nG~~~~~-------~~~~i~yv~Q~~--- 123 (697)
.++||++||+||||||||||||+|+|.++|+ +|+| .++|+++.. ....+..+.|..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4699999999999999999999999999885 7888 567765421 112244444432
Q ss_pred -CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 046969 124 -VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLL 202 (697)
Q Consensus 124 -~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~ll 202 (697)
.++. .||+|++.... .+++++++++.+|+.+..|+.++ .|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEE
Confidence 2332 38888664211 11346778899999998888774 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeee
Q 046969 203 FLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 203 lLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
+|||||++||+.++..+.+.|+++++ |+|||+++|++ .++..+||+|++|.+|..+|
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 99999999999999999999999976 99999999997 68899999999998765443
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=9.3e-29 Score=294.27 Aligned_cols=199 Identities=23% Similarity=0.293 Sum_probs=152.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEecCc-----
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLL---------DSLAGRLSRHV---IMT------GNVLFNGKKTRV----- 111 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL---------~~LaG~~~~~~---~~~------G~I~~nG~~~~~----- 111 (697)
+..|+|||+.+++|++++|+||||||||||+ +.+.+...... ..+ +.+.+++.++..
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44444322110 112 335555443210
Q ss_pred -----------------------------------------CCCeEEEEecCCCCCCC----------------------
Q 046969 112 -----------------------------------------DSGVLAYVTQENVLLGT---------------------- 128 (697)
Q Consensus 112 -----------------------------------------~~~~i~yv~Q~~~l~~~---------------------- 128 (697)
..+..|++.|+..+++.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 00225788887766653
Q ss_pred ----------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhh
Q 046969 129 ----------LTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILT 197 (697)
Q Consensus 129 ----------lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~ 197 (697)
+||.|++.|.... ....++.++++.+||... .+. .+..|||||||||+||++|+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhh
Confidence 6888888875421 123456788999999642 233 345899999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhH
Q 046969 198 KP---QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLA 268 (697)
Q Consensus 198 ~P---~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~ 268 (697)
+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +. ...||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 79999999999999999999999999998899999999997 34 4669999999 89999999999876
Q ss_pred H
Q 046969 269 V 269 (697)
Q Consensus 269 ~ 269 (697)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=3.2e-29 Score=296.01 Aligned_cols=207 Identities=28% Similarity=0.309 Sum_probs=156.9
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--C--------
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDS-LAGRLS-------R--H-------- 95 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~-LaG~~~-------~--~-------- 95 (697)
..|+++|+++ ..|+|||+.|++||++||+|+||||||||+++ |+|.+. + +
T Consensus 501 ~~L~v~~l~~------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 501 GWLELNGVTR------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp CEEEEEEEEE------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred ceEEEEeeee------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 4588888763 25999999999999999999999999999996 765431 1 0
Q ss_pred -----CCcee-------EEEECCEecCcC-CC---------------------------------------------eEE
Q 046969 96 -----VIMTG-------NVLFNGKKTRVD-SG---------------------------------------------VLA 117 (697)
Q Consensus 96 -----~~~~G-------~I~~nG~~~~~~-~~---------------------------------------------~i~ 117 (697)
...+| .|.++|+++... +. ..|
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 01366 789998765311 00 112
Q ss_pred EEecCCCCCC--------------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 046969 118 YVTQENVLLG--------------------------------TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGL 165 (697)
Q Consensus 118 yv~Q~~~l~~--------------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 165 (697)
++..+..+++ .+|+.|++.|... . . ..+++.++++.+||
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL 719 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E-S--AIFRALDTLREVGL 719 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S-H--HHHHHHHHHHHTTC
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCC
Confidence 2222222222 2455665554221 1 1 23467889999999
Q ss_pred Ccc-cCccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 166 HDC-ADTVIGNWHLRGISGGEKKRLSIALEILTK---PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 166 ~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~---P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
... .++.+ ..|||||||||+||++|+.+ |++|+|||||+|||..+...+++.|++++++|.|||+++|++
T Consensus 720 ~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl- 793 (842)
T 2vf7_A 720 GYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM- 793 (842)
T ss_dssp TTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-
T ss_pred CcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-
Confidence 863 45544 57999999999999999996 799999999999999999999999999998999999999996
Q ss_pred HHHHHhccceeee------cCCeeeeecChhhH
Q 046969 242 SEVFALFDDLFLL------SGGETVYFGEAKLA 268 (697)
Q Consensus 242 ~~i~~l~D~v~lL------~~G~iv~~G~~~~~ 268 (697)
+++ +.||+|++| ++|++++.|+++++
T Consensus 794 ~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 794 QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 456 889999999 79999999998864
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=5.7e-29 Score=294.24 Aligned_cols=208 Identities=24% Similarity=0.320 Sum_probs=158.2
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA-GRL---------SRHV--IMTG- 100 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La-G~~---------~~~~--~~~G- 100 (697)
..|+++|++ ...|+|||+.|++||+++|+|+||||||||+++|. |.+ .++. ...|
T Consensus 628 ~~L~v~~l~------------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~ 695 (972)
T 2r6f_A 628 RWLEVVGAR------------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL 695 (972)
T ss_dssp CEEEEEEEC------------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECG
T ss_pred eEEEEecCc------------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccc
Confidence 357777764 13699999999999999999999999999999853 211 1211 1234
Q ss_pred -----EEEECCEecCcC------------------------CCeEEEEecCCCC----------------------CC--
Q 046969 101 -----NVLFNGKKTRVD------------------------SGVLAYVTQENVL----------------------LG-- 127 (697)
Q Consensus 101 -----~I~~nG~~~~~~------------------------~~~i~yv~Q~~~l----------------------~~-- 127 (697)
.|.++|.++... .+..||++|...+ .+
T Consensus 696 ~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v 775 (972)
T 2r6f_A 696 EHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDV 775 (972)
T ss_dssp GGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCE
T ss_pred cccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccc
Confidence 588888765210 0124666664221 11
Q ss_pred ------------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCc
Q 046969 128 ------------------------------TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNW 176 (697)
Q Consensus 128 ------------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~ 176 (697)
.+||.|++.|.... .+ .+++.++++.+||.. ..++.+
T Consensus 776 ~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~~gL~~~~l~~~~--- 843 (972)
T 2r6f_A 776 YVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-------PK--IKRKLETLYDVGLGYMKLGQPA--- 843 (972)
T ss_dssp EEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-------HH--HHHHHHHHHHTTCSSSBTTCCG---
T ss_pred cccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-------hh--HHHHHHHHHHcCCCcccccCch---
Confidence 46888888774321 11 234567899999987 566655
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee
Q 046969 177 HLRGISGGEKKRLSIALEILTKP---QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P---~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ .+ .+.||++++
T Consensus 844 --~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~-i~~aDrIiv 919 (972)
T 2r6f_A 844 --TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIID 919 (972)
T ss_dssp --GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEE
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH-HHhCCEEEE
Confidence 479999999999999999765 99999999999999999999999999998999999999996 34 478999999
Q ss_pred e------cCCeeeeecChhhHH
Q 046969 254 L------SGGETVYFGEAKLAV 269 (697)
Q Consensus 254 L------~~G~iv~~G~~~~~~ 269 (697)
| ++|++++.|+++++.
T Consensus 920 L~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 920 LGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp ECSSSTTSCCSEEEEESHHHHH
T ss_pred EcCCCCCCCCEEEEecCHHHHH
Confidence 9 789999999988653
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.3e-28 Score=292.33 Aligned_cols=208 Identities=24% Similarity=0.307 Sum_probs=155.0
Q ss_pred ceEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC-----CCC--Ccee-
Q 046969 34 TFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA-G----RLS-----RHV--IMTG- 100 (697)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La-G----~~~-----~~~--~~~G- 100 (697)
..|+++|++ ...|+|||+.|++||++||+|+||||||||+++|. | .+. ++. ...|
T Consensus 646 ~~L~v~~l~------------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~ 713 (993)
T 2ygr_A 646 RQLTVVGAR------------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGL 713 (993)
T ss_dssp SEEEEEEEC------------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCC
T ss_pred ceEEEecCc------------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCc
Confidence 357777764 12699999999999999999999999999999853 2 221 110 0112
Q ss_pred -----EEEECCEecCcC------------------------CCeEEEEecCCCC----------------------CC--
Q 046969 101 -----NVLFNGKKTRVD------------------------SGVLAYVTQENVL----------------------LG-- 127 (697)
Q Consensus 101 -----~I~~nG~~~~~~------------------------~~~i~yv~Q~~~l----------------------~~-- 127 (697)
.|.+++.++... .+..||++|...+ ++
T Consensus 714 ~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v 793 (993)
T 2ygr_A 714 DYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDV 793 (993)
T ss_dssp TTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCE
T ss_pred cccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccc
Confidence 355665553100 0123555553221 11
Q ss_pred ------------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCc
Q 046969 128 ------------------------------TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNW 176 (697)
Q Consensus 128 ------------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~ 176 (697)
.+||.|++.|.... .+ .+++.++++.+||.. ..++.+
T Consensus 794 ~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~~~--- 861 (993)
T 2ygr_A 794 YVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQPA--- 861 (993)
T ss_dssp EEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTCCG---
T ss_pred eeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccCcc---
Confidence 36788888764321 11 234567899999976 556655
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee
Q 046969 177 HLRGISGGEKKRLSIALEILTKP---QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P---~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++. ++ +.||++++
T Consensus 862 --~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIiv 937 (993)
T 2ygr_A 862 --PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIID 937 (993)
T ss_dssp --GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEE
T ss_pred --ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEE
Confidence 479999999999999999865 999999999999999999999999999988999999999963 44 78999999
Q ss_pred e------cCCeeeeecChhhHH
Q 046969 254 L------SGGETVYFGEAKLAV 269 (697)
Q Consensus 254 L------~~G~iv~~G~~~~~~ 269 (697)
| ++|++++.|+++++.
T Consensus 938 L~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 938 LGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp EESSSTTSCSEEEEEECHHHHH
T ss_pred ECCCcCCCCCEEEEecCHHHHH
Confidence 9 789999999998654
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.2e-27 Score=263.74 Aligned_cols=204 Identities=24% Similarity=0.262 Sum_probs=147.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRH-----------------------------------VIMT 99 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 99 (697)
..+++++++.+.+| +++|+|||||||||||++|.++.... ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 99999999999999999997766420 0126
Q ss_pred eEEEECCEecCc------CCCeEEEEecCCCCCCCCCHHHHHHHHhhcc-----------------------CCCCCC--
Q 046969 100 GNVLFNGKKTRV------DSGVLAYVTQENVLLGTLTVRETITYSAHLR-----------------------LPSSMS-- 148 (697)
Q Consensus 100 G~I~~nG~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~-----------------------~~~~~~-- 148 (697)
|++.+||++... ....+++++|++.++.. +..+...|.-... +.....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998642 12348999999876543 5555544422110 000000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------Cc---cccC--
Q 046969 149 --------------------------------KEDIKSHVDGTILELGLHDCA----------------DT---VIGN-- 175 (697)
Q Consensus 149 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------d~---~vg~-- 175 (697)
.+...+.+++.++.+++.+.. ++ .++.
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 011123455556666664310 00 1110
Q ss_pred ----ccCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhc
Q 046969 176 ----WHLRG-ISGGEKKRLSIALEILTKP--QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALF 248 (697)
Q Consensus 176 ----~~~~~-LSGGerqRvsIa~~Ll~~P--~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~ 248 (697)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|.|||++||+| ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999998 689999999997 456899
Q ss_pred cceeee----cCCeeeeec
Q 046969 249 DDLFLL----SGGETVYFG 263 (697)
Q Consensus 249 D~v~lL----~~G~iv~~G 263 (697)
|++++| .+|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 899987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-30 Score=289.10 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=147.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEecCcCCCeEEEEecCCC---CCCCCCHHH
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG-N-VLFNGKKTRVDSGVLAYVTQENV---LLGTLTVRE 133 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~-I~~nG~~~~~~~~~i~yv~Q~~~---l~~~lTV~E 133 (697)
.++|+.+++|++++|+||||||||||+|+|+|+.++ .+| + |.+||.. ++.++||+|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 478899999999999999999999999999999876 489 8 9999832 456899999984 455689999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE--ILTKPQL----LFLDE- 206 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~--Ll~~P~l----llLDE- 206 (697)
|+ |....... .. ..+++.++++.+||.+..+ +.+|||||||||+||++ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccC--cc---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 65432111 00 0123455677788877665 25799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc--H---HHHHhccc-----eeeec-CCeeeeecChhhH
Q 046969 207 PSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS--S---EVFALFDD-----LFLLS-GGETVYFGEAKLA 268 (697)
Q Consensus 207 PtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~--~---~i~~l~D~-----v~lL~-~G~iv~~G~~~~~ 268 (697)
||+|||+. ...+.+.+++ .|+|+|+++|+.. - ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 4444444444 3789999999975 1 56689999 99999 99999 8987654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=8.9e-25 Score=237.60 Aligned_cols=83 Identities=28% Similarity=0.454 Sum_probs=76.7
Q ss_pred cCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccc
Q 046969 177 HLRGISGGEKKRLSIALEIL------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
.+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|++++++|+|||+++|++. ..+.+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCE
Confidence 45689999999999999999 699999999999999999999999999999888999999999973 4788999
Q ss_pred eeeecCCeeee
Q 046969 251 LFLLSGGETVY 261 (697)
Q Consensus 251 v~lL~~G~iv~ 261 (697)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999875
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=5.5e-28 Score=242.78 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=100.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EecCcCCCeEEEEecCCCCCCCCC
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG--KKTRVDSGVLAYVTQENVLLGTLT 130 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG--~~~~~~~~~i~yv~Q~~~l~~~lT 130 (697)
+++.+|+|+ ++||+++|+|||||||||||++|+|+ +++ +|+|.... .+....++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 356799996 89999999999999999999999999 763 77773211 11112245799999976
Q ss_pred HHHHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 046969 131 VRETI-TYSA----HLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLD 205 (697)
Q Consensus 131 V~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLD 205 (697)
+||+ .+.. .+. .... .+.++++++. |+ ||||||+||++|+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEe
Confidence 4554 2211 111 0011 1234444443 22 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 206 EPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 206 EPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
|||+| ++..+++.|+++ ++|+||| ++|++.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 899999999998 6689999 999973
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=6.9e-24 Score=226.67 Aligned_cols=87 Identities=26% Similarity=0.251 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccce--
Q 046969 178 LRGISGGEKKRLSIALEIL----TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDL-- 251 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll----~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v-- 251 (697)
+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|++++ +|.|||+++|++ ++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEE
Confidence 4589999999999999997 5789999999999999999999999999985 489999999996 467899987
Q ss_pred eeecCCee-eeecChhh
Q 046969 252 FLLSGGET-VYFGEAKL 267 (697)
Q Consensus 252 ~lL~~G~i-v~~G~~~~ 267 (697)
++|.+|+. +.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 77877754 44444444
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=7.7e-25 Score=212.76 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=100.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCC-CCCCCHHHHHHHH
Q 046969 60 GLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVL-LGTLTVRETITYS 138 (697)
Q Consensus 60 ~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~ 138 (697)
|||+.+++||+++|+||||||||||++++.+- ...+++.. ..++++|+..- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~---------~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP---------TEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG---------GGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC---------CeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 68999999999999999999999999986531 11111111 12456665321 00001111111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 046969 139 AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA---- 214 (697)
Q Consensus 139 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~---- 214 (697)
.... .....|.....|.. ...|||||||++||++++.+|++|+|||||+|||+.
T Consensus 64 ---------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 12234554444432 246999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 215 ------------SAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 215 ------------~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
....+.+.|++++++|.|+|+++|++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 66889999999987899999999997
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=2.3e-26 Score=252.84 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=142.4
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 55 KRLLQGLYGYAEPGR--------------------IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 55 ~~iL~~vs~~i~~Ge--------------------i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc--e-
Confidence 568999999999999 99999999999999999999999874 899999987653 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH--HHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG--EKKRLSIA 192 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG--erqRvsIa 192 (697)
.+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+.. ..+ . +||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHHH
Confidence 27899985 577889999875532 1 12367788889987653 222 2 9999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEeCCCcH-HHHHhcccee
Q 046969 193 LEILT----------KPQLLFLDEPSSGLDSASAFFVIQTLRNIA-----RDG----RTVISSIHQPSS-EVFALFDDLF 252 (697)
Q Consensus 193 ~~Ll~----------~P~lllLDEPtsgLD~~~a~~i~~~L~~la-----~~g----~tvi~~~Hqp~~-~i~~l~D~v~ 252 (697)
++|+. +|++++|||||+|||+.++.++++.|++++ +.| .+|++++|+... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 332 678899998752 3788889885
Q ss_pred -eecCCe
Q 046969 253 -LLSGGE 258 (697)
Q Consensus 253 -lL~~G~ 258 (697)
.|..|.
T Consensus 249 ~~Lpeg~ 255 (413)
T 1tq4_A 249 SDLPIYK 255 (413)
T ss_dssp HHSCGGG
T ss_pred HhCccch
Confidence 454443
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=3.3e-26 Score=228.97 Aligned_cols=181 Identities=17% Similarity=0.143 Sum_probs=122.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-cCCCeEEEEecCCCCCCCCCH
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-VDSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~~~~~i~yv~Q~~~l~~~lTV 131 (697)
..+.+++| ..+++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ..++.++|++|++.+++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 45678888 68999999999999999999999999999852 2333333232221 123468999999888888888
Q ss_pred HHHHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 046969 132 RETITYSAHLRL---PSSMSKEDIKSHVDGT------ILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLL 202 (697)
Q Consensus 132 ~E~l~~~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~ll 202 (697)
.|++........ ....++++.++++++. ++.+|+.+.++... +.|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHH
Confidence 887642211100 0022345555566654 45555555455443 3566 889999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 203 FLDEPSSGL----DSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 203 lLDEPtsgL----D~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+|||||+|+ |+..+..+.+.++++++ .|.|+|+++|++ +++.++||++++|.
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 999999998 78899999999999985 589999999997 68999999999985
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=6.5e-23 Score=200.90 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=101.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSM 147 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 147 (697)
.++|+||||||||||+++|+|.+. ....|... .+.. ..++.+||++|+. ++.+++ + +.+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 589999999999999999999874 12233221 1111 2245789999975 233332 1 1110 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 046969 148 SKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE-----ILTKPQLLFLDE--PSSGLDSASAFFVI 220 (697)
Q Consensus 148 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~-----Ll~~P~lllLDE--PtsgLD~~~a~~i~ 220 (697)
. -.+..++ .+..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------ccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 0012333 335799999999999996 999999999999 99999999999998
Q ss_pred HHHHHHHhCCCEEEEEeC--CCcHHHHHhccceeeecCCeeee
Q 046969 221 QTLRNIARDGRTVISSIH--QPSSEVFALFDDLFLLSGGETVY 261 (697)
Q Consensus 221 ~~L~~la~~g~tvi~~~H--qp~~~i~~l~D~v~lL~~G~iv~ 261 (697)
+.+++ .+.|+|+++| +....+.+++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88866 4778999996 234677778887 5566654
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.9e-25 Score=236.26 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=129.1
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCe
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~ 115 (697)
|+++||++.+ . +.+|+++|+.+++|++++|+||||||||||+++|+|++ +|+|
T Consensus 102 i~~~~vs~~y-------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I------------- 154 (305)
T 2v9p_A 102 FNYQNIELIT-------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV------------- 154 (305)
T ss_dssp HHHTTCCHHH-------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------
T ss_pred EEEEEEEEEc-------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------
Confidence 5666776644 2 46999999999999999999999999999999999987 4777
Q ss_pred EEEEecCCCCCCCCCHHH-HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 116 LAYVTQENVLLGTLTVRE-TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 116 i~yv~Q~~~l~~~lTV~E-~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
++|++|++.++.. |++| |+.+... .++ .+.+.++.+ |.+..| | ..|||||||| ||+
T Consensus 155 ~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARA 211 (305)
T 2v9p_A 155 LSFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAV 211 (305)
T ss_dssp ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCC
T ss_pred EEEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHH
Confidence 3467888888775 8886 7766311 121 234455553 444444 3 4799999999 999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHHh
Q 046969 195 ILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274 (697)
Q Consensus 195 Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~~ 274 (697)
|+.+|+||| ||+||+.++..+.. .+|++. ..+.+|+| +|++|++++.|+.++...+|..
T Consensus 212 ll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 212 QIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp EECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 999999999 99999999988862 178874 46789999 9999999999999887556654
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=8.7e-23 Score=216.27 Aligned_cols=173 Identities=20% Similarity=0.138 Sum_probs=133.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------C--CCeEEEEecCCC-C
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---------D--SGVLAYVTQENV-L 125 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---------~--~~~i~yv~Q~~~-l 125 (697)
++++|+.+++|++++|+||||||||||++.|+|++++. +|+|.++|.+... . +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35788999999999999999999999999999998764 7999999987521 0 235899999998 8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEE
Q 046969 126 LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQ--LLF 203 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~--lll 203 (697)
++.+||+|++.++.... .. ..+++.+|+.+..++.+ .+|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 99999999999864311 10 12455678877666655 4699 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc--------HHHHHhccceeeecCCeee
Q 046969 204 LDEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPS--------SEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 204 LDEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~--------~~i~~l~D~v~lL~~G~iv 260 (697)
|| ||+|||+... ++++.+ .|.|+|++||... +.+....+.|..+..|+.+
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99 9999998854 345554 5899999999421 2333455677888888653
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=1.1e-20 Score=223.25 Aligned_cols=110 Identities=31% Similarity=0.460 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046969 151 DIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTKP--QLLFLDEPSSGLDSASAFFVIQTLRNIA 227 (697)
Q Consensus 151 ~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P--~lllLDEPtsgLD~~~a~~i~~~L~~la 227 (697)
++.++++ .+..+||.+. .++.+ ..|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3455665 5778999865 67766 479999999999999999999 5999999999999999999999999999
Q ss_pred hCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhH
Q 046969 228 RDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLA 268 (697)
Q Consensus 228 ~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~ 268 (697)
+.|.|||+++|++ ++.+.+|+|++| .+|++++.|++++.
T Consensus 429 ~~G~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 429 RGGNSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp TTTCEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred HcCCEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 8899999999997 356789999999 79999999998764
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=3e-23 Score=216.44 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=96.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR--VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSM 147 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 147 (697)
.++|+||||||||||+|+|+|...+. +|+|.++|++.. ...+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 47999999999999999999998874 899999998763 234679999999999999999999998764431 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046969 148 SKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA 227 (697)
Q Consensus 148 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la 227 (697)
.. +.+.+.++ .+..+... ..||||||||++|||+++. ++|+|||+.|||+.. .+.++++.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 12222222 23334433 4799999999999999875 999999999999987 55666666
Q ss_pred hCCCEEEEEeCCC
Q 046969 228 RDGRTVISSIHQP 240 (697)
Q Consensus 228 ~~g~tvi~~~Hqp 240 (697)
+. .+||+++|.-
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999884
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=9e-22 Score=211.05 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=107.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-c--CCCeEEEEecCCCCCCCCCHHH
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-V--DSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~--~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
+++++|+.+++|++++|+|||||||||||++|+|.+++. +|.|.++|.+.- . .++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999874 899999986421 0 112233322
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeee
Q 046969 214 ASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 214 ~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv 260 (697)
.++.+.|+.+...+.|+|+|+|+++ +.+.+||+++|.+|+..
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSGG
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCcc
Confidence 2356777777654558999999985 67889999999988643
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=2.8e-24 Score=217.11 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=114.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------CCCeEEEEecCCCCCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV------DSGVLAYVTQENVLLGT 128 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~------~~~~i~yv~Q~~~l~~~ 128 (697)
..-|+|||+.+++|++++|+||||||||||+++|+|++ + |+|.+ |.+... .++.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 665321 13468999998876654
Q ss_pred CCH-HHHHH---HHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH-----HHHHhhCC
Q 046969 129 LTV-RETIT---YSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI-----ALEILTKP 199 (697)
Q Consensus 129 lTV-~E~l~---~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI-----a~~Ll~~P 199 (697)
++. .+++. +....+ ..++ +.++++++...+ ..+. ..+|||||||++| +++++.+|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 431 11211 111111 1122 235555554322 1111 3699999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEeCCCcHHHHHhccceee
Q 046969 200 QLLFLDEPSSGLDSASAFFVIQTLRNIAR-------DGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 200 ~lllLDEPtsgLD~~~a~~i~~~L~~la~-------~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
++++|||||+++|..+...+.+.|+++.. .+.+.|+++|++ +++++..|+++.
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii~ 206 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYLL 206 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHHH
Confidence 99999999999999999999999887643 345666777764 466666666654
No 79
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=7.6e-20 Score=196.73 Aligned_cols=77 Identities=30% Similarity=0.368 Sum_probs=70.0
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccc
Q 046969 177 HLRGISGGEKK------RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 177 ~~~~LSGGerq------RvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 35689999999 66777888889999999999999999999999999999988889999999995 47899999
Q ss_pred eeeec
Q 046969 251 LFLLS 255 (697)
Q Consensus 251 v~lL~ 255 (697)
++.|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=7.2e-20 Score=198.02 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=75.8
Q ss_pred cCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH
Q 046969 177 HLR-GISGGEKKRLSIALEIL---------TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA 246 (697)
Q Consensus 177 ~~~-~LSGGerqRvsIa~~Ll---------~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~ 246 (697)
.++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. . +
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---
Confidence 455 69999999999999999 8999999999999999999999999998874 699999994 3 2
Q ss_pred hccceeeecCCeeeeecChhhH
Q 046969 247 LFDDLFLLSGGETVYFGEAKLA 268 (697)
Q Consensus 247 l~D~v~lL~~G~iv~~G~~~~~ 268 (697)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988754
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=6.4e-22 Score=213.82 Aligned_cols=172 Identities=20% Similarity=0.153 Sum_probs=134.3
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----------CCCeEEEEecCCC-CC
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----------DSGVLAYVTQENV-LL 126 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----------~~~~i~yv~Q~~~-l~ 126 (697)
+++|+.+++|++++|+||||||||||++.|+|++++. +|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688889999999999999999999999999998764 7999999987521 0235899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 046969 127 GTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQ--LLFL 204 (697)
Q Consensus 127 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~--lllL 204 (697)
+.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999999864311 10 12445678877666655 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC--------cHHHHHhccceeeecCCeee
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQP--------SSEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp--------~~~i~~l~D~v~lL~~G~iv 260 (697)
| ||+|||+.... +++.+ .|.|+|++||.. -+.+....+.|..+..|+.+
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 9 99999988653 44554 589999999942 12344556788888888654
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.81 E-value=5e-22 Score=220.51 Aligned_cols=188 Identities=17% Similarity=0.120 Sum_probs=148.3
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecCc
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK---KTRV 111 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~---~~~~ 111 (697)
.++.+++++.+. ...++|+++ +.+.+||+++|+|||||||||||++|+|..+++ .|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 131 PLQRTPIEHVLD------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKD 200 (438)
T ss_dssp TTTSCCCCSBCC------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHH
T ss_pred ceEEeccceecC------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHH
Confidence 466677765542 136799999 999999999999999999999999999999874 899999998 3211
Q ss_pred ----------CCCeEEEEecC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCC
Q 046969 112 ----------DSGVLAYVTQE-NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180 (697)
Q Consensus 112 ----------~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 180 (697)
.++.++||+|+ +.+++.+||.+|+.+.+...... .+. .....|. +..
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~---------v~~~ld~------l~~ 258 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQH---------VLLIMDS------LTR 258 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCE---------EEEEEEC------HHH
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCC---------HHHHHHh------HHH
Confidence 23679999995 56778889999998876532100 000 0111121 346
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEeCCCcHHHHHhccce
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR---D-GR-----TVISSIHQPSSEVFALFDDL 251 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~---~-g~-----tvi~~~Hqp~~~i~~l~D~v 251 (697)
+|+|| |||+|| +.+|++ |+|||+.+...+.+.++++.+ + |. ||++++|+.+ ..++|++
T Consensus 259 lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v 325 (438)
T 2dpy_A 259 YAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSA 325 (438)
T ss_dssp HHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHH
T ss_pred HHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceE
Confidence 99999 999999 888988 999999999999999999876 3 64 9999999986 5789999
Q ss_pred eeecCCeeeeecChhh
Q 046969 252 FLLSGGETVYFGEAKL 267 (697)
Q Consensus 252 ~lL~~G~iv~~G~~~~ 267 (697)
+.|.+|+++..|++.+
T Consensus 326 ~~l~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 326 RAILDGHIVLSRRLAE 341 (438)
T ss_dssp HHHSSEEEEECHHHHH
T ss_pred EEEeCcEEEEeCCHHH
Confidence 9999999999987754
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=3.7e-20 Score=220.58 Aligned_cols=161 Identities=25% Similarity=0.356 Sum_probs=126.4
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHH
Q 046969 84 LLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMS------KEDIKSHVD 157 (697)
Q Consensus 84 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~ 157 (697)
...|..+++.+. .|+|.++|+++.. +..+||.|++.|...+.++.... .++. +...
T Consensus 384 C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~ 445 (916)
T 3pih_A 384 CSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEI-EKRL 445 (916)
T ss_dssp CTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-HHHH
T ss_pred chhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-HHHH
Confidence 445556666663 7999999987632 34578999998866554332111 1122 2344
Q ss_pred HHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 046969 158 GTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTKPQ--LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVI 234 (697)
Q Consensus 158 ~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~--lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi 234 (697)
+.+..+||... .|+.+ ..|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||
T Consensus 446 ~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp HHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 57778999764 57765 4799999999999999999887 9999999999999999999999999998899999
Q ss_pred EEeCCCcHHHHHhccceeee------cCCeeeeecChhhHH
Q 046969 235 SSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAV 269 (697)
Q Consensus 235 ~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~ 269 (697)
+++|++ . ....+|+|++| ++|++++.|++++..
T Consensus 521 vVtHd~-~-~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 521 VVEHDE-E-VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EECCCH-H-HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEeCCH-H-HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 999996 3 44569999999 899999999998754
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=1.3e-22 Score=215.87 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=98.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLP 144 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 144 (697)
+++|+++||+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~--- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK--- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc---
Confidence 7899999999999999999999999998762 332 458999999999988 999998653211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 145 SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 145 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
..+.....+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 148 -g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 -GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1222222355677888887 55445544 47999999999999999999999999999999986
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=7.8e-21 Score=194.92 Aligned_cols=179 Identities=11% Similarity=0.097 Sum_probs=109.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHH
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~ 132 (697)
+.+.+|+|+|+++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4677999999999999999999999999999999999975 223333 1235699999985 77789999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLD 212 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD 212 (697)
|++.+........ .+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....|
T Consensus 77 ~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9998764432110 01111122333444433 33444444 5799999999988 57888999999999988887
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHH-hccceeeecCCeeeeecChhhHHHHH
Q 046969 213 SASAFFVIQTLRNIARDGRTVISSIHQPSSEVFA-LFDDLFLLSGGETVYFGEAKLAVEFF 272 (697)
Q Consensus 213 ~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~-l~D~v~lL~~G~iv~~G~~~~~~~~f 272 (697)
.. +.++ .+.+|++++|+.. .+.+ +++++ .+|+ +.+++.+.+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 53 2222 3789999999843 4433 44444 6664 345555433
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.78 E-value=3.1e-19 Score=202.55 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 178 LRGI-SGGEKKRLSIALEILTKP--QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 178 ~~~L-SGGerqRvsIa~~Ll~~P--~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ |+|||++||+|. +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 899999999973 55679999999
Q ss_pred cCC
Q 046969 255 SGG 257 (697)
Q Consensus 255 ~~G 257 (697)
.+|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.78 E-value=1.4e-20 Score=198.16 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=118.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEecCc--CCCeEEEEecCCCCCCCCCH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG-NVLFNGKKTRV--DSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~~nG~~~~~--~~~~i~yv~Q~~~l~~~lTV 131 (697)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ..+.+.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 56899999999999999999999999999999999987653 46 56443322110 0111222222211 122
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 046969 132 RETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE-KKRLSIALEILTKPQLLFLDEPSS- 209 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~~Ll~~P~lllLDEPts- 209 (697)
.+++.... .+.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333211 11233344455444322221 111 123588998 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCCc-H--------------------HHHHhccceeeecCCee
Q 046969 210 --G---LDS-ASAFFVIQTLRNIARD-GRTVISSIHQPS-S--------------------EVFALFDDLFLLSGGET 259 (697)
Q Consensus 210 --g---LD~-~~a~~i~~~L~~la~~-g~tvi~~~Hqp~-~--------------------~i~~l~D~v~lL~~G~i 259 (697)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.++||+|++|.+|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999875 999999999952 2 57789999999998874
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=2.1e-19 Score=204.30 Aligned_cols=156 Identities=16% Similarity=0.117 Sum_probs=120.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhc
Q 046969 62 YGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHL 141 (697)
Q Consensus 62 s~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 141 (697)
++.+++|++++|+||||||||||+++++|...+ +|+ +.+.|++|++. .++.++. .++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 458999999999999999999999999998764 232 22456677641 1223322 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 046969 142 RLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA-----SA 216 (697)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~-----~a 216 (697)
..+.+ + +...|+.+..+.. +..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~~~-------~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMDFE-------E-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCCHH-------H-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCCHH-------H-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 12211 1 2245666555554 3579999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCc---------HHHHHhccceeeecCCe
Q 046969 217 FFVIQTLRNIARDGRTVISSIHQPS---------SEVFALFDDLFLLSGGE 258 (697)
Q Consensus 217 ~~i~~~L~~la~~g~tvi~~~Hqp~---------~~i~~l~D~v~lL~~G~ 258 (697)
..+.+.++.+++.|.|||+++|++. ..+..++|++++|.+|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999971 35678999999999887
No 89
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.8e-18 Score=204.99 Aligned_cols=133 Identities=29% Similarity=0.438 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHhhccCCCC---CC---HHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 046969 128 TLTVRETITYSAHLRLPSS---MS---KEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTKP- 199 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P- 199 (697)
.+||.|++.|..++.++.. .. .+++.+++ +.++.+||... .|+.++ .|||||||||.||++|..+|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCC
Confidence 5899999999877754321 00 03455566 45889999864 677664 79999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhH
Q 046969 200 -QLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLA 268 (697)
Q Consensus 200 -~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~ 268 (697)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ .+.+|+|++| .+|++++.|++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 99999999999999999999999999988899999999996 34 5689999999 79999999998764
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=7.4e-20 Score=221.29 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=120.7
Q ss_pred eEEEEE-----EEEEeccccccccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE
Q 046969 35 FLVWEN-----LFAVLPNFGNNKPTKRLLQGLYGYAEP-------GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV 102 (697)
Q Consensus 35 ~l~~~~-----l~~~~~~~~~~~~~~~iL~~vs~~i~~-------Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I 102 (697)
.|+++| |++.+. ..+.+++|+++.+++ |++++|+||||||||||||+| |+...
T Consensus 750 ~l~i~~~rHP~l~~~~~------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CEEEEEECCCC------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred eEEEEeccccEEEEEec------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 588999 876652 246799999999987 999999999999999999999 88642
Q ss_pred EECCEecCcCCCeEE-EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCC
Q 046969 103 LFNGKKTRVDSGVLA-YVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181 (697)
Q Consensus 103 ~~nG~~~~~~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 181 (697)
...+| ||||+.. .+||.|++.. + +|+.+..+. ....+
T Consensus 815 ----------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf 852 (1022)
T 2o8b_B 815 ----------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTF 852 (1022)
T ss_dssp ----------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CHH
T ss_pred ----------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhh
Confidence 01244 9999763 4566554410 1 122221111 11346
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASA-FFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a-~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
|+++++ +++|++++++|+++|||||++|+|+... ..+...|+.++++ |.++|++||++ +.+..++|++.++ +|++
T Consensus 853 ~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~ 929 (1022)
T 2o8b_B 853 FVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHM 929 (1022)
T ss_dssp HHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEE
T ss_pred HHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeE
Confidence 777664 9999999999999999999999999985 5578999999876 99999999996 4667789999887 5888
Q ss_pred e--eecCh
Q 046969 260 V--YFGEA 265 (697)
Q Consensus 260 v--~~G~~ 265 (697)
. +.|++
T Consensus 930 ~~~~~~~~ 937 (1022)
T 2o8b_B 930 ACMVENEC 937 (1022)
T ss_dssp EEC-----
T ss_pred EEEEecCc
Confidence 7 45554
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=1.6e-18 Score=207.38 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=112.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA--------GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVL 125 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La--------G~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l 125 (697)
.+.+++|+++.+++|++++|+||||||||||||+++ |..-|. ++. .++. -+.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~-------------~~~~---~d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESA-------------EVSI---VDCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEE-------------EEEC---CSEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---ccc-------------cchH---HHHH
Confidence 467999999999999999999999999999999994 322221 110 0110 0111
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEE
Q 046969 126 LGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI--LTKPQLLF 203 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L--l~~P~lll 203 (697)
+ ..+|+.+ . ..+++|+|+++++.+|+++ +++|+++|
T Consensus 709 ~----------------------------------~~ig~~d---~-----l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 709 L----------------------------------ARVGAGD---S-----QLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp E----------------------------------EECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred H----------------------------------HhcCchh---h-----HHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 1 1122211 1 1246899999888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhh
Q 046969 204 LDEPSSGLDSASAFFV-IQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 204 LDEPtsgLD~~~a~~i-~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
|||||+|||+.....+ ..+++.+++ .|.|+|++||+. ++.+++|++..+.+|++.+.++.++
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCc
Confidence 9999999999999888 677788886 499999999995 5778999999999999998887654
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=2.6e-18 Score=204.27 Aligned_cols=136 Identities=26% Similarity=0.356 Sum_probs=111.6
Q ss_pred CCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHHHHHHHcCCCcc-cCccccCccCCCCCHHHHHHHHHHHHHhhC
Q 046969 126 LGTLTVRETITYSAHLRLPSSMS------KEDIKSHVDGTILELGLHDC-ADTVIGNWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 126 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
+..+||.|.+.|...+.++.... .+++.++++ .+..+||... .|+.++ .|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl~-~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLG-FLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHH-HHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHHH-HHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhC
Confidence 45689999999966554332000 034455553 5788999864 677664 7999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee------cCCeeeeecChhhHH
Q 046969 199 --PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKLAV 269 (697)
Q Consensus 199 --P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL------~~G~iv~~G~~~~~~ 269 (697)
|++|+|||||+|||+.....+.+.|++|++.|.|||+++|++ +. .+.+|+|++| .+|++++.|++++..
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 599999999999999999999999999998999999999996 34 5689999999 799999999998754
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=1.7e-21 Score=221.55 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=118.5
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEecC----cCCCeEEEEecCCCCC
Q 046969 54 TKRLLQGLYG-YAEPGRIMAIMGPSGSGKSTLLDS--LAGRLSRHVIMTGNVLFNGKKTR----VDSGVLAYVTQENVLL 126 (697)
Q Consensus 54 ~~~iL~~vs~-~i~~Gei~aI~GpsGsGKSTLL~~--LaG~~~~~~~~~G~I~~nG~~~~----~~~~~i~yv~Q~~~l~ 126 (697)
..++|+++++ .+++||+++|+||||||||||+++ ++|..+++ +|.|+++|++.. ...+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4679999999 999999999999999999999999 78998764 799999998742 1124578999875422
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 046969 127 GTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206 (697)
Q Consensus 127 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDE 206 (697)
+. +.+ +.... .+ ...++++.++|.+..++.+ +.|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP--DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecCc--cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECC
Confidence 11 100 11000 00 0001112222222222222 235555 588999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHH--------HHHhccceeeecCCe
Q 046969 207 PSS-----GLDSASAFFVIQTLRNIARDGRTVISSIHQPSSE--------VFALFDDLFLLSGGE 258 (697)
Q Consensus 207 Pts-----gLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~--------i~~l~D~v~lL~~G~ 258 (697)
||+ +||+..+..+.+.++++++.|+|||+++|++... ...+||+|++|++|+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 998 5699999999999999988899999999998532 345699999999854
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=5.9e-20 Score=198.06 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=135.7
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---- 110 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---- 110 (697)
.++.+++++.+. ...++|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 45 PLLRQVIDQPFI------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNE 114 (347)
T ss_dssp STTCCCCCSEEC------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHH
T ss_pred CeeecccceecC------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHH
Confidence 467777776653 146799999 999999999999999999999999999999875 799999887521
Q ss_pred ---c-----CCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCC
Q 046969 111 ---V-----DSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182 (697)
Q Consensus 111 ---~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 182 (697)
. ..+.+.++.|.+. ...+.+.-... ...+.+.....+ .+.. +--..+..+|
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl---~~ld~~~~lS 173 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVL---LMMDSVTRYA 173 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEE---EEEETHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHH---HHHhhHHHHH
Confidence 0 1245778887542 22222221100 000111111111 1110 0001245799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCcHHHHHhccceeeec
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR--DGR-----TVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~--~g~-----tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+|| ||+++| +.+|++ |+|||+.....+.+.++++.+ .|. ||++++|+.+ ..+||+++.+.
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~ 240 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL 240 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee
Confidence 999 899999 688877 999999999999999999875 477 9999999986 46799999999
Q ss_pred CCeeeeecChhh
Q 046969 256 GGETVYFGEAKL 267 (697)
Q Consensus 256 ~G~iv~~G~~~~ 267 (697)
+|+++..|+..+
T Consensus 241 dG~Ivl~~~l~~ 252 (347)
T 2obl_A 241 DGHIVLTRELAE 252 (347)
T ss_dssp SEEEEBCHHHHT
T ss_pred CcEEEEeCCHHH
Confidence 999999987764
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=6.3e-19 Score=182.89 Aligned_cols=132 Identities=17% Similarity=0.273 Sum_probs=100.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-CCeEEEEecCCCCCCCCCHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-SGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
.+|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++... +...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 8999999999999999999999999998652 279999988764311 1111222221
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA 214 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~ 214 (697)
.+|+.. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 215 SAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 215 ~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
+...++ +. +..|.+|++++|+++ +.+.+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 457999999999975 5788999999864
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=1.1e-19 Score=184.91 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=105.3
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEecC----cCCCeEEEEecCCCCCCCCC
Q 046969 58 LQGL-YGYAEPGRIMAIMGPSGSGKSTLLDSLA--GRLSRHVIMTGNVLFNGKKTR----VDSGVLAYVTQENVLLGTLT 130 (697)
Q Consensus 58 L~~v-s~~i~~Gei~aI~GpsGsGKSTLL~~La--G~~~~~~~~~G~I~~nG~~~~----~~~~~i~yv~Q~~~l~~~lT 130 (697)
|+.+ .+-+++|++++|+||||||||||+++|+ |..+++ .|.+.+++.... ...+.++|++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 4443 2479999999999999999999999999 663332 566777665421 11123566666554444445
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046969 131 VRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSG 210 (697)
Q Consensus 131 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsg 210 (697)
+.++........ . .... .. ....+-++..+...+..-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~~~------~----~~~~-------------~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGLP------S----EEKF-------------VL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEccccccccc------c----ccce-------------ec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 444332211000 0 0000 00 012334454444444444679999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHH---------HHhc-cceeeec
Q 046969 211 LD-----SASAFFVIQTLRNIARDGRTVISSIHQPSSEV---------FALF-DDLFLLS 255 (697)
Q Consensus 211 LD-----~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i---------~~l~-D~v~lL~ 255 (697)
|| ...+..+.+.++.+++.|+|||+++|++. ++ ..+| |++++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 97 66677799999999888999999999974 45 5788 9999995
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.72 E-value=8e-18 Score=159.76 Aligned_cols=81 Identities=28% Similarity=0.347 Sum_probs=73.0
Q ss_pred ccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcc
Q 046969 176 WHLRGISGGEKKRLSIA------LEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFD 249 (697)
Q Consensus 176 ~~~~~LSGGerqRvsIa------~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D 249 (697)
..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++ ++.+.||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 34578999999999886 899999999999999999999999999999999987799999999997 4678999
Q ss_pred ceeee--cCCe
Q 046969 250 DLFLL--SGGE 258 (697)
Q Consensus 250 ~v~lL--~~G~ 258 (697)
++++| .+|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 99999 4554
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=3.5e-19 Score=179.03 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=95.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHH
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHV----IMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYS 138 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~----~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 138 (697)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++.... ..+.++++.|+..+.+. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~- 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYV- 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEE-
Confidence 5799999999999999999999999999543310 11335555543210 00112233333222221 22222211
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCC
Q 046969 139 AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE-KKRLSIALEILT-------KPQLLFLDEPSSG 210 (697)
Q Consensus 139 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~~Ll~-------~P~lllLDEPtsg 210 (697)
....++++ ++++..+.+++. +|+++++||||++
T Consensus 97 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 97 ---------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ---------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ---------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 01233333 333566666666 9999999999999
Q ss_pred CCHHH------------HHHHHHHHHHHHhC-CCEEEEEeCCCc---HHHHHhccceeeecCCe
Q 046969 211 LDSAS------------AFFVIQTLRNIARD-GRTVISSIHQPS---SEVFALFDDLFLLSGGE 258 (697)
Q Consensus 211 LD~~~------------a~~i~~~L~~la~~-g~tvi~~~Hqp~---~~i~~l~D~v~lL~~G~ 258 (697)
+|+.. ...+++.|++++++ |.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99842 23788888888764 999999999532 23778899999998753
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.70 E-value=1.4e-17 Score=198.69 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=107.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
.+.|++|+|+.+++|++++|+||||||||||||++++..-.. ..| .... ..-+.+..-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~~vp---a~~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------SYVP---AEEATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------CCBS---SSEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------cccc---chhhhhhHHHHHHHhCChHH
Confidence 467999999999999999999999999999999998652110 011 0000 00111221222222222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
+ .+. ....+|+||+|++.|+++ +++|+++||||||+|||+
T Consensus 728 ~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 N----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred H----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 1 111 123689999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCCcHHHHHhccceee-ecCCeeee
Q 046969 214 ASAFFVI-QTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFL-LSGGETVY 261 (697)
Q Consensus 214 ~~a~~i~-~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~l-L~~G~iv~ 261 (697)
.....+. ..++.+++ .|.|+|++||++ ++.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 9999987 77888876 599999999996 46678887642 55566544
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.69 E-value=4e-18 Score=200.49 Aligned_cols=145 Identities=23% Similarity=0.199 Sum_probs=106.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS-RHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~ 132 (697)
.+.+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. ......+++++| +++.+|+.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------ehhccceeeHHH---hhccCCHH
Confidence 46799999999 99999999999999999999999753 22 45432 111234677766 55556665
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI--LTKPQLLFLDEP--- 207 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L--l~~P~lllLDEP--- 207 (697)
|++. .++|+|+++++.+++++ +++|++++||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5432 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeee
Q 046969 208 SSGLDSASA-FFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 208 tsgLD~~~a-~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
|++||..+. ..+++.|++ .|.|+|++||++ +..+++ .--+.++++...
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEE
Confidence 999998875 578888776 589999999995 445555 223345555443
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=4.8e-20 Score=183.81 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=113.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCC--CCCCHHHHHHHHhhcc
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLL--GTLTVRETITYSAHLR 142 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~l~ 142 (697)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++|++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 478999999999999999999999998642 478999998876 67899998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 046969 143 LPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE----KKRLSIALEILTKPQLLFLDEPSSG-------L 211 (697)
Q Consensus 143 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe----rqRvsIa~~Ll~~P~lllLDEPtsg-------L 211 (697)
.+.... .+.+.+.++.+++.+..+..+ ..+|+|| +||+++|++++.+|.++++||||++ |
T Consensus 61 ~~~~~~----~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFD----LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBC----HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chhhhh----HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111111 244666777788776555443 4689996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEeCCC
Q 046969 212 DSASAFFVIQTLRNIA-RDGRTVISSIHQP 240 (697)
Q Consensus 212 D~~~a~~i~~~L~~la-~~g~tvi~~~Hqp 240 (697)
|+.....+.+.+++.. +.|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998864 5699999999974
No 102
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.67 E-value=1.1e-17 Score=197.78 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=111.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
++.+++|+++. ++|++++|+||||||||||||+|+|..... ..| .........++++.| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 46799999999 999999999999999999999999974211 012 111111123555544 555566655
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 134 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
++... + ..+|+|++ +++.+...+++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54321 1 13566665 45555667899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 214 ASAFFV-IQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 214 ~~a~~i-~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
.....+ ...++.+++ .|.++|++||++ ++.+++|++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 887775 788888888 499999999997 3567999998899998876543
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.66 E-value=2.5e-18 Score=185.67 Aligned_cols=166 Identities=20% Similarity=0.165 Sum_probs=102.8
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEecCcCCCeEEEEecCCCCCCCCCH
Q 046969 57 LLQGL-YGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHV-IMTGN-VLFNGKKTRVDSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 57 iL~~v-s~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~--~~~~-~~~G~-I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV 131 (697)
.|+.+ +|.+++|++++|+||||||||||++.|++.. ++.. ...|. |++++.... .++.+++++|+..+++. ++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HH
Confidence 45555 5899999999999999999999999999987 3320 01267 777775431 11234445554433322 33
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh-------hCCCEEEE
Q 046969 132 RETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL-------TKPQLLFL 204 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll-------~~P~lllL 204 (697)
.||+.+... --|++++|++.++++++ .+|+++++
T Consensus 197 ~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 197 LKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp GGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred hhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 333222100 01456677777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecC
Q 046969 205 DEPSSGLDSAS------------AFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264 (697)
Q Consensus 205 DEPtsgLD~~~------------a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~ 264 (697)
||||+++|+.. ..++++.|+++++ .|.|||+++|... .....++......+|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999862 4567777788776 4899999999863 4544566677777888776654
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=1.5e-18 Score=183.81 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=87.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecCc--CCCeEEEEecCCCCCCCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR-LSRHVIMTGNVLFNGKKTRV--DSGVLAYVTQENVLLGTLT 130 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~I~~nG~~~~~--~~~~i~yv~Q~~~l~~~lT 130 (697)
.+.+++++++.+ +|+||||||||||+++|+|. ..+ .+| |.++|.+... ..+.+++++|++.+...+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 567999999998 99999999999999999997 554 378 8888876431 2345789999988888899
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-
Q 046969 131 VRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS- 209 (697)
Q Consensus 131 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts- 209 (697)
|.|+..+...... .+..+..++.+. +..+.. .+++|||||||+.+|++++ ++++||||+
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9999887543210 011111122111 122333 3579999999999888875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCc
Q 046969 210 GLDSASAFFVIQTLRNIARD-GRTVISSIHQPS 241 (697)
Q Consensus 210 gLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~ 241 (697)
|||+... +.++++.++ +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 566666654 789999999964
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=1.1e-17 Score=177.22 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=108.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----------CCeEEEEecCCCCCCCCCHHHHH
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-----------SGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
+|++++|+||||||||||+++|+|++++. +|+|.++|.+.... +..++||+|+..+.|.+||.|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999874 89999999875211 13589999999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSAS 215 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~ 215 (697)
.++.... .. ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 8753210 00 001222333322221 2455669999999999999995555 566666
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCC
Q 046969 216 AFFVIQTLRNIARD-GRTVISSIHQP 240 (697)
Q Consensus 216 a~~i~~~L~~la~~-g~tvi~~~Hqp 240 (697)
..++++.++++.+. |.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 66777888887764 89999999985
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.64 E-value=5.2e-16 Score=161.89 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=106.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRL 143 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 143 (697)
-+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 488999999999999999999999998654 35553 3443321 3457888876532 01112221 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 046969 144 PSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSS--GLDSASA---FF 218 (697)
Q Consensus 144 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPts--gLD~~~a---~~ 218 (697)
.... ..++++++.+++.+..+..+ ..+|+||++++ ++++.+|+++++||||+ ++|.... .+
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1222 23456678888877665543 57999998875 68889999999999999 9998554 88
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCCc
Q 046969 219 VIQTLRNIAR-DGRTVISSIHQPS 241 (697)
Q Consensus 219 i~~~L~~la~-~g~tvi~~~Hqp~ 241 (697)
+++.|+++++ .|+|||+++|+..
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 8999999975 5999999999963
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.63 E-value=3.4e-18 Score=197.40 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=117.0
Q ss_pred eEEEEEEEEEeccccccccccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGL----------YGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF 104 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~v----------s~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 104 (697)
.++.+||+..+.. ..+++|+.+ ++.++. +||+|||||||||||++|+|+..|. .+|+|.+
T Consensus 10 ~i~~~~l~~~~~~-----~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEE-----KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTR 79 (608)
T ss_dssp ----------CHH-----HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCC
T ss_pred hhhhhhhhHHHHH-----HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEE
Confidence 4677888876532 123344333 244443 9999999999999999999998662 3899999
Q ss_pred CCEecC--------cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCc
Q 046969 105 NGKKTR--------VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNW 176 (697)
Q Consensus 105 nG~~~~--------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 176 (697)
+|.++. ..++.++|++|+..+++.+||+|++.++........ -++. +
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~------ 134 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H------ 134 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h------
Confidence 998741 123579999999999999999999987643211000 0111 0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCc---HHHH
Q 046969 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEP------SSGLDSASAFFVIQTLRNIARD--GRTVISSIHQPS---SEVF 245 (697)
Q Consensus 177 ~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP------tsgLD~~~a~~i~~~L~~la~~--g~tvi~~~Hqp~---~~i~ 245 (697)
+++.++.+...+|+++++||| |+|||+....++.+.++++..+ +.++++++|+.. .++.
T Consensus 135 ----------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 135 ----------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp ----------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred ----------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 111122222348999999999 9999999999999999997543 678889999864 1222
Q ss_pred Hhc--------cceeeecCCeeeeecChhhHHHH
Q 046969 246 ALF--------DDLFLLSGGETVYFGEAKLAVEF 271 (697)
Q Consensus 246 ~l~--------D~v~lL~~G~iv~~G~~~~~~~~ 271 (697)
+++ ..|.++.++..+..|+.+++.+.
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 332 23688889988888876554443
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=2.5e-17 Score=165.28 Aligned_cols=170 Identities=15% Similarity=0.083 Sum_probs=108.4
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 55 KRLLQGLYG-YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 55 ~~iL~~vs~-~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
...|+++.+ -+++|++++|+||||||||||++.|++...+. .|.|.+.+ .+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~--------------~~~------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVT--------------TEE------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEE--------------SSS------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEE--------------ccc------CHHH
Confidence 456888885 89999999999999999999999999876431 34444432 211 1221
Q ss_pred HHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q 046969 134 TITYSAHLRLPSS-MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQ--LLFLDEPSSG 210 (697)
Q Consensus 134 ~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~--lllLDEPtsg 210 (697)
.......+..... ..... ...++.....++ ... .....|.+|.++...+.....+|+ ++++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKK-LIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTT-EEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhCC-EEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 1111111100000 00000 000000000000 000 112459999998888888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc-------HHHHHhccceeeecCC
Q 046969 211 L--DSASAFFVIQTLRNIAR-DGRTVISSIHQPS-------SEVFALFDDLFLLSGG 257 (697)
Q Consensus 211 L--D~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~-------~~i~~l~D~v~lL~~G 257 (697)
+ |+.....+++.|+++++ .|.|||+++|+.. ..+.++||++++|.+.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 7 99999999999999976 5999999999972 3478899999999754
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=5.3e-18 Score=167.55 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=105.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLP 144 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 144 (697)
|++++|+||||||||||+++|+|.++ . +| |.++|.... ...+.+||++|+. ... ++++ +++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc--
Confidence 78999999999999999999999986 4 68 888887653 2357799999975 221 1111 1111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHH
Q 046969 145 SSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRL-SIAL---EILTKPQLLFLDE--PSSGLDSASAF 217 (697)
Q Consensus 145 ~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv-sIa~---~Ll~~P~lllLDE--PtsgLD~~~a~ 217 (697)
++..+ ..+..+|. ....+|+|||+++ ++++ |+..+|+++++|| |+..+|...
T Consensus 66 ------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~-- 124 (189)
T 2i3b_A 66 ------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF-- 124 (189)
T ss_dssp ------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH--
T ss_pred ------------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH--
Confidence 01111 11123442 2346999999988 4444 5789999999999 898899865
Q ss_pred HHHHHHHHHHhCCCEEEE---E-eCCCcHHHHHhccceeeecCCeeeeec
Q 046969 218 FVIQTLRNIARDGRTVIS---S-IHQPSSEVFALFDDLFLLSGGETVYFG 263 (697)
Q Consensus 218 ~i~~~L~~la~~g~tvi~---~-~Hqp~~~i~~l~D~v~lL~~G~iv~~G 263 (697)
++.|+++.++..++|+ + +|+.+ ..+.|+|..+.+|+++.-.
T Consensus 125 --~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 125 --IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4445555444555553 2 28853 3578999999999987643
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=1.7e-16 Score=171.49 Aligned_cols=127 Identities=22% Similarity=0.301 Sum_probs=90.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-CCeEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-SGVLAYVTQENVLLGTLTVRETITYSAHLR 142 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 142 (697)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....+++.|.......+|..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~---------- 186 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFS---------- 186 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccccCCHH----------
Confidence 67899999999999999999999999998752 146665443333211 12234555543222212211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 046969 143 LPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT 222 (697)
Q Consensus 143 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~ 222 (697)
+ +||++|..+|++|++|||| |..+ ++.
T Consensus 187 ------------------------------------------~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 187 ------------------------------------------E----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp ------------------------------------------H----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred ------------------------------------------H----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 1 8999999999999999999 6555 444
Q ss_pred HHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 223 LRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 223 L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
+.+++..|.||++|+|+++ .+ +.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 4555678999999999985 34 889999999654
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.58 E-value=7.2e-17 Score=163.09 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=102.2
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-CCeEEEEecCCCCCCCCCH----HHHH
Q 046969 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-SGVLAYVTQENVLLGTLTV----RETI 135 (697)
Q Consensus 61 vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-~~~i~yv~Q~~~l~~~lTV----~E~l 135 (697)
-.-..++|++++|+||||||||||+++|+|..+++ ...|.|.+++++.... ++.++|++|++..|+.+|+ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 34457899999999999999999999999998752 2589999988765422 3458899998766655554 2332
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSAS 215 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~ 215 (697)
.+.... .+.| +++ +.+++..+++++|| ||+.+
T Consensus 88 ~~~~~~-------------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVFGNY-------------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EETTEE-------------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHhcc-------------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 221111 0111 111 34455568999999 99999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHHHh
Q 046969 216 AFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274 (697)
Q Consensus 216 a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f~~ 274 (697)
+.++.+.+. ++.||++++|++. ++.+ |+ +.+| .++++++...+..
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 999999876 5899999999973 4433 53 6777 5677766655543
No 112
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.55 E-value=1.2e-17 Score=163.59 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=114.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSM 147 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 147 (697)
|++++|+||||||||||+++|++. .+|.+.++|.+.... ...++++|.....+.+|+.+++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLL--- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHh---
Confidence 789999999999999999999982 268899998764321 2346777766555566888888765432110
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccC---ccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 046969 148 SKEDIKSHVDGTILELGLHDCADTVIGN---WHLRGI--SGGEKKRLSIAL------EILTKPQLLFLDEPSSGLDSASA 216 (697)
Q Consensus 148 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~---~~~~~L--SGGerqRvsIa~------~Ll~~P~lllLDEPtsgLD~~~a 216 (697)
-+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| |||+...
T Consensus 72 ---------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 72 ---------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0101111111000 011234 888888888888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CcHHHHHhccceeeecCCeeeeecChhh
Q 046969 217 FFVIQTLRNIARDGRTVISSIHQ-PSSEVFALFDDLFLLSGGETVYFGEAKL 267 (697)
Q Consensus 217 ~~i~~~L~~la~~g~tvi~~~Hq-p~~~i~~l~D~v~lL~~G~iv~~G~~~~ 267 (697)
.. .+.++.+...+.++|.++|+ + +++.++||+|+ ++|+++..|+++-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC-----
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCc
Confidence 88 88888876668899999998 7 46889999999 9999999998864
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1e-16 Score=176.61 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=95.9
Q ss_pred eEEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCC
Q 046969 35 FLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSG 114 (697)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 114 (697)
.+.++||++.+ ..+.+++++|+.+ +|+||||||||||+|+|+|...+... .|.+.+++.+ .....
T Consensus 11 ~l~~~~l~~~y-------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~ 75 (418)
T 2qag_C 11 YVGFANLPNQV-------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVE 75 (418)
T ss_dssp ----CCCCCCT-------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEE
T ss_pred cEEEEecceeE-------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeee
Confidence 46777777654 2467999999998 99999999999999999998753211 2222222211 11124
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 115 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
.+++++|++.+++.+||.||+.+..... ..+....+.+.++ ..++.+++||++||++
T Consensus 76 ~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRa 132 (418)
T 2qag_C 76 QSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRR 132 (418)
T ss_dssp EEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCC
T ss_pred eEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 5899999998888999999988764321 1111111111111 1356777889999999
Q ss_pred HhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 195 ILTKPQ---LLFLDEPS-SGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 195 Ll~~P~---lllLDEPt-sgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
++.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|.-
T Consensus 133 l~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 133 QMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred hccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999999 99999999 69998873 44455543 78888888763
No 114
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=1.3e-16 Score=157.88 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=97.2
Q ss_pred EEEEEEEEEeccccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEecC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL-----SRHVIMTGNVLFNGKKTR 110 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~~nG~~~~ 110 (697)
|+++||++.+. ..+|++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|.+...+.-.
T Consensus 4 l~~~~~~~~~~--------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~- 69 (210)
T 1pui_A 4 LNYQQTHFVMS--------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE- 69 (210)
T ss_dssp -------CEEE--------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-
T ss_pred hhhhhhhheee--------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-
Confidence 67889888762 246777 788999999999999999999999999986 33 245544321100
Q ss_pred cCCCeEEEEecCCCC----CCCCC---HHHHHHHHhh-cc----------CCCCCCHHHHHHHHHHHHHHcCCCcc-cCc
Q 046969 111 VDSGVLAYVTQENVL----LGTLT---VRETITYSAH-LR----------LPSSMSKEDIKSHVDGTILELGLHDC-ADT 171 (697)
Q Consensus 111 ~~~~~i~yv~Q~~~l----~~~lT---V~E~l~~~~~-l~----------~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~ 171 (697)
.. ..+- +.+.+.+ .+.-. .+..+..... .+ .....+. ....+.++++..++... ..+
T Consensus 70 ~~-~~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~n 145 (210)
T 1pui_A 70 VA-DGKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLT 145 (210)
T ss_dssp EE-TTEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEE
T ss_pred ec-CCEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEe
Confidence 00 0010 1111111 00000 1112222111 00 0011122 22334556666666532 133
Q ss_pred cccCccCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 046969 172 VIGNWHLRGISGGEKKR-LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRT 232 (697)
Q Consensus 172 ~vg~~~~~~LSGGerqR-vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~t 232 (697)
+ ...+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 146 K-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 146 K-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred c-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 3 34689999999 89999999999999999999999999999999999998776644
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.52 E-value=1e-14 Score=145.35 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=101.6
Q ss_pred ceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 56 RLLQGLY-GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 56 ~iL~~vs-~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
+.|+++. +-+++|++++|.||||||||||++.|++ .. .+. +.|+..++.+ +..+-
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~~--------------v~~i~~~~~~----~~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GKK--------------VAYVDTEGGF----SPERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CSE--------------EEEEESSCCC----CHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CCc--------------EEEEECCCCC----CHHHH
Confidence 4567766 4799999999999999999999999998 22 122 3344433311 22111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE--KKRLSIALEILTK-PQLLFLDEPSSGL 211 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe--rqRvsIa~~Ll~~-P~lllLDEPtsgL 211 (697)
....... ....+ ++++.+. + ...++++ ++++..+++++.+ |+++++||||+++
T Consensus 63 ~~~~~~~----~~~~~-------~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 63 VQMAETR----GLNPE-------EALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHTT----TCCHH-------HHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHhc----CCChH-------HHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 1111111 11111 1222221 1 1345553 5688888999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEeCCCc------------HHHHHhccceeeecCC
Q 046969 212 DSAS--------AFFVIQTLRNIARD-GRTVISSIHQPS------------SEVFALFDDLFLLSGG 257 (697)
Q Consensus 212 D~~~--------a~~i~~~L~~la~~-g~tvi~~~Hqp~------------~~i~~l~D~v~lL~~G 257 (697)
|... ...+++.|++++++ |.|||+++|... ..+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 25567778888765 899999999864 2577899999999754
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.50 E-value=5.2e-14 Score=136.89 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee
Q 046969 178 LRGISGGEKKRLSIALEILT----KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 178 ~~~LSGGerqRvsIa~~Ll~----~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999865 46899999995 56789999997
Q ss_pred ec--CCe
Q 046969 254 LS--GGE 258 (697)
Q Consensus 254 L~--~G~ 258 (697)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.48 E-value=7.1e-17 Score=157.97 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=95.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCCCeEEEEecCCCCCCCCCHHHHHHHHhh
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---VDSGVLAYVTQENVLLGTLTVRETITYSAH 140 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 140 (697)
.+++|++++|+||||||||||+++|+|.. + .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~--~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP--G---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS--S---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc--C---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 36799999999999999999999999982 2 699999987642 11234677777654 45789999877543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 046969 141 LRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220 (697)
Q Consensus 141 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~ 220 (697)
....... ...++.++..+++....+. +..+..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 78 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGY-----FVILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSC-----EEEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCC-----eEEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 2100000 0000111111111111100 1112469999999999999999999876 6888777777
Q ss_pred HHHHHHHhCCCEEEEEeC
Q 046969 221 QTLRNIARDGRTVISSIH 238 (697)
Q Consensus 221 ~~L~~la~~g~tvi~~~H 238 (697)
+.++.+...+..+|.+++
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 777665433334444443
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=1.2e-14 Score=158.22 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=98.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CCCeEEEEecCCCCCCCCCHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-DSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
.+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.+... .++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee-----------
Confidence 3567766 7899999999999999999999999998652 16999877765432 234577888741
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA 214 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~ 214 (697)
+|+.. ..+ +.+|+.+|..+|+++++|||+ |..
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 22211 134 469999999999999999999 766
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeec
Q 046969 215 SAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLS 255 (697)
Q Consensus 215 ~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~ 255 (697)
+... .++. +..|.+|+.|+|..+ +.+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6443 3443 456899999999964 778999998875
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.46 E-value=2.6e-14 Score=154.94 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=100.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-Cc--CCCeEEEEe-cCCCCCCCCCHH
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT-RV--DSGVLAYVT-QENVLLGTLTVR 132 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~-~~--~~~~i~yv~-Q~~~l~~~lTV~ 132 (697)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|... .. .++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 349999999999999999999999999999999999874 89999998532 11 346788988 65432
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLD 212 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD 212 (697)
+++++...|..|+.++..+|+.+++||++.
T Consensus 234 -----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~--- 263 (361)
T 2gza_A 234 -----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG--- 263 (361)
T ss_dssp ----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS---
T ss_pred -----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH---
Confidence 011222345555666666899999999985
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCee
Q 046969 213 SASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGET 259 (697)
Q Consensus 213 ~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~i 259 (697)
.++.+.|+.+.....|++.++|..+ ....+||+..+..|..
T Consensus 264 ----~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~ 304 (361)
T 2gza_A 264 ----GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQNR 304 (361)
T ss_dssp ----THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTST
T ss_pred ----HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhccc
Confidence 2455666666554568899999964 6788999999987754
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.45 E-value=1.3e-16 Score=173.11 Aligned_cols=168 Identities=15% Similarity=0.002 Sum_probs=103.5
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEecCcCCCeEEEEecCCCCCCCCC
Q 046969 57 LLQGLYGYAEP--GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMT----GNVLFNGKKTRVDSGVLAYVTQENVLLGTLT 130 (697)
Q Consensus 57 iL~~vs~~i~~--Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~----G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lT 130 (697)
+.+.|+..+++ |+.++|+||||||||||+++|+|++++. + |+|.+++... ..+..+....
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 46789999999 9999999999999999999999998873 6 6665532100 0000111112
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCcccCccccCccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC-
Q 046969 131 VRETITYSAHLRLPSSMSKEDIKSHVDGTILEL--GLHDCADTVIGNWHLRGISGGEKKRLSIALEIL-TKPQLLFLDE- 206 (697)
Q Consensus 131 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll-~~P~lllLDE- 206 (697)
. +++.+...- .. .....+.+.+ +..+..++. ...+|+|++||..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~--------~~--~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR--------YI--DYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH--------HH--HHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH--------HH--HHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 333332110 00 0000000000 001111111 1246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 207 --PS------SGLDSASAFFVIQTLRNIAR-DGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 207 --Pt------sgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
|+ .++|...+..+.+.|+++.+ .|.+||+++|. + +..+++|++.++++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 65 58999999999999999865 48899999875 3 56778888877753
No 121
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.43 E-value=6.4e-14 Score=151.00 Aligned_cols=120 Identities=25% Similarity=0.200 Sum_probs=88.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEecC-cCCCeEEEEecCCCCCCCCCHHHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS-RHVIMTGNVLFN-GKKTR-VDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~n-G~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |+... .....+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 4555554 4899999999999999999999999987 64 8999987 75542 234678999999999999999984
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEI 195 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~L 195 (697)
. + ...+.++..+.+.++++.+|+.+..|... .++| ||+||++||+++
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13556677778888999999988887765 4799 999999999754
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.42 E-value=1.5e-16 Score=162.77 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=98.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEecCc-CCCeEEEEecCCCCCCCCCHHHHHHHHhhc-
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLA---GRLSRHVIMTGNVLFNGKKTRV-DSGVLAYVTQENVLLGTLTVRETITYSAHL- 141 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~I~~nG~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l- 141 (697)
++++++|+||||||||||+++|+ |...+ .+|+|.++|.+... ....+.+++|+..+++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98765 37888887654211 112345567888888888999999875321
Q ss_pred -----cCCCCCCHHHHHHHHHHHHH--HcC------------CCcccCccccCccCCCCCHHHHHHHHHHHHH-hhCCCE
Q 046969 142 -----RLPSSMSKEDIKSHVDGTIL--ELG------------LHDCADTVIGNWHLRGISGGEKKRLSIALEI-LTKPQL 201 (697)
Q Consensus 142 -----~~~~~~~~~~~~~~v~~~l~--~lg------------L~~~~d~~vg~~~~~~LSGGerqRvsIa~~L-l~~P~l 201 (697)
... ..+... ..++.+.. ..+ ++...++. +..+|| |+ +++ +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 111111 11222211 112 12222333 346898 66 677 899999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 046969 202 LFLD----EPSSGLDSASAFFVIQTLRNIARD 229 (697)
Q Consensus 202 llLD----EPtsgLD~~~a~~i~~~L~~la~~ 229 (697)
++|| |||+|||..+...+.+.|+++.++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9999 999999999999999999988765
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=5.6e-15 Score=162.38 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=112.6
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCH
Q 046969 54 TKRLLQGLYGYAEPGRI--MAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei--~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV 131 (697)
..+ |+++|+.+++|++ ++|+||||||||||+|+|+|..- .|.-.- ........+.++|++|++.+++.+||
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEeeEEEEeecCccccccch
Confidence 345 9999999999999 99999999999999999999842 222111 00111112468999999998889999
Q ss_pred HHHHHHHhhccCCCCCC--HHHHHHHHHHHHHHc-CCCc----ccCcc----cc--CccCCCCCHHHHHHHHHHHHHhhC
Q 046969 132 RETITYSAHLRLPSSMS--KEDIKSHVDGTILEL-GLHD----CADTV----IG--NWHLRGISGGEKKRLSIALEILTK 198 (697)
Q Consensus 132 ~E~l~~~~~l~~~~~~~--~~~~~~~v~~~l~~l-gL~~----~~d~~----vg--~~~~~~LSGGerqRvsIa~~Ll~~ 198 (697)
.||+.|+.......... .+...+..++.+... ++.. ..|+. +. .....+++-.+ +.|+++|..+
T Consensus 100 ~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~ 176 (427)
T 2qag_B 100 VSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSK 176 (427)
T ss_dssp EEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSC
T ss_pred hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhC
Confidence 99987653211000000 011234455566654 5432 22332 11 00113677776 7899999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Q 046969 199 PQLLFLDEPSSGLDSASAFFVIQTLRN-IARDGRTVISSIHQ 239 (697)
Q Consensus 199 P~lllLDEPtsgLD~~~a~~i~~~L~~-la~~g~tvi~~~Hq 239 (697)
++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 177 VNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999986 77789999887754
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.41 E-value=3.5e-17 Score=174.45 Aligned_cols=155 Identities=15% Similarity=0.074 Sum_probs=98.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEecCcC--------------------CCeEEEE---e
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLSRH-----VIMTGNVLFNGKKTRVD--------------------SGVLAYV---T 120 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~I~~nG~~~~~~--------------------~~~i~yv---~ 120 (697)
++++|+|+||||||||||.|+|..+.. ....|+|.+||.++... .+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999986210 12489999999875321 0124555 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCC---CHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh
Q 046969 121 QENVLLGTLTVRETITYSAHLRLPSSM---SKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT 197 (697)
Q Consensus 121 Q~~~l~~~lTV~E~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~ 197 (697)
|+..+++..+|.||..++.....-... +.......++.++..+++.+..+... ++|+|||||+..++.+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 666555666777766542100000000 00000001111222234443333322 589999999998888889
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888875 5899999999874
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=9.3e-14 Score=140.49 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=89.1
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHH
Q 046969 58 LQGLY-GYAEPGRIMAIMGPSGSGKSTLLDSLAG--RLSRH--VIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 58 L~~vs-~~i~~Gei~aI~GpsGsGKSTLL~~LaG--~~~~~--~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~ 132 (697)
|+.+- +-+++|++++|+||||||||||++.|++ ..++. ....|.+++++. +.+ ...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~---------------~~~----~~~ 73 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE---------------GTF----RPE 73 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------------SCC----CHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC---------------CCc----CHH
Confidence 44433 5799999999999999999999999999 44331 001344555443 211 111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 046969 133 ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR-LSIALEIL--TKPQLLFLDEPSS 209 (697)
Q Consensus 133 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-vsIa~~Ll--~~P~lllLDEPts 209 (697)
+.......+. ...++ +++.+. .....++.+... +.-+.+++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g----~~~~~-------~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYG----LSGSD-------VLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTT----CCHHH-------HHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcC----CCHHH-------HhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1111111111 11111 111110 012345555433 33344444 4899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEeCCCcHH------------------HHHhccceeeecCC
Q 046969 210 GLDSA-------S-----AFFVIQTLRNIARD-GRTVISSIHQPSSE------------------VFALFDDLFLLSGG 257 (697)
Q Consensus 210 gLD~~-------~-----a~~i~~~L~~la~~-g~tvi~~~Hqp~~~------------------i~~l~D~v~lL~~G 257 (697)
.+|+. . ...+++.|++++++ |.|||+++|..... +..++|.+++|..|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99975 3 34567777777765 99999999974321 12279999999865
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=9.5e-13 Score=143.08 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=67.4
Q ss_pred cCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhcc
Q 046969 177 HLRGISGGEKKRL------SIALEILTK-PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFD 249 (697)
Q Consensus 177 ~~~~LSGGerqRv------sIa~~Ll~~-P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D 249 (697)
.+..+|||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||+++|++. +...+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCC
Confidence 3468999999988 567888999 99999999999999999999999999974 3579999999973 678999
Q ss_pred ceeeec
Q 046969 250 DLFLLS 255 (697)
Q Consensus 250 ~v~lL~ 255 (697)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.37 E-value=3.3e-15 Score=145.10 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=88.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-c-------CC-CeEE----EEecCCCCCCCCCHHHHH
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-V-------DS-GVLA----YVTQENVLLGTLTVRETI 135 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~-------~~-~~i~----yv~Q~~~l~~~lTV~E~l 135 (697)
++++|+|+||||||||+++|+|.+++.....|.|.+||.++. . .+ +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998763223799999998731 1 11 2355 888887655 110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILE-LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLL-------FLDEP 207 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~ll-------lLDEP 207 (697)
. . ++....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111234555555 43 47899986 69999999999999999999873 22454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 046969 208 SSG---LDSASAFFVIQTLRNIARDG 230 (697)
Q Consensus 208 tsg---LD~~~a~~i~~~L~~la~~g 230 (697)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455677777776666654
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.36 E-value=1.3e-14 Score=139.20 Aligned_cols=79 Identities=20% Similarity=0.152 Sum_probs=66.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRE 133 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E 133 (697)
.+.+++++|+.+++|++++|+||||||||||+|+|+|.+ +. +|+|.++|.++...+....+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 467899999999999999999999999999999999998 53 8999999987531111012799998888 899999
Q ss_pred HHHH
Q 046969 134 TITY 137 (697)
Q Consensus 134 ~l~~ 137 (697)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=2.9e-13 Score=128.30 Aligned_cols=99 Identities=17% Similarity=0.328 Sum_probs=73.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+..-.
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 456666 8999999999999999999999998754 34 01234433221100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSAS 215 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~ 215 (697)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66666
Q ss_pred HHHHHHHHHHHHhCCCE-EEEEeCCCcHH
Q 046969 216 AFFVIQTLRNIARDGRT-VISSIHQPSSE 243 (697)
Q Consensus 216 a~~i~~~L~~la~~g~t-vi~~~Hqp~~~ 243 (697)
+..+.+.+.++.++|++ +|+++|.+..+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence 88899999998888888 89999975433
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=1.5e-13 Score=133.46 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=43.5
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHH
Q 046969 195 ILTKPQLLFLDEPSS-GLDSASAFFVIQTLRNIARDGRTVISSIHQPSSE 243 (697)
Q Consensus 195 Ll~~P~lllLDEPts-gLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~ 243 (697)
.+.+|++|+||||++ ++|+.....+.+.+.+..++|+++|+++|.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999985 9999999999999999888899999999998643
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.33 E-value=7.6e-14 Score=153.62 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=101.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITY 137 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 137 (697)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......+++|.+++. ..+++.++.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 479999999999999999999999999999999743 1233322211233555555430 00111111000
Q ss_pred ---HhhccCCCCCCHHHHH--HHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046969 138 ---SAHLRLPSSMSKEDIK--SHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLD 212 (697)
Q Consensus 138 ---~~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD 212 (697)
.... ........+ ++++.++..+++. +. ....+|+||+||+.+|++|+.+|.++++ +++|
T Consensus 216 i~~a~~~---~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD 280 (416)
T 1udx_A 216 IEGASEG---KGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD 280 (416)
T ss_dssp CCCGGGS---CCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred ccchhhh---hhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence 0000 011111100 1122222223332 22 3357999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHH-hCCCEEEEEeCCCcHHHHHhccceee
Q 046969 213 SASAFFVIQTLRNIA-RDGRTVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 213 ~~~a~~i~~~L~~la-~~g~tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
...+ ..++.+++.. +.|.+++.++..-...+.++++.+.-
T Consensus 281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 9887 5555555544 45777766554334567777777653
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.32 E-value=6.7e-14 Score=147.20 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=88.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhh----c
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAH----L 141 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~----l 141 (697)
+++.+++|.||||||||||.+.|++.+.+ .| . ..+.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 47889999999999999999999998764 22 0 12446677999998876 89999987631 1
Q ss_pred c---CCCCCCHHHHHHHHHHHHHHcCCC--cc--cCccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCC
Q 046969 142 R---LPSSMSKEDIKSHVDGTILELGLH--DC--ADTVIGNWHLRGISGGEKKRLSIA--LEILTKPQLLFLDEPSSGLD 212 (697)
Q Consensus 142 ~---~~~~~~~~~~~~~v~~~l~~lgL~--~~--~d~~vg~~~~~~LSGGerqRvsIa--~~Ll~~P~lllLDEPtsgLD 212 (697)
. .|..... +...+.++.+.-. .. ....+. .+...+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBCH----HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhHH----HHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 1332222 3344555655332 00 111111 13367999999999987 555 999999999999999
Q ss_pred HHH
Q 046969 213 SAS 215 (697)
Q Consensus 213 ~~~ 215 (697)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=1.5e-13 Score=146.79 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=98.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----------CCeEEEEecCCCCCCCCCHHHH
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-----------SGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
++|++++|+||||||||||++.|+|.+++. .|+|.++|.+.... +-.+.+++|+..+.|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998764 89999999885311 1236699999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA 214 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~ 214 (697)
+.++..... . . .+++..|+.+..+... ..|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d--------~--vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--D--------V--VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--S--------E--EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--h--------h--hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 987643110 0 0 0111223332222211 2233 38888887777777774443
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 046969 215 SAFFVIQTLRNIAR-DGRTVISSIHQP 240 (697)
Q Consensus 215 ~a~~i~~~L~~la~-~g~tvi~~~Hqp 240 (697)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466667777764 589999999963
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=8.4e-15 Score=157.32 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=107.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------CCCeEEEEecCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---------DSGVLAYVTQENV 124 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---------~~~~i~yv~Q~~~ 124 (697)
.+.+|+++|+.+++|++++|+||||||||||+|+|+|.+.+. +|+|.+.|.+... .+..++|++|++.
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 357999999999999999999999999999999999998763 7999999887521 1345899999987
Q ss_pred CCCCC------------CHHHHHHHHh-----------------------------hccCCCCCCHHHHH---HHHHHHH
Q 046969 125 LLGTL------------TVRETITYSA-----------------------------HLRLPSSMSKEDIK---SHVDGTI 160 (697)
Q Consensus 125 l~~~l------------TV~E~l~~~~-----------------------------~l~~~~~~~~~~~~---~~v~~~l 160 (697)
++... +++|.+...- .+..+. ..++.+ +.+.+..
T Consensus 118 ~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~ 195 (337)
T 2qm8_A 118 AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELA 195 (337)
T ss_dssp EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHC
T ss_pred cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccc
Confidence 76532 2333331110 000000 001100 0011111
Q ss_pred HHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046969 161 LELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILT------KPQLLFLDEPSSGLDSASAFFVIQTLRNIAR 228 (697)
Q Consensus 161 ~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~ 228 (697)
..+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+.+.|.++..
T Consensus 196 ~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 196 DMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp SEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11111 112210 113579999999999999987 688887 999999999999999988654
No 135
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.28 E-value=4.8e-12 Score=140.16 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeee
Q 046969 179 RGISGGEKKRLSIALEIL----TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll----~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++..+|.++|+++|++ ...+.||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999999995 567889999999
Q ss_pred c
Q 046969 255 S 255 (697)
Q Consensus 255 ~ 255 (697)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=2e-13 Score=144.45 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=81.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCcC-----CCeEEEEecCCCCC-----CCCCHH
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF---NGKKTRVD-----SGVLAYVTQENVLL-----GTLTVR 132 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~-----~~~i~yv~Q~~~l~-----~~lTV~ 132 (697)
.+|++++|+||||||||||+|+|+ ..++. +|+|.+ +|+..... .+.+|||+|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 479999999999999999999999 87764 899999 88765311 13579999998553 78999
Q ss_pred HHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCccCCCCCHHHHHHHHHHHH
Q 046969 133 ETI--TYSA----HLRLPSSMSKEDIKSHVDGTILELGLHD-CADTVIGNWHLRGISGGEKKRLSIALE 194 (697)
Q Consensus 133 E~l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~~ 194 (697)
|++ .|.. .++.......++....++++++.++|.+ ..+++. +.|||.++|++.||++
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4431 0111111122233456889999999986 666655 4699999999999874
No 137
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.24 E-value=1e-12 Score=146.45 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=103.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----------CCCeEEEEecCCCCC
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----------DSGVLAYVTQENVLL 126 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----------~~~~i~yv~Q~~~l~ 126 (697)
-+++|+.+++|++++|+||||||||||+++|+|++++. .|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998763 7999998765421 134589999998888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh-hCC-CEEEE
Q 046969 127 GTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL-TKP-QLLFL 204 (697)
Q Consensus 127 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll-~~P-~lllL 204 (697)
+.+||++++.++..-. .. .+ +++..|+.+... .+-..-+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~----~D------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CC------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8899999999874311 00 00 111122211110 12223357888888664 457 45655
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 046969 205 DEPSSGLDSASAFFVIQTLRNIAR-DGRTVISSIHQ 239 (697)
Q Consensus 205 DEPtsgLD~~~a~~i~~~L~~la~-~g~tvi~~~Hq 239 (697)
.++|+|.|.. +.++.+.+ -|.|.|+.||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886543 33445544 48899999994
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=6.6e-12 Score=134.47 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=75.2
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEecC---cCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAG-RLSRHVIMTGNVLFNGKKTR---VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSS 146 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~I~~nG~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 146 (697)
+.|.||||+|||||+++|+| +..++ .|++.++|.+.. .....+++++|.+.+.-... + . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GN 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CC
Confidence 89999999999999999999 56653 799999987643 12355788888765421110 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046969 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226 (697)
Q Consensus 147 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~l 226 (697)
..... +.+.++.+......+..+ .+|| +..+|+++++|||++ ||..++..+.+.|.+.
T Consensus 104 ~~~~~----~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRIV----IQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHHH----HHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchHH----HHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 11112 233333332111111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEeCCCcH
Q 046969 227 ARDGRTVISSIHQPSS 242 (697)
Q Consensus 227 a~~g~tvi~~~Hqp~~ 242 (697)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999853
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=2.1e-14 Score=162.18 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=109.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cCc-CCCeEEEEecCCCCCCCCCHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-TRV-DSGVLAYVTQENVLLGTLTVR 132 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-~~~-~~~~i~yv~Q~~~l~~~lTV~ 132 (697)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|.++|.. ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999875 8999999865 222 234566666654322223444
Q ss_pred HHHHHHhhccCC-----CCCCHHHHHH------------------HHHHHHHHcCC-----Cc----ccCccccCccCCC
Q 046969 133 ETITYSAHLRLP-----SSMSKEDIKS------------------HVDGTILELGL-----HD----CADTVIGNWHLRG 180 (697)
Q Consensus 133 E~l~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~d~~vg~~~~~~ 180 (697)
+.+..+.+.+ | ......+... .++++++.+.. .. ..|..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 4443322211 1 0111111111 01222222222 11 111111 12235
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EeCCCcHHHHHhcc
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVIS--SIHQPSSEVFALFD 249 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~--~~Hqp~~~i~~l~D 249 (697)
+|||||||+.++. + | |+|||+.+...+++.|.++..+|+|+++ ++|+. .++.+.++
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHHT
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHcC
Confidence 7999999877652 1 7 9999998887777777777667889885 88986 45665553
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.22 E-value=6.1e-14 Score=139.83 Aligned_cols=164 Identities=20% Similarity=0.160 Sum_probs=93.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLP 144 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 144 (697)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++..+.. +..+++....+...+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5799999999999999999999999998641 2 236677777665532 222222110111111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 046969 145 SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA-LEILTKPQLLFLDEPSSGLDSASAFFVIQTL 223 (697)
Q Consensus 145 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa-~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L 223 (697)
......... +.+..+...+..+..+.+ ...+.|+||+||++++ +.++.++.++++|||..
T Consensus 81 ~~~~~~~~~----~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDFEGFQ----RLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCHHHHH----HHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhHHHHH----HHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 112222222 233332222222333333 2235799999999987 77778887777888731
Q ss_pred HHHHhCCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChhhHHHHH
Q 046969 224 RNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFF 272 (697)
Q Consensus 224 ~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~~~~~~f 272 (697)
.++...--.+|++.+.....+.++..|. +..|. +.+++...+
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 0112222367777777544466677773 34454 445555544
No 141
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=4.9e-14 Score=153.80 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=120.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCceeEEEECCEecC------cCCCe---EEEEecCCCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLS---------RHVIMTGNVLFNGKKTR------VDSGV---LAYVTQENVL 125 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~---------~~~~~~G~I~~nG~~~~------~~~~~---i~yv~Q~~~l 125 (697)
.+++|+.++|+|+||||||||+|+|+|... .-....|.|.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 00135899999985321 11122 3477888888
Q ss_pred CCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCC--CE
Q 046969 126 LGTLTVRETI--TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKP--QL 201 (697)
Q Consensus 126 ~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P--~l 201 (697)
...++..|++ .|.+.++.. +.++..++..+ |+ .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8888877766 454444311 11111112211 12 223356553 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCcHHHHHhcccee-eecCC-eeeeecChhh
Q 046969 202 LFLDEPSSGLDSASAFFVIQTLRNI-ARDGRTVISSIHQPSSEVFALFDDLF-LLSGG-ETVYFGEAKL 267 (697)
Q Consensus 202 llLDEPtsgLD~~~a~~i~~~L~~l-a~~g~tvi~~~Hqp~~~i~~l~D~v~-lL~~G-~iv~~G~~~~ 267 (697)
+++|||+.++|.......++.++.+ ++.|.|++ +|.. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 77788864 8985 68899999999 99999 9998887543
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.17 E-value=5.7e-11 Score=130.16 Aligned_cols=154 Identities=13% Similarity=0.204 Sum_probs=88.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHH
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSL--AGRLSRHV--IMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYS 138 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~L--aG~~~~~~--~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 138 (697)
+-+++|++++|+||||||||||++.| ++..++.. .-.+.|++++. +.+ ........+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E---------------~~~----~~~rl~~~a 233 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE---------------GTF----RPVRLVSIA 233 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------------SCC----CHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC---------------Ccc----CHHHHHHHH
Confidence 67999999999999999999999944 56655420 01234444443 211 111111111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH
Q 046969 139 AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISG-GEKKRLSIALEIL--TKPQLLFLDEPSSGLDSAS 215 (697)
Q Consensus 139 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRvsIa~~Ll--~~P~lllLDEPtsgLD~~~ 215 (697)
.++. +..+ .+++.+ .+. +..++ .+.+.+..+.+++ .+|+++++|||++.+|...
T Consensus 234 ~~~g----l~~~-------~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 234 QRFG----LDPD-------DALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp HHTT----CCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred HHcC----CChH-------hHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 1111 1111 111111 111 11222 2233444444444 4699999999999999654
Q ss_pred H------------HHHHHHHHHHHhC-CCEEEEEeCCCc------------------HHHHHhccceeeecCCe
Q 046969 216 A------------FFVIQTLRNIARD-GRTVISSIHQPS------------------SEVFALFDDLFLLSGGE 258 (697)
Q Consensus 216 a------------~~i~~~L~~la~~-g~tvi~~~Hqp~------------------~~i~~l~D~v~lL~~G~ 258 (697)
. .++++.|++++++ |.|||+++|... ..+...+|.++.|.+++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 6788899999875 999999999821 22456788888887653
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.15 E-value=5.4e-14 Score=154.96 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=92.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---------CCeEEEEe-----
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD---------SGVLAYVT----- 120 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~---------~~~i~yv~----- 120 (697)
+.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.++|.++... .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4477777 4 3899999999999999999999999998764 79999988775311 12344544
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH
Q 046969 121 ----QENVL--LGT----LTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189 (697)
Q Consensus 121 ----Q~~~l--~~~----lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 189 (697)
|++.. ++. .|+.+++.++..-.+. ......+..+.++ .+..+|+.+.. . ...|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~-----~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--I-----SSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--H-----HHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--H-----HHHHHHHHHHH-
Confidence 87654 344 6899998876421100 0000011112223 45678887643 2 24799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 046969 190 SIALEILTKPQLLFL 204 (697)
Q Consensus 190 sIa~~Ll~~P~lllL 204 (697)
||++|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999999763
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.07 E-value=7.6e-13 Score=141.71 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=107.4
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecC-----cCCCeEEEEe
Q 046969 54 TKRLLQGLYGYAEPG-------RIMAIMGPSGSGKSTLLDSLAGRLSRHV-IMTGNVLFNGKKTR-----VDSGVLAYVT 120 (697)
Q Consensus 54 ~~~iL~~vs~~i~~G-------ei~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~-----~~~~~i~yv~ 120 (697)
.+.++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|++..++.+.. .....+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456889999999877 8999999999999999999999873211 23666666555431 1245699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 046969 121 QENVLLGTLTVRETITYSAHLRLPSS-MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKP 199 (697)
Q Consensus 121 Q~~~l~~~lTV~E~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P 199 (697)
|.+.+.+ ++.|++..........- .......+.++..+..++|.. +++.. ..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce-------
Confidence 9887765 78888855433211000 001112233444444455544 45544 47999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccc
Q 046969 200 QLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 200 ~lllLDEPtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
.+||+.+..++.+.|++.++. | +.|++ +.+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 789999999999999998763 4 24664 345555554
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=1e-11 Score=131.20 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=66.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCcC-----CCeEEEEecCCC------------
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF---NGKKTRVD-----SGVLAYVTQENV------------ 124 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~-----~~~i~yv~Q~~~------------ 124 (697)
+.+|++++|+||||||||||||+|+|+.++. +|+|.+ +|+..... .+.+|||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4579999999999999999999999999874 899999 88765311 135799999974
Q ss_pred ----CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccCccc
Q 046969 125 ----LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH-DCADTVI 173 (697)
Q Consensus 125 ----l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~v 173 (697)
++|.+|+ ||+.|.. +. . ..+...+++++++.+||. +.++.+.
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 5889999 9988753 21 1 122345688999999995 5666544
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.02 E-value=2.4e-11 Score=128.43 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=66.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCcCC---Ce-EEEEecCCCCCC----CCCH
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF---NGKKTRVDS---GV-LAYVTQENVLLG----TLTV 131 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~---~~-i~yv~Q~~~l~~----~lTV 131 (697)
+.+.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+...... +. ++|++|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999998764 899998 777543211 11 699999987755 6899
Q ss_pred HHHHH--HHh------hccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHH
Q 046969 132 RETIT--YSA------HLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKR 188 (697)
Q Consensus 132 ~E~l~--~~~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 188 (697)
|++. |.. .|+.......++....++++++.++|.+.+.... ..++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 321 1222211112223456888999999976433222 2577777763
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.01 E-value=3.3e-14 Score=140.96 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=42.8
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceeeecC
Q 046969 191 IAL-EILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSG 256 (697)
Q Consensus 191 Ia~-~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~lL~~ 256 (697)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..||.++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 344 677788888889999999999999999999887653 2234532 56899888763
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.95 E-value=3.2e-13 Score=140.83 Aligned_cols=127 Identities=15% Similarity=0.199 Sum_probs=86.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----CCeEEEEecCC-CCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-----SGVLAYVTQEN-VLLG 127 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~i~yv~Q~~-~l~~ 127 (697)
...+++++++.+++| ++|.||||||||||+++|+|...+ |.|.++|.++... .+.+++++|+. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 356899999999999 999999999999999999998753 7899998765211 13466777764 4455
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP 207 (697)
.+++.|++......+ ...+ .+ .+.+..++. ...|||||+||+.|++++..+|++| ||+
T Consensus 105 ~i~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-----SDRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc-----CCCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 556666554322111 0000 00 012222332 3469999999999999999999986 877
Q ss_pred CC
Q 046969 208 SS 209 (697)
Q Consensus 208 ts 209 (697)
+.
T Consensus 163 l~ 164 (274)
T 2x8a_A 163 IL 164 (274)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.93 E-value=2.8e-09 Score=107.58 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=48.9
Q ss_pred HHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCcHH-------HHHhccceeeecC
Q 046969 190 SIALEIL--TKPQLLFLDEPSSGL--DSASAFFVIQTLRNIAR-DGRTVISSIHQPSSE-------VFALFDDLFLLSG 256 (697)
Q Consensus 190 sIa~~Ll--~~P~lllLDEPtsgL--D~~~a~~i~~~L~~la~-~g~tvi~~~Hqp~~~-------i~~l~D~v~lL~~ 256 (697)
..+..++ .+|+++++|||++.+ |.....+.+..|.++++ .|.|||+++|..... +.+.+|.++.|..
T Consensus 118 ~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 118 EVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3334444 579999999999988 66556667777777664 589999999986531 4578899999964
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.88 E-value=9.1e-13 Score=133.26 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=77.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEecCcC-CCeEEEEecCCCCCCCCCH
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA-GRLSRHVIMTGNVLFNGKKTRVD-SGVLAYVTQENVLLGTLTV 131 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La-G~~~~~~~~~G~I~~nG~~~~~~-~~~i~yv~Q~~~l~~~lTV 131 (697)
..+..+++|+.+++|++++|+||||||||||+++|+ |+.++ ..+.+.+...+.... ...++|++++...+..+++
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN---IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----C---EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC---cccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 456789999999999999999999999999999999 98753 111111111111100 1123366665444433333
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH-HHH-HHHhhCCCEEEEeCCC
Q 046969 132 RETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL-SIA-LEILTKPQLLFLDEPS 208 (697)
Q Consensus 132 ~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv-sIa-~~Ll~~P~lllLDEPt 208 (697)
.+++......... ...+.++ +++.++. +-.-..|.-+ .+ ...-++++ .-+ ..++..|+...+||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----i~~~~~~-~~~vild~~~-----~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl 158 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKN----LEDNVDK-GVSTLLVIDW-----QG-AFKFMEMMREHVVSIFIMPPSMEELRRRL 158 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTT----HHHHHHH-TCEEEEECCH-----HH-HHHHHHHSGGGEEEEEEECSCHHHHHHC-
T ss_pred cCceehhhhhccccCCCCHHH----HHHHHHc-CCeEEEEcCH-----HH-HHHHHHhcCCCeEEEEEECCcHHHHHHHH
Confidence 3322211000000 0001111 2233332 1111111100 00 11112332 111 1234566777778899
Q ss_pred CCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCCcHHHHHhccceeeecCCeeeeecChh
Q 046969 209 SGLDSASAFFVIQTLRNIAR-----DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266 (697)
Q Consensus 209 sgLD~~~a~~i~~~L~~la~-----~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~iv~~G~~~ 266 (697)
.+.|..+...+.+.|++... ....+|++.|++ +++.+..++++-..+++..+.++.+
T Consensus 159 ~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~-e~~~~~l~~~i~~~~~~~~~~~~~~ 220 (231)
T 3lnc_A 159 CGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDI-EETADRISNILRAEQMKTCRQVGLR 220 (231)
T ss_dssp -------------CHHHHHHHHTTGGGSSEEEECSSH-HHHHHHHHHHHHHHHTBGGGEESHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCH-HHHHHHHHHHHHHHhhccccCcchh
Confidence 99998888888777765442 134666667764 5677777777665566655554443
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.86 E-value=4.2e-09 Score=117.34 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=112.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-..|+++++-+++|+++.|.|++|+|||||+..+++..... .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 35688888889999999999999999999999998765321 12 123444432 232222
Q ss_pred HHH--Hhh-------ccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEE
Q 046969 135 ITY--SAH-------LRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLLF 203 (697)
Q Consensus 135 l~~--~~~-------l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~lll 203 (697)
..- +.. ++. ...+.++. +++.+.++.++..+.. +-+ ..++|.+|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPEDW-GKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHHH-HHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 211 101 111 12333332 3455555555433221 111 2368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHhC-CCEEEEEeC---------C--Cc-------HHHHHhccceeeecC
Q 046969 204 LDEPSSGLDS--------ASAFFVIQTLRNIARD-GRTVISSIH---------Q--PS-------SEVFALFDDLFLLSG 256 (697)
Q Consensus 204 LDEPtsgLD~--------~~a~~i~~~L~~la~~-g~tvi~~~H---------q--p~-------~~i~~l~D~v~lL~~ 256 (697)
+|+++...++ .....+.+.|+.+|++ |.+||+++| + |. ..+...+|.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999987743 2346788888988865 999999999 2 42 146778999999987
Q ss_pred Cee
Q 046969 257 GET 259 (697)
Q Consensus 257 G~i 259 (697)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.85 E-value=8.8e-10 Score=116.55 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=79.3
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhh
Q 046969 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAH 140 (697)
Q Consensus 61 vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 140 (697)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + . ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHHH-------
Confidence 45556799999999999999999999999998653 466766554321 0 0 0011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046969 141 LRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL---SIALEILTKPQLLFLDEPSSGLDSASAF 217 (697)
Q Consensus 141 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv---sIa~~Ll~~P~lllLDEPtsgLD~~~a~ 217 (697)
.+..+.+.+|+.. ....|||+.+++ +|++++..+|+++++|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223344556532 124689999999 89999999999999999974 44555
Q ss_pred HHHHHHHHHHh
Q 046969 218 FVIQTLRNIAR 228 (697)
Q Consensus 218 ~i~~~L~~la~ 228 (697)
.+++.|+++.+
T Consensus 203 ~l~~eL~~l~~ 213 (306)
T 1vma_A 203 NLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.85 E-value=4.7e-09 Score=110.54 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=90.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS 145 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~ 145 (697)
++|++++++||||+||||+++.|++.+.+. +| +.+.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 579999999999999999999999987642 34 24667777652 3356666554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046969 146 SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRN 225 (697)
Q Consensus 146 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~ 225 (697)
..|+... . ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.+..+-
T Consensus 159 ----------------~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 1232211 0 1122 22344555 45999999999 999998766555444333
Q ss_pred HH---hCCCEEEE-EeCCCcHHHHHhccceeeecCCeeeee
Q 046969 226 IA---RDGRTVIS-SIHQPSSEVFALFDDLFLLSGGETVYF 262 (697)
Q Consensus 226 la---~~g~tvi~-~~Hqp~~~i~~l~D~v~lL~~G~iv~~ 262 (697)
+. ..+.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 47875 578888898887777777764
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.79 E-value=9e-11 Score=135.49 Aligned_cols=160 Identities=15% Similarity=0.154 Sum_probs=101.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCC---------
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENV--------- 124 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~--------- 124 (697)
...++++++..+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 467899999999999999999999999999999999998764 248899988776544567889887531
Q ss_pred -------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHH
Q 046969 125 -------------LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSI 191 (697)
Q Consensus 125 -------------l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI 191 (697)
.+..+++.+|+.....-..+...- .+..... -+.+|.-+.... ...++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~---~~L~G~~~~~~~-----~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHA---GALLGDVRHDPF-----QSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCH---HHHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCH---HhcCceEEechh-----hcCCccccccccccC
Confidence 111222222211000000000000 0000000 111221111111 114799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046969 192 ALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRN 225 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~ 225 (697)
+.....++.+||+||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 898888888777764
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.79 E-value=7.2e-09 Score=109.04 Aligned_cols=119 Identities=16% Similarity=0.050 Sum_probs=82.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHH
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYS 138 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 138 (697)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 99999999999999999999999998652 57777766543210 000 100
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 046969 139 AHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP-SSGLDSASAF 217 (697)
Q Consensus 139 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP-tsgLD~~~a~ 217 (697)
..+.+..|+..... + .+-...+.+|.+|+.+...+++++++||| ++|+|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 01123345543211 0 12344566789999988899999999999 9999998888
Q ss_pred HHHHHHHHHH
Q 046969 218 FVIQTLRNIA 227 (697)
Q Consensus 218 ~i~~~L~~la 227 (697)
.+.+..+.+.
T Consensus 201 ~l~~~~~~~~ 210 (295)
T 1ls1_A 201 ELARLKEVLG 210 (295)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhhhcC
Confidence 8877776653
No 156
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.78 E-value=2.1e-10 Score=121.39 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=67.6
Q ss_pred ceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEE---CCEecCc
Q 046969 56 RLLQGLYGYA-------------------EPGRIMAIMGPSGSGKSTLLDSLAGRLS--RHVIMTGNVLF---NGKKTRV 111 (697)
Q Consensus 56 ~iL~~vs~~i-------------------~~Gei~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~---nG~~~~~ 111 (697)
++++++++.+ ++|+++||+||||||||||+++|+|++. +. +|+|.+ ||.....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~ 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH
Confidence 5788888877 8999999999999999999999999876 53 899999 8865421
Q ss_pred -CCCeEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 046969 112 -DSGVLAYVTQENVLLGTLTVRETITYSAHLR 142 (697)
Q Consensus 112 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 142 (697)
..+.++++ |+..+++.+|+.+++.+...++
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 12346778 8777888899999998876654
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.77 E-value=2.2e-10 Score=128.82 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=97.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCC--CHHHHH
Q 046969 60 GLYGYAEPGRIMAIMGPSGSGKSTLLDSLAG--RLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTL--TVRETI 135 (697)
Q Consensus 60 ~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~l 135 (697)
.+++.+.+|.-++|.|++||||||+|++|.. +.... .|++.+.+.+.+.. . .+....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 4677888899999999999999999999875 22221 36666555443210 0 0100011111 111222
Q ss_pred HHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCcccCc--cccCccCCCCCHHHHHHH----------HHHHHHhhCCC-E
Q 046969 136 TYSAH-LRLPSSMSKEDIKSHVDGTILELGLHDCADT--VIGNWHLRGISGGEKKRL----------SIALEILTKPQ-L 201 (697)
Q Consensus 136 ~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~--~vg~~~~~~LSGGerqRv----------sIa~~Ll~~P~-l 201 (697)
..+.. ++ ...++.+++. +++...|+.+..+. .+. ..+||||+||. .+++++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 11111 11 1134555554 67788888764332 111 24788887652 34556677898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCCc
Q 046969 202 LFLDEPSSGLDSASAFFVIQTLRNIAR---D-GRTVISSIHQPS 241 (697)
Q Consensus 202 llLDEPtsgLD~~~a~~i~~~L~~la~---~-g~tvi~~~Hqp~ 241 (697)
+++||++.-+|.. ...+.+.|.++++ . |.++|+++|+|+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988843 3556666666654 2 779999999997
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.75 E-value=2.3e-09 Score=119.71 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=47.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 109 (697)
..+|+++|+.+++ |+++|+|||||||||||++|+|+++++ +|+|.++|+++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4579999999999 999999999999999999999999875 89999999875
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.75 E-value=7e-09 Score=111.69 Aligned_cols=154 Identities=23% Similarity=0.308 Sum_probs=91.6
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 57 LLQGLY--GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 57 iL~~vs--~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-|+.+- +-+++|+++.|.||||+|||||+..++..... .| ..+.|+.-+..+- +.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~----~g-------------~~vlyi~~E~~~~------~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA----AG-------------GIAAFIDAEHALD------PE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TT-------------CCEEEEESSCCCC------HH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----CC-------------CeEEEEECCCCcC------HH
Confidence 344443 47899999999999999999998887754321 11 2345665543211 00
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC-
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTK--PQLLFLDEPSSGL- 211 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~--P~lllLDEPtsgL- 211 (697)
++. .+|+.. .+-.+- ...+.. +-+.++++++.+ |+++++||+++.+
T Consensus 105 --~a~----------------------~lG~~~-~~l~i~----~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YAK----------------------KLGVDT-DSLLVS----QPDTGE--QALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HHH----------------------HTTCCG-GGCEEE----CCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HHH----------------------HcCCCH-HHeEEe----cCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 111 122210 000111 112332 345678888755 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH---H-hCCCEEEEEeCCCcH---------------HHHHhccceeeecCCeee
Q 046969 212 ---------DS---ASAFFVIQTLRNI---A-RDGRTVISSIHQPSS---------------EVFALFDDLFLLSGGETV 260 (697)
Q Consensus 212 ---------D~---~~a~~i~~~L~~l---a-~~g~tvi~~~Hqp~~---------------~i~~l~D~v~lL~~G~iv 260 (697)
|+ ..+..+.+.++++ + +.|.|||++.|.... .+...+|.++.+..++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2333455555555 3 359999999996431 255789999988877765
Q ss_pred eecC
Q 046969 261 YFGE 264 (697)
Q Consensus 261 ~~G~ 264 (697)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5554
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.70 E-value=6.1e-12 Score=130.85 Aligned_cols=122 Identities=13% Similarity=0.206 Sum_probs=82.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CCCeEEEEecCCC-CCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----DSGVLAYVTQENV-LLGT 128 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~-l~~~ 128 (697)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45789999999999 89999999999999999999864 5889998865321 1123567777643 5566
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 046969 129 LTVRETITYSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQL 201 (697)
Q Consensus 129 lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~l 201 (697)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77777775432211100 001122233333332 24899999999999999999876
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.68 E-value=9.2e-10 Score=108.26 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=45.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----cCCCeEEEEecCCCCCCCCCHHHHH
Q 046969 62 YGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-----VDSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 62 s~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-----~~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
|+.+++|++++|+||||||||||+++|+|..+ .+.+++.... .....++|++|++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 46678999999999999999999999999864 3455554421 1124578999987666655554443
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.68 E-value=1.5e-08 Score=98.84 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046969 186 KKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226 (697)
Q Consensus 186 rqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~l 226 (697)
.+++.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999988763
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.65 E-value=1.1e-11 Score=126.96 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=81.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CCCeEEEEecCC-CCCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV-----DSGVLAYVTQEN-VLLGT 128 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~-~l~~~ 128 (697)
..+++++++.+++| ++|.||||+|||||+++|++... .|.|.++|.+... ..+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 45789999999999 89999999999999999999864 5889998865321 112355667764 34566
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 046969 129 LTVRETITYSAHLRLPS-SMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQL 201 (697)
Q Consensus 129 lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~l 201 (697)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 67777774332211100 001122233333333 24889999999999999999976
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.44 E-value=1.5e-07 Score=101.87 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=88.7
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHH---HH
Q 046969 67 PGRI-MAIMGPSGSGKSTLLDSLAGRLSRH--------VIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVR---ET 134 (697)
Q Consensus 67 ~Gei-~aI~GpsGsGKSTLL~~LaG~~~~~--------~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~---E~ 134 (697)
.|-. ++|+|++|||||||+|.|+|..... ...+|.|.++|.+.... ...|++.|.+ ...|. .+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-DT~G~i~~lp----~~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVGFIRGIP----PQIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-ECCCBCSSCC----GGGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-eCCCchhcCC----HHHHHHHHHH
Confidence 3444 9999999999999999999975410 03478999998654211 2234444322 11121 12
Q ss_pred HHHHhh--c--c-CCCCCCH---HHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHH----HHH-hhCCCE
Q 046969 135 ITYSAH--L--R-LPSSMSK---EDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIA----LEI-LTKPQL 201 (697)
Q Consensus 135 l~~~~~--l--~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa----~~L-l~~P~l 201 (697)
+..... + . ....... .+..+.+.++++.+++.+..--.|+| +..-+|+|+++|+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 211110 0 0 0001111 22334567788888876544222333 2345788889988887 444 334444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046969 202 LFLDEPSSGLDSASAFFVIQTLRNIAR 228 (697)
Q Consensus 202 llLDEPtsgLD~~~a~~i~~~L~~la~ 228 (697)
+|+|++|......+.+.|.++..
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988664
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.37 E-value=8.7e-08 Score=103.18 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=30.9
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 57 LLQGLY--GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 57 iL~~vs--~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
-|+.+- |=+++|+++.|.||||||||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355543 4689999999999999999999999998654
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.36 E-value=3.1e-07 Score=102.65 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCCc
Q 046969 183 GGEKKRLSIALEILTKPQLLFLDEP----------SSGLDSASAFFVIQTLRNIA----RDGRTVISSIHQPS 241 (697)
Q Consensus 183 GGerqRvsIa~~Ll~~P~lllLDEP----------tsgLD~~~a~~i~~~L~~la----~~g~tvi~~~Hqp~ 241 (697)
|++++|..++.+....|.+||+||+ +.|.|......+.+.|..+- ..+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788888899999999999999999 44777777777777777664 24789999999973
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.36 E-value=4.9e-07 Score=88.36 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046969 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA 227 (697)
Q Consensus 189 vsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la 227 (697)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.33 E-value=1.5e-08 Score=99.94 Aligned_cols=46 Identities=30% Similarity=0.371 Sum_probs=32.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 109 (697)
+..+.....++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 333334566799999999999999999999999874 7788887654
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.32 E-value=1.7e-08 Score=102.18 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=40.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-c------------CCCeEEEEecC
Q 046969 62 YGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR-V------------DSGVLAYVTQE 122 (697)
Q Consensus 62 s~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~-~------------~~~~i~yv~Q~ 122 (697)
++.+++ ++++|+|||||||||||++|+|.+.+. +|+|.++|.+.. . .+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999875 899999997651 0 13458888884
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.30 E-value=6.8e-07 Score=105.85 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCCcHHHHHhccceeee
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSS-GLDSASAFFVIQTLRNIARDGRTVISS-IHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLDEPts-gLD~~~a~~i~~~L~~la~~g~tvi~~-~Hqp~~~i~~l~D~v~lL 254 (697)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|++| ||++ ..+.+++++.-++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCcc
Confidence 4579999999999999999999999999996 999887777777776655456788885 8875 5677788764444
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.29 E-value=3.1e-07 Score=98.18 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=85.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-.-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~q- 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQ- 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHH-
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHH-
Confidence 3457777778999999999999999999999888754321 11 23445442 233333
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA 214 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~ 214 (697)
...++......+.+.+..+ ..||++|.+|+..|...+.++++++.|+|...
T Consensus 89 -----------------l~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 89 -----------------LALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp -----------------HHHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred -----------------HHHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2222222222222222211 25999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHhC--CCEEEEEe
Q 046969 215 SAFFVIQTLRNIARD--GRTVISSI 237 (697)
Q Consensus 215 ~a~~i~~~L~~la~~--g~tvi~~~ 237 (697)
..+|...+++++++ |..+|++-
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 34677777777654 57777763
No 172
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.18 E-value=1.8e-06 Score=92.94 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCCc
Q 046969 179 RGISGGEKKRLSIALEILTKPQLLFLD-EPSSGLDSASAFFVIQTLRNIARDGRTVISSI--HQPS 241 (697)
Q Consensus 179 ~~LSGGerqRvsIa~~Ll~~P~lllLD-EPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~--Hqp~ 241 (697)
..+|+||+|++. +.+...++-++++| +|..|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998886 55556788889999 99999999998888888877654 67788887 7753
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.11 E-value=3.2e-06 Score=93.65 Aligned_cols=96 Identities=10% Similarity=0.124 Sum_probs=63.8
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccceee-ecCCeeeeecChhh--HHHHH
Q 046969 197 TKPQLLFLDEPSSGLDS-ASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFL-LSGGETVYFGEAKL--AVEFF 272 (697)
Q Consensus 197 ~~P~lllLDEPtsgLD~-~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~v~l-L~~G~iv~~G~~~~--~~~~f 272 (697)
.+|++||+||+..-.+. .++..+.+.+..+.+.|+.||+++|.|..++..+.+++.- +..|.++..++++. ..+.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887764 6778889999988888999999999975443334455444 56788887777643 22332
Q ss_pred ----HhcCCCCCCCCCchhhHHHHhc
Q 046969 273 ----AEAGFPCPSRRNPSDHFLRCVN 294 (697)
Q Consensus 273 ----~~~g~~~p~~~npad~~l~~~~ 294 (697)
...|...++ +..+++.+...
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 334554433 23455544443
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=2.3e-07 Score=95.25 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=36.2
Q ss_pred eEEEEEE-EEEeccccccccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 35 FLVWENL-FAVLPNFGNNKPTKRLLQGLYGYAEP---GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 35 ~l~~~~l-~~~~~~~~~~~~~~~iL~~vs~~i~~---Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++++|| ++.+. ..+++|+|+|+.+++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 87762 246799999999999 9999999999999999999999865
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=1e-05 Score=86.72 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=35.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCC
Q 046969 197 TKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR---DGRTVISSIHQP 240 (697)
Q Consensus 197 ~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~---~g~tvi~~~Hqp 240 (697)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 578999999997
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.02 E-value=1.1e-06 Score=85.41 Aligned_cols=27 Identities=48% Similarity=0.716 Sum_probs=24.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.00 E-value=4.4e-06 Score=80.33 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=32.3
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999 9999999999999999999987654
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.00 E-value=2.3e-08 Score=112.34 Aligned_cols=127 Identities=14% Similarity=0.213 Sum_probs=78.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----CCeEEEEecCCC-CCCC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-----SGVLAYVTQENV-LLGT 128 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~i~yv~Q~~~-l~~~ 128 (697)
..+++++++.+++| ++|.||||+|||||+++|++... .|.|.++|.+.... .+.+..++|+.. ..+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 35788999999999 89999999999999999999864 57888888654210 112334454432 2333
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 046969 129 LTVRETITYSAHLRLP-SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207 (697)
Q Consensus 129 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP 207 (697)
+.+.+++.....-+.. .....++..+.+.+++. .+||||+|+..|+++...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 3444444221111100 00112333444444443 3678888888888888888877 6776
Q ss_pred C
Q 046969 208 S 208 (697)
Q Consensus 208 t 208 (697)
.
T Consensus 186 L 186 (499)
T 2dhr_A 186 L 186 (499)
T ss_dssp T
T ss_pred c
Confidence 5
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.99 E-value=9.3e-07 Score=93.94 Aligned_cols=76 Identities=18% Similarity=0.105 Sum_probs=54.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------C-----CCeEEEE-ecC
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---------D-----SGVLAYV-TQE 122 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---------~-----~~~i~yv-~Q~ 122 (697)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... . +..+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 36899999999999999999999999999999988653 6888887765421 0 3457788 665
Q ss_pred CCCCCCCCHHHHHH
Q 046969 123 NVLLGTLTVRETIT 136 (697)
Q Consensus 123 ~~l~~~lTV~E~l~ 136 (697)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444333444433
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=4.1e-05 Score=79.49 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCCEEEEEeCCCc---HHH
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSAS----------AFFVIQTLRNIAR----DGRTVISSIHQPS---SEV 244 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~----------a~~i~~~L~~la~----~g~tvi~~~Hqp~---~~i 244 (697)
+++++.|..++.+...+|.+||+||+.+-++... ...++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4567777778888888999999999987765422 2233444443321 2356788888763 334
Q ss_pred HHhccceeee
Q 046969 245 FALFDDLFLL 254 (697)
Q Consensus 245 ~~l~D~v~lL 254 (697)
.+-||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4455554443
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.95 E-value=6.8e-06 Score=86.95 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=84.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-.-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.=+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 3457888777999999999999999999999888743211 11 234555432 344332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSA 214 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~ 214 (697)
. .++......+.+.+..+ |. ..||++|++|+..|...+.++++++.|+|...
T Consensus 112 ~------------------~R~~~~~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 I------------------KRLIVTAGSINAQKIKA---AR---RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp H------------------HHHHHHHTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred H------------------HHHHHHHcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 2 22221111122211111 10 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEeC
Q 046969 215 SAFFVIQTLRNIARD-GRT--VISSIH 238 (697)
Q Consensus 215 ~a~~i~~~L~~la~~-g~t--vi~~~H 238 (697)
..++...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 45577777777664 666 777654
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.95 E-value=3.5e-07 Score=90.00 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=41.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEec
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV--LFNGKKT 109 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I--~~nG~~~ 109 (697)
....+..+...++|++++|+||||||||||+++|++++.. .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 3455666777789999999999999999999999998752 5766 7777654
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=2.4e-06 Score=82.60 Aligned_cols=38 Identities=11% Similarity=0.310 Sum_probs=30.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN 105 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n 105 (697)
.+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 379999999999999999999999987532 35665543
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.94 E-value=2.9e-05 Score=83.50 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Q 046969 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDG-RTVISSIH 238 (697)
Q Consensus 181 LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g-~tvi~~~H 238 (697)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334455443 45566677766555 56666554
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=3.7e-06 Score=82.53 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=24.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 53 PTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 53 ~~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+....++|||+.+++|++++|+||+||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999999865
No 186
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.93 E-value=4.5e-06 Score=81.61 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=27.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
++++|++++|+||||||||||+++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999854
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.90 E-value=2e-07 Score=98.96 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=72.4
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCC
Q 046969 54 TKRLLQGLYGYAEPGR------IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLG 127 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Ge------i~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~ 127 (697)
.++.|++++..+..++ ++||+||||||||||+++|++++... ... ..++.+.+|+...+
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~--------------~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDH--------------PNVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTC--------------CCEEEEEGGGGBCC
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCC--------------CeEEEEeecccccc
Confidence 4567777777777766 99999999999999999999987531 001 23667778776654
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 046969 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207 (697)
Q Consensus 128 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEP 207 (697)
... .+......+...|.....+... +.++.+.-.. +. + ..-.+|.+..+|+..+...+..|+++|+|.+
T Consensus 137 ~~~-l~~~~~~~~~g~P~~~D~~~l~----~~L~~L~~g~--~~-v---~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi 205 (321)
T 3tqc_A 137 NAK-LEKQGLMKRKGFPESYDMPSLL----RVLNAIKSGQ--RN-V---RIPVYSHHYYDIVRGQYEIVDQPDIVILEGL 205 (321)
T ss_dssp HHH-HHHTTCGGGTTSGGGBCHHHHH----HHHHHHHTTC--SS-E---EEEEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred hhh-hhhHHHHhhccCcccccHHHHH----HHHHhhhccc--cc-c---ccchhhhhccccccCceeeccCCCEEEEEcc
Confidence 321 1211000111112222333222 2333321111 00 0 0012333333443322334568999999998
Q ss_pred CCCCCH
Q 046969 208 SSGLDS 213 (697)
Q Consensus 208 tsgLD~ 213 (697)
....|.
T Consensus 206 ~lL~~~ 211 (321)
T 3tqc_A 206 NILQTG 211 (321)
T ss_dssp TTTCCC
T ss_pred cccccc
Confidence 876653
No 188
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.82 E-value=2.1e-05 Score=82.66 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=85.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSM 147 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 147 (697)
+..++|+|++|+|||||+|.|.|.... + ..+.+.....+..+++.+++..+ ++ ...|. .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~-------i-~s~~~~tTr~~~~gi~~~~~~~i---~~---------iDTpG-~ 66 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS-------I-TSRKAQTTRHRIVGIHTEGAYQA---IY---------VDTPG-L 66 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE-------E-CCCCSSCCSSCEEEEEEETTEEE---EE---------ESSSS-C
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc-------c-cCCCCCcceeeEEEEEEECCeeE---EE---------EECcC-C
Confidence 348999999999999999999986311 0 11122112234567777764311 00 00111 1
Q ss_pred CHHHHHHHHHHHHHH---cCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHH
Q 046969 148 SKEDIKSHVDGTILE---LGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLLFLDEPSSGLDSAS-AFFVIQ 221 (697)
Q Consensus 148 ~~~~~~~~v~~~l~~---lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~lllLDEPtsgLD~~~-a~~i~~ 221 (697)
..+. .....+.+.. -.+. .+|-.+=-.....+|+|++ .++..+. ..|.++++ +.+|... ...+.+
T Consensus 67 ~~~~-~~~l~~~~~~~~~~~l~-~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 67 HMEE-KRAINRLMNKAASSSIG-DVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp CHHH-HHHHHHHHTCCTTSCCC-CEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred Cccc-hhhHHHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 1000 0011111100 0111 1121110000123899886 5566666 68999999 7999877 667888
Q ss_pred HHHHHHhC-CC--EEEEEeCCCcHHHHHhccceee
Q 046969 222 TLRNIARD-GR--TVISSIHQPSSEVFALFDDLFL 253 (697)
Q Consensus 222 ~L~~la~~-g~--tvi~~~Hqp~~~i~~l~D~v~l 253 (697)
.++++++. |. .+.++.|+- ..+.+++|.+.-
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~~ 171 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETG-LNVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHHT
T ss_pred HHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHHH
Confidence 88888764 43 666777774 467778887764
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.81 E-value=1.5e-06 Score=85.49 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHH-HHHhccceeeec
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSE-VFALFDDLFLLS 255 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~-i~~l~D~v~lL~ 255 (697)
+.|+.+|..++..+..+|+.+..+ .+.+++.....+.+.++.. .+.++|+.+|...+. ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678889999998888887654332 2344555444444433321 356888888875321 246678777774
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.81 E-value=4.9e-06 Score=83.76 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT 109 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 109 (697)
+..++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 34579999999999999999999999997 37788887653
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.79 E-value=0.00013 Score=77.93 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=81.5
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 58 LQGLY-GYAEPGRIMAIMGPSGSGKSTLLDSLAGR--LSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 58 L~~vs-~~i~~Gei~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .+.. .| |. ...+.|+.-+..+ ...+-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~---~g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA---GG-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT---TT-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc---cC-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 56899999999999999999999988874 2211 00 10 1345666655432 23322
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHH-HHHHHHHHHHh----hCCCEEEEeCCCC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGE-KKRLSIALEIL----TKPQLLFLDEPSS 209 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~~Ll----~~P~lllLDEPts 209 (697)
.....++. ...+ ++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++
T Consensus 174 ~~~~~~~g----~~~~-------~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 174 RDIADRFN----VDHD-------AVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHTT----CCHH-------HHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHcC----CCHH-------HHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22222221 1111 122221111 1123332 24455566666 5699999999998
Q ss_pred CCCHH------------HHHHHHHHHHHHHhC-CCEEEEEeCCC
Q 046969 210 GLDSA------------SAFFVIQTLRNIARD-GRTVISSIHQP 240 (697)
Q Consensus 210 gLD~~------------~a~~i~~~L~~la~~-g~tvi~~~Hqp 240 (697)
-.+.. ...++++.|++++++ |.+||++.|-.
T Consensus 231 l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 231 LFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 65432 134566667777764 88988888764
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.78 E-value=2.2e-06 Score=87.71 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=43.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEecCc------CCCeEEE
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA---GRLSRHVIMTGNVL--------FNGKKTRV------DSGVLAY 118 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~I~--------~nG~~~~~------~~~~i~y 118 (697)
.++++.+ ++|++++|+|||||||||++++|+ |...+ .+|.|. .+|.+... ..+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3444443 789999999999999999999999 87655 489888 78876521 1234677
Q ss_pred EecCC
Q 046969 119 VTQEN 123 (697)
Q Consensus 119 v~Q~~ 123 (697)
++|++
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 77643
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.74 E-value=1.4e-05 Score=79.03 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=27.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999865
No 194
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.69 E-value=2.1e-05 Score=77.28 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=36.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGT 128 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~ 128 (697)
.+++|++++|+|+||||||||.+.|++.++ .+.+++||+.+++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP---------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST---------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC---------------------CcEEEeCCccccCH
Confidence 567899999999999999999999998753 25678888776653
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.65 E-value=0.00019 Score=75.98 Aligned_cols=144 Identities=21% Similarity=0.267 Sum_probs=81.7
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHH
Q 046969 58 LQGLY-GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETIT 136 (697)
Q Consensus 58 L~~vs-~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 136 (697)
|+.+- +-+++|+++.|.||+|+|||||+..++....... ..| |. ...+.|+.-+..+ ...+-..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~-~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~ 160 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP-EKG-----GL-----SGKAVYIDTEGTF----RWERIEN 160 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGT-----CC-----SCEEEEEESSSCC----CHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc-ccC-----CC-----CCeEEEEECCCCC----CHHHHHH
Confidence 44433 5789999999999999999999988886432100 011 10 1345666554432 2222222
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCC
Q 046969 137 YSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG-EKKRLSIALEIL---TKPQLLFLDEPSSGLD 212 (697)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG-erqRvsIa~~Ll---~~P~lllLDEPtsgLD 212 (697)
...++. ...++ +++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-.+
T Consensus 161 ~~~~~g----~~~~~-------~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 161 MAKALG----LDIDN-------VMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHTT----CCHHH-------HHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHhC----CCHHH-------HhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 222221 11111 12111 111 123333 335677778888 5799999999987543
Q ss_pred H--------H----HHHHHHHHHHHHHhC-CCEEEEEeCC
Q 046969 213 S--------A----SAFFVIQTLRNIARD-GRTVISSIHQ 239 (697)
Q Consensus 213 ~--------~----~a~~i~~~L~~la~~-g~tvi~~~Hq 239 (697)
. . ...++++.|++++++ |.+||++.|-
T Consensus 218 ~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 218 AEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 2 1 124566667777764 8899988775
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.65 E-value=1.6e-05 Score=92.66 Aligned_cols=129 Identities=19% Similarity=0.106 Sum_probs=72.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----CCeEEEEecCCCCCCCCCHHHHHH
Q 046969 62 YGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVD-----SGVLAYVTQENVLLGTLTVRETIT 136 (697)
Q Consensus 62 s~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~ 136 (697)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|...... .+.+++..|...+... +++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~--- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV--- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE---
Confidence 3457789999999999999999999999764321 235766 455433110 1223333333222111 1000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046969 137 YSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASA 216 (697)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~~~a 216 (697)
...||. |. ..++ .......-..+..++++| |+.|+|..+.
T Consensus 77 ------------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 77 ------------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp ------------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred ------------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 112221 10 0111 112222335678899999 9999998776
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 217 FFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 217 ~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
+.++.+.+.+.++|+++|..
T Consensus 117 ----~~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 117 ----RAWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp ----HHHHHHHHTTCCEEEEEECG
T ss_pred ----HHHHHHHHccCCEEEEecCC
Confidence 33344444688899999885
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.60 E-value=1.7e-05 Score=75.62 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=29.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK 108 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 108 (697)
.+|++++|+||||||||||+++|++.+ |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 469999999999999999999999863 556666543
No 198
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.59 E-value=8.4e-06 Score=88.43 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=39.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF 104 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 104 (697)
..+|+++++.+++|++++|.||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 466654
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.58 E-value=1.1e-05 Score=79.40 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=32.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~ 107 (697)
.++|++++|+|+||||||||++.|++.+++. .|+|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5789999999999999999999999987542 466655443
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=7.3e-05 Score=78.26 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=26.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788999999999999999999999865
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.51 E-value=0.00017 Score=79.52 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=69.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSS 146 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 146 (697)
++.+++++||+|+||||++..|++.+... .++|.+ +.-|.. .....|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll--------------v~~D~~---r~~a~eqL~~--------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL--------------VAADVY---RPAAYDQLLQ--------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE--------------EEECCS---CHHHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE--------------EecCcc---chhHHHHHHH---------
Confidence 68999999999999999999999887542 234433 332210 0011222221
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 046969 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPS-SG--LDSASAFFVIQTL 223 (697)
Q Consensus 147 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPt-sg--LD~~~a~~i~~~L 223 (697)
+-+..|+.-.... .+...-+-.+-+++.+...+++++++|+|- .+ .|+....++.+.+
T Consensus 147 ------------~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 147 ------------LGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp ------------HHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred ------------HHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 1222333211100 011222222334555555689999999997 35 7887777777766
Q ss_pred HHHHhCCCEEEEEeCC
Q 046969 224 RNIARDGRTVISSIHQ 239 (697)
Q Consensus 224 ~~la~~g~tvi~~~Hq 239 (697)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5554344455555554
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=1.8e-05 Score=84.50 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998754
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=4.2e-05 Score=72.59 Aligned_cols=27 Identities=41% Similarity=0.618 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999999764
No 204
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.46 E-value=4.3e-05 Score=75.42 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998865
No 205
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.46 E-value=2.7e-05 Score=78.36 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHHhccc
Q 046969 182 SGGEKKRLSIALEILTKPQLLFLDEPSS-GLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250 (697)
Q Consensus 182 SGGerqRvsIa~~Ll~~P~lllLDEPts-gLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~~i~~l~D~ 250 (697)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-+++++|.--+.+...++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456555543 33578999999999976 78877665555555544333457777755555555556654
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.44 E-value=2.4e-05 Score=88.96 Aligned_cols=42 Identities=38% Similarity=0.489 Sum_probs=35.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG-NVL-FNGKK 108 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~-~nG~~ 108 (697)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999998763 44 674 77754
No 207
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=7.8e-05 Score=71.22 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.00055 Score=69.43 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=24.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999998753
No 209
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.35 E-value=0.00011 Score=68.97 Aligned_cols=31 Identities=39% Similarity=0.492 Sum_probs=25.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
++.+..+.+| +.+|+|||||||||+|++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445556665 999999999999999999873
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.33 E-value=0.00037 Score=73.32 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=35.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 196 LTKPQLLFLDEPSS-GLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 196 l~~P~lllLDEPts-gLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
..++++||+||+.. ..|..+...+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 23447788888999888877877888877654
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.30 E-value=0.00016 Score=86.07 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=27.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+++|+-++|.||||+|||||+++|+|.+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999865
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.27 E-value=0.00025 Score=69.05 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.-+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999997653
No 213
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.24 E-value=0.0029 Score=63.39 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
-++|+|++|+|||||+|.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999754
No 214
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.22 E-value=0.00013 Score=80.40 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=28.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
+.+.+|++++|+|||||||||||++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998765
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=9.8e-05 Score=70.75 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=25.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
++|++++|+|++||||||+.+.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.12 E-value=0.00088 Score=74.06 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=80.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
.-|+.+.+-+++|+++.|.|++|+|||||...++...... . | ..+.|+.=+ ++..+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~------g-------~~vl~~slE------~~~~~-- 243 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---E------G-------VGVGIYSLE------MPAAQ-- 243 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---T------C-------CCEEEEESS------SCHHH--
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---C------C-------CeEEEEECC------CCHHH--
Confidence 4577777779999999999999999999998887643210 1 1 124454422 23222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--cccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046969 136 TYSAHLRLPSSMSKEDIKSHVDGTILELGLH--DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS 213 (697)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllLDEPtsgLD~ 213 (697)
...+... ...++. ...+ ..|+..+.+|+.-|...+.+.++++.|+|.. +
T Consensus 244 ----------------l~~R~~~--~~~~i~~~~l~~--------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s- 294 (444)
T 2q6t_A 244 ----------------LTLRMMC--SEARIDMNRVRL--------GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--T- 294 (444)
T ss_dssp ----------------HHHHHHH--HHTTCCTTTCCG--------GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--B-
T ss_pred ----------------HHHHHHH--HHcCCCHHHHhC--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--C-
Confidence 1112111 122332 2111 2599999999999999898889999887643 3
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEe
Q 046969 214 ASAFFVIQTLRNIAR-DGRTVISSI 237 (697)
Q Consensus 214 ~~a~~i~~~L~~la~-~g~tvi~~~ 237 (697)
..++...++++.+ .|..+|++-
T Consensus 295 --~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 295 --LMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp --HHHHHHHHHHHHHHSCCCEEEEE
T ss_pred --HHHHHHHHHHHHHHcCCCEEEEc
Confidence 3455666777664 466666663
No 217
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.11 E-value=0.0017 Score=66.59 Aligned_cols=28 Identities=32% Similarity=0.598 Sum_probs=24.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999865
No 218
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.09 E-value=3.7e-05 Score=82.24 Aligned_cols=50 Identities=26% Similarity=0.392 Sum_probs=40.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG 106 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 106 (697)
.+.+++++++..++|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356888999999999999999999999999999999986542 34554433
No 219
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.06 E-value=0.00057 Score=75.68 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=30.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.-|+.+.+=+++|+++.|.|++|+|||||.--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 346666666899999999999999999998777653
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.05 E-value=0.0002 Score=72.09 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=27.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 57 LLQGLYGYAE---PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 57 iL~~vs~~i~---~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
=|.++++.++ +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677777776 999999999999999999999998875
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.03 E-value=0.00072 Score=64.16 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999864
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.98 E-value=0.0012 Score=66.26 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCcHHHHHhccceeeec
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH---------QPSSEVFALFDDLFLLS 255 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~H---------qp~~~i~~l~D~v~lL~ 255 (697)
+|+++++||--. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 356667777778999999999 66788999999999985
No 223
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.97 E-value=0.00017 Score=77.41 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK 108 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 108 (697)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 468899999999999999999999976542 4666555443
No 224
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.96 E-value=0.0032 Score=67.37 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999764
No 225
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.96 E-value=8.4e-05 Score=80.21 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=41.4
Q ss_pred EEEEEEEEEeccccccccccceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 36 LVWENLFAVLPNFGNNKPTKRLLQ--------------GLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.|+||+..++ ..+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 134 i~Fe~ltp~yP------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHA------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESC------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCC------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44555555443 3466788 899999999999999999999999999999864
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.94 E-value=0.0074 Score=64.76 Aligned_cols=35 Identities=37% Similarity=0.448 Sum_probs=28.6
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 57 LLQGLY--GYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 57 iL~~vs--~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 35889999999999999999999887754
No 227
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.00078 Score=66.59 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=30.6
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEeCCC
Q 046969 197 TKPQLLFLDEPSSGL-DSASAFFVIQTLRNIARDGRT-VISSIHQP 240 (697)
Q Consensus 197 ~~P~lllLDEPtsgL-D~~~a~~i~~~L~~la~~g~t-vi~~~Hqp 240 (697)
.+|.++++||.-.-- +......+.+.+......+.. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 223367788888887776655 77777754
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.89 E-value=0.00054 Score=67.57 Aligned_cols=30 Identities=40% Similarity=0.506 Sum_probs=24.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046969 60 GLYGYAEPGRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 60 ~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
+.++.+.+| +++|.|||||||||+|++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 345556665 999999999999999999863
No 229
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00044 Score=68.45 Aligned_cols=37 Identities=35% Similarity=0.626 Sum_probs=28.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF 104 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 104 (697)
+.+++|+|||||||||+.+.|++.+.-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999875321223576665
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.87 E-value=0.00036 Score=68.44 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=26.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999998764
No 231
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.84 E-value=0.00095 Score=73.64 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=38.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEecCc-----CCCeEEEEecCCCCCCCCCHHHHH
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSR------H---VIMTGNVLFNGKKTRV-----DSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~------~---~~~~G~I~~nG~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
.++|+|+||+|||||+|.|+|.... + ...+|.+.++|++... .++..++.+|....+..+++.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7899999999999999999997530 0 1246899999986421 112233333444444444444554
Q ss_pred HH
Q 046969 136 TY 137 (697)
Q Consensus 136 ~~ 137 (697)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 232
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.80 E-value=0.01 Score=62.52 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778999999999999999999865
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.80 E-value=0.00018 Score=81.78 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=38.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG 106 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 106 (697)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4667777777 89999999999999999999999987652 67776655
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.77 E-value=0.0003 Score=69.39 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=32.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG--NVLFNGK 107 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~nG~ 107 (697)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5689999999999999999999999987532 46 6666653
No 235
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.75 E-value=0.0013 Score=63.34 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
..+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 45789999998887 5689999999999999999974
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.72 E-value=0.00062 Score=65.67 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=28.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~ 107 (697)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 578999999999999999999875432112466665543
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.66 E-value=0.00074 Score=65.08 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 60 GLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 60 ~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999975
No 238
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.63 E-value=0.0018 Score=68.86 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 239
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.62 E-value=0.0076 Score=60.98 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
-++|+|.+|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998753
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.61 E-value=0.0018 Score=69.81 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=26.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046969 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLA 89 (697)
Q Consensus 58 L~~vs~~i~~Gei~aI~GpsGsGKSTLL~~La 89 (697)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36677777775 99999999999999999986
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.57 E-value=0.008 Score=63.13 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.3
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046969 57 LLQGLY-GYAEPGRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 57 iL~~vs-~~i~~Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5789999999999999999999988775
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.55 E-value=0.00096 Score=64.99 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 046969 70 IMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG 90 (697)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 243
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.55 E-value=0.006 Score=61.41 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999754
No 244
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.51 E-value=0.00052 Score=66.74 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=31.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468899998888885 689999999999999999874
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.49 E-value=0.0016 Score=68.43 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999754
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.0037 Score=62.27 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=40.5
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHH---------HHHhccceeeec
Q 046969 196 LTKPQLLFLDEPSS----GLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSE---------VFALFDDLFLLS 255 (697)
Q Consensus 196 l~~P~lllLDEPts----gLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~---------i~~l~D~v~lL~ 255 (697)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35789999996532 12455667788888888875 99999999864321 234677777774
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.37 E-value=0.00076 Score=74.10 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=37.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 046969 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK 108 (697)
Q Consensus 59 ~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 108 (697)
+++++. +|++++++|++||||||++..|++.+.+. .|.|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999988653 5677766544
No 248
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0018 Score=62.16 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=26.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
..+|.++.|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999988653
No 249
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.33 E-value=0.0025 Score=63.97 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 046969 194 EILTKPQLLFLDEPSSG-LDSASAFFVIQTLRNIARDGRTVISSIH 238 (697)
Q Consensus 194 ~Ll~~P~lllLDEPtsg-LD~~~a~~i~~~L~~la~~g~tvi~~~H 238 (697)
++..+|+++++||+-.- .+........+.+..+...|..++.|+|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 34468999999998642 3332223333333445567889999998
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.33 E-value=0.0004 Score=74.34 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=34.1
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 046969 55 KRLLQGLYGYAEPGRI--MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei--~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..+++.++..+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578888888999998 9999999999999999999875
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.33 E-value=0.0019 Score=60.51 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.30 E-value=0.00087 Score=68.18 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=34.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK 108 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 108 (697)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 444444 5677899999999999999999999987642 445666543
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.28 E-value=0.0019 Score=61.25 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.27 E-value=0.0017 Score=63.27 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 255
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.26 E-value=0.027 Score=62.93 Aligned_cols=172 Identities=18% Similarity=0.153 Sum_probs=88.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHHH
Q 046969 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRETI 135 (697)
Q Consensus 56 ~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 135 (697)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-..... .| ..+.|+.= .++..+.+
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g-------------~~vl~~s~------E~s~~~l~ 287 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MG-------------KKVGLAML------EESVEETA 287 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SC-------------CCEEEEES------SSCHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cC-------------CcEEEEec------cCCHHHHH
Confidence 3466665568999999999999999999987766432210 11 12445542 23444443
Q ss_pred HH--HhhccCCCCCC----HHHH-HHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeC
Q 046969 136 TY--SAHLRLPSSMS----KEDI-KSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLLFLDE 206 (697)
Q Consensus 136 ~~--~~~l~~~~~~~----~~~~-~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~lllLDE 206 (697)
.= +.....+.... .... .+..+++.+.+ +.. .+-.+-+ ...+++-. +-++.++.++ .+|+++++|=
T Consensus 288 ~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~-~~l~i~~-~~~~~~~~--~i~~~i~~~~~~~~~~lvVID~ 362 (503)
T 1q57_A 288 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL-FGN-DTFHLYD-SFAEAETD--RLLAKLAYMRSGLGCDVIILDH 362 (503)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHH-HTT-TCEEEEC-CC---CHH--HHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH-hcc-CCEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCEEEEcc
Confidence 21 11122111100 0000 00111122222 110 1111111 01123333 3334445554 3699999995
Q ss_pred CCCCC-------CH-HHHHHHHHHHHHHHhC-CCEEEEEeCCCc---------------------HHHHHhccceeeec
Q 046969 207 PSSGL-------DS-ASAFFVIQTLRNIARD-GRTVISSIHQPS---------------------SEVFALFDDLFLLS 255 (697)
Q Consensus 207 PtsgL-------D~-~~a~~i~~~L~~la~~-g~tvi~~~Hqp~---------------------~~i~~l~D~v~lL~ 255 (697)
-+. + +. .....+++.|+++|++ |.+||+++|-.. ..+...+|-|+.|.
T Consensus 363 l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 363 ISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp TTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred chh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 433 2 11 2234577888888875 999999988542 23556788888885
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.0022 Score=61.24 Aligned_cols=26 Identities=35% Similarity=0.656 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999864
No 257
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.21 E-value=0.0018 Score=70.40 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=32.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECCE
Q 046969 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS-----R---HVIMTGNVLFNGK 107 (697)
Q Consensus 61 vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~-----~---~~~~~G~I~~nG~ 107 (697)
+-+.+..|..++|+|+||+|||||+|+|+|... + -....|.+.++|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 334567888999999999999999999999721 0 0123677777664
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.17 E-value=0.0025 Score=59.77 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
No 259
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.12 E-value=0.0067 Score=59.25 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCcHHHHHhccceeeec
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH---------QPSSEVFALFDDLFLLS 255 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~H---------qp~~~i~~l~D~v~lL~ 255 (697)
+.+++++||--- +|+. +++.++.+++.|..||++-+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6543 36678888888999999999 66788999999998875
No 260
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.00057 Score=72.47 Aligned_cols=41 Identities=20% Similarity=0.541 Sum_probs=36.0
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 046969 54 TKRLLQGLYGYAEPGRI--MAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei--~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45678888888999999 999999999999999999997643
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.04 E-value=0.003 Score=63.24 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=24.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35688899999999999999999999753
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.03 E-value=0.037 Score=70.07 Aligned_cols=29 Identities=38% Similarity=0.484 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 64 YAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 64 ~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999888653
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.03 E-value=0.0029 Score=60.38 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.98 E-value=0.00065 Score=71.17 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=34.8
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 046969 59 QG-LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107 (697)
Q Consensus 59 ~~-vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~ 107 (697)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 666665 9999999999999999999999987542 455555443
No 265
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.98 E-value=0.013 Score=61.83 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999999875
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.96 E-value=0.0038 Score=59.57 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+|.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999754
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.91 E-value=0.0038 Score=63.05 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.85 E-value=0.021 Score=60.22 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHc
Q 046969 63 GYAEPGRIMAIMGPSGSGKSTLL-DSLAG 90 (697)
Q Consensus 63 ~~i~~Gei~aI~GpsGsGKSTLL-~~LaG 90 (697)
|=+++| ++.|-||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457899 9999999999999995 44443
No 269
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.84 E-value=0.024 Score=60.50 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999764
No 270
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.82 E-value=0.052 Score=58.36 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=27.4
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046969 57 LLQGLY--GYAEPGRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 57 iL~~vs--~~i~~Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344443 3689999999999999999999877764
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.81 E-value=0.0045 Score=59.26 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998653
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.0045 Score=63.00 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+++|+||||||||||-+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999864
No 273
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.71 E-value=0.0031 Score=67.74 Aligned_cols=34 Identities=35% Similarity=0.345 Sum_probs=29.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 54 ~~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 456889999887 9999999999999999988643
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.69 E-value=0.005 Score=59.93 Aligned_cols=24 Identities=50% Similarity=0.739 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 468999999999999999976544
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.69 E-value=0.006 Score=59.01 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.67 E-value=0.005 Score=63.94 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=28.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG 106 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 106 (697)
..|.++.|.|||||||||+.+.|+..++ .|-+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 4578999999999999999999987653 24455654
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.66 E-value=0.0055 Score=57.10 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 046969 70 IMAIMGPSGSGKSTLLDSL 88 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~L 88 (697)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.66 E-value=0.0058 Score=58.28 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 279
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0059 Score=60.07 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.60 E-value=0.0054 Score=58.35 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.007 Score=58.70 Aligned_cols=27 Identities=33% Similarity=0.467 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.59 E-value=0.0062 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
No 283
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.57 E-value=0.04 Score=55.32 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=44.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC---------CcHHHHHhccceeeec
Q 046969 197 TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQ---------PSSEVFALFDDLFLLS 255 (697)
Q Consensus 197 ~~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hq---------p~~~i~~l~D~v~lL~ 255 (697)
.+.+++++||----.| +.+.++.+++.|+.||++-++ ++.++.+++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877643 666666667789999999999 8889999999999885
No 284
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.075 Score=57.74 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+|-.=+.+-||+|+|||+|.+++|+...
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 3444477999999999999999998643
No 285
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.49 E-value=0.036 Score=55.00 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=44.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCcHHHHHhccceeeec
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH---------QPSSEVFALFDDLFLLS 255 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~H---------qp~~~i~~l~D~v~lL~ 255 (697)
+.+++++||--- +|.. +++.+++++..|+.||++-+ .++.++.+++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6543 33777888888999999999 78889999999999886
No 286
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.47 E-value=0.0054 Score=58.80 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998754
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.45 E-value=0.008 Score=56.67 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG 90 (697)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 288
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.44 E-value=0.074 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999764
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.41 E-value=0.0076 Score=58.62 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 290
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.40 E-value=0.0036 Score=61.12 Aligned_cols=24 Identities=42% Similarity=0.782 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.36 E-value=0.0085 Score=57.77 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 292
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.077 Score=58.34 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=44.3
Q ss_pred HHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCCcHHHHHhccceeeecCC
Q 046969 192 ALEILTKPQLLFLDEPSS----------GLDSASAFFVIQTLRNIAR----DGRTVISSIHQPSSEVFALFDDLFLLSGG 257 (697)
Q Consensus 192 a~~Ll~~P~lllLDEPts----------gLD~~~a~~i~~~L~~la~----~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G 257 (697)
..|--..|.|+|+||--+ +-|......+.+.|..+-. .+..||++|.+|. ..|.-+ +..|
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~-----~LDpAl-lRpG 341 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD-----TLDPAL-LRPG 341 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT-----SSCTTT-TSTT
T ss_pred HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch-----hhCHHH-hCCC
Confidence 344456899999999853 2244445556666666642 3578999999984 245543 4556
Q ss_pred e---eeeecChhh
Q 046969 258 E---TVYFGEAKL 267 (697)
Q Consensus 258 ~---iv~~G~~~~ 267 (697)
+ .++.+.|+.
T Consensus 342 RfD~~I~i~lPd~ 354 (437)
T 4b4t_L 342 RLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEECCCCCCH
T ss_pred ccceeeecCCcCH
Confidence 4 467776653
No 293
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.33 E-value=0.0081 Score=56.90 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999764
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.33 E-value=0.008 Score=57.61 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998653
No 295
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.31 E-value=0.0072 Score=61.88 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHHhccceeee
Q 046969 207 PSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQPSSEVFALFDDLFLL 254 (697)
Q Consensus 207 PtsgLD~~~a~~i~~~L~~la~~-g~tvi~~~Hqp~~~i~~l~D~v~lL 254 (697)
|||+++.....++.+.+.+...+ +.+..+..|.. .++.+.+|++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHHH
Confidence 78888888888888888777654 34444555654 4566666665433
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.25 E-value=0.009 Score=58.17 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999654
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.21 E-value=0.0091 Score=56.87 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997653
No 298
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.087 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.655 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++-.=+.+-||+|+|||+|.++||+..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455558899999999999999999864
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.18 E-value=0.011 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999854
No 300
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.071 Score=58.85 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=24.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+++-.=+.+-||+|+|||+|.++||+...
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 44556678999999999999999998643
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.0096 Score=56.72 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 302
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.12 E-value=0.018 Score=64.30 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3555668999999999999999998754
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.07 E-value=0.01 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 304
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.067 Score=58.77 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++-.=+.+-||+|+|||+|.+++|+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4455567899999999999999999864
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.03 E-value=0.012 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.012 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999975
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.97 E-value=0.012 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 308
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.96 E-value=0.0097 Score=57.17 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998753
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.95 E-value=0.01 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998764
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.95 E-value=0.012 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 311
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.94 E-value=0.019 Score=60.33 Aligned_cols=36 Identities=33% Similarity=0.293 Sum_probs=31.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
...+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45788877777 8999999999999999999999875
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.94 E-value=0.012 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 313
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.93 E-value=0.13 Score=66.12 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=87.3
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 57 LLQGLYG--YAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 57 iL~~vs~--~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-|+.+-+ =+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~--- 426 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---I--- 426 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---H---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---H---
Confidence 4555543 5899999999999999999998777653321 11 12445544332211 0
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLLFLDEPSSGLD 212 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~lllLDEPtsgLD 212 (697)
++.+ +|+.. .+-.+- ...+.. +-+.+++.++ .+|+++++|.-++=..
T Consensus 427 --~a~~----------------------lGvd~-~~L~I~----~~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 427 --YARK----------------------LGVDI-DNLLCS----QPDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp --HHHH----------------------TTCCT-TTCEEE----CCSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred --HHHH----------------------cCCCH-HHeEEe----CCCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 0111 12110 000111 112332 3345666665 4799999999876542
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCc---------------HHHHHhccceeeecCCeee
Q 046969 213 -S------------ASAFFVIQTLRNI---AR-DGRTVISSIHQPS---------------SEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 213 -~------------~~a~~i~~~L~~l---a~-~g~tvi~~~Hqp~---------------~~i~~l~D~v~lL~~G~iv 260 (697)
+ ..+..+.+.|++| ++ .|.+||++.|--. ..+...+|-++.|......
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~ 555 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 555 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccc
Confidence 1 1234456666666 44 5899999887421 1356788999998765443
Q ss_pred eec
Q 046969 261 YFG 263 (697)
Q Consensus 261 ~~G 263 (697)
..|
T Consensus 556 ~~g 558 (2050)
T 3cmu_A 556 KEG 558 (2050)
T ss_dssp EET
T ss_pred cCC
Confidence 333
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.91 E-value=0.011 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998764
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.88 E-value=0.013 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 316
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.87 E-value=0.013 Score=56.67 Aligned_cols=23 Identities=48% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999864
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.85 E-value=0.014 Score=55.90 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999765
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.85 E-value=0.013 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999875
No 319
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.85 E-value=0.015 Score=57.23 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.84 E-value=0.013 Score=54.15 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999763
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.83 E-value=0.012 Score=54.83 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.81 E-value=0.013 Score=53.92 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 323
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.77 E-value=0.013 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999764
No 324
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.77 E-value=0.014 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.77 E-value=0.014 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 326
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.75 E-value=0.014 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 327
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.74 E-value=0.034 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999877654
No 328
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.72 E-value=0.015 Score=59.99 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 329
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.71 E-value=0.041 Score=50.51 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
+..++++||.- .|+...+..+.+.+.+-...+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999965 5778888888888777543456677777665
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.71 E-value=0.011 Score=55.92 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 331
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.69 E-value=0.019 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998753
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.68 E-value=0.013 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.68 E-value=0.015 Score=57.52 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999654
No 334
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.66 E-value=0.013 Score=55.68 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.64 E-value=0.014 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999986
No 336
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.62 E-value=0.024 Score=60.89 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C--C-CCceeEEEECC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLS-----R--H-VIMTGNVLFNG 106 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~-----~--~-~~~~G~I~~nG 106 (697)
|-.++|+|.+|+|||||+|+|+|... + + ....|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 1 12357777765
No 337
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.60 E-value=0.014 Score=55.20 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999999864
No 338
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.58 E-value=0.016 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999863
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.57 E-value=0.017 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
No 340
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.57 E-value=0.017 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999764
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.55 E-value=0.02 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999998654
No 342
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.54 E-value=0.018 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.54 E-value=0.019 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998755
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.54 E-value=0.019 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.52 E-value=0.029 Score=55.20 Aligned_cols=36 Identities=33% Similarity=0.340 Sum_probs=29.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
...++..-.. ..|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456665555 47889999999999999999999876
No 346
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.52 E-value=0.016 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999863
No 347
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.51 E-value=0.017 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
No 348
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.15 Score=55.69 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=42.0
Q ss_pred HHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCCcHHHHHhccceeeecCCe
Q 046969 193 LEILTKPQLLFLDEPSS----------GLDSASAFFVIQTLRNIAR----DGRTVISSIHQPSSEVFALFDDLFLLSGGE 258 (697)
Q Consensus 193 ~~Ll~~P~lllLDEPts----------gLD~~~a~~i~~~L~~la~----~g~tvi~~~Hqp~~~i~~l~D~v~lL~~G~ 258 (697)
.|--..|.|+|+||--+ +=|......+.+.|..+-. .+..||.+|..|. ..|.-+ +.-|+
T Consensus 270 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd-----~LDpAL-lRpGR 343 (437)
T 4b4t_I 270 VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE-----TLDPAL-IRPGR 343 (437)
T ss_dssp HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST-----TCCTTS-SCTTT
T ss_pred HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh-----hcCHHH-hcCCc
Confidence 33345699999999643 2233445556666666542 3568999999984 245544 35555
Q ss_pred ---eeeecChh
Q 046969 259 ---TVYFGEAK 266 (697)
Q Consensus 259 ---iv~~G~~~ 266 (697)
.++.+.|+
T Consensus 344 fD~~I~v~lPd 354 (437)
T 4b4t_I 344 IDRKILFENPD 354 (437)
T ss_dssp EEEEECCCCCC
T ss_pred eeEEEEcCCcC
Confidence 36777665
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.47 E-value=0.018 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 350
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.47 E-value=0.24 Score=62.87 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=87.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCCCeEEEEecCCCCCCCCCHHHH
Q 046969 57 LLQGLY--GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTLTVRET 134 (697)
Q Consensus 57 iL~~vs--~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 134 (697)
-|+.+- +=+++|+++.|.||+|+|||||.-.++..... . | ..+.|+.-+...-+
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~------G-------~~vlyis~E~s~~~------- 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----E------G-------KTCAFIDAEHALDP------- 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----T------T-------CCEEEECTTSCCCH-------
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----h------C-------CCeEEEEccCchHH-------
Confidence 466655 36899999999999999999998776643211 1 1 23556655442211
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 046969 135 ITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEIL--TKPQLLFLDEPSSGLD 212 (697)
Q Consensus 135 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll--~~P~lllLDEPtsgLD 212 (697)
+ .+.. +|+.. .+-.+- ..-++.| -+.+++.++ .+|+++++|..++=..
T Consensus 426 ~-~a~~----------------------lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~ 475 (1706)
T 3cmw_A 426 I-YARK----------------------LGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTP 475 (1706)
T ss_dssp H-HHHH----------------------TTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred H-HHHH----------------------cCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhc
Confidence 0 1111 22210 000010 0113333 234555554 4799999999987653
Q ss_pred H-------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCc---------------HHHHHhccceeeecCCeee
Q 046969 213 S-------------ASAFFVIQTLRNI---AR-DGRTVISSIHQPS---------------SEVFALFDDLFLLSGGETV 260 (697)
Q Consensus 213 ~-------------~~a~~i~~~L~~l---a~-~g~tvi~~~Hqp~---------------~~i~~l~D~v~lL~~G~iv 260 (697)
. ..+..+.+.+++| ++ .|.+||++.|... ..+...+|-++.+...+..
T Consensus 476 ~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~ 555 (1706)
T 3cmw_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 555 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecccc
Confidence 1 1233445555555 44 5899999987521 2466789998888755443
Q ss_pred eec
Q 046969 261 YFG 263 (697)
Q Consensus 261 ~~G 263 (697)
..|
T Consensus 556 ~~g 558 (1706)
T 3cmw_A 556 KEG 558 (1706)
T ss_dssp EET
T ss_pred ccC
Confidence 333
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.46 E-value=0.021 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998643
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.45 E-value=0.018 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.45 E-value=0.018 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998653
No 354
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.44 E-value=0.021 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++++|.|++||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999998754
No 355
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.43 E-value=0.019 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~ 91 (697)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.37 E-value=0.017 Score=56.89 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.34 E-value=0.023 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.34 E-value=0.018 Score=53.60 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.34 E-value=0.02 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999999753
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.02 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.33 E-value=0.022 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 362
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.32 E-value=0.023 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 363
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.31 E-value=0.023 Score=53.83 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3689999999999999999997653
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.30 E-value=0.02 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 365
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.27 E-value=0.013 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.27 E-value=0.025 Score=57.48 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999753
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.26 E-value=0.021 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.25 E-value=0.021 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 369
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.25 E-value=0.38 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997664
No 370
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.24 E-value=0.019 Score=54.60 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 371
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.22 E-value=0.014 Score=62.97 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEeCCCcH
Q 046969 198 KPQLLFLDEPSSGLD---SASAFFVIQTLRNIARDGRTVISSIHQPSS 242 (697)
Q Consensus 198 ~P~lllLDEPtsgLD---~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~ 242 (697)
.|.++++||--.=++ +..+..+.+.+++.++.|..++++||.|++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999877774 667777888888877778899999998853
No 372
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.20 E-value=0.023 Score=59.30 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|.+|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.16 E-value=0.022 Score=55.48 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 374
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.14 E-value=0.023 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 375
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.14 E-value=0.019 Score=58.79 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
No 376
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.13 E-value=0.021 Score=58.10 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999873
No 377
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.11 E-value=0.023 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
No 378
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.11 E-value=0.028 Score=56.58 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.09 E-value=0.022 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 380
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.07 E-value=0.024 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.--++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999754
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.07 E-value=0.024 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
No 382
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.06 E-value=0.026 Score=59.06 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.03 E-value=0.025 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999754
No 384
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.023 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999874
No 385
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.00 E-value=0.024 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 386
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.97 E-value=0.021 Score=55.15 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.96 E-value=0.026 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999999753
No 388
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.96 E-value=0.032 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 389
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.96 E-value=0.028 Score=56.74 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-+++|.|++||||||+-+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.024 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 391
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.93 E-value=0.027 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 392
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.93 E-value=0.024 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999753
No 393
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.90 E-value=0.029 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.88 E-value=0.037 Score=58.74 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999875
No 395
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.88 E-value=0.025 Score=60.89 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~ 91 (697)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999986
No 396
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.87 E-value=0.031 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-+++|.|++||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.85 E-value=0.027 Score=54.98 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 398
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.84 E-value=0.029 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 399
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.84 E-value=0.029 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 400
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.82 E-value=0.059 Score=51.80 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=28.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 55 ~~iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
+..++..-.. -.|.-++|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3455555544 47889999999999999999888764
No 401
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.81 E-value=0.027 Score=58.47 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.80 E-value=0.027 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 403
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.80 E-value=0.032 Score=57.55 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLSR 94 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~~ 94 (697)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 368999999999999999999987643
No 404
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.75 E-value=0.03 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 405
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.74 E-value=0.016 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.74 E-value=0.027 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999999864
No 407
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.73 E-value=0.028 Score=57.67 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 408
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.73 E-value=0.03 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.72 E-value=0.03 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 410
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.71 E-value=0.18 Score=52.37 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 198 KPQLLFLDEPSSGLD-SASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 198 ~P~lllLDEPtsgLD-~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
+++++++||.-. |. ......+.+.+.+.. .+..+|+++.++.
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 689999999843 33 445555666665543 3567888888764
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.70 E-value=0.028 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 412
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.028 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 413
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.67 E-value=0.031 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 414
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.67 E-value=0.028 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 415
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.66 E-value=0.032 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 416
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.031 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999964
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.64 E-value=0.036 Score=54.89 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.64 E-value=0.031 Score=55.14 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999875
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.63 E-value=0.031 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.032 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=0.032 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999753
No 422
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.62 E-value=0.024 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 423
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.61 E-value=0.032 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.59 E-value=0.033 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998764
No 425
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.58 E-value=0.033 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG 90 (697)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 426
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.58 E-value=0.033 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.57 E-value=0.036 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.57 E-value=0.018 Score=59.87 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998643
No 429
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.56 E-value=0.042 Score=54.41 Aligned_cols=28 Identities=46% Similarity=0.653 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
-+|.++.|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
No 430
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.53 E-value=0.029 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.49 E-value=0.037 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
No 432
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.032 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
No 433
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.41 E-value=0.042 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.40 E-value=0.029 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 435
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.034 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.37 E-value=0.049 Score=57.25 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999999765
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.36 E-value=0.032 Score=55.89 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=22.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 65 AEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 65 i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
..+|.++.|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999997654
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.35 E-value=0.041 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 439
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.33 E-value=0.039 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999998753
No 440
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.33 E-value=0.033 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 441
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.30 E-value=0.041 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.26 E-value=0.041 Score=53.90 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.25 E-value=0.04 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 444
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.22 E-value=0.037 Score=58.82 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+++|+||+|||||||-+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999765
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.21 E-value=0.037 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 446
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.21 E-value=0.04 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 447
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.20 E-value=0.04 Score=51.59 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999987653
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.19 E-value=0.05 Score=54.14 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++..++.|+||+||||+|.-+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455688999999999999999998654
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.18 E-value=0.05 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998654
No 450
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.16 E-value=0.028 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.13 E-value=0.042 Score=60.03 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+.+++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998643
No 452
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.11 E-value=0.047 Score=55.04 Aligned_cols=27 Identities=30% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987764
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.09 E-value=0.038 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.06 E-value=0.041 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.03 E-value=0.043 Score=55.73 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 456
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.02 E-value=0.053 Score=60.01 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=28.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 57 iL~~vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 345589999999999999999999998754
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.97 E-value=0.055 Score=52.49 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7777766666665432 23567888888764
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.97 E-value=0.038 Score=54.09 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999754
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.89 E-value=0.048 Score=57.54 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.+++|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.046 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.85 E-value=0.047 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.77 E-value=0.058 Score=53.44 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+|.++.+.|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999997764
No 463
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.057 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 464
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.73 E-value=0.04 Score=55.95 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5778999999999999999999997653
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.73 E-value=0.058 Score=53.62 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999998765
No 466
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.73 E-value=0.066 Score=53.47 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.+|.++.|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.73 E-value=0.061 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
|.+++|-|+.||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998764
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.64 E-value=0.054 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998653
No 469
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.62 E-value=0.027 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998653
No 470
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.056 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.50 E-value=0.055 Score=52.23 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.48 E-value=0.027 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 473
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.47 E-value=0.038 Score=52.35 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999653
No 474
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.34 E-value=0.062 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 475
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.23 E-value=0.46 Score=61.08 Aligned_cols=36 Identities=36% Similarity=0.424 Sum_probs=30.8
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 57 LLQGLYG--YAEPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 57 iL~~vs~--~i~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-|+.+.+ =+++|+++.|-|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3666664 69999999999999999999999888654
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.21 E-value=0.083 Score=55.41 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999764
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.15 E-value=0.063 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046969 69 RIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 69 ei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.14 E-value=0.078 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999653
No 479
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.14 E-value=0.06 Score=59.41 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 185 EKKRLSIALEILTKPQLLFLDEPS-SGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 185 erqRvsIa~~Ll~~P~lllLDEPt-sgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
+++-...+...+.+++++++.... .++.... ..+.+.++ +.++.+|++.+.-
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 666666777777788877665544 4555443 44555543 3577888877663
No 480
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.09 E-value=0.07 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~ 91 (697)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.09 E-value=0.065 Score=51.82 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.95 E-value=0.081 Score=57.46 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-.+++|+||+|||||||...|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999764
No 483
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.83 E-value=0.089 Score=50.67 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC---------cHHHHHhccceeeec
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP---------SSEVFALFDDLFLLS 255 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp---------~~~i~~l~D~v~lL~ 255 (697)
+++++++||--. +|+ .+++.|+.++++|..|+++.++. ...+.+++|.+.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36677888888899999998832 244556677776554
No 484
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.41 E-value=0.34 Score=56.90 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999765
No 485
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.24 E-value=0.1 Score=49.90 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=27.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
++.++++||. ..++......+.+.+.+. ..+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 446666666666666552 2345677777765
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.18 E-value=0.12 Score=55.18 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 67 PGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 67 ~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998765
No 487
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.13 E-value=0.12 Score=47.48 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCcH
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSS 242 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~~ 242 (697)
+..+|++||.- .|+...+..+.+.|... ..+..+|+++..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 34689999984 67888888888877332 224567777777643
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.06 E-value=0.099 Score=54.72 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 046969 198 KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241 (697)
Q Consensus 198 ~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp~ 241 (697)
+++++++|| ...|+......+.+.+.+... ...+|+++++|.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788998888888888776533 345666777764
No 489
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.96 E-value=0.12 Score=53.27 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+++.-+.|.||+|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999998765
No 490
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.94 E-value=0.13 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999875
No 491
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.92 E-value=0.057 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.786 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046969 71 MAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 71 ~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
+.|.||+|+|||||.++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999854
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.91 E-value=0.037 Score=65.65 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=29.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046969 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLS 93 (697)
Q Consensus 61 vs~~i~~Gei~aI~GpsGsGKSTLL~~LaG~~~ 93 (697)
.++.+.+|+.++|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355678999999999999999999999998753
No 493
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.88 E-value=0.13 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 046969 68 GRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 68 Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998876
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.82 E-value=0.076 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 495
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.73 E-value=0.11 Score=56.44 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCcccCccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 046969 155 HVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFL 204 (697)
Q Consensus 155 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~~Ll~~P~lllL 204 (697)
.++++++.++.... ...+|.+|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666667666433 125899998888777777779999887
No 496
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.13 E-value=0.046 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 046969 70 IMAIMGPSGSGKSTLLDSLAG 90 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG 90 (697)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 479999999999999998875
No 497
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.69 E-value=0.35 Score=53.77 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHH--HHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 046969 178 LRGISGGEKKRLSIA--LEILT---------------KPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240 (697)
Q Consensus 178 ~~~LSGGerqRvsIa--~~Ll~---------------~P~lllLDEPtsgLD~~~a~~i~~~L~~la~~g~tvi~~~Hqp 240 (697)
.++.||||+|-.-+| .+++. .-.++++||. +-+|...+...++.++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 468999999964443 33332 1257999999 999999999999999976 7777777633
Q ss_pred cHHHHHhccceeeec
Q 046969 241 SSEVFALFDDLFLLS 255 (697)
Q Consensus 241 ~~~i~~l~D~v~lL~ 255 (697)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3455678777764
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.66 E-value=0.11 Score=57.02 Aligned_cols=23 Identities=39% Similarity=0.718 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 499
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.55 E-value=0.14 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 046969 66 EPGRIMAIMGPSGSGKSTLLDSLAGR 91 (697)
Q Consensus 66 ~~Gei~aI~GpsGsGKSTLL~~LaG~ 91 (697)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567889999999999999999975
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.42 E-value=0.14 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046969 70 IMAIMGPSGSGKSTLLDSLAGRL 92 (697)
Q Consensus 70 i~aI~GpsGsGKSTLL~~LaG~~ 92 (697)
-+||+|++||||||+-+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998654
Done!