BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046970
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 89/173 (51%), Gaps = 28/173 (16%)
Query: 3 SSSLATKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDE-EANRGDEISLALLNA 61
SS ATK YDVFLSFRG DTR NF S L+ L ++ I+ F D+ E G S L +
Sbjct: 2 SSHTATK--YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSP 59
Query: 62 IEGSKISIVIFSKNYASSSGAW-------------------MNFFLSCSSSDVRNQTGSF 102
IE S+ ++V+ S+NYA+SS W M F + VR QTG
Sbjct: 60 IEVSRFAVVVVSENYAASS--WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVL 117
Query: 103 GDAFVKLEKQFEELPEKVHKWSGALTEASNISGWDSTNMRPEARLVDEIVKDI 155
+ F K + E PEKV KW ALT + +SG + +++LVD+I +I
Sbjct: 118 AEQFKKHASR--EDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 12 YDVFLSFRGEDTRDNFTSHLFAALRQKRIKIF-IDEEANRGDEISLALLNAIEGSKISIV 70
Y+VFLSFRG DTR+ FT L+ +LR+ +I F D+E +G EI LL AI+ SKI +
Sbjct: 36 YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVP 95
Query: 71 IFSKNYASSSGAWMNF------------------FLSCSSSDVRNQTGSFGDAFVKLEKQ 112
I S YA S M F SDVR+QTG + AF K +
Sbjct: 96 IISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155
Query: 113 FEELPEKVHKWSGALTEASNISGWDSTNMRPEARLVDEIVKDI 155
F+ + + W AL + ++ GW + + D++ DI
Sbjct: 156 FDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQIS---SEFEGECFITNVREESERVGLVHLRERVLSEILE 251
V I+GM G GK+ A S F G ++ ++ + L+ L+ + E
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 252 ENLKIGTLNLPEYIKERLQQMKVF---------IVLDDVNKPEQLIFLVGGLDRFGPRSR 302
E+ + LP I+E +++V ++LDDV P L F + +
Sbjct: 210 ESF---SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------WVLKAFDNQCQ 259
Query: 303 IIVTTRDKQVFDECE-VDSIYEVE-GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDY 360
I++TTRDK V D + VE GL +++ LE+ S F +K +D + ++
Sbjct: 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKE 316
Query: 361 ANGNPLALKVLGSFF 375
G+PL + ++G+
Sbjct: 317 CKGSPLVVSLIGALL 331
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQIS---SEFEGECFITNVREESERVGLVHLRERVLSEILE 251
V I+GM G GK+ A S F G ++ ++ + L+ L+ + E
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 252 ENLKIGTLNLPEYIKERLQQMKVF---------IVLDDVNKPEQLIFLVGGLDRFGPRSR 302
E+ + LP I+E +++V ++LDDV P L F + +
Sbjct: 217 ESF---SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------WVLKAFDNQCQ 266
Query: 303 IIVTTRDKQVFDECE-VDSIYEVE-GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDY 360
I++TT DK V D + VE GL +++ LE+ S F +K +D + ++
Sbjct: 267 ILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKE 323
Query: 361 ANGNPLALKVLGSFF 375
G+PL + ++G+
Sbjct: 324 CKGSPLVVSLIGALL 338
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREES----ERVGLVHLRERVLSEIL 250
V I GM G GK+ A S EG CF V S ++ GL+ ++ + L L
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRD-HSLLEG-CFPGGVHWVSVGKQDKSGLL-MKLQNLCTRL 212
Query: 251 EENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDR-----FGPRSRIIV 305
+++ LP I+E ++++ ++ P L+ L D F + +I++
Sbjct: 213 DQDESFSQ-RLPLNIEEAKDRLRILMLR---KHPRSLLILDDVWDSWVLKAFDSQCQILL 268
Query: 306 TTRDKQVFDECE-VDSIYEVE-GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG 363
TTRDK V D + VE L K++ LE+ S F +K D + ++ G
Sbjct: 269 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKG 325
Query: 364 NPLALKVLGSFF 375
+PL + ++G+
Sbjct: 326 SPLVVSLIGALL 337
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREES----ERVGLVHLRERVLSEIL 250
V I GM G GK+ A S EG CF V S ++ GL+ ++ + L L
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRD-HSLLEG-CFPGGVHWVSVGKQDKSGLL-MKLQNLCTRL 206
Query: 251 EENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDR-----FGPRSRIIV 305
+++ LP I+E ++++ ++ P L+ L D F + +I++
Sbjct: 207 DQDESFSQ-RLPLNIEEAKDRLRILMLR---KHPRSLLILDDVWDSWVLKAFDSQCQILL 262
Query: 306 TTRDKQVFDECE-VDSIYEVE-GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG 363
TTRDK V D + VE L K++ LE+ S F +K D + ++ G
Sbjct: 263 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKG 319
Query: 364 NPLALKVLGSFF 375
+PL + ++G+
Sbjct: 320 SPLVVSLIGALL 331
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT F + N I+ G T V E R R +++ E
Sbjct: 186 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGE----------RTREGNDLYREMK 235
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 236 ETGVINLE-------GESKVALVFGQMNEPP------------GARARVALT 268
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 194 IVGIWGMGGIGKTTFAGAIFNQISSE 219
I+GI G GIGKTTFA + +I+++
Sbjct: 296 IIGILGPNGIGKTTFARILVGEITAD 321
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT F + N I+ G T V E R R +++ E
Sbjct: 159 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGE----------RTREGNDLYREMK 208
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 209 ETGVINLE-------GESKVALVFGQMNEPP------------GARARVALT 241
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT F + N I+ G T V E R R +++ E
Sbjct: 148 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGE----------RTREGNDLYREMK 197
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 198 ETGVINLE-------GESKVALVFGQMNEPP------------GARARVALT 230
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT F + N I+ G T V E R R +++ E
Sbjct: 159 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGE----------RTREGNDLYREMK 208
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 209 ETGVINLE-------GESKVALVFGQMNEPP------------GARARVALT 241
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT F + N I+ G T V E R R +++ E
Sbjct: 153 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGE----------RTREGNDLYREMK 202
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 203 ETGVINLE-------GESKVALVFGQMNEPP------------GARARVALT 235
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT F + N I+ G T V E R R +++ E
Sbjct: 148 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGE----------RTREGNDLYREMK 197
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 198 ETGVINLE-------GESKVALVFGQMNEPP------------GARARVALT 230
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 202 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 251
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 252 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 285
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 201
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 202 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 235
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 205
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 206 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 239
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 154 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 203
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 204 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 237
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 144 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 193
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 194 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 227
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 205
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 206 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 239
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL 254
+G++G G+GKT + N ++ G V E R R +++ E +
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE----------RTREGNDLYHEMI 205
Query: 255 KIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVT 306
+ G +NL + KV +V +N+P G R+R+ +T
Sbjct: 206 ESGVINLKDATS------KVALVYGQMNEPP------------GARARVALT 239
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 17 SFRGEDTRDNFTSHLFAALRQKRIKIFIDEEANRGDEISLALLNA------------IEG 64
SFR D +F QKR + + D+I LL+A + G
Sbjct: 201 SFRRRDRAHREIKDIFYKAIQKR-----RQSQEKIDDILQTLLDATYKDGRPLTDDEVAG 255
Query: 65 SKISIVIFSKNYASSSGAWMNFFLS 89
I +++ ++ +S++ AWM FFL+
Sbjct: 256 MLIGLLLAGQHTSSTTSAWMGFFLA 280
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 216 ISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMK 273
I + G +VR + LV++RE LSE+L+ + ++P+ + ERLQ+ K
Sbjct: 287 IEHNYGGHDDDLSVRHCTNAYXLVYIRESKLSEVLQ---AVTDHDIPQQLVERLQEEK 341
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 250 LEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIF 289
L+ K LN Y+ E M FIVL D+N P++L+
Sbjct: 260 LKSGFKTLILNNNIYVSELSSNMVCFIVLKDMNIPQELVL 299
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 227 TNVREESERVGLVHLRERVLSEILE--ENLKI---GTLNLPEYIKERL-QQMKVFIVLDD 280
+N+R E+ G+V+ E VL ++ + EN K G+ N+ +Y+ E+L ++ + + + D
Sbjct: 211 SNIRAEATGYGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSD 270
Query: 281 VN 282
N
Sbjct: 271 SN 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,716,000
Number of Sequences: 62578
Number of extensions: 485631
Number of successful extensions: 1366
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 35
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)