Query 046970
Match_columns 420
No_of_seqs 399 out of 2808
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4E-76 8.7E-81 644.5 36.7 405 1-410 1-449 (1153)
2 PLN03194 putative disease resi 100.0 1E-39 2.2E-44 274.4 13.4 147 2-161 17-179 (187)
3 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-37 9.3E-42 322.4 17.3 242 172-419 161-423 (889)
4 PF00931 NB-ARC: NB-ARC domain 100.0 8.3E-37 1.8E-41 288.1 10.5 242 174-419 1-262 (287)
5 PF01582 TIR: TIR domain; Int 99.7 1.4E-18 3E-23 145.7 0.8 115 14-128 1-140 (141)
6 smart00255 TIR Toll - interleu 99.7 5.7E-17 1.2E-21 135.9 8.4 119 11-131 1-138 (140)
7 PF01637 Arch_ATPase: Archaeal 99.4 5.7E-13 1.2E-17 121.3 7.5 195 171-370 1-233 (234)
8 PF13676 TIR_2: TIR domain; PD 99.3 4.2E-13 9E-18 105.9 1.4 74 14-89 1-87 (102)
9 PRK00411 cdc6 cell division co 99.3 6E-11 1.3E-15 117.0 15.9 200 167-373 28-257 (394)
10 PF05729 NACHT: NACHT domain 99.3 5.8E-11 1.3E-15 102.0 11.7 140 193-340 1-163 (166)
11 PRK04841 transcriptional regul 99.2 1.4E-10 3.1E-15 126.5 15.9 192 167-378 12-232 (903)
12 TIGR02928 orc1/cdc6 family rep 99.2 6E-10 1.3E-14 108.8 18.6 198 167-368 13-243 (365)
13 TIGR03015 pepcterm_ATPase puta 99.2 2.9E-10 6.4E-15 106.0 15.5 178 192-375 43-242 (269)
14 TIGR00635 ruvB Holliday juncti 99.1 2.8E-10 6.1E-15 108.2 9.1 190 169-374 4-204 (305)
15 COG2256 MGS1 ATPase related to 99.1 8.7E-10 1.9E-14 103.6 11.5 149 190-365 46-206 (436)
16 PRK06893 DNA replication initi 99.1 2.4E-09 5.1E-14 97.3 12.9 154 192-375 39-207 (229)
17 PRK00080 ruvB Holliday junctio 99.1 4.3E-10 9.2E-15 107.9 8.4 192 167-374 23-225 (328)
18 TIGR03420 DnaA_homol_Hda DnaA 98.9 6.9E-09 1.5E-13 94.2 10.6 175 168-374 14-204 (226)
19 PRK13342 recombination factor 98.9 2.7E-08 5.9E-13 98.4 14.1 177 167-372 10-197 (413)
20 PRK14961 DNA polymerase III su 98.8 1.6E-07 3.5E-12 91.3 14.8 189 167-367 14-216 (363)
21 PF13173 AAA_14: AAA domain 98.8 4.4E-08 9.5E-13 80.5 9.0 119 193-332 3-127 (128)
22 PRK07003 DNA polymerase III su 98.8 6.2E-08 1.4E-12 99.2 11.9 193 167-371 14-221 (830)
23 COG3899 Predicted ATPase [Gene 98.8 4E-08 8.6E-13 104.9 11.0 204 170-378 1-267 (849)
24 PRK14949 DNA polymerase III su 98.7 1.6E-07 3.4E-12 98.1 14.1 180 167-369 14-218 (944)
25 PF05496 RuvB_N: Holliday junc 98.7 1E-07 2.2E-12 84.0 10.8 179 167-376 22-226 (233)
26 PRK08903 DnaA regulatory inact 98.7 1.2E-07 2.6E-12 86.1 11.6 152 191-376 41-204 (227)
27 PF13401 AAA_22: AAA domain; P 98.7 4.8E-08 1E-12 80.4 7.9 113 191-309 3-125 (131)
28 PRK12402 replication factor C 98.7 2.1E-07 4.6E-12 89.8 13.6 197 168-370 14-225 (337)
29 KOG2028 ATPase related to the 98.7 1.7E-07 3.7E-12 87.0 11.8 148 167-338 136-292 (554)
30 PF00308 Bac_DnaA: Bacterial d 98.7 2.5E-07 5.4E-12 83.3 12.5 161 192-373 34-210 (219)
31 PRK08727 hypothetical protein; 98.7 4.5E-07 9.8E-12 82.5 13.9 146 193-368 42-201 (233)
32 PRK14960 DNA polymerase III su 98.7 3.3E-07 7.2E-12 93.0 13.7 191 167-369 13-217 (702)
33 PRK14963 DNA polymerase III su 98.7 5.2E-07 1.1E-11 90.8 15.1 187 167-368 12-214 (504)
34 PRK12323 DNA polymerase III su 98.7 2.3E-07 4.9E-12 94.0 12.3 196 167-369 14-223 (700)
35 COG2909 MalT ATP-dependent tra 98.7 3.4E-07 7.3E-12 93.8 13.4 194 167-377 17-239 (894)
36 PRK04195 replication factor C 98.6 9.8E-08 2.1E-12 96.4 9.5 178 167-369 12-200 (482)
37 PTZ00112 origin recognition co 98.6 4.1E-07 9E-12 94.0 13.9 201 167-375 753-986 (1164)
38 TIGR01242 26Sp45 26S proteasom 98.6 1.8E-07 3.9E-12 91.1 11.0 171 169-365 122-328 (364)
39 PRK09087 hypothetical protein; 98.6 5.9E-07 1.3E-11 81.2 13.5 140 192-372 44-196 (226)
40 PRK08084 DNA replication initi 98.6 8.7E-07 1.9E-11 80.8 14.4 153 192-375 45-213 (235)
41 PRK07471 DNA polymerase III su 98.6 8.3E-07 1.8E-11 85.8 14.9 197 167-371 17-238 (365)
42 cd00009 AAA The AAA+ (ATPases 98.6 1.9E-07 4.2E-12 77.8 9.4 122 173-311 2-131 (151)
43 PRK05564 DNA polymerase III su 98.6 5.9E-07 1.3E-11 85.7 13.8 175 169-369 4-188 (313)
44 PRK05642 DNA replication initi 98.6 8E-07 1.7E-11 80.9 14.0 153 193-375 46-212 (234)
45 PLN03025 replication factor C 98.6 2.4E-07 5.1E-12 88.6 10.9 182 167-368 11-197 (319)
46 PRK14087 dnaA chromosomal repl 98.6 5.1E-07 1.1E-11 89.9 13.4 167 192-375 141-323 (450)
47 PF13191 AAA_16: AAA ATPase do 98.6 3.4E-08 7.4E-13 86.4 4.5 50 170-219 1-51 (185)
48 PRK00440 rfc replication facto 98.6 5E-07 1.1E-11 86.4 12.7 182 167-368 15-200 (319)
49 TIGR02397 dnaX_nterm DNA polym 98.6 1.1E-06 2.4E-11 85.4 15.2 182 167-371 12-218 (355)
50 COG3903 Predicted ATPase [Gene 98.6 3.7E-08 7.9E-13 93.4 4.2 182 191-382 13-200 (414)
51 COG1474 CDC6 Cdc6-related prot 98.6 1.3E-06 2.8E-11 84.4 14.9 197 167-370 15-237 (366)
52 PRK14962 DNA polymerase III su 98.6 1.1E-06 2.5E-11 87.7 14.9 186 167-375 12-223 (472)
53 PRK14957 DNA polymerase III su 98.6 1E-06 2.2E-11 89.0 14.5 181 167-371 14-221 (546)
54 TIGR00678 holB DNA polymerase 98.6 2.2E-06 4.8E-11 75.4 14.9 89 271-367 95-187 (188)
55 PTZ00202 tuzin; Provisional 98.6 7.9E-07 1.7E-11 85.6 12.2 192 134-339 220-433 (550)
56 PRK07994 DNA polymerase III su 98.6 1E-06 2.2E-11 90.4 13.9 191 167-369 14-218 (647)
57 PRK08691 DNA polymerase III su 98.6 4.4E-07 9.5E-12 92.8 11.1 191 167-369 14-218 (709)
58 PRK07940 DNA polymerase III su 98.5 1.4E-06 3.1E-11 84.9 14.1 183 169-368 5-210 (394)
59 PRK14964 DNA polymerase III su 98.5 1.5E-06 3.2E-11 86.6 14.0 189 167-367 11-213 (491)
60 PRK14956 DNA polymerase III su 98.5 1.7E-06 3.7E-11 85.4 13.7 186 167-367 16-218 (484)
61 PRK14951 DNA polymerase III su 98.5 1.9E-06 4.2E-11 88.2 14.6 196 167-370 14-224 (618)
62 PRK06645 DNA polymerase III su 98.5 1.8E-06 4E-11 86.6 14.1 194 167-368 19-226 (507)
63 PRK09112 DNA polymerase III su 98.5 3.2E-06 6.8E-11 81.4 15.0 193 167-371 21-240 (351)
64 PRK14958 DNA polymerase III su 98.5 1.5E-06 3.2E-11 87.7 12.7 191 167-369 14-218 (509)
65 PRK14969 DNA polymerase III su 98.5 1.4E-06 3.1E-11 88.3 12.7 188 167-366 14-215 (527)
66 PRK13341 recombination factor 98.5 1.9E-06 4.1E-11 90.2 13.3 173 167-369 26-215 (725)
67 PRK05896 DNA polymerase III su 98.5 2.6E-06 5.7E-11 86.3 13.6 195 167-373 14-223 (605)
68 PRK03992 proteasome-activating 98.4 9.4E-07 2E-11 86.6 10.1 170 169-364 131-336 (389)
69 PRK14088 dnaA chromosomal repl 98.4 4.6E-06 1E-10 83.0 14.9 153 192-364 130-298 (440)
70 PRK00149 dnaA chromosomal repl 98.4 3.7E-06 8E-11 84.3 13.8 155 192-368 148-319 (450)
71 TIGR00362 DnaA chromosomal rep 98.4 7.3E-06 1.6E-10 81.1 15.2 157 192-369 136-308 (405)
72 PRK09111 DNA polymerase III su 98.4 4.8E-06 1E-10 85.4 13.9 194 167-370 22-232 (598)
73 PRK07764 DNA polymerase III su 98.4 4.7E-06 1E-10 88.3 14.1 188 167-366 13-216 (824)
74 PRK12422 chromosomal replicati 98.4 1.5E-05 3.2E-10 79.3 16.6 130 193-341 142-285 (445)
75 PRK14952 DNA polymerase III su 98.4 7.1E-06 1.5E-10 83.7 14.6 193 167-371 11-220 (584)
76 PRK14959 DNA polymerase III su 98.4 6.5E-06 1.4E-10 83.9 14.0 197 167-375 14-225 (624)
77 PRK14950 DNA polymerase III su 98.4 4.7E-06 1E-10 86.0 13.2 193 167-370 14-220 (585)
78 PRK06620 hypothetical protein; 98.4 4E-06 8.7E-11 75.1 11.0 135 193-371 45-189 (214)
79 PRK14970 DNA polymerase III su 98.3 8.5E-06 1.8E-10 79.6 14.0 179 167-367 15-205 (367)
80 PRK14955 DNA polymerase III su 98.3 3.9E-06 8.5E-11 82.6 11.3 196 167-368 14-225 (397)
81 TIGR02639 ClpA ATP-dependent C 98.3 2.5E-06 5.5E-11 90.4 10.6 169 147-340 164-358 (731)
82 TIGR03689 pup_AAA proteasome A 98.3 7.5E-06 1.6E-10 82.0 13.1 160 167-340 180-378 (512)
83 TIGR02903 spore_lon_C ATP-depe 98.3 5.6E-06 1.2E-10 85.7 12.5 202 167-374 152-398 (615)
84 TIGR03345 VI_ClpV1 type VI sec 98.3 8.2E-06 1.8E-10 87.4 13.8 166 147-339 169-362 (852)
85 PRK14953 DNA polymerase III su 98.3 2.1E-05 4.6E-10 79.0 15.7 193 167-371 14-220 (486)
86 PRK14086 dnaA chromosomal repl 98.3 1.7E-05 3.7E-10 80.5 14.9 131 193-342 315-461 (617)
87 TIGR02881 spore_V_K stage V sp 98.3 2E-05 4.3E-10 73.1 13.5 131 191-341 41-192 (261)
88 PF14516 AAA_35: AAA-like doma 98.2 5.6E-05 1.2E-09 72.5 16.9 203 167-379 9-247 (331)
89 PRK07133 DNA polymerase III su 98.2 2.4E-05 5.2E-10 81.1 15.1 183 167-366 16-214 (725)
90 PHA02544 44 clamp loader, smal 98.2 8.4E-06 1.8E-10 77.9 10.9 147 167-337 19-170 (316)
91 PRK14954 DNA polymerase III su 98.2 2.3E-05 4.9E-10 80.6 14.3 194 167-366 14-223 (620)
92 PRK06305 DNA polymerase III su 98.2 4.3E-05 9.4E-10 76.2 15.5 189 167-366 15-217 (451)
93 PRK05707 DNA polymerase III su 98.2 6.4E-05 1.4E-09 71.7 16.0 93 272-370 106-202 (328)
94 PRK08451 DNA polymerase III su 98.2 3.3E-05 7.1E-10 77.9 14.4 189 167-370 12-217 (535)
95 PRK06647 DNA polymerase III su 98.2 4.1E-05 8.8E-10 78.2 15.0 189 167-368 14-217 (563)
96 PRK14948 DNA polymerase III su 98.2 1.9E-05 4.1E-10 81.6 12.7 193 167-369 14-220 (620)
97 PRK05563 DNA polymerase III su 98.1 5.8E-05 1.3E-09 77.4 15.3 189 167-367 14-216 (559)
98 PRK10865 protein disaggregatio 98.1 2.3E-05 5E-10 84.2 12.7 66 147-218 160-225 (857)
99 PTZ00454 26S protease regulato 98.1 2.1E-05 4.6E-10 77.0 11.2 171 169-365 145-351 (398)
100 COG0593 DnaA ATPase involved i 98.1 3.9E-05 8.4E-10 74.3 12.6 133 191-341 112-258 (408)
101 PF00004 AAA: ATPase family as 98.1 3.2E-05 6.9E-10 63.4 10.3 23 195-217 1-23 (132)
102 PRK14965 DNA polymerase III su 98.1 4.5E-05 9.7E-10 78.5 13.6 192 167-371 14-221 (576)
103 PRK09376 rho transcription ter 98.1 5.4E-06 1.2E-10 79.3 6.4 100 181-283 159-267 (416)
104 CHL00176 ftsH cell division pr 98.1 1.9E-05 4E-10 81.7 10.6 170 169-363 183-386 (638)
105 cd01128 rho_factor Transcripti 98.1 5.4E-06 1.2E-10 75.8 6.0 92 191-284 15-115 (249)
106 CHL00095 clpC Clp protease ATP 98.1 1.2E-05 2.6E-10 86.4 9.4 150 168-338 178-352 (821)
107 PTZ00361 26 proteosome regulat 98.1 1E-05 2.2E-10 79.8 7.6 152 169-342 183-369 (438)
108 PF05621 TniB: Bacterial TniB 98.0 5.4E-05 1.2E-09 70.1 11.5 185 178-369 46-259 (302)
109 PRK08116 hypothetical protein; 98.0 2E-05 4.3E-10 73.2 8.8 102 193-310 115-221 (268)
110 TIGR03346 chaperone_ClpB ATP-d 98.0 2.6E-05 5.6E-10 84.1 10.9 152 167-339 171-348 (852)
111 COG1222 RPT1 ATP-dependent 26S 98.0 1.8E-05 3.8E-10 74.0 7.9 150 190-365 183-357 (406)
112 KOG3678 SARM protein (with ste 98.0 1.8E-05 3.9E-10 75.7 7.6 70 8-79 609-679 (832)
113 TIGR02880 cbbX_cfxQ probable R 98.0 0.00014 2.9E-09 68.3 13.5 128 193-340 59-208 (284)
114 PRK07399 DNA polymerase III su 98.0 0.00011 2.4E-09 69.8 12.9 193 169-372 4-222 (314)
115 PRK14971 DNA polymerase III su 98.0 0.00015 3.2E-09 75.1 14.8 191 167-368 15-219 (614)
116 PF05673 DUF815: Protein of un 98.0 0.00025 5.4E-09 63.7 14.2 53 167-219 25-79 (249)
117 KOG0989 Replication factor C, 98.0 2.6E-05 5.6E-10 71.4 8.0 181 167-364 34-223 (346)
118 KOG2543 Origin recognition com 98.0 0.00021 4.4E-09 67.5 14.0 198 167-375 4-230 (438)
119 TIGR01241 FtsH_fam ATP-depende 98.0 4.5E-05 9.7E-10 77.5 10.6 179 168-371 54-267 (495)
120 PRK11034 clpA ATP-dependent Cl 98.0 1.6E-05 3.5E-10 83.7 7.6 152 168-340 185-362 (758)
121 CHL00181 cbbX CbbX; Provisiona 97.9 0.00039 8.3E-09 65.3 15.1 131 192-341 59-210 (287)
122 TIGR00767 rho transcription te 97.9 2.7E-05 5.8E-10 75.0 7.4 92 191-284 167-267 (415)
123 COG1373 Predicted ATPase (AAA+ 97.9 0.00019 4.1E-09 70.5 12.9 118 194-335 39-162 (398)
124 PRK08181 transposase; Validate 97.9 6E-05 1.3E-09 69.7 8.7 36 192-227 106-141 (269)
125 smart00382 AAA ATPases associa 97.9 4.4E-05 9.6E-10 62.8 6.9 35 193-227 3-37 (148)
126 PRK08769 DNA polymerase III su 97.8 0.0009 2E-08 63.5 16.3 93 271-371 112-208 (319)
127 PRK09183 transposase/IS protei 97.8 8.6E-05 1.9E-09 68.6 8.8 36 192-227 102-137 (259)
128 TIGR01243 CDC48 AAA family ATP 97.8 6.2E-05 1.4E-09 80.1 8.7 174 167-365 176-381 (733)
129 PRK12377 putative replication 97.7 0.00015 3.2E-09 66.3 9.0 36 192-227 101-136 (248)
130 COG0488 Uup ATPase components 97.7 0.00089 1.9E-08 67.8 15.1 129 191-326 347-511 (530)
131 TIGR01243 CDC48 AAA family ATP 97.7 0.00015 3.3E-09 77.2 10.2 171 169-365 453-657 (733)
132 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00024 5.2E-09 71.3 10.8 174 169-364 228-428 (489)
133 TIGR00602 rad24 checkpoint pro 97.7 5.6E-05 1.2E-09 77.8 6.5 51 167-217 82-135 (637)
134 PRK06526 transposase; Provisio 97.7 8.8E-05 1.9E-09 68.2 6.8 28 192-219 98-125 (254)
135 PRK10536 hypothetical protein; 97.7 0.00013 2.7E-09 66.3 7.4 134 169-309 55-212 (262)
136 COG3267 ExeA Type II secretory 97.7 0.002 4.3E-08 57.9 14.5 176 191-373 50-247 (269)
137 PRK10865 protein disaggregatio 97.7 0.00041 9E-09 74.7 12.3 116 169-293 568-693 (857)
138 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0011 2.4E-08 61.5 13.6 24 193-216 22-45 (262)
139 PRK07952 DNA replication prote 97.7 0.00011 2.4E-09 67.0 6.7 36 192-227 99-134 (244)
140 KOG2227 Pre-initiation complex 97.7 0.00086 1.9E-08 65.0 12.9 201 167-372 148-373 (529)
141 TIGR02639 ClpA ATP-dependent C 97.6 0.00048 1E-08 73.3 12.4 161 168-340 453-662 (731)
142 cd01131 PilT Pilus retraction 97.6 0.00016 3.4E-09 64.1 7.3 110 193-313 2-112 (198)
143 PRK07993 DNA polymerase III su 97.6 0.0013 2.8E-08 63.1 13.9 160 192-367 24-200 (334)
144 PRK06921 hypothetical protein; 97.6 0.00012 2.7E-09 67.8 6.7 36 192-227 117-153 (266)
145 KOG0744 AAA+-type ATPase [Post 97.6 0.00044 9.6E-09 63.8 10.0 134 192-340 177-340 (423)
146 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00036 7.9E-09 75.4 11.2 51 169-219 565-622 (852)
147 PLN00020 ribulose bisphosphate 97.6 0.0022 4.9E-08 61.1 15.0 29 191-219 147-175 (413)
148 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.0002 4.3E-09 60.0 7.3 113 190-324 24-140 (144)
149 KOG0730 AAA+-type ATPase [Post 97.6 0.0006 1.3E-08 68.7 11.6 132 189-342 465-617 (693)
150 PRK06090 DNA polymerase III su 97.6 0.0066 1.4E-07 57.6 18.0 90 272-371 108-201 (319)
151 PRK08058 DNA polymerase III su 97.6 0.0015 3.1E-08 62.8 13.7 157 171-339 7-181 (329)
152 PRK06964 DNA polymerase III su 97.6 0.0023 5E-08 61.3 14.7 88 272-369 132-223 (342)
153 PRK06871 DNA polymerase III su 97.6 0.0042 9.1E-08 59.1 16.2 159 192-366 24-198 (325)
154 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00037 8E-09 63.2 8.4 123 191-315 29-204 (254)
155 COG2812 DnaX DNA polymerase II 97.5 0.00023 4.9E-09 71.1 7.7 187 167-365 14-214 (515)
156 KOG0735 AAA+-type ATPase [Post 97.5 0.0011 2.4E-08 67.3 12.3 159 192-370 431-615 (952)
157 PF01695 IstB_IS21: IstB-like 97.5 0.00012 2.6E-09 63.6 5.0 36 192-227 47-82 (178)
158 TIGR02237 recomb_radB DNA repa 97.5 0.00044 9.5E-09 61.8 8.2 44 184-227 4-47 (209)
159 KOG0741 AAA+-type ATPase [Post 97.5 0.0021 4.6E-08 63.2 13.2 127 190-340 536-686 (744)
160 KOG0991 Replication factor C, 97.5 0.00033 7.1E-09 61.8 6.8 50 167-218 25-74 (333)
161 PF08357 SEFIR: SEFIR domain; 97.5 0.00014 3.1E-09 61.3 4.5 64 13-76 2-70 (150)
162 COG1484 DnaC DNA replication p 97.5 0.00048 1E-08 63.4 8.1 37 191-227 104-140 (254)
163 PRK06835 DNA replication prote 97.5 0.00039 8.4E-09 66.3 7.7 35 193-227 184-218 (329)
164 cd03214 ABC_Iron-Siderophores_ 97.4 0.00058 1.3E-08 59.5 8.2 129 191-324 24-171 (180)
165 PRK09361 radB DNA repair and r 97.4 0.00042 9.2E-09 62.7 7.6 47 181-227 12-58 (225)
166 cd01120 RecA-like_NTPases RecA 97.4 0.0009 2E-08 56.7 9.2 34 194-227 1-34 (165)
167 TIGR00763 lon ATP-dependent pr 97.4 0.0023 5.1E-08 68.5 14.2 52 169-220 320-375 (775)
168 COG0466 Lon ATP-dependent Lon 97.4 0.001 2.3E-08 67.7 10.6 52 169-220 323-378 (782)
169 PRK04132 replication factor C 97.4 0.0024 5.3E-08 67.8 13.9 152 197-368 569-728 (846)
170 PRK11331 5-methylcytosine-spec 97.4 9.3E-05 2E-09 72.5 2.9 104 169-284 175-284 (459)
171 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00067 1.5E-08 58.3 7.9 127 191-325 26-161 (166)
172 cd03247 ABCC_cytochrome_bd The 97.4 0.0013 2.7E-08 57.2 9.7 122 191-325 27-170 (178)
173 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00046 9.9E-09 59.8 6.8 116 191-327 24-148 (177)
174 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00096 2.1E-08 66.6 9.5 52 168-219 189-250 (802)
175 PRK07261 topology modulation p 97.4 0.00074 1.6E-08 58.3 7.9 23 194-216 2-24 (171)
176 COG0470 HolB ATPase involved i 97.4 0.00076 1.7E-08 64.5 8.8 143 171-332 3-173 (325)
177 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0019 4E-08 64.6 11.3 128 192-341 545-693 (802)
178 COG0542 clpA ATP-binding subun 97.4 0.001 2.2E-08 69.4 10.0 117 169-295 491-618 (786)
179 cd01394 radB RadB. The archaea 97.4 0.0006 1.3E-08 61.4 7.4 48 180-227 7-54 (218)
180 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00053 1.1E-08 73.7 8.1 50 169-218 566-622 (852)
181 PRK06067 flagellar accessory p 97.3 0.00044 9.5E-09 63.0 6.5 47 181-227 14-60 (234)
182 cd03228 ABCC_MRP_Like The MRP 97.3 0.001 2.2E-08 57.5 8.4 124 191-324 27-167 (171)
183 PF04665 Pox_A32: Poxvirus A32 97.3 0.00021 4.6E-09 64.5 4.3 34 194-227 15-48 (241)
184 PRK08939 primosomal protein Dn 97.3 0.0011 2.4E-08 62.7 9.3 36 192-227 156-191 (306)
185 cd01393 recA_like RecA is a b 97.3 0.00086 1.9E-08 60.7 8.3 47 181-227 8-60 (226)
186 PF13207 AAA_17: AAA domain; P 97.3 0.00017 3.7E-09 58.3 3.2 23 194-216 1-23 (121)
187 PF10443 RNA12: RNA12 protein; 97.3 0.0059 1.3E-07 59.3 14.1 106 273-379 149-286 (431)
188 PRK04296 thymidine kinase; Pro 97.3 0.00035 7.5E-09 61.5 5.4 110 193-311 3-117 (190)
189 COG1120 FepC ABC-type cobalami 97.3 0.0006 1.3E-08 62.1 7.0 54 262-316 146-205 (258)
190 COG2255 RuvB Holliday junction 97.3 0.0012 2.6E-08 60.1 8.7 179 167-376 24-228 (332)
191 cd03216 ABC_Carb_Monos_I This 97.3 0.00041 8.9E-09 59.4 5.5 124 191-324 25-155 (163)
192 CHL00095 clpC Clp protease ATP 97.3 0.00072 1.6E-08 72.8 8.6 132 169-309 509-661 (821)
193 COG1136 SalX ABC-type antimicr 97.3 0.0011 2.3E-08 59.3 8.2 61 262-325 150-216 (226)
194 PRK08699 DNA polymerase III su 97.3 0.0051 1.1E-07 58.7 13.5 67 273-339 114-184 (325)
195 PRK08118 topology modulation p 97.3 0.00025 5.4E-09 61.0 3.9 33 194-226 3-38 (167)
196 COG4608 AppF ABC-type oligopep 97.3 0.00067 1.5E-08 61.7 6.7 123 191-316 38-176 (268)
197 PRK10787 DNA-binding ATP-depen 97.3 0.002 4.3E-08 68.6 11.3 80 141-220 284-377 (784)
198 COG1223 Predicted ATPase (AAA+ 97.3 0.0012 2.5E-08 59.4 7.9 171 169-364 121-318 (368)
199 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0028 6E-08 53.6 9.9 114 193-311 3-139 (159)
200 cd01133 F1-ATPase_beta F1 ATP 97.3 0.0014 3E-08 60.4 8.7 92 191-284 68-175 (274)
201 PF02562 PhoH: PhoH-like prote 97.3 0.0017 3.7E-08 57.4 8.8 115 192-309 19-155 (205)
202 PRK10733 hflB ATP-dependent me 97.2 0.0027 5.8E-08 66.5 11.7 128 193-342 186-337 (644)
203 KOG0743 AAA+-type ATPase [Post 97.2 0.0055 1.2E-07 59.5 12.8 151 192-378 235-417 (457)
204 PF13177 DNA_pol3_delta2: DNA 97.2 0.0019 4.2E-08 55.1 8.9 115 192-328 19-162 (162)
205 PRK12608 transcription termina 97.2 0.0014 2.9E-08 63.0 8.5 90 191-282 132-230 (380)
206 cd01121 Sms Sms (bacterial rad 97.2 0.00095 2.1E-08 64.8 7.3 49 179-227 69-117 (372)
207 cd00544 CobU Adenosylcobinamid 97.2 0.00058 1.3E-08 58.7 5.1 79 195-281 2-82 (169)
208 PRK11034 clpA ATP-dependent Cl 97.2 0.002 4.4E-08 68.1 10.2 49 169-217 458-513 (758)
209 cd03238 ABC_UvrA The excision 97.2 0.0018 3.9E-08 56.1 8.2 125 190-325 19-162 (176)
210 PHA00729 NTP-binding motif con 97.2 0.0016 3.5E-08 58.2 7.9 26 192-217 17-42 (226)
211 PF00448 SRP54: SRP54-type pro 97.2 0.0012 2.7E-08 58.2 7.1 36 192-227 1-36 (196)
212 COG1618 Predicted nucleotide k 97.1 0.00051 1.1E-08 57.2 4.1 37 193-229 6-44 (179)
213 cd03230 ABC_DR_subfamily_A Thi 97.1 0.002 4.2E-08 55.8 8.0 126 190-324 24-168 (173)
214 COG2884 FtsE Predicted ATPase 97.1 0.003 6.4E-08 54.3 8.6 53 262-316 145-203 (223)
215 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00015 3.3E-09 69.1 0.8 49 170-218 52-104 (361)
216 KOG0731 AAA+-type ATPase conta 97.1 0.0027 5.7E-08 65.9 9.8 178 168-368 310-521 (774)
217 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0019 4.1E-08 58.8 7.9 47 181-227 8-60 (235)
218 COG2607 Predicted ATPase (AAA+ 97.1 0.0033 7.3E-08 55.9 8.9 56 167-222 58-115 (287)
219 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00094 2E-08 56.7 5.5 124 191-325 24-154 (157)
220 COG0488 Uup ATPase components 97.1 0.0015 3.2E-08 66.3 7.7 59 262-326 161-225 (530)
221 TIGR01420 pilT_fam pilus retra 97.1 0.0015 3.3E-08 63.0 7.5 110 192-312 122-232 (343)
222 PRK00771 signal recognition pa 97.1 0.0079 1.7E-07 59.6 12.6 29 191-219 94-122 (437)
223 cd03229 ABC_Class3 This class 97.1 0.0013 2.8E-08 57.2 6.2 128 191-324 25-174 (178)
224 cd03232 ABC_PDR_domain2 The pl 97.0 0.0024 5.2E-08 56.3 7.8 25 191-215 32-56 (192)
225 cd03237 ABC_RNaseL_inhibitor_d 97.0 0.0036 7.7E-08 57.5 9.2 26 191-216 24-49 (246)
226 cd03235 ABC_Metallic_Cations A 97.0 0.0036 7.9E-08 56.0 9.1 27 190-216 23-49 (213)
227 TIGR02858 spore_III_AA stage I 97.0 0.0016 3.6E-08 60.3 6.8 114 192-312 111-231 (270)
228 TIGR02902 spore_lonB ATP-depen 97.0 0.005 1.1E-07 63.0 11.0 47 168-216 64-110 (531)
229 cd03246 ABCC_Protease_Secretio 97.0 0.0027 5.9E-08 54.9 7.8 125 191-324 27-168 (173)
230 COG0464 SpoVK ATPases of the A 97.0 0.011 2.4E-07 60.2 13.5 128 191-341 275-424 (494)
231 PRK06762 hypothetical protein; 97.0 0.0037 8.1E-08 53.5 8.6 25 192-216 2-26 (166)
232 cd00983 recA RecA is a bacter 97.0 0.0011 2.5E-08 62.7 5.4 47 181-227 43-90 (325)
233 KOG2228 Origin recognition com 97.0 0.0073 1.6E-07 56.4 10.3 171 169-340 24-219 (408)
234 PRK05541 adenylylsulfate kinas 97.0 0.0011 2.4E-08 57.4 4.8 37 191-227 6-42 (176)
235 COG1066 Sms Predicted ATP-depe 96.9 0.002 4.2E-08 61.8 6.5 96 178-281 79-177 (456)
236 COG1126 GlnQ ABC-type polar am 96.9 0.006 1.3E-07 53.6 8.8 53 262-316 144-202 (240)
237 TIGR00416 sms DNA repair prote 96.9 0.0024 5.3E-08 63.8 7.4 50 178-227 80-129 (454)
238 PF08937 DUF1863: MTH538 TIR-l 96.9 0.00075 1.6E-08 55.4 3.2 69 12-81 1-87 (130)
239 COG0542 clpA ATP-binding subun 96.9 0.0027 6E-08 66.2 8.0 154 167-340 168-346 (786)
240 KOG0734 AAA+-type ATPase conta 96.9 0.0035 7.5E-08 61.8 8.0 150 169-340 304-484 (752)
241 TIGR02012 tigrfam_recA protein 96.9 0.0015 3.4E-08 61.7 5.6 47 181-227 43-90 (321)
242 cd03233 ABC_PDR_domain1 The pl 96.9 0.0042 9E-08 55.2 8.0 28 190-217 31-58 (202)
243 cd03215 ABC_Carb_Monos_II This 96.9 0.0038 8.2E-08 54.4 7.6 36 191-227 25-60 (182)
244 PF01583 APS_kinase: Adenylyls 96.9 0.0016 3.5E-08 54.8 5.0 36 192-227 2-37 (156)
245 PRK14722 flhF flagellar biosyn 96.9 0.014 3.1E-07 56.4 12.1 37 191-227 136-174 (374)
246 PRK11823 DNA repair protein Ra 96.9 0.0028 6.1E-08 63.3 7.4 49 179-227 67-115 (446)
247 PRK05800 cobU adenosylcobinami 96.9 0.00092 2E-08 57.6 3.5 23 194-216 3-25 (170)
248 cd01122 GP4d_helicase GP4d_hel 96.9 0.012 2.6E-07 54.8 11.2 38 190-227 28-66 (271)
249 PF13671 AAA_33: AAA domain; P 96.8 0.0054 1.2E-07 50.9 8.0 24 194-217 1-24 (143)
250 PRK07667 uridine kinase; Provi 96.8 0.0012 2.6E-08 58.2 4.1 37 183-219 8-44 (193)
251 COG4555 NatA ABC-type Na+ tran 96.8 0.0084 1.8E-07 52.1 8.9 29 190-218 26-54 (245)
252 PRK06696 uridine kinase; Valid 96.8 0.00055 1.2E-08 61.9 1.9 30 190-219 20-49 (223)
253 PRK13543 cytochrome c biogenes 96.8 0.0064 1.4E-07 54.5 8.8 27 190-216 35-61 (214)
254 PF13238 AAA_18: AAA domain; P 96.8 0.00095 2.1E-08 54.3 3.0 22 195-216 1-22 (129)
255 COG4088 Predicted nucleotide k 96.8 0.0075 1.6E-07 52.4 8.3 28 193-220 2-29 (261)
256 COG0396 sufC Cysteine desulfur 96.8 0.0055 1.2E-07 54.3 7.6 59 262-322 152-216 (251)
257 PRK13539 cytochrome c biogenes 96.8 0.0046 9.9E-08 55.2 7.4 27 190-216 26-52 (207)
258 COG4133 CcmA ABC-type transpor 96.8 0.0057 1.2E-07 52.5 7.4 29 191-219 27-55 (209)
259 COG1131 CcmA ABC-type multidru 96.8 0.006 1.3E-07 57.5 8.5 28 191-218 30-57 (293)
260 COG1119 ModF ABC-type molybden 96.8 0.0095 2.1E-07 53.3 9.1 24 192-215 57-80 (257)
261 PRK14249 phosphate ABC transpo 96.8 0.0055 1.2E-07 56.4 8.1 27 191-217 29-55 (251)
262 PRK14247 phosphate ABC transpo 96.8 0.0073 1.6E-07 55.6 8.8 26 191-216 28-53 (250)
263 PRK09354 recA recombinase A; P 96.8 0.0024 5.3E-08 61.0 5.7 47 181-227 48-95 (349)
264 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0053 1.2E-07 53.4 7.4 23 194-216 1-23 (183)
265 PRK11889 flhF flagellar biosyn 96.7 0.0099 2.1E-07 57.5 9.6 36 192-227 241-276 (436)
266 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0014 3.1E-08 58.6 3.9 23 192-214 29-51 (213)
267 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0043 9.4E-08 55.0 6.9 26 190-215 24-49 (200)
268 cd03289 ABCC_CFTR2 The CFTR su 96.7 0.01 2.2E-07 55.4 9.6 35 191-227 29-63 (275)
269 COG2274 SunT ABC-type bacterio 96.7 0.0032 7E-08 66.1 6.8 27 190-216 497-523 (709)
270 cd03263 ABC_subfamily_A The AB 96.7 0.0046 1E-07 55.6 7.1 26 191-216 27-52 (220)
271 PF10236 DAP3: Mitochondrial r 96.7 0.063 1.4E-06 51.0 15.0 49 321-369 258-307 (309)
272 PRK14273 phosphate ABC transpo 96.7 0.0079 1.7E-07 55.5 8.6 27 191-217 32-58 (254)
273 KOG1970 Checkpoint RAD17-RFC c 96.7 0.016 3.4E-07 57.6 10.8 40 177-216 90-134 (634)
274 cd03268 ABC_BcrA_bacitracin_re 96.7 0.0047 1E-07 55.1 6.9 26 191-216 25-50 (208)
275 cd03262 ABC_HisP_GlnQ_permease 96.7 0.006 1.3E-07 54.6 7.6 27 190-216 24-50 (213)
276 cd03251 ABCC_MsbA MsbA is an e 96.7 0.0058 1.2E-07 55.6 7.5 26 191-216 27-52 (234)
277 PF14532 Sigma54_activ_2: Sigm 96.7 0.00041 9E-09 57.6 -0.0 45 172-216 1-45 (138)
278 PRK14269 phosphate ABC transpo 96.7 0.014 2.9E-07 53.6 10.0 26 191-216 27-52 (246)
279 PF00485 PRK: Phosphoribulokin 96.7 0.0014 3.1E-08 57.8 3.4 26 194-219 1-26 (194)
280 TIGR01817 nifA Nif-specific re 96.7 0.0075 1.6E-07 62.0 9.0 50 167-216 194-243 (534)
281 TIGR01069 mutS2 MutS2 family p 96.7 0.0022 4.8E-08 68.2 5.2 24 192-215 322-345 (771)
282 KOG1969 DNA replication checkp 96.7 0.0064 1.4E-07 62.2 8.0 76 190-284 324-399 (877)
283 PF07726 AAA_3: ATPase family 96.6 0.0016 3.4E-08 52.6 3.0 29 195-223 2-30 (131)
284 COG1117 PstB ABC-type phosphat 96.6 0.017 3.6E-07 50.7 9.4 51 263-316 158-214 (253)
285 TIGR03522 GldA_ABC_ATP gliding 96.6 0.0062 1.3E-07 57.7 7.6 27 190-216 26-52 (301)
286 PRK11248 tauB taurine transpor 96.6 0.0069 1.5E-07 55.9 7.7 26 191-216 26-51 (255)
287 cd03213 ABCG_EPDR ABCG transpo 96.6 0.0083 1.8E-07 52.9 7.9 26 191-216 34-59 (194)
288 cd03278 ABC_SMC_barmotin Barmo 96.6 0.015 3.2E-07 51.4 9.5 22 194-215 24-45 (197)
289 cd03244 ABCC_MRP_domain2 Domai 96.6 0.01 2.2E-07 53.4 8.7 25 191-215 29-53 (221)
290 KOG1514 Origin recognition com 96.6 0.051 1.1E-06 55.6 14.1 197 167-374 394-624 (767)
291 PRK13537 nodulation ABC transp 96.6 0.0075 1.6E-07 57.3 8.0 26 191-216 32-57 (306)
292 CHL00206 ycf2 Ycf2; Provisiona 96.6 0.017 3.8E-07 65.4 11.6 27 190-216 1628-1654(2281)
293 PRK09544 znuC high-affinity zi 96.6 0.012 2.6E-07 54.2 9.1 26 191-216 29-54 (251)
294 KOG0728 26S proteasome regulat 96.6 0.012 2.5E-07 52.7 8.5 128 191-340 180-331 (404)
295 TIGR01188 drrA daunorubicin re 96.6 0.0052 1.1E-07 58.3 6.9 27 190-216 17-43 (302)
296 TIGR00972 3a0107s01c2 phosphat 96.6 0.0068 1.5E-07 55.6 7.5 27 190-216 25-51 (247)
297 PF03215 Rad17: Rad17 cell cyc 96.6 0.0078 1.7E-07 61.0 8.3 49 177-227 27-78 (519)
298 PF07728 AAA_5: AAA domain (dy 96.6 0.0025 5.5E-08 52.8 4.1 22 195-216 2-23 (139)
299 cd03264 ABC_drug_resistance_li 96.6 0.0088 1.9E-07 53.5 7.9 23 194-216 27-49 (211)
300 cd01125 repA Hexameric Replica 96.6 0.012 2.6E-07 53.7 8.9 24 194-217 3-26 (239)
301 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.6 0.012 2.5E-07 53.7 8.9 26 191-216 28-53 (238)
302 PRK13657 cyclic beta-1,2-gluca 96.6 0.0048 1E-07 64.3 7.1 26 191-216 360-385 (588)
303 PRK14237 phosphate transporter 96.6 0.0099 2.1E-07 55.3 8.5 27 190-216 44-70 (267)
304 PRK14259 phosphate ABC transpo 96.6 0.018 4E-07 53.5 10.3 27 190-216 37-63 (269)
305 TIGR03771 anch_rpt_ABC anchore 96.6 0.014 3E-07 52.7 9.2 26 191-216 5-30 (223)
306 TIGR00959 ffh signal recogniti 96.6 0.17 3.7E-06 50.2 17.4 27 191-217 98-124 (428)
307 PRK14974 cell division protein 96.6 0.019 4.2E-07 54.9 10.5 29 191-219 139-167 (336)
308 PRK10867 signal recognition pa 96.6 0.15 3.3E-06 50.5 17.1 29 191-219 99-127 (433)
309 PRK11174 cysteine/glutathione 96.6 0.0064 1.4E-07 63.3 7.9 36 190-227 374-409 (588)
310 PRK09493 glnQ glutamine ABC tr 96.6 0.0067 1.5E-07 55.4 7.2 27 190-216 25-51 (240)
311 COG4619 ABC-type uncharacteriz 96.6 0.031 6.6E-07 47.2 10.2 28 191-218 28-55 (223)
312 TIGR03740 galliderm_ABC gallid 96.6 0.013 2.8E-07 52.9 8.9 26 191-216 25-50 (223)
313 PRK05480 uridine/cytidine kina 96.6 0.0022 4.7E-08 57.3 3.8 26 191-216 5-30 (209)
314 TIGR02974 phageshock_pspF psp 96.6 0.0047 1E-07 59.2 6.3 46 171-216 1-46 (329)
315 cd03254 ABCC_Glucan_exporter_l 96.6 0.01 2.3E-07 53.7 8.4 26 191-216 28-53 (229)
316 COG2401 ABC-type ATPase fused 96.6 0.0049 1.1E-07 59.1 6.2 134 188-321 405-579 (593)
317 PRK15455 PrkA family serine pr 96.6 0.001 2.2E-08 67.0 1.7 51 169-219 76-130 (644)
318 PF00910 RNA_helicase: RNA hel 96.6 0.0015 3.3E-08 51.6 2.4 26 195-220 1-26 (107)
319 cd02019 NK Nucleoside/nucleoti 96.6 0.0019 4.2E-08 46.5 2.7 23 194-216 1-23 (69)
320 COG0467 RAD55 RecA-superfamily 96.5 0.0061 1.3E-07 56.4 6.8 45 183-227 14-58 (260)
321 cd03369 ABCC_NFT1 Domain 2 of 96.5 0.033 7.2E-07 49.6 11.3 26 191-216 33-58 (207)
322 PRK08233 hypothetical protein; 96.5 0.002 4.2E-08 56.1 3.3 26 192-217 3-28 (182)
323 cd03115 SRP The signal recogni 96.5 0.02 4.3E-07 49.4 9.6 26 194-219 2-27 (173)
324 cd03301 ABC_MalK_N The N-termi 96.5 0.0075 1.6E-07 54.0 7.2 26 191-216 25-50 (213)
325 cd03283 ABC_MutS-like MutS-lik 96.5 0.0092 2E-07 52.8 7.6 24 193-216 26-49 (199)
326 COG0563 Adk Adenylate kinase a 96.5 0.0051 1.1E-07 53.3 5.7 23 194-216 2-24 (178)
327 PRK13647 cbiO cobalt transport 96.5 0.013 2.8E-07 54.7 8.9 26 191-216 30-55 (274)
328 cd03240 ABC_Rad50 The catalyti 96.5 0.012 2.7E-07 52.3 8.3 58 265-325 132-196 (204)
329 KOG0736 Peroxisome assembly fa 96.5 0.023 5E-07 58.6 10.9 143 169-334 672-850 (953)
330 cd03300 ABC_PotA_N PotA is an 96.5 0.016 3.5E-07 52.6 9.1 26 191-216 25-50 (232)
331 COG0468 RecA RecA/RadA recombi 96.5 0.013 2.9E-07 54.3 8.5 47 182-228 50-96 (279)
332 TIGR00235 udk uridine kinase. 96.5 0.0025 5.4E-08 56.8 3.7 27 191-217 5-31 (207)
333 PRK09580 sufC cysteine desulfu 96.5 0.0087 1.9E-07 54.9 7.4 26 191-216 26-51 (248)
334 TIGR01277 thiQ thiamine ABC tr 96.5 0.012 2.5E-07 52.8 8.1 26 191-216 23-48 (213)
335 cd03253 ABCC_ATM1_transporter 96.5 0.016 3.4E-07 52.8 9.0 26 191-216 26-51 (236)
336 PRK00889 adenylylsulfate kinas 96.5 0.004 8.7E-08 53.9 4.8 36 191-226 3-38 (175)
337 TIGR02655 circ_KaiC circadian 96.5 0.0032 7E-08 63.7 4.8 50 178-227 249-298 (484)
338 PRK13650 cbiO cobalt transport 96.5 0.0089 1.9E-07 56.0 7.5 26 191-216 32-57 (279)
339 TIGR00708 cobA cob(I)alamin ad 96.5 0.013 2.7E-07 50.3 7.7 112 193-310 6-140 (173)
340 PRK14272 phosphate ABC transpo 96.5 0.02 4.3E-07 52.7 9.7 27 190-216 28-54 (252)
341 PRK04040 adenylate kinase; Pro 96.5 0.0028 6.1E-08 55.6 3.7 25 193-217 3-27 (188)
342 PRK03839 putative kinase; Prov 96.5 0.0023 5E-08 55.7 3.2 24 194-217 2-25 (180)
343 cd03236 ABC_RNaseL_inhibitor_d 96.4 0.014 3E-07 53.9 8.4 26 191-216 25-50 (255)
344 cd02027 APSK Adenosine 5'-phos 96.4 0.011 2.3E-07 49.8 7.0 25 194-218 1-25 (149)
345 PRK14253 phosphate ABC transpo 96.4 0.026 5.7E-07 51.8 10.3 28 190-217 27-54 (249)
346 KOG0727 26S proteasome regulat 96.4 0.053 1.2E-06 48.7 11.4 31 190-220 187-217 (408)
347 PRK05986 cob(I)alamin adenolsy 96.4 0.0073 1.6E-07 52.5 6.0 114 192-310 22-158 (191)
348 PTZ00301 uridine kinase; Provi 96.4 0.003 6.4E-08 56.3 3.7 28 192-219 3-30 (210)
349 TIGR03411 urea_trans_UrtD urea 96.4 0.022 4.8E-07 52.0 9.7 26 191-216 27-52 (242)
350 PF08433 KTI12: Chromatin asso 96.4 0.012 2.6E-07 54.6 7.8 27 193-219 2-28 (270)
351 PRK13536 nodulation factor exp 96.4 0.017 3.6E-07 55.7 9.1 27 190-216 65-91 (340)
352 smart00534 MUTSac ATPase domai 96.4 0.0013 2.8E-08 57.6 1.4 21 194-214 1-21 (185)
353 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0051 1.1E-07 56.6 5.4 25 195-219 2-26 (249)
354 cd01129 PulE-GspE PulE/GspE Th 96.4 0.01 2.2E-07 55.0 7.3 103 192-309 80-183 (264)
355 PRK05703 flhF flagellar biosyn 96.4 0.053 1.2E-06 53.8 12.8 36 192-227 221-258 (424)
356 cd03248 ABCC_TAP TAP, the Tran 96.4 0.013 2.7E-07 53.1 7.8 26 191-216 39-64 (226)
357 TIGR03499 FlhF flagellar biosy 96.4 0.018 3.8E-07 54.0 8.9 37 191-227 193-231 (282)
358 PRK12726 flagellar biosynthesi 96.4 0.027 5.9E-07 54.3 10.2 37 191-227 205-241 (407)
359 PRK14265 phosphate ABC transpo 96.4 0.015 3.2E-07 54.3 8.4 60 262-325 169-234 (274)
360 PRK00131 aroK shikimate kinase 96.4 0.0029 6.2E-08 54.5 3.3 26 191-216 3-28 (175)
361 PRK13636 cbiO cobalt transport 96.4 0.0091 2E-07 56.0 6.9 26 191-216 31-56 (283)
362 PRK08533 flagellar accessory p 96.4 0.01 2.2E-07 53.9 7.0 50 178-227 10-59 (230)
363 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.014 3E-07 56.6 8.2 101 191-308 61-166 (362)
364 PRK13409 putative ATPase RIL; 96.4 0.017 3.7E-07 59.9 9.3 133 191-326 364-529 (590)
365 KOG0735 AAA+-type ATPase [Post 96.4 0.044 9.6E-07 56.2 11.8 150 192-366 701-871 (952)
366 PRK06217 hypothetical protein; 96.4 0.015 3.2E-07 50.7 7.7 23 194-216 3-25 (183)
367 KOG0651 26S proteasome regulat 96.4 0.02 4.3E-07 53.0 8.5 30 191-220 165-194 (388)
368 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.0089 1.9E-07 54.5 6.5 48 180-227 9-56 (237)
369 PF13604 AAA_30: AAA domain; P 96.4 0.017 3.6E-07 51.1 8.0 35 192-226 18-52 (196)
370 PRK13545 tagH teichoic acids e 96.3 0.016 3.5E-07 58.4 8.7 26 191-216 49-74 (549)
371 PRK14236 phosphate transporter 96.3 0.017 3.6E-07 54.0 8.4 26 191-216 50-75 (272)
372 PRK11176 lipid transporter ATP 96.3 0.0089 1.9E-07 62.2 7.3 26 191-216 368-393 (582)
373 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.0033 7.2E-08 56.6 3.5 24 191-214 30-53 (222)
374 cd03250 ABCC_MRP_domain1 Domai 96.3 0.032 6.9E-07 49.5 9.8 27 190-216 29-55 (204)
375 KOG2035 Replication factor C, 96.3 0.0048 1E-07 56.0 4.4 183 170-367 14-224 (351)
376 PRK14251 phosphate ABC transpo 96.3 0.01 2.3E-07 54.5 6.9 26 191-216 29-54 (251)
377 PRK14263 phosphate ABC transpo 96.3 0.02 4.3E-07 53.1 8.7 27 190-216 32-58 (261)
378 PRK03846 adenylylsulfate kinas 96.3 0.0059 1.3E-07 54.0 5.0 37 191-227 23-59 (198)
379 PRK00625 shikimate kinase; Pro 96.3 0.003 6.5E-08 54.5 3.0 24 194-217 2-25 (173)
380 PRK12724 flagellar biosynthesi 96.3 0.042 9.1E-07 53.8 11.1 25 192-216 223-247 (432)
381 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0034 7.4E-08 54.8 3.4 26 191-216 2-27 (188)
382 KOG0729 26S proteasome regulat 96.3 0.013 2.8E-07 52.9 6.9 33 190-227 209-241 (435)
383 PRK11608 pspF phage shock prot 96.3 0.0054 1.2E-07 58.8 4.9 47 169-215 6-52 (326)
384 KOG0652 26S proteasome regulat 96.3 0.03 6.4E-07 50.5 9.1 140 191-356 204-372 (424)
385 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0054 1.2E-07 56.7 4.7 45 183-227 27-71 (259)
386 PRK12723 flagellar biosynthesi 96.3 0.031 6.8E-07 54.5 10.0 27 191-217 173-199 (388)
387 KOG0062 ATPase component of AB 96.3 0.0072 1.6E-07 59.5 5.5 123 192-316 106-261 (582)
388 COG4618 ArpD ABC-type protease 96.2 0.02 4.2E-07 56.5 8.3 24 191-214 361-384 (580)
389 PLN03211 ABC transporter G-25; 96.2 0.035 7.5E-07 58.4 10.9 27 191-217 93-119 (659)
390 COG1122 CbiO ABC-type cobalt t 96.2 0.015 3.2E-07 52.8 7.1 26 191-216 29-54 (235)
391 PF08423 Rad51: Rad51; InterP 96.2 0.0034 7.3E-08 57.9 3.0 48 180-227 26-79 (256)
392 TIGR00968 3a0106s01 sulfate AB 96.2 0.02 4.2E-07 52.3 8.0 26 190-215 24-49 (237)
393 cd03243 ABC_MutS_homologs The 96.2 0.0035 7.5E-08 55.7 2.9 22 193-214 30-51 (202)
394 TIGR02868 CydC thiol reductant 96.2 0.011 2.3E-07 60.9 6.9 27 190-216 359-385 (529)
395 PRK06547 hypothetical protein; 96.2 0.0047 1E-07 53.3 3.6 26 191-216 14-39 (172)
396 TIGR02203 MsbA_lipidA lipid A 96.2 0.0088 1.9E-07 62.1 6.3 27 190-216 356-382 (571)
397 COG3910 Predicted ATPase [Gene 96.2 0.044 9.5E-07 47.2 9.2 24 192-215 37-60 (233)
398 cd00227 CPT Chloramphenicol (C 96.2 0.0044 9.5E-08 53.7 3.4 25 193-217 3-27 (175)
399 TIGR03375 type_I_sec_LssB type 96.2 0.01 2.2E-07 63.1 6.9 26 191-216 490-515 (694)
400 TIGR02314 ABC_MetN D-methionin 96.2 0.0069 1.5E-07 58.3 5.1 27 190-216 29-55 (343)
401 cd03285 ABC_MSH2_euk MutS2 hom 96.2 0.0038 8.3E-08 56.3 3.1 24 191-214 29-52 (222)
402 COG0572 Udk Uridine kinase [Nu 96.2 0.0059 1.3E-07 54.0 4.1 30 190-219 6-35 (218)
403 TIGR02857 CydD thiol reductant 96.2 0.019 4.2E-07 59.0 8.6 26 190-215 346-371 (529)
404 PRK05022 anaerobic nitric oxid 96.2 0.0086 1.9E-07 61.1 5.9 49 168-216 186-234 (509)
405 PRK13531 regulatory ATPase Rav 96.2 0.004 8.6E-08 61.8 3.3 47 168-218 19-65 (498)
406 PRK07132 DNA polymerase III su 96.2 0.15 3.2E-06 48.1 13.6 130 192-339 18-161 (299)
407 PRK15429 formate hydrogenlyase 96.2 0.011 2.4E-07 62.7 6.8 49 168-216 375-423 (686)
408 PRK15064 ABC transporter ATP-b 96.1 0.031 6.7E-07 57.5 10.0 26 191-216 26-51 (530)
409 cd02028 UMPK_like Uridine mono 96.1 0.0064 1.4E-07 52.9 4.2 25 194-218 1-25 (179)
410 PRK11160 cysteine/glutathione 96.1 0.015 3.3E-07 60.3 7.7 27 190-216 364-390 (574)
411 PF03266 NTPase_1: NTPase; In 96.1 0.0044 9.6E-08 53.2 3.1 24 195-218 2-25 (168)
412 COG4586 ABC-type uncharacteriz 96.1 0.019 4.2E-07 52.2 7.1 49 262-311 164-218 (325)
413 PF06745 KaiC: KaiC; InterPro 96.1 0.0068 1.5E-07 54.8 4.4 48 180-227 7-55 (226)
414 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.0096 2.1E-07 57.6 5.6 96 192-293 134-233 (358)
415 PRK13947 shikimate kinase; Pro 96.1 0.0043 9.2E-08 53.4 2.9 25 194-218 3-27 (171)
416 TIGR01650 PD_CobS cobaltochela 96.1 0.036 7.7E-07 52.5 9.2 47 170-220 46-92 (327)
417 PRK09536 btuD corrinoid ABC tr 96.1 0.028 6.1E-07 55.3 8.8 27 190-216 27-53 (402)
418 PRK10636 putative ABC transpor 96.1 0.038 8.3E-07 58.0 10.3 26 191-216 26-51 (638)
419 PRK13409 putative ATPase RIL; 96.1 0.026 5.7E-07 58.5 8.9 26 191-216 98-123 (590)
420 TIGR01425 SRP54_euk signal rec 96.1 0.47 1E-05 46.9 17.1 29 191-219 99-127 (429)
421 cd03288 ABCC_SUR2 The SUR doma 96.1 0.042 9.2E-07 50.7 9.6 26 191-216 46-71 (257)
422 PRK15439 autoinducer 2 ABC tra 96.1 0.029 6.2E-07 57.4 9.1 26 191-216 36-61 (510)
423 PRK10790 putative multidrug tr 96.0 0.016 3.4E-07 60.5 7.3 27 190-216 365-391 (592)
424 TIGR03600 phage_DnaB phage rep 96.0 0.079 1.7E-06 52.7 12.0 73 171-250 174-247 (421)
425 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.0086 1.9E-07 54.3 4.7 47 181-227 9-55 (229)
426 TIGR02322 phosphon_PhnN phosph 96.0 0.0052 1.1E-07 53.4 3.1 25 193-217 2-26 (179)
427 PRK00279 adk adenylate kinase; 96.0 0.017 3.6E-07 51.9 6.4 23 194-216 2-24 (215)
428 cd01124 KaiC KaiC is a circadi 96.0 0.015 3.2E-07 50.7 6.0 33 195-227 2-34 (187)
429 PF00625 Guanylate_kin: Guanyl 96.0 0.0079 1.7E-07 52.5 4.2 36 192-227 2-37 (183)
430 TIGR00150 HI0065_YjeE ATPase, 96.0 0.0029 6.2E-08 51.8 1.3 26 191-216 21-46 (133)
431 COG3854 SpoIIIAA ncharacterize 96.0 0.02 4.4E-07 50.7 6.5 107 194-310 139-253 (308)
432 cd02023 UMPK Uridine monophosp 96.0 0.0047 1E-07 54.7 2.7 23 194-216 1-23 (198)
433 cd02025 PanK Pantothenate kina 96.0 0.0045 9.8E-08 55.7 2.7 25 194-218 1-25 (220)
434 COG0465 HflB ATP-dependent Zn 96.0 0.019 4.1E-07 58.5 7.2 172 168-367 149-357 (596)
435 KOG2004 Mitochondrial ATP-depe 96.0 0.0028 6E-08 64.6 1.4 51 170-220 412-466 (906)
436 PRK10938 putative molybdenum t 96.0 0.027 5.8E-07 57.3 8.5 26 191-216 28-53 (490)
437 KOG0066 eIF2-interacting prote 96.0 0.068 1.5E-06 51.8 10.3 134 191-327 612-777 (807)
438 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.016 3.5E-07 51.5 5.9 24 191-214 28-51 (204)
439 TIGR00958 3a01208 Conjugate Tr 96.0 0.036 7.7E-07 59.1 9.6 27 190-216 505-531 (711)
440 PRK14257 phosphate ABC transpo 96.0 0.028 6E-07 53.9 8.0 26 191-216 107-132 (329)
441 PRK05973 replicative DNA helic 96.0 0.022 4.8E-07 51.6 6.8 38 190-227 62-99 (237)
442 TIGR01846 type_I_sec_HlyB type 95.9 0.011 2.4E-07 62.9 5.7 26 191-216 482-507 (694)
443 TIGR03575 selen_PSTK_euk L-ser 95.9 0.026 5.6E-07 54.0 7.6 23 195-217 2-24 (340)
444 COG4172 ABC-type uncharacteriz 95.9 0.059 1.3E-06 51.8 9.7 145 190-336 311-515 (534)
445 TIGR03796 NHPM_micro_ABC1 NHPM 95.9 0.021 4.5E-07 61.0 7.7 27 190-216 503-529 (710)
446 PRK11147 ABC transporter ATPas 95.9 0.043 9.4E-07 57.7 10.0 26 191-216 28-53 (635)
447 cd03299 ABC_ModC_like Archeal 95.9 0.042 9E-07 50.0 8.7 25 191-215 24-48 (235)
448 cd02021 GntK Gluconate kinase 95.9 0.0053 1.2E-07 51.6 2.5 23 194-216 1-23 (150)
449 COG3638 ABC-type phosphate/pho 95.9 0.034 7.3E-07 49.6 7.5 39 173-215 15-53 (258)
450 PF00406 ADK: Adenylate kinase 95.9 0.0081 1.8E-07 50.6 3.6 20 197-216 1-20 (151)
451 cd02020 CMPK Cytidine monophos 95.9 0.0058 1.3E-07 50.9 2.7 23 194-216 1-23 (147)
452 cd00984 DnaB_C DnaB helicase C 95.9 0.069 1.5E-06 48.7 10.1 40 188-227 9-49 (242)
453 PTZ00088 adenylate kinase 1; P 95.9 0.022 4.8E-07 51.5 6.6 22 195-216 9-30 (229)
454 PRK15439 autoinducer 2 ABC tra 95.9 0.039 8.4E-07 56.4 9.1 26 191-216 288-313 (510)
455 PRK11000 maltose/maltodextrin 95.9 0.02 4.3E-07 55.9 6.6 26 191-216 28-53 (369)
456 TIGR01192 chvA glucan exporter 95.9 0.024 5.3E-07 59.0 7.7 27 190-216 359-385 (585)
457 COG1102 Cmk Cytidylate kinase 95.9 0.0066 1.4E-07 50.7 2.8 23 194-216 2-24 (179)
458 cd02024 NRK1 Nicotinamide ribo 95.9 0.0056 1.2E-07 53.4 2.5 23 194-216 1-23 (187)
459 PF03205 MobB: Molybdopterin g 95.9 0.012 2.5E-07 49.0 4.3 35 193-227 1-36 (140)
460 TIGR02525 plasmid_TraJ plasmid 95.8 0.015 3.2E-07 56.4 5.6 106 193-309 150-259 (372)
461 PRK09270 nucleoside triphospha 95.8 0.0093 2E-07 54.1 4.0 30 190-219 31-60 (229)
462 PRK13949 shikimate kinase; Pro 95.8 0.0067 1.4E-07 52.2 2.9 24 194-217 3-26 (169)
463 COG0529 CysC Adenylylsulfate k 95.8 0.014 3.1E-07 49.5 4.7 37 191-227 22-58 (197)
464 COG1123 ATPase components of v 95.8 0.024 5.3E-07 56.9 7.2 54 262-316 162-221 (539)
465 TIGR01351 adk adenylate kinase 95.8 0.022 4.8E-07 50.8 6.4 22 195-216 2-23 (210)
466 TIGR01193 bacteriocin_ABC ABC- 95.8 0.021 4.6E-07 60.9 7.2 27 190-216 498-524 (708)
467 PRK10751 molybdopterin-guanine 95.8 0.017 3.7E-07 49.6 5.2 29 191-219 5-33 (173)
468 TIGR00064 ftsY signal recognit 95.8 0.015 3.2E-07 54.1 5.3 37 191-227 71-107 (272)
469 KOG1051 Chaperone HSP104 and r 95.8 0.058 1.3E-06 57.5 10.1 103 170-284 563-672 (898)
470 COG1936 Predicted nucleotide k 95.8 0.0069 1.5E-07 51.3 2.7 20 194-213 2-21 (180)
471 PRK10982 galactose/methyl gala 95.8 0.043 9.2E-07 55.9 9.0 60 262-324 399-464 (491)
472 PRK04328 hypothetical protein; 95.8 0.013 2.8E-07 53.9 4.7 48 180-227 11-58 (249)
473 PRK12727 flagellar biosynthesi 95.8 0.03 6.6E-07 56.3 7.6 29 191-219 349-377 (559)
474 KOG0927 Predicted transporter 95.8 0.024 5.1E-07 56.3 6.7 51 262-316 229-285 (614)
475 PRK14738 gmk guanylate kinase; 95.8 0.0091 2E-07 53.2 3.6 27 189-215 10-36 (206)
476 PF03308 ArgK: ArgK protein; 95.8 0.0094 2E-07 54.1 3.6 30 190-219 27-56 (266)
477 TIGR03258 PhnT 2-aminoethylpho 95.8 0.037 8.1E-07 53.8 8.1 25 191-215 30-54 (362)
478 PRK08506 replicative DNA helic 95.8 0.11 2.5E-06 52.3 11.8 73 171-250 172-244 (472)
479 PTZ00494 tuzin-like protein; P 95.8 0.19 4.2E-06 49.2 12.5 207 119-339 301-543 (664)
480 PRK11819 putative ABC transpor 95.8 0.06 1.3E-06 55.7 10.1 27 190-216 31-57 (556)
481 PRK04301 radA DNA repair and r 95.8 0.017 3.7E-07 55.1 5.6 48 180-227 90-143 (317)
482 PRK13948 shikimate kinase; Pro 95.7 0.0087 1.9E-07 52.1 3.3 27 191-217 9-35 (182)
483 PF00154 RecA: recA bacterial 95.7 0.03 6.5E-07 53.0 7.0 85 190-283 51-142 (322)
484 cd00464 SK Shikimate kinase (S 95.7 0.0081 1.7E-07 50.6 3.0 22 195-216 2-23 (154)
485 cd00071 GMPK Guanosine monopho 95.7 0.0067 1.4E-07 50.2 2.4 26 194-219 1-26 (137)
486 cd01130 VirB11-like_ATPase Typ 95.7 0.0048 1E-07 54.1 1.6 91 191-289 24-117 (186)
487 cd03227 ABC_Class2 ABC-type Cl 95.7 0.026 5.6E-07 48.1 6.1 22 193-214 22-43 (162)
488 COG1124 DppF ABC-type dipeptid 95.7 0.0094 2E-07 53.3 3.3 25 191-215 32-56 (252)
489 PRK10789 putative multidrug tr 95.7 0.03 6.5E-07 58.1 7.6 27 190-216 339-365 (569)
490 PF13481 AAA_25: AAA domain; P 95.7 0.036 7.7E-07 48.6 7.1 27 192-218 32-58 (193)
491 PRK12339 2-phosphoglycerate ki 95.7 0.0097 2.1E-07 52.5 3.4 25 192-216 3-27 (197)
492 TIGR02788 VirB11 P-type DNA tr 95.7 0.0076 1.6E-07 57.3 2.8 109 191-311 143-254 (308)
493 cd03284 ABC_MutS1 MutS1 homolo 95.7 0.036 7.9E-07 49.7 7.1 22 193-214 31-52 (216)
494 PF13245 AAA_19: Part of AAA d 95.7 0.029 6.3E-07 41.2 5.3 25 192-216 10-34 (76)
495 PRK15453 phosphoribulokinase; 95.6 0.018 3.8E-07 53.2 5.0 28 191-218 4-31 (290)
496 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.03 6.5E-07 50.5 6.5 47 181-227 5-51 (224)
497 PRK00300 gmk guanylate kinase; 95.6 0.0097 2.1E-07 52.9 3.2 26 191-216 4-29 (205)
498 TIGR00455 apsK adenylylsulfate 95.6 0.035 7.7E-07 48.4 6.8 28 191-218 17-44 (184)
499 TIGR01313 therm_gnt_kin carboh 95.6 0.0072 1.6E-07 51.6 2.3 22 195-216 1-22 (163)
500 PRK14530 adenylate kinase; Pro 95.6 0.0095 2.1E-07 53.5 3.2 24 193-216 4-27 (215)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4e-76 Score=644.55 Aligned_cols=405 Identities=38% Similarity=0.567 Sum_probs=356.9
Q ss_pred CCCC-CCCCCCcccEEecCccccccCcchHHHHHHHhhCCCceeeeCCCCCCCcchHHHHHHhhhcceeEEEeccccccc
Q 046970 1 MASS-SLATKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDEEANRGDEISLALLNAIEGSKISIVIFSKNYASS 79 (420)
Q Consensus 1 ~~~s-~~~~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s 79 (420)
|||| |+++.|+|||||||||+|+|++|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++||+|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 6665 456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-----------------eeEeeeeccCccccccccCcchHHHHHHHHhhccchhhHHhHHHHhhhhccccccCCCCCc
Q 046970 80 SG-----------------AWMNFFLSCSSSDVRNQTGSFGDAFVKLEKQFEELPEKVHKWSGALTEASNISGWDSTNMR 142 (420)
Q Consensus 80 ~w-----------------~v~pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 142 (420)
+| .|+||||+|+|++||+|+|.|+++|.++..+... +++++||+||++++++.|+++.++.
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~--~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTE--DEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccch--hHHHHHHHHHHHHhCcCceecCCCC
Confidence 99 7999999999999999999999999998876543 7899999999999999999998888
Q ss_pred hhhHHHHHHHHHHHhhhcccccccCCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccc
Q 046970 143 PEARLVDEIVKDIMKKLKDKLLSRDFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG 222 (420)
Q Consensus 143 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 222 (420)
.|+++|++|+++|..+++.+++. ..+++|||+.++++|..+|..+.+++++|+|+||||+||||||+++|+++..+|++
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~-~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSN-DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCc-ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 89999999999999999888776 78899999999999999998777889999999999999999999999999999999
Q ss_pred eEEEEec--ccc---cc------ccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHHHHHHHh
Q 046970 223 ECFITNV--REE---SE------RVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQLIFLV 291 (420)
Q Consensus 223 ~~~v~~~--~~~---~~------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~ 291 (420)
.+|+.+. ... .. ......++.+++..+..... . .......+++++.++|+||||||||+..+++.+.
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~-~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-I-KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-c-ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 9998642 110 00 01123455566666544321 1 1111467888999999999999999999999999
Q ss_pred cCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 292 GGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 292 ~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
....++++|++||||||+..++...+..++|+++.|+.++|++||+++||+...+++++.+++++|+++|+|+||||+++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 88888899999999999999988777889999999999999999999999887777888999999999999999999999
Q ss_pred HHHhcCCChhHHHhH--------------hhhcccccCcc-CCcccCcchhHHH
Q 046970 372 GSFFYRKSVKPEKQC--------------CFNRGCRLLVA-EPRYIFLPLSFMF 410 (420)
Q Consensus 372 ~~~L~~~~~~~~~~~--------------~~~~~~~~l~~-~~~~~~l~~~~~~ 410 (420)
|++|++++..+|..+ +++.+|+.|++ +++.+|+++||||
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff 449 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLF 449 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhc
Confidence 999999999999876 34567788866 5889999999986
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1e-39 Score=274.44 Aligned_cols=147 Identities=24% Similarity=0.368 Sum_probs=134.0
Q ss_pred CCCCCCCCCcccEEecCccccccCcchHHHHHHHhhCCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEecccccccC
Q 046970 2 ASSSLATKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASSS 80 (420)
Q Consensus 2 ~~s~~~~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~ 80 (420)
.+|||+...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.
T Consensus 17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~ 96 (187)
T PLN03194 17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY 96 (187)
T ss_pred cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence 478888999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred C-------------eeEeeeeccCccccccc-cCcchHHHHHHHHhhccchhhHHhHHHHhhhhccccccCCCC-Cchhh
Q 046970 81 G-------------AWMNFFLSCSSSDVRNQ-TGSFGDAFVKLEKQFEELPEKVHKWSGALTEASNISGWDSTN-MRPEA 145 (420)
Q Consensus 81 w-------------~v~pvfy~v~ps~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~e~ 145 (420)
| .|+||||+|+|++||+| .|.. ..+++++||.||.+++++.|+++.. ..+|+
T Consensus 97 WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~ 163 (187)
T PLN03194 97 FCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWS 163 (187)
T ss_pred hHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCCCCCHH
Confidence 9 69999999999999997 4431 2368999999999999999987764 34599
Q ss_pred HHHHHHHHHHHhhhcc
Q 046970 146 RLVDEIVKDIMKKLKD 161 (420)
Q Consensus 146 ~~i~~i~~~v~~~l~~ 161 (420)
+++++|++.|.+.|..
T Consensus 164 e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 164 EVVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888643
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-37 Score=322.36 Aligned_cols=242 Identities=26% Similarity=0.330 Sum_probs=209.3
Q ss_pred ccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHH---hhccccceEEEEeccccccccCHHHHHHHHHHH
Q 046970 172 VGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQ---ISSEFEGECFITNVREESERVGLVHLRERVLSE 248 (420)
Q Consensus 172 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~ 248 (420)
||.+..++++.+.|..+. .++++|+||||+||||||++++++ +..+|+.++|+. ++..+....++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999997654 389999999999999999999985 568899999999 88899999999999998
Q ss_pred HhhccccCCCC--Cc-hHHHHHHhcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhh-cCCCeEEEe
Q 046970 249 ILEENLKIGTL--NL-PEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE-CEVDSIYEV 324 (420)
Q Consensus 249 l~~~~~~~~~~--~~-~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~-~~~~~~~~l 324 (420)
+.......... +. ...+.+.|.++|+||||||||+..+|+.+...++....||+|++|||+..++.. ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 87754433222 33 888999999999999999999999999999998877788999999999999988 778899999
Q ss_pred CCCCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCCCh-hHHHhHhhhcccccCcc-----
Q 046970 325 EGLNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRKSV-KPEKQCCFNRGCRLLVA----- 397 (420)
Q Consensus 325 ~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~-~~~~~~~~~~~~~~l~~----- 397 (420)
+.|+.+|||.||++.+|... ...+...+++++++++|+|+|||+.++|..|+.+.. .+|.+++..+.......
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 333447899999999999999999999999999874 58999987764441111
Q ss_pred -------CCcccCcchhHHHHHHHhhccC
Q 046970 398 -------EPRYIFLPLSFMFLVTLVALFD 419 (420)
Q Consensus 398 -------~~~~~~l~~~~~~~~~~~~~f~ 419 (420)
..+|-+|+..++.||+|||+||
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFP 423 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFP 423 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCC
Confidence 4568899988999999999997
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.3e-37 Score=288.09 Aligned_cols=242 Identities=32% Similarity=0.440 Sum_probs=182.4
Q ss_pred ccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHH--hhccccceEEEEeccccccccCHHHHHHHHHHHHhh
Q 046970 174 VNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQ--ISSEFEGECFITNVREESERVGLVHLRERVLSEILE 251 (420)
Q Consensus 174 R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~ 251 (420)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ ++.+|+.++|+. .+.......+...++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 678899999999876678999999999999999999999988 788999999998 44455568888888888877
Q ss_pred ccccC-CCC--Cc-hHHHHHHhcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCC-CeEEEeCC
Q 046970 252 ENLKI-GTL--NL-PEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEV-DSIYEVEG 326 (420)
Q Consensus 252 ~~~~~-~~~--~~-~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~-~~~~~l~~ 326 (420)
..... ... +. ...+.+.|.++++|||||||++...++.+...++....|++||||||+..++...+. ...++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 64433 222 22 788999999999999999999999998888777766779999999999988766543 67899999
Q ss_pred CCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCC-ChhHHHhHhhhcccccCcc-------
Q 046970 327 LNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRK-SVKPEKQCCFNRGCRLLVA------- 397 (420)
Q Consensus 327 L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~------- 397 (420)
|+.++|++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|.+++.++.......
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997654 2334445678999999999999999999999543 5678888765543222111
Q ss_pred ----CCcccCcchhHHHHHHHhhccC
Q 046970 398 ----EPRYIFLPLSFMFLVTLVALFD 419 (420)
Q Consensus 398 ----~~~~~~l~~~~~~~~~~~~~f~ 419 (420)
+..+--|+-.++.||.|||+|+
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~ 262 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFP 262 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSG
T ss_pred cccceechhcCCccHHHHHhhCcCCC
Confidence 2345577889999999999996
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.71 E-value=1.4e-18 Score=145.73 Aligned_cols=115 Identities=32% Similarity=0.476 Sum_probs=96.1
Q ss_pred EEecCccccccCcchHHHHHHHhhC--CCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEecccccccCC---------
Q 046970 14 VFLSFRGEDTRDNFTSHLFAALRQK--RIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASSSG--------- 81 (420)
Q Consensus 14 vfis~~~~d~~~~~~~~L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w--------- 81 (420)
|||||++.+.+..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|+|++|+.|.|
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444556999999999999 99999999 99999999999999999999999999999999999
Q ss_pred ----------eeEeeeeccCccccc-cccCcchHHHHHHHHhhccc--hhhHHhHHHHhh
Q 046970 82 ----------AWMNFFLSCSSSDVR-NQTGSFGDAFVKLEKQFEEL--PEKVHKWSGALT 128 (420)
Q Consensus 82 ----------~v~pvfy~v~ps~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 128 (420)
.|+|+||++.+++++ .+.+.+...+.......+.. ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 899999999999999 68887777776655444432 356778887653
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.69 E-value=5.7e-17 Score=135.91 Aligned_cols=119 Identities=37% Similarity=0.574 Sum_probs=99.2
Q ss_pred cccEEecCcc-ccccCcchHHHHHHHhhCCCceeeeCCCCCCCcchHHHHHHhhhcceeEEEecccccccCC--------
Q 046970 11 RYDVFLSFRG-EDTRDNFTSHLFAALRQKRIKIFIDEEANRGDEISLALLNAIEGSKISIVIFSKNYASSSG-------- 81 (420)
Q Consensus 11 ~~dvfis~~~-~d~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w-------- 81 (420)
.|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+|++|..|.|
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 4566789999999999999999999844333333 39999999999999999999999999
Q ss_pred ----------eeEeeeeccCccccccccCcchHHHHHHHHhhccchhhHHhHHHHhhhhc
Q 046970 82 ----------AWMNFFLSCSSSDVRNQTGSFGDAFVKLEKQFEELPEKVHKWSGALTEAS 131 (420)
Q Consensus 82 ----------~v~pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 131 (420)
.|+||+|+..|..+..+.+.+...+..+..++.+.... ..|+..+..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 89999999999889999999999998876666552222 67888776553
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.39 E-value=5.7e-13 Score=121.26 Aligned_cols=195 Identities=21% Similarity=0.227 Sum_probs=100.7
Q ss_pred cccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHH------HHH
Q 046970 171 SVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHL------RER 244 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l------~~~ 244 (420)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.........+|+....... ......+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 799999999999998753 3578999999999999999999998754333444444222211 1111111 111
Q ss_pred HHHHHhhccccC----------CC-CCchHHHHHHhcC--CeEEEEEeCCCCHH-----------HHHHHhcCCCCCCCC
Q 046970 245 VLSEILEENLKI----------GT-LNLPEYIKERLQQ--MKVFIVLDDVNKPE-----------QLIFLVGGLDRFGPR 300 (420)
Q Consensus 245 ll~~l~~~~~~~----------~~-~~~~~~l~~~l~~--~~~LlVLDdv~~~~-----------~l~~l~~~~~~~~~g 300 (420)
+...+....... .. ......+.+.+.. ++++||+||+.... .+..++.......+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111121111110 01 1113333343432 45999999985444 123333332222233
Q ss_pred cEEEeecCChhhhhh--------cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 301 SRIIVTTRDKQVFDE--------CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 301 ~~IIiTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
+ +++++....+... .+....+.|++|+.+++++++....-....- +...+..++|+..+||+|..|..
T Consensus 158 ~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 S-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred e-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4 4444444433322 2334459999999999999998865322111 11235578999999999998875
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.32 E-value=4.2e-13 Score=105.91 Aligned_cols=74 Identities=31% Similarity=0.490 Sum_probs=65.2
Q ss_pred EEecCccccccCcchHHHHHHHhhCCCceeeeCCCCCCCcchHHHHHHhhhcceeEEEecccccccCC------------
Q 046970 14 VFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDEEANRGDEISLALLNAIEGSKISIVIFSKNYASSSG------------ 81 (420)
Q Consensus 14 vfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w------------ 81 (420)
|||||+++| ..++++|.+.|+++|+++|.|.++.+|+.+...|.++|++|+..|+++|++|..|.|
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~~~ 78 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWKRG 78 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHCTS
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHHCC
Confidence 899999999 569999999999999999999989999999999999999999999999999999999
Q ss_pred -eeEeeeec
Q 046970 82 -AWMNFFLS 89 (420)
Q Consensus 82 -~v~pvfy~ 89 (420)
.|+||..+
T Consensus 79 ~~iipv~~~ 87 (102)
T PF13676_consen 79 KPIIPVRLD 87 (102)
T ss_dssp ESEEEEECS
T ss_pred CEEEEEEEC
Confidence 69999844
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=6e-11 Score=117.00 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=119.7
Q ss_pred CCCCcccccccceeeecccccC--CCCceEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEEeccccccccCHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG--LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFITNVREESERVGLVHLR 242 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~l~ 242 (420)
.++.++||+.++++|...+... ......+.|+|++|+|||++++.+++.+..... ..+++. . ....+...+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCHHHHH
Confidence 5578999999999999988432 233456789999999999999999998765542 233333 2 2223455677
Q ss_pred HHHHHHHhhccccCC--CCCc-hHHHHHHhc--CCeEEEEEeCCCCHH------HHHHHhcCCCCCC-CCcEEEeecCCh
Q 046970 243 ERVLSEILEENLKIG--TLNL-PEYIKERLQ--QMKVFIVLDDVNKPE------QLIFLVGGLDRFG-PRSRIIVTTRDK 310 (420)
Q Consensus 243 ~~ll~~l~~~~~~~~--~~~~-~~~l~~~l~--~~~~LlVLDdv~~~~------~l~~l~~~~~~~~-~g~~IIiTtR~~ 310 (420)
..++.++........ +... ...+.+.+. +++.+||||+++... .+..+........ ....+|.++.+.
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 777777765221111 1122 455555554 457899999997643 3444443322221 123356555544
Q ss_pred hhhhhc-------CCCeEEEeCCCCHHHHHHHHHhcccC---CCCCchhHHHHHHHHHHH----hcCChHHHHHHHH
Q 046970 311 QVFDEC-------EVDSIYEVEGLNKDESLELFSNFAFR---QKICPKDFLVLSKRVVDY----ANGNPLALKVLGS 373 (420)
Q Consensus 311 ~~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~a~~---~~~~~~~~~~~~~~i~~~----~~G~PLal~~~~~ 373 (420)
.+.... -....+.+++++.++..+++..++-. ....+++ ..+.+++. .|..+.|+.++-.
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~---~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE---VLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh---HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 332211 11356789999999999999877522 2222222 23333333 4557777776643
No 10
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=5.8e-11 Score=102.05 Aligned_cols=140 Identities=21% Similarity=0.345 Sum_probs=83.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccc------cceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEF------EGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIK 266 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 266 (420)
|++.|+|.+|+||||+++.++..+.... ...+|+. .+..........+...+.......... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhh-----hHHHHH
Confidence 5789999999999999999998765543 2333333 333222222223333332222211110 011122
Q ss_pred HH-hcCCeEEEEEeCCCCHHH-------------HHHHhcCCCCCCCCcEEEeecCChhh---hhhcCCCeEEEeCCCCH
Q 046970 267 ER-LQQMKVFIVLDDVNKPEQ-------------LIFLVGGLDRFGPRSRIIVTTRDKQV---FDECEVDSIYEVEGLNK 329 (420)
Q Consensus 267 ~~-l~~~~~LlVLDdv~~~~~-------------l~~l~~~~~~~~~g~~IIiTtR~~~~---~~~~~~~~~~~l~~L~~ 329 (420)
.. ...+++++|+|++++... +..+... ...+++++|||+|.... .........+++.+|++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 22 256899999999854422 2223322 12578999999998765 23333446899999999
Q ss_pred HHHHHHHHhcc
Q 046970 330 DESLELFSNFA 340 (420)
Q Consensus 330 ~ea~~L~~~~a 340 (420)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997764
No 11
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=1.4e-10 Score=126.48 Aligned_cols=192 Identities=14% Similarity=0.171 Sum_probs=121.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....+|-|..-++.|.. ....+++.|+|++|.||||++.++.++. +.+.|+. +.. ...+...+...++
T Consensus 12 ~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~~~l~ 79 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFASYLI 79 (903)
T ss_pred CccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHHHHHH
Confidence 45678888865555532 2357899999999999999999988643 3688986 221 2234455666666
Q ss_pred HHHhhcccc----C------CCCCc----hHHHHHHhc--CCeEEEEEeCCCCHH------HHHHHhcCCCCCCCCcEEE
Q 046970 247 SEILEENLK----I------GTLNL----PEYIKERLQ--QMKVFIVLDDVNKPE------QLIFLVGGLDRFGPRSRII 304 (420)
Q Consensus 247 ~~l~~~~~~----~------~~~~~----~~~l~~~l~--~~~~LlVLDdv~~~~------~l~~l~~~~~~~~~g~~II 304 (420)
..+...... . ..... ...+...+. +.+++|||||+...+ .+..++.. ..++.++|
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv 156 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLV 156 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEE
Confidence 665321111 0 00011 222222232 579999999995432 33444433 34677898
Q ss_pred eecCChhhhhh--c-CCCeEEEeC----CCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 046970 305 VTTRDKQVFDE--C-EVDSIYEVE----GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFYR 377 (420)
Q Consensus 305 iTtR~~~~~~~--~-~~~~~~~l~----~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~ 377 (420)
||||...-+.. . -.....++. +|+.+|+.+||....+.. .+ .+.+.++.+.|+|+|+++..++..+..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-IE----AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-CC----HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99998432211 0 122345565 999999999998765322 11 244678999999999999999877754
Q ss_pred C
Q 046970 378 K 378 (420)
Q Consensus 378 ~ 378 (420)
.
T Consensus 232 ~ 232 (903)
T PRK04841 232 N 232 (903)
T ss_pred C
Confidence 4
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=6e-10 Score=108.76 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=118.2
Q ss_pred CCCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhcccc------ceEEEEeccccccccCH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE------GECFITNVREESERVGL 238 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~v~~~~~~~~~~~~ 238 (420)
.++.++||+.++++|...|.. .......+.|+|++|+|||++++.+++.+..... ..+++. .....+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCCH
Confidence 457899999999999998863 1233567899999999999999999987654322 233443 2222345
Q ss_pred HHHHHHHHHHHhh--ccccCCCCC--c-hHHHHHHhc--CCeEEEEEeCCCCHH-----HHHHHhcC--CCCC-CCCcEE
Q 046970 239 VHLRERVLSEILE--ENLKIGTLN--L-PEYIKERLQ--QMKVFIVLDDVNKPE-----QLIFLVGG--LDRF-GPRSRI 303 (420)
Q Consensus 239 ~~l~~~ll~~l~~--~~~~~~~~~--~-~~~l~~~l~--~~~~LlVLDdv~~~~-----~l~~l~~~--~~~~-~~g~~I 303 (420)
..+...++.++.. ......... . ...+.+.+. +++++||||+++... .+..+... .... +....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 5677777777742 111111111 1 344455553 568999999997661 13333322 1111 123345
Q ss_pred EeecCChhhhhhc------C-CCeEEEeCCCCHHHHHHHHHhccc---CCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 304 IVTTRDKQVFDEC------E-VDSIYEVEGLNKDESLELFSNFAF---RQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 304 IiTtR~~~~~~~~------~-~~~~~~l~~L~~~ea~~L~~~~a~---~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
|.++......... . ....+.+++++.++..+++..++. ......++..+.+.+++..+.|.|..+
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 5555444321111 1 125688999999999999988763 222223333445566777777888443
No 13
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=2.9e-10 Score=106.05 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=104.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHH---
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKER--- 268 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~--- 268 (420)
...+.|+|++|+|||||++.+++.+...-...+++.+ ...+..+++..+...+...............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999886532112223321 12344566666665553321111000112233322
Q ss_pred --hcCCeEEEEEeCCCCHH--HHHHHh---cCCCCCCCCcEEEeecCChhhhhhc----------CCCeEEEeCCCCHHH
Q 046970 269 --LQQMKVFIVLDDVNKPE--QLIFLV---GGLDRFGPRSRIIVTTRDKQVFDEC----------EVDSIYEVEGLNKDE 331 (420)
Q Consensus 269 --l~~~~~LlVLDdv~~~~--~l~~l~---~~~~~~~~g~~IIiTtR~~~~~~~~----------~~~~~~~l~~L~~~e 331 (420)
..+++.++|+||++... .++.+. ...........|++|.... ..... .....+++++|+.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 25678999999997643 333332 2211112233455655432 11111 123467899999999
Q ss_pred HHHHHHhcccCCC--CCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 332 SLELFSNFAFRQK--ICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 332 a~~L~~~~a~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
..+++........ ....-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887653211 1111224678899999999999999998876
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=2.8e-10 Score=108.23 Aligned_cols=190 Identities=16% Similarity=0.156 Sum_probs=105.6
Q ss_pred CCcccccccceeeecccccC---CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLG---LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
..|+|++..+++|..++... ......+.|+|++|+|||+||+.+++.+...+. ... .... .....+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~---~~~~~l-~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPAL---EKPGDL-AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchh---cCchhH-HHH
Confidence 56999999999998887531 223556889999999999999999998754321 111 0000 111111 111
Q ss_pred HHHHhhccc-cCCC---CCc--hHHHHHHhcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhc--C
Q 046970 246 LSEILEENL-KIGT---LNL--PEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC--E 317 (420)
Q Consensus 246 l~~l~~~~~-~~~~---~~~--~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~--~ 317 (420)
+..+..... -+++ ... .+.+...+.+.+..+|+++..+..++... ..+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 222111100 0000 000 23333444444444555544333322111 12344555677764332221 1
Q ss_pred CCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 046970 318 VDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSF 374 (420)
Q Consensus 318 ~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 374 (420)
....+++++++.++..+++.+.+......- ..+.+..|++.|+|.|..+..+...
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~--~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEI--EPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHhCCCcchHHHHHHH
Confidence 345689999999999999998875332211 1356788999999999876655544
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.09 E-value=8.7e-10 Score=103.62 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=92.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
.....+.+||+||+||||||+.++......|...-=+ ..++.++..-+ .. .-+...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-e~---------------a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-EE---------------ARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-HH---------------HHHHHh
Confidence 3567788999999999999999999876665422111 12222222211 11 112233
Q ss_pred cCCeEEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEe--ecCChhhh---hhcCCCeEEEeCCCCHHHHHHHHHhcccC
Q 046970 270 QQMKVFIVLDDVN--KPEQLIFLVGGLDRFGPRSRIIV--TTRDKQVF---DECEVDSIYEVEGLNKDESLELFSNFAFR 342 (420)
Q Consensus 270 ~~~~~LlVLDdv~--~~~~l~~l~~~~~~~~~g~~IIi--TtR~~~~~---~~~~~~~~~~l~~L~~~ea~~L~~~~a~~ 342 (420)
.+++.+|.+|.|+ +..|-+.|++... .|.-|+| ||-|+... .......++++++|+.++..+++.+-+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 5789999999994 4556677777753 6666665 77776431 11234589999999999999999883311
Q ss_pred -CC-CC---chhHHHHHHHHHHHhcCCh
Q 046970 343 -QK-IC---PKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 343 -~~-~~---~~~~~~~~~~i~~~~~G~P 365 (420)
.. .. ..-.++..+-++..++|=-
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 11 11 1011245566777777654
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=99.06 E-value=2.4e-09 Score=97.26 Aligned_cols=154 Identities=14% Similarity=0.200 Sum_probs=95.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcC
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQ 271 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 271 (420)
.+.+.|+|++|+|||+|+..+++....+...+.|+. ... ....... +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~---~~~~~~~--------------------~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSK---SQYFSPA--------------------VLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHH---hhhhhHH--------------------HHhhcc-
Confidence 457899999999999999999998766555666765 110 0000001 111112
Q ss_pred CeEEEEEeCCCCH---HHHH-HHhcCCCCC-CCCcEEE-eecCC---------hhhhhhcCCCeEEEeCCCCHHHHHHHH
Q 046970 272 MKVFIVLDDVNKP---EQLI-FLVGGLDRF-GPRSRII-VTTRD---------KQVFDECEVDSIYEVEGLNKDESLELF 336 (420)
Q Consensus 272 ~~~LlVLDdv~~~---~~l~-~l~~~~~~~-~~g~~II-iTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~ 336 (420)
+.-+|+|||++.. ..++ .+...++.. ..+..+| +|+.. +.+...+.....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 2348999999753 2222 222222111 2355554 45543 244444555678999999999999999
Q ss_pred HhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 337 SNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
.+.+.......+ ++...-|++.+.|..-.+..+-..|
T Consensus 171 ~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 988864432222 3567788899988877776554444
No 17
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=4.3e-10 Score=107.94 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=104.5
Q ss_pred CCCCcccccccceeeeccccc---CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL---GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
...+|+|++..++.+..++.. .......+.|+|++|+|||+||+.+++.+...+. +.. ....... ..+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~l~ 94 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GDLA 94 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HHHH
Confidence 456799999999998877753 2234567889999999999999999998754321 111 1001001 1111
Q ss_pred HHHHHHhhccc-cCCC---CCc--hHHHHHHhcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhc-
Q 046970 244 RVLSEILEENL-KIGT---LNL--PEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC- 316 (420)
Q Consensus 244 ~ll~~l~~~~~-~~~~---~~~--~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~- 316 (420)
.++..+..... -+++ ... .+.+...+.+.+..+++|+..+...+.. . ..+.+-|..|++...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~---l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---D---LPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---c---CCCceEEeecCCcccCCHHHH
Confidence 22221111000 0000 000 1222233333333344443322221110 0 12334455666654332221
Q ss_pred -CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 046970 317 -EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSF 374 (420)
Q Consensus 317 -~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 374 (420)
.....+++++++.++..+++.+.+......- ..+.+..|++.|+|.|..+..+...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1345789999999999999998875433222 2356889999999999766555543
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92 E-value=6.9e-09 Score=94.16 Aligned_cols=175 Identities=16% Similarity=0.188 Sum_probs=101.2
Q ss_pred CCCccc--ccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHH
Q 046970 168 FTGSVG--VNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 168 ~~~~vG--R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
.++|++ .+..++.+.+++.. .....+.|+|++|+|||+||+.+++.........+++. +.... .-...+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~------~~~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA------QADPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH------HhHHHH
Confidence 345653 23355566665442 34568899999999999999999987654444444554 11110 000011
Q ss_pred HHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCcEEEeecCChh---------
Q 046970 246 LSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE---Q-LIFLVGGLDR-FGPRSRIIVTTRDKQ--------- 311 (420)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~---~-l~~l~~~~~~-~~~g~~IIiTtR~~~--------- 311 (420)
...+.+ .-+||+||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 --------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 85 --------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred --------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 111122 2389999996432 1 2223222211 123347888887432
Q ss_pred hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 046970 312 VFDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSF 374 (420)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 374 (420)
+.........+++++++.++...++...+-.....- ..+..+.+.+.+.|+|..+..+-..
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL--PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 111222246789999999999999987653222111 1255678888899999988876443
No 19
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.89 E-value=2.7e-08 Score=98.41 Aligned_cols=177 Identities=17% Similarity=0.234 Sum_probs=105.3
Q ss_pred CCCCccccccccee---eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRH---IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
..+.+||.+..+.. |..++... ....+.|+|++|+||||||+.+++.....|.. +.. . ..+... .+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~--~~~~~~-ir 78 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---V--TSGVKD-LR 78 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---c--cccHHH-HH
Confidence 34679999888777 77777533 45578899999999999999999876544321 110 0 011111 11
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEe--ecCChhhh---hhc
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIV--TTRDKQVF---DEC 316 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIi--TtR~~~~~---~~~ 316 (420)
.++..... ....+++.+|++|+++.. .+.+.|+..+. .+..++| ||.+.... ...
T Consensus 79 ~ii~~~~~---------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 79 EVIEEARQ---------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHHHHHHH---------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 12111100 111357789999999754 44555655543 3444444 44443211 111
Q ss_pred CCCeEEEeCCCCHHHHHHHHHhcccCCCCCc-hhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 317 EVDSIYEVEGLNKDESLELFSNFAFRQKICP-KDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 317 ~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
.....+++.+++.++..+++.+......... .-..+....+++.++|.|..+..+-
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2337889999999999999987653211000 1123567789999999998765443
No 20
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.6e-07 Score=91.28 Aligned_cols=189 Identities=14% Similarity=0.145 Sum_probs=107.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+++|-+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+....... ..+.+.-....++.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRKCIICKEIE 83 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCCCHHHHHHh
Confidence 44678999998888888776432 346778999999999999999998763211000 00000000011111
Q ss_pred HHHhhccccCC-----CCCchHHHHHHh-----cCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEeecCChh-hh
Q 046970 247 SEILEENLKIG-----TLNLPEYIKERL-----QQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRIIVTTRDKQ-VF 313 (420)
Q Consensus 247 ~~l~~~~~~~~-----~~~~~~~l~~~l-----~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~IIiTtR~~~-~~ 313 (420)
......-.... ..+....+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+.. +.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 00000000000 000011122221 2345699999997654 35667766665556667777665543 32
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
.. .+....+++++++.++..+.+...+-.....- ..+.+..|++.++|.|..
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 22 22347889999999999998887653322111 124567888999998863
No 21
>PF13173 AAA_14: AAA domain
Probab=98.76 E-value=4.4e-08 Score=80.50 Aligned_cols=119 Identities=22% Similarity=0.223 Sum_probs=75.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
+++.|.|+.|+|||||+++++.+.. .-...+++. .... . ..... .. +..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~---~-~~~~~--~~-------------~~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP---R-DRRLA--DP-------------DLLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH---H-HHHHh--hh-------------hhHHHHHHhhccC
Confidence 6899999999999999999998765 223344554 1111 0 00000 00 0112233333347
Q ss_pred eEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhh------cCCCeEEEeCCCCHHHH
Q 046970 273 KVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE------CEVDSIYEVEGLNKDES 332 (420)
Q Consensus 273 ~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~------~~~~~~~~l~~L~~~ea 332 (420)
+.+++||++....+|...+..+....++.+|++|+.+...+.. .+....++|.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7899999998887776666555444567899999987765432 12335679999998773
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=6.2e-08 Score=99.20 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=111.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+...-. . .....+.-..+..+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~--------~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETG-V--------TSQPCGVCRACREID 83 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccC-C--------CCCCCcccHHHHHHh
Confidence 44678999999999988887442 2456779999999999999999987632100 0 000001111111111
Q ss_pred HHHhhccccCCCCC-c-hHHHHHHh--------cCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEeecCChhhhh
Q 046970 247 SEILEENLKIGTLN-L-PEYIKERL--------QQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRIIVTTRDKQVFD 314 (420)
Q Consensus 247 ~~l~~~~~~~~~~~-~-~~~l~~~l--------~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~IIiTtR~~~~~~ 314 (420)
..-......++..+ . .+.+++.+ .++.-++|||+++... .++.|+..+.......++|+||++.....
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00000000000000 0 11111111 2345689999997653 36667766655556778887777654322
Q ss_pred -h-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh-HHHHHH
Q 046970 315 -E-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP-LALKVL 371 (420)
Q Consensus 315 -~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 371 (420)
. ......+.+++++.++..+.+.+.+......- ..+..+.|++.++|.. -+|..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 23457899999999999999988764332211 1255678888888865 355543
No 23
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=4e-08 Score=104.85 Aligned_cols=204 Identities=15% Similarity=0.236 Sum_probs=116.0
Q ss_pred CcccccccceeeecccccC-CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEe-ccccccc---cCHHHHHHH
Q 046970 170 GSVGVNSRIRHIKSLLHLG-LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITN-VREESER---VGLVHLRER 244 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~-~~~~~~~---~~~~~l~~~ 244 (420)
.++||+.+++.|...+..- .....++.+.|.+|||||+|++++...+.+. ...++.. +...... ..+....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999998888653 3346799999999999999999999987655 1111110 0001111 111112222
Q ss_pred HHHHH-------------------hhcc-----------------c---cCCCCCc--------hHHHHHHh-cCCeEEE
Q 046970 245 VLSEI-------------------LEEN-----------------L---KIGTLNL--------PEYIKERL-QQMKVFI 276 (420)
Q Consensus 245 ll~~l-------------------~~~~-----------------~---~~~~~~~--------~~~l~~~l-~~~~~Ll 276 (420)
+..++ +... . ....... ...+.-.. +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 22211 1100 0 0000110 11122222 3459999
Q ss_pred EEeCC-CCHH----HHHHHhcCCC--CC-CCCcEEEeecCCh--hhhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCC
Q 046970 277 VLDDV-NKPE----QLIFLVGGLD--RF-GPRSRIIVTTRDK--QVFDECEVDSIYEVEGLNKDESLELFSNFAFRQKIC 346 (420)
Q Consensus 277 VLDdv-~~~~----~l~~l~~~~~--~~-~~g~~IIiTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 346 (420)
|+||+ |-.. -++.++.... .+ ....-.+.|.+.. .+.........+.|.||+..+...|...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999 4332 2344443332 00 0011122233322 112222345789999999999999998877442222
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHHHHhcCC
Q 046970 347 PKDFLVLSKRVVDYANGNPLALKVLGSFFYRK 378 (420)
Q Consensus 347 ~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~ 378 (420)
+ .+....|+++..|+|+-+..+-..|...
T Consensus 239 ~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 239 P---APLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred c---chHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 2 2557899999999999999998888765
No 24
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.6e-07 Score=98.10 Aligned_cols=180 Identities=14% Similarity=0.107 Sum_probs=109.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-c-c---c----------------eEE
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-F-E---G----------------ECF 225 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f-~---~----------------~~~ 225 (420)
....+||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+... . . + ..+
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 44678999999888888886432 24566899999999999999999876432 1 0 0 011
Q ss_pred EEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEE
Q 046970 226 ITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRI 303 (420)
Q Consensus 226 v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~I 303 (420)
+. .....++.. .+++...+. ..-..++.-++|+|+++.. ...+.|+..+.......++
T Consensus 93 id----Aas~~kVDd-IReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 93 VD----AASRTKVDD-TRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred ec----cccccCHHH-HHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 11 000001111 111111110 0012356779999999654 5567777777655566776
Q ss_pred EeecCCh-hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 304 IVTTRDK-QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 304 IiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
|++|.+. .+... ......|++++|+.++..+.+.+.+-..... -..+.+..|++.++|.|.-+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 6655543 33322 2234789999999999999998766332211 122457789999999886443
No 25
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.73 E-value=1e-07 Score=84.03 Aligned_cols=179 Identities=18% Similarity=0.186 Sum_probs=97.9
Q ss_pred CCCCcccccccceeeeccccc---CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL---GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
..++|||-+.-+..+.-++.. ..+....+.+||+||+||||||.-+++.....|. +... .......++..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k~~dl~~--- 94 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEKAGDLAA--- 94 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--SCHHHHH---
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhhHHHHHH---
Confidence 457899999988887655542 2344678999999999999999999998876653 2221 00111111111
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCC--------CCC-----------CcE
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDR--------FGP-----------RSR 302 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~--------~~~-----------g~~ 302 (420)
+...+. ++-+|.+|+++.. .+-+.|.+.... -++ -+-
T Consensus 95 ---------------------il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 95 ---------------------ILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------------HHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------------HHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111122 3447777988644 222333332211 011 122
Q ss_pred EEeecCChhhhhhcC--CCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 046970 303 IIVTTRDKQVFDECE--VDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFY 376 (420)
Q Consensus 303 IIiTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~ 376 (420)
|=.|||...+..... ..-..+++..+.+|-.+++.+.+..-...- .++.+.+|++.+.|-|.-..-+-..++
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i--~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI--DEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE---HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 446788655533332 345568999999999999998874433222 246789999999999976665544444
No 26
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.72 E-value=1.2e-07 Score=86.12 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=88.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 270 (420)
..+.+.|+|.+|+|||+||+.+++.....-....++... . ....+ .. .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~----~------~~~~~---------------------~~-~ 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA----S------PLLAF---------------------DF-D 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH----H------hHHHH---------------------hh-c
Confidence 356789999999999999999998764432334444410 0 00000 00 1
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhcCCCCC-CCCc-EEEeecCChhhhh--------hcCCCeEEEeCCCCHHHHHHHHHh
Q 046970 271 QMKVFIVLDDVNKP--EQLIFLVGGLDRF-GPRS-RIIVTTRDKQVFD--------ECEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 271 ~~~~LlVLDdv~~~--~~l~~l~~~~~~~-~~g~-~IIiTtR~~~~~~--------~~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
...-+||+||++.. ...+.+...+... ..+. .+|+|++...... .+.....+++++|+.++-.+++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 12347899999543 2222232222111 1233 3666666432111 222346889999999988777776
Q ss_pred cccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 046970 339 FAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFY 376 (420)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~ 376 (420)
.+-...... .++..+.+++.+.|++..+..+-..|.
T Consensus 169 ~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 169 AAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 542222111 125677888899999999887766553
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.71 E-value=4.8e-08 Score=80.43 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=71.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc-----ccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE-----FEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEY 264 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~ 264 (420)
+.+.+.|+|.+|+|||+++.++++..... -...+|+. .........+...++..+............ .+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 35688999999999999999999976543 23455665 444447888888888888766544122222 556
Q ss_pred HHHHhcCC-eEEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEeecCC
Q 046970 265 IKERLQQM-KVFIVLDDVNKP---EQLIFLVGGLDRFGPRSRIIVTTRD 309 (420)
Q Consensus 265 l~~~l~~~-~~LlVLDdv~~~---~~l~~l~~~~~~~~~g~~IIiTtR~ 309 (420)
+.+.+... ..+||+|+++.. +.++.+....+ ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666554 469999999655 33444443333 567778877665
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=2.1e-07 Score=89.76 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=105.9
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc-cc-eEEEEeccccccccCHHHHHH--
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EG-ECFITNVREESERVGLVHLRE-- 243 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~-~~~v~~~~~~~~~~~~~~l~~-- 243 (420)
...++|++..++.|.+++..+ ..+.+.++|++|+||||+|+.+++.+..+. .. ...+. ....... ....+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~~~~ 89 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLVEDP 89 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhhcCc
Confidence 467899999999998888643 344688999999999999999998764331 21 22332 1111000 0000000
Q ss_pred HHHHHHhhccc-cCCCCCchH-HHHHHh-----cCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEeecCChh-hh
Q 046970 244 RVLSEILEENL-KIGTLNLPE-YIKERL-----QQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRIIVTTRDKQ-VF 313 (420)
Q Consensus 244 ~ll~~l~~~~~-~~~~~~~~~-~l~~~l-----~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~IIiTtR~~~-~~ 313 (420)
.....+..... .....+... .++... ...+-+||+||++... ....+...+......+++|+|+.+.. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 00000000000 000001111 111111 1334589999996442 23333333333345677887775432 22
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
.. ......+++.+++.++..+++...+-.....- ..+.+..+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY--DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 21 12346788999999999999988653322211 135677888889888766543
No 29
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.70 E-value=1.7e-07 Score=87.01 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
...+.||-+..+.+ ..+|.. +.+....+.+||++|+||||||+.++..-+.+- ..|+. .+....-..-.+.
T Consensus 136 tL~dyvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRD 208 (554)
T ss_pred hHHHhcchhhhcCc-chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHH
Confidence 34567777766655 333321 244677889999999999999999998765542 34554 2221111112222
Q ss_pred HHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEe--ecCChhhh---hhcC
Q 046970 245 VLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVN--KPEQLIFLVGGLDRFGPRSRIIV--TTRDKQVF---DECE 317 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~--~~~~l~~l~~~~~~~~~g~~IIi--TtR~~~~~---~~~~ 317 (420)
++.+... ...+.+++.+|.+|.|. +..|-+.|++.. ..|.-++| ||.++... ....
T Consensus 209 ife~aq~--------------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 209 IFEQAQN--------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHHHHHH--------------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHh
Confidence 3222211 12356789999999994 445556666654 36665555 77777542 1233
Q ss_pred CCeEEEeCCCCHHHHHHHHHh
Q 046970 318 VDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 318 ~~~~~~l~~L~~~ea~~L~~~ 338 (420)
...++.|++|+.++...++.+
T Consensus 272 RC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred ccceeEeccCCHHHHHHHHHH
Confidence 457889999999999999877
No 30
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.69 E-value=2.5e-07 Score=83.29 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=93.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccc--eEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEG--ECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.|+|..|.|||.|..++++.+....+. ++++. ...+...+...+... ....+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~~--------~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRDG--------EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHTT--------SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHcc--------cchhhhhhh
Confidence 4568899999999999999999987665432 34443 233444444333321 134455555
Q ss_pred cCCeEEEEEeCCCCH---HHH-HHHhcCCCC-CCCCcEEEeecCCh-h--------hhhhcCCCeEEEeCCCCHHHHHHH
Q 046970 270 QQMKVFIVLDDVNKP---EQL-IFLVGGLDR-FGPRSRIIVTTRDK-Q--------VFDECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~---~~l-~~l~~~~~~-~~~g~~IIiTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L 335 (420)
++ -=+|++||++.. ..+ +.+...++. ...|.++|+|++.. . +...+...-.+++++++.++..++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 53 347889999543 211 122221111 13566899999643 2 222234567899999999999999
Q ss_pred HHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHH
Q 046970 336 FSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGS 373 (420)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 373 (420)
+.+.+-.....- .++.+.-|++.+.+..-.|..+-.
T Consensus 175 l~~~a~~~~~~l--~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGIEL--PEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT--S---HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCC--cHHHHHHHHHhhcCCHHHHHHHHH
Confidence 998885433222 235677788888777766665433
No 31
>PRK08727 hypothetical protein; Validated
Probab=98.68 E-value=4.5e-07 Score=82.53 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=87.9
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
..+.|+|.+|+|||+|+..+++....+...+.|+. . .+....+.. ..+.+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~------~~~~~~~~~-----------------~~~~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----L------QAAAGRLRD-----------------ALEAL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----H------HHhhhhHHH-----------------HHHHH-hc
Confidence 46999999999999999999998766544556665 1 111111100 11111 12
Q ss_pred eEEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEeecCChh---------hhhhcCCCeEEEeCCCCHHHHHHHHHh
Q 046970 273 KVFIVLDDVNKP----EQLIFLVGGLDR-FGPRSRIIVTTRDKQ---------VFDECEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 273 ~~LlVLDdv~~~----~~l~~l~~~~~~-~~~g~~IIiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
.-+||+||++.. .....+...++. ...+..+|+|++... +.........+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 348999999532 111222222211 124567999998532 222233456889999999999999998
Q ss_pred cccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 339 FAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
++.......+ ++...-|++.++|-.-.+
T Consensus 174 ~a~~~~l~l~--~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLALD--EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCCC--HHHHHHHHHhCCCCHHHH
Confidence 7643222111 255677888887666555
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=3.3e-07 Score=92.97 Aligned_cols=191 Identities=19% Similarity=0.144 Sum_probs=110.1
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+-... +.. ....+.-...+.+.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~-----~~pCg~C~sC~~I~ 82 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVT-----STPCEVCATCKAVN 82 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCC-----CCCCccCHHHHHHh
Confidence 44679999999999988887442 246789999999999999999998753211 000 00000000111110
Q ss_pred HHHhhccccCCCC--CchHHHHHH--------hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhhhh
Q 046970 247 SEILEENLKIGTL--NLPEYIKER--------LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQVFD 314 (420)
Q Consensus 247 ~~l~~~~~~~~~~--~~~~~l~~~--------l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~ 314 (420)
..-...-..+... ...+.+++. ..++.-++|+|+++.. .....|+..+.....+.++|++|.+..-..
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000000000000 001112111 1245679999999754 455666666655456677777776543221
Q ss_pred --hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 315 --ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 315 --~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.......+++++++.++..+.+.+.+-.....- ..+....|++.++|.+..+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 123457889999999999999887764332211 12456788888998775443
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=5.2e-07 Score=90.79 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=109.2
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc--cccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS--EFEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .....|+.+... ..
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc------------~~ 78 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC------------LA 78 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh------------HH
Confidence 34568898888888877776432 2456799999999999999999987632 222233332100 00
Q ss_pred HHHHHhhccccC-----CCCCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-h
Q 046970 245 VLSEILEENLKI-----GTLNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-Q 311 (420)
Q Consensus 245 ll~~l~~~~~~~-----~~~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~ 311 (420)
+.......-..+ ...+....+.+.+ .+++-++|+|+++.. ..++.|+..+....+.+.+|++|... .
T Consensus 79 i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 79 VRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 000000000000 0000112222222 245669999999644 44667776665544555656555443 3
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 312 VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 312 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
+... ......+++.+++.++..+.+.+.+-...... ..+.+..|++.++|.+.-+
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3222 22356899999999999999988764333221 1245788999999998644
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=2.3e-07 Score=93.95 Aligned_cols=196 Identities=12% Similarity=0.135 Sum_probs=110.2
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-..-... .... .....+.......+.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~--~~g~--~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADG--EGGI--TAQPCGQCRACTEID 88 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccc--cccC--CCCCCcccHHHHHHH
Confidence 44678999998888888887442 245678999999999999999998763210000 0000 000011111111111
Q ss_pred HHHhhccccCCCC-Cc-hHHHHH---H-----hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhh
Q 046970 247 SEILEENLKIGTL-NL-PEYIKE---R-----LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~~-~~-~~~l~~---~-----l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~ 313 (420)
..-...-..++.. .. .+.+++ . ..++.-++|+|+++.. ...+.|+..+.....++.+|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0000000000000 00 122222 1 1345679999999654 4577788777665566676655554 3333
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.. ......+.++.++.++..+.+.+.+........ .+..+.|++.++|.|.-..
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d--~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE--VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 22 123477899999999999988876533222111 2446788999999986443
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.65 E-value=3.4e-07 Score=93.82 Aligned_cols=194 Identities=15% Similarity=0.202 Sum_probs=125.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+.|-|..-++.|.+ ..+.+.+.|..++|.|||||+.+++. ....-..+.|+.-- ....+...+.+.++
T Consensus 17 ~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~yLi 87 (894)
T COG2909 17 RPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLSYLI 87 (894)
T ss_pred CcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHHHHH
Confidence 44567777765555443 23579999999999999999999988 33344678898721 22456677777777
Q ss_pred HHHhhccccC---------CCCCc-----hHHHHHHhc--CCeEEEEEeCCCCH------HHHHHHhcCCCCCCCCcEEE
Q 046970 247 SEILEENLKI---------GTLNL-----PEYIKERLQ--QMKVFIVLDDVNKP------EQLIFLVGGLDRFGPRSRII 304 (420)
Q Consensus 247 ~~l~~~~~~~---------~~~~~-----~~~l~~~l~--~~~~LlVLDdv~~~------~~l~~l~~~~~~~~~g~~II 304 (420)
..+..-.+.. ..... ...+..-+. .+++.|||||..-. ..++.|+... .++..+|
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lv 164 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLV 164 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEE
Confidence 7775322211 11111 222222222 36899999998432 2355566554 4788999
Q ss_pred eecCChhhhhhcC---CCeEEEeC----CCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 046970 305 VTTRDKQVFDECE---VDSIYEVE----GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFYR 377 (420)
Q Consensus 305 iTtR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~ 377 (420)
+|||...-+.... .+...++. .|+.+|+.++|....... -+ ...++.+.+..+|-+-||..++=.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld--~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD--AADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC--hHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9999864322110 12333443 489999999998876221 11 133688999999999999999888873
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=98.65 E-value=9.8e-08 Score=96.36 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=104.7
Q ss_pred CCCCcccccccceeeecccccC--CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG--LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|.+..++.|.+|+..- ....+.+.|+|++|+||||+|+.+++.+. ++. +-+. . +.... ......
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~r~-~~~i~~ 83 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQRT-ADVIER 83 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---ccccc-HHHHHH
Confidence 4466899999999998888632 12267899999999999999999999863 221 1121 1 11111 112222
Q ss_pred HHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH------HHHHHhcCCCCCCCCcEEEeecCChhhhh---h
Q 046970 245 VLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE------QLIFLVGGLDRFGPRSRIIVTTRDKQVFD---E 315 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~------~l~~l~~~~~~~~~g~~IIiTtR~~~~~~---~ 315 (420)
++...... .. ....++-+||+|+++... .+..+...+. ..+..||+|+.+..-.. .
T Consensus 84 ~i~~~~~~----~s---------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 84 VAGEAATS----GS---------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHhhcc----Cc---------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 22221110 00 011367899999996542 2444443333 23445666665432111 1
Q ss_pred cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 316 CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 316 ~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
......+++++++.++....+...+.......+ .+....|++.++|....+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 224567899999999999988877643332111 2456778888887665554
No 37
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=4.1e-07 Score=94.00 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=111.7
Q ss_pred CCCCcccccccceeeeccccc---CCCCceEEEEeccCcchHHHHHHHHHHHhhcc-----cc--ceEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL---GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-----FE--GECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~--~~~~v~~~~~~~~~~ 236 (420)
.++.+.|||.|+++|...|.. +.....++.|+|++|.|||++++.+.+.+... .+ ..+++. + ..-.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-C---m~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-G---MNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-C---CccC
Confidence 567899999999999988853 23334577899999999999999999876432 12 133443 2 1123
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCc---hHHHHHHhc---CCeEEEEEeCCCCHH-----HHHHHhcCCCCCCCCcEEEe
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNL---PEYIKERLQ---QMKVFIVLDDVNKPE-----QLIFLVGGLDRFGPRSRIIV 305 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~---~~~l~~~l~---~~~~LlVLDdv~~~~-----~l~~l~~~~~~~~~g~~IIi 305 (420)
....+...+..++.+.... ..... ...+...+. ....+||||+++... .+-.|..... ..+++|++
T Consensus 829 tp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 4455666666666443321 11111 333443332 224699999996442 1222222211 23444433
Q ss_pred --ecCChhh--------hhhcCCCeEEEeCCCCHHHHHHHHHhcccCC-C-CCchhHHHHHHHHHHHhcCChHHHHHHHH
Q 046970 306 --TTRDKQV--------FDECEVDSIYEVEGLNKDESLELFSNFAFRQ-K-ICPKDFLVLSKRVVDYANGNPLALKVLGS 373 (420)
Q Consensus 306 --TtR~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~-~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 373 (420)
++.+..+ ...++ ...+..+|++.++..+++..++... . ..+...+-+++.++...|-.=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3432211 11121 2336679999999999999887431 1 22222223334344444555566666554
Q ss_pred Hh
Q 046970 374 FF 375 (420)
Q Consensus 374 ~L 375 (420)
..
T Consensus 985 Ag 986 (1164)
T PTZ00112 985 AF 986 (1164)
T ss_pred HH
Confidence 44
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.65 E-value=1.8e-07 Score=91.09 Aligned_cols=171 Identities=22% Similarity=0.319 Sum_probs=97.5
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..+.|++..+++|.+.+.. +....+.+.|+|++|+|||+||+.+++.....|-.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~---------- 188 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V---------- 188 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c----------
Confidence 4567777777777665431 112355689999999999999999999875543111 0
Q ss_pred HHHHHHHHHHHHhhccccCCCCCchHHHHHH-hcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC--C
Q 046970 238 LVHLRERVLSEILEENLKIGTLNLPEYIKER-LQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF--G 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~ 298 (420)
...+..... +... .....+.+. -...+.+|+||+++.. ..+..++..+..+ .
T Consensus 189 ~~~l~~~~~----g~~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 189 GSELVRKYI----GEGA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred hHHHHHHhh----hHHH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 011111110 0000 001112222 2346789999998643 1233333332221 2
Q ss_pred CCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCc-hhHHHHHHHHHHHhcCCh
Q 046970 299 PRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFAFRQKICP-KDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 299 ~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~-~~~~~~~~~i~~~~~G~P 365 (420)
.+..||.||..... .........++++..+.++..++|..++.+..... .. ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 46678888875432 22223457889999999999999998875433222 12 356777777654
No 39
>PRK09087 hypothetical protein; Validated
Probab=98.64 E-value=5.9e-07 Score=81.22 Aligned_cols=140 Identities=11% Similarity=0.133 Sum_probs=87.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcC
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQ 271 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 271 (420)
.+.+.|+|++|+|||+|++.++.... ..++.. ..+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~--------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANA--------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHh--------------------hhc
Confidence 45689999999999999998887542 224430 0111111111 111
Q ss_pred CeEEEEEeCCCC----HHHHHHHhcCCCCCCCCcEEEeecCC---------hhhhhhcCCCeEEEeCCCCHHHHHHHHHh
Q 046970 272 MKVFIVLDDVNK----PEQLIFLVGGLDRFGPRSRIIVTTRD---------KQVFDECEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 272 ~~~LlVLDdv~~----~~~l~~l~~~~~~~~~g~~IIiTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
-+|++||++. .+.+-.+...+. ..|..+|+|++. +.+...+.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 2788899943 233333332222 346779998873 23344445668899999999999999998
Q ss_pred cccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 339 FAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
.+-...... .++...-|++.+.|..-++..+-
T Consensus 165 ~~~~~~~~l--~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQLYV--DPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcCCCC--CHHHHHHHHHHhhhhHHHHHHHH
Confidence 874322211 13567788888888887777533
No 40
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.63 E-value=8.7e-07 Score=80.78 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=91.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcC
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQ 271 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 271 (420)
.+.+.|+|++|+|||+|+..+++....+-..+.++. .... .... ..+.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~---~~~~--------------------~~~~~~~~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKR---AWFV--------------------PEVLEGMEQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHH---hhhh--------------------HHHHHHhhh
Confidence 457899999999999999999997765434455554 1110 0000 011111111
Q ss_pred CeEEEEEeCCCCH---HHH----HHHhcCCCCCCCCcEEEeecCCh---------hhhhhcCCCeEEEeCCCCHHHHHHH
Q 046970 272 MKVFIVLDDVNKP---EQL----IFLVGGLDRFGPRSRIIVTTRDK---------QVFDECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 272 ~~~LlVLDdv~~~---~~l----~~l~~~~~~~~~g~~IIiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 335 (420)
--+|++||+... ..+ -.+...... ....++|+||+.. .+...+....++++++++.++-.++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 237899999543 222 122222111 1224799999854 2233344567899999999999999
Q ss_pred HHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 336 FSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
+.+.+-...... .++...-|++.+.|..-.+..+-..|
T Consensus 176 l~~~a~~~~~~l--~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 176 LQLRARLRGFEL--PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 988664322211 13567788888888877766554444
No 41
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=8.3e-07 Score=85.83 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=111.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc--ccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE--FEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|-+...+.|.+.+..+. -...+.++|+.|+||+|+|..+++.+-.+ ........... .....+.....+.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~c~~ 94 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPVARR 94 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChHHHH
Confidence 55789999988888888877542 25578899999999999999999876321 11100000000 0000000111122
Q ss_pred HHHHHhhccc--c----CCC----CCc-hHHHHH---Hhc-----CCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEE
Q 046970 245 VLSEILEENL--K----IGT----LNL-PEYIKE---RLQ-----QMKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRI 303 (420)
Q Consensus 245 ll~~l~~~~~--~----~~~----~~~-~~~l~~---~l~-----~~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~I 303 (420)
+.......-. . ... ... .+.+++ .+. +++.++|+|+++. ......|+..+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2111100000 0 000 111 333333 322 4567999999954 34456666665554556777
Q ss_pred EeecCChhh-hhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 304 IVTTRDKQV-FDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 304 IiTtR~~~~-~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
|++|.+... ... ......+.+.+++.++..+++...... .++ +....++..++|.|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 777766543 222 234578899999999999999876411 111 12267899999999865544
No 42
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=1.9e-07 Score=77.85 Aligned_cols=122 Identities=18% Similarity=0.224 Sum_probs=67.1
Q ss_pred cccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhc
Q 046970 173 GVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEE 252 (420)
Q Consensus 173 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~ 252 (420)
|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.....-....++. ....... ....... ...
T Consensus 2 ~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~---~~~~~~~-~~~--- 71 (151)
T cd00009 2 GQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG---LVVAELF-GHF--- 71 (151)
T ss_pred chHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh---hHHHHHh-hhh---
Confidence 6666777777766532 3568889999999999999999998754333344443 1111110 0000000 000
Q ss_pred cccCCCCCchHHHHHHhcCCeEEEEEeCCCCH-----HHHHHHhcCCCCC---CCCcEEEeecCChh
Q 046970 253 NLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP-----EQLIFLVGGLDRF---GPRSRIIVTTRDKQ 311 (420)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~-----~~l~~l~~~~~~~---~~g~~IIiTtR~~~ 311 (420)
............++.++++||++.. ..+..++...... ..+..+|+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111222446789999999853 2233333333221 36778888887653
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=5.9e-07 Score=85.65 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=106.7
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc------cccceEEEEeccccccccCHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS------EFEGECFITNVREESERVGLVHLR 242 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~v~~~~~~~~~~~~~~l~ 242 (420)
..++|-+...+.+.+.+..+ .-.....++|+.|+||||+|+.++..+.. +.+...|.. .. .....+..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCCCCHHHH-
Confidence 45778777777777777643 23567789999999999999999987522 223222321 00 011112221
Q ss_pred HHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEeecCChhhh-hh-cCC
Q 046970 243 ERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVN--KPEQLIFLVGGLDRFGPRSRIIVTTRDKQVF-DE-CEV 318 (420)
Q Consensus 243 ~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~--~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~-~~-~~~ 318 (420)
+++...+... -..+++-++|+|+++ +....+.|+..+....+++.+|++|.+...+ +. ...
T Consensus 79 r~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 79 RNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 1121111110 012345567777764 4556778888887767788888888765432 21 224
Q ss_pred CeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 319 DSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 319 ~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
...+++.+++.++....+.+... .. + .+.+..++.+++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~--~~-~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN--DI-K---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc--CC-C---HHHHHHHHHHcCCCHHHHH
Confidence 57899999999999888876541 11 1 1336678889999886443
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=98.63 E-value=8e-07 Score=80.92 Aligned_cols=153 Identities=16% Similarity=0.257 Sum_probs=92.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
..+.|+|.+|+|||.|++.+++.+..+-..++|+. . .++... ...+.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~------~~~~~~-----------------~~~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----L------AELLDR-----------------GPELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----H------HHHHhh-----------------hHHHHHhhhhC
Confidence 57889999999999999999987755444566665 1 111110 01122333333
Q ss_pred eEEEEEeCCCCH---HHH-HHHhcCCCC-CCCCcEEEeecCChh---------hhhhcCCCeEEEeCCCCHHHHHHHHHh
Q 046970 273 KVFIVLDDVNKP---EQL-IFLVGGLDR-FGPRSRIIVTTRDKQ---------VFDECEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 273 ~~LlVLDdv~~~---~~l-~~l~~~~~~-~~~g~~IIiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
. +||+||+... ..+ +.+...++. ...|..+|+|++... +...+.....+++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3 6789999522 122 223222221 134677888887432 122233457889999999999999986
Q ss_pred cccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 339 FAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
++.......+ ++...-+++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHLT--DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6533222111 3667788888888877766554444
No 45
>PLN03025 replication factor C subunit; Provisional
Probab=98.62 E-value=2.4e-07 Score=88.59 Aligned_cols=182 Identities=13% Similarity=0.175 Sum_probs=103.7
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc-cccceEEEEeccccccccCHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS-EFEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
....++|.+..+..|..++..+ ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+ .+...+.. ..+..
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~-~vr~~ 84 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGID-VVRNK 84 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHH-HHHHH
Confidence 3456888888888787776643 3445789999999999999999998633 2321111111 11111221 12222
Q ss_pred HHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhhhh-cCCCeE
Q 046970 246 LSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVFDE-CEVDSI 321 (420)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~~~-~~~~~~ 321 (420)
+.......... ..++.-+++||+++.. .....|...+...+..+++|+++... .+... ......
T Consensus 85 i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 85 IKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 22111110000 0235679999999654 22334444343345667777766543 22111 112367
Q ss_pred EEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 322 YEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 322 ~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
+++++++.++..+.+...+-.....-+ .+....+++.++|....+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 899999999999998877643332211 245678888888876443
No 46
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.62 E-value=5.1e-07 Score=89.87 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=99.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.|+|..|+|||+|++.+++.+..... .++++. ...+...+...+.... +..+.+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 356889999999999999999997654322 233433 2344445444433210 1133344444
Q ss_pred cCCeEEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEeecCCh---------hhhhhcCCCeEEEeCCCCHHHHHHH
Q 046970 270 QQMKVFIVLDDVNKP----EQLIFLVGGLDR-FGPRSRIIVTTRDK---------QVFDECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~----~~l~~l~~~~~~-~~~g~~IIiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 335 (420)
+. .-+||+||+... ...+.|...++. ...+..||+|+... .+...+..+-.+++++++.++..++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 347889999432 122233222211 12455688887643 1222334556788999999999999
Q ss_pred HHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 336 FSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
+.+.+-.......-.++...-|++.++|.|..+.-+...|
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9988743221011224677889999999998887655333
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=3.4e-08 Score=86.43 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=35.5
Q ss_pred Ccccccccceeeeccccc-CCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 170 GSVGVNSRIRHIKSLLHL-GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.|+||+.++++|...|.. .....+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999942 23447899999999999999999999988766
No 48
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=5e-07 Score=86.41 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=105.1
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+........++. +. .+...+.. .....+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIRNKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHHHHH
Confidence 3456899999999998888643 3345799999999999999999988643211111221 00 01111111 111111
Q ss_pred HHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCeEE
Q 046970 247 SEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDSIY 322 (420)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~~~ 322 (420)
..+..... .....+-++++|+++.. .....+...+....+.+.+|+++.... +... ......+
T Consensus 90 ~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 90 KEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 11111000 00124568999998643 233444444444445677777664322 2111 1123568
Q ss_pred EeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 323 EVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 323 ~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
++++++.++....+...+-.....- ..+.+..+++.++|.+.-+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999888764333211 1245778899999987764
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.60 E-value=1.1e-06 Score=85.38 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=108.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc----cc-----------------ceEE
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE----FE-----------------GECF 225 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~-----------------~~~~ 225 (420)
....++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.++..+... +. ...+
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 44678999999999988886432 34678899999999999999999876321 10 0111
Q ss_pred EEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEE
Q 046970 226 ITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRI 303 (420)
Q Consensus 226 v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~I 303 (420)
+... ...... -.++++..+... -..+++-++|+|+++.. .....++..+....+.+.+
T Consensus 91 ~~~~----~~~~~~-~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 91 IDAA----SNNGVD-DIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred eecc----ccCCHH-HHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 1100 000000 011111111100 01234568999998654 4456666666544566666
Q ss_pred EeecCChh-hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 304 IVTTRDKQ-VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 304 IiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
|++|.+.. +... ......+++++++.++..+.+...+-......+ .+.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHH
Confidence 66665543 2221 123467899999999999998876633222111 256778899999998766544
No 50
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=3.7e-08 Score=93.39 Aligned_cols=182 Identities=20% Similarity=0.217 Sum_probs=120.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERL 269 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l 269 (420)
..+.+.++|.|||||||++-++.+ ++..|....|+.+...++.+.-+...... .+.- .....+. ...+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag---~~gl---~~~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAG---ALGL---HVQPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHh---hccc---ccccchHHHHHHHHHH
Confidence 467899999999999999999999 88889888888767666554322222111 1111 1111122 56678888
Q ss_pred cCCeEEEEEeCCCCHHH-HHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeCCCCHH-HHHHHHHhcccCCC---
Q 046970 270 QQMKVFIVLDDVNKPEQ-LIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVEGLNKD-ESLELFSNFAFRQK--- 344 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~~~-l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~a~~~~--- 344 (420)
.+++.++|+||...... ...+...+....+...|+.|+|+.... .....+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999999865533 222222222224556799999986542 34567788888876 68888876653211
Q ss_pred CCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCCChhH
Q 046970 345 ICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRKSVKP 382 (420)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~ 382 (420)
.-.........+|.+...|.||+|+.+++..+.-...+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~ 200 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDE 200 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHH
Confidence 11112234578999999999999999999887755443
No 51
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.3e-06 Score=84.42 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=121.7
Q ss_pred CCCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhccccc--eEEEEeccccccccCHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG--ECFITNVREESERVGLVHLR 242 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~v~~~~~~~~~~~~~~l~ 242 (420)
.++.+.+|+.+++++...|.. ....+.-+.|+|.+|.|||+.++.+++++...... .+++. .....+...+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~ 90 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVL 90 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHH
Confidence 445699999999999987753 12223348899999999999999999988765433 45555 33345667777
Q ss_pred HHHHHHHhhccc-cCCCCCchHHHHHHhcC--CeEEEEEeCCCCHH-----HHHHHhcCCCCCCCCcE--EEeecCChhh
Q 046970 243 ERVLSEILEENL-KIGTLNLPEYIKERLQQ--MKVFIVLDDVNKPE-----QLIFLVGGLDRFGPRSR--IIVTTRDKQV 312 (420)
Q Consensus 243 ~~ll~~l~~~~~-~~~~~~~~~~l~~~l~~--~~~LlVLDdv~~~~-----~l~~l~~~~~~~~~g~~--IIiTtR~~~~ 312 (420)
..++.++..... .....+..+.+.+.+.. +.+++|||+++... .+-.|....... .++ +|..+-+...
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~ 168 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHH
Confidence 788877763322 22222226666666654 78999999985442 233343332222 333 3444444332
Q ss_pred --------hhhcCCCeEEEeCCCCHHHHHHHHHhcc---cCCCCCchhHHHHHHHHHHHhcC-ChHHHHH
Q 046970 313 --------FDECEVDSIYEVEGLNKDESLELFSNFA---FRQKICPKDFLVLSKRVVDYANG-NPLALKV 370 (420)
Q Consensus 313 --------~~~~~~~~~~~l~~L~~~ea~~L~~~~a---~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 370 (420)
....+. ..+..+|-+.+|-.+++..++ |......+...+++..++..-+| -=.|+..
T Consensus 169 ~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 169 LDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred HHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 222223 337899999999999998776 33444444555555555555554 3334443
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.1e-06 Score=87.65 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=105.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc----cc-----------------ceEE
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE----FE-----------------GECF 225 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~-----------------~~~~ 225 (420)
....++|.+.....|...+..+. -...+.++|++|+||||+|+.+++.+... +. ....
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 44678999887777777666432 23568899999999999999999875321 00 0111
Q ss_pred EEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEE
Q 046970 226 ITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRI 303 (420)
Q Consensus 226 v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~I 303 (420)
+. .....++..+ +++...+.. .-..+++-++|+|+++.. ...+.|+..+........+
T Consensus 91 l~----aa~~~gid~i-R~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 91 LD----AASNRGIDEI-RKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred Ee----CcccCCHHHH-HHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 11 0001111111 111111000 002245679999999654 3455666665543444554
Q ss_pred EeecCCh-hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC-ChHHHHHHHHHh
Q 046970 304 IVTTRDK-QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG-NPLALKVLGSFF 375 (420)
Q Consensus 304 IiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~~L 375 (420)
|++|.++ .+... ......+++.+++.++....+.+.+......- ..+....|++.++| .+.++..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444442 22221 22346889999999999999888764322111 12456778887765 466776665543
No 53
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1e-06 Score=89.03 Aligned_cols=181 Identities=16% Similarity=0.166 Sum_probs=106.7
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc---------------------ccceEE
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE---------------------FEGECF 225 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~ 225 (420)
....++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |.....
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4467899999888888888643 234567899999999999999999865321 111111
Q ss_pred EEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHH-HhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcE
Q 046970 226 ITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKE-RLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSR 302 (420)
Q Consensus 226 v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~ 302 (420)
+. .....++..+ ++++.. +.. -..+++-++|+|+++.. ...+.|+..+......+.
T Consensus 93 id----aas~~gvd~i-r~ii~~----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 93 ID----AASRTGVEET-KEILDN----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred ee----cccccCHHHH-HHHHHH----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 11 0000111111 111111 111 12346679999999644 446667766665555666
Q ss_pred EEeecCC-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHH
Q 046970 303 IIVTTRD-KQVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVL 371 (420)
Q Consensus 303 IIiTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 371 (420)
+|++|.+ ..+... ......+++++++.++..+.+.+.+-...... ..+....|++.++|.+. |+..+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~--e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS--DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6544443 333322 23457899999999999888877553222111 12456778888998664 44444
No 54
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.57 E-value=2.2e-06 Score=75.36 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=61.0
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCC
Q 046970 271 QMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKIC 346 (420)
Q Consensus 271 ~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 346 (420)
+.+-++|+||++.. ...+.|+..+....+.+.+|++|++. .+... ......+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g----i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG----I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC----C-
Confidence 45678999998654 34566666665555667777766654 22221 1234689999999999999998871 1
Q ss_pred chhHHHHHHHHHHHhcCChHH
Q 046970 347 PKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 347 ~~~~~~~~~~i~~~~~G~PLa 367 (420)
. .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 24578999999999853
No 55
>PTZ00202 tuzin; Provisional
Probab=98.56 E-value=7.9e-07 Score=85.58 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=111.3
Q ss_pred cccCCCCCch--hhHHHHHHHHHHHhhhcccc-----cccCCCCcccccccceeeecccccC-CCCceEEEEeccCcchH
Q 046970 134 SGWDSTNMRP--EARLVDEIVKDIMKKLKDKL-----LSRDFTGSVGVNSRIRHIKSLLHLG-LPDFRIVGIWGMGGIGK 205 (420)
Q Consensus 134 ~g~~~~~~~~--e~~~i~~i~~~v~~~l~~~~-----~~~~~~~~vGR~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGK 205 (420)
-||.+++... .+-...-.++...+.+++.+ .++....|+||+.++..|...|... ....+++.|+|++|+||
T Consensus 220 F~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GK 299 (550)
T PTZ00202 220 FGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGK 299 (550)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCH
Confidence 3455554432 22233344555555544422 2227789999999999999999643 23357999999999999
Q ss_pred HHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccC-CCC-Cc-hHHHHHH-hc-CCeEEEEEe-
Q 046970 206 TTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKI-GTL-NL-PEYIKER-LQ-QMKVFIVLD- 279 (420)
Q Consensus 206 TtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~-~~-~~~l~~~-l~-~~~~LlVLD- 279 (420)
|||++.+..... ...++.|.+ +..+++..++.+++.+.... .+. +. .+.+.+. .. +++.+||+-
T Consensus 300 TTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l 369 (550)
T PTZ00202 300 SSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL 369 (550)
T ss_pred HHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999997653 234554333 45788888888887532211 111 11 2223222 22 456666664
Q ss_pred -CCCCHHH----HHHHhcCCCCCCCCcEEEeecCChhhhhh---cCCCeEEEeCCCCHHHHHHHHHhc
Q 046970 280 -DVNKPEQ----LIFLVGGLDRFGPRSRIIVTTRDKQVFDE---CEVDSIYEVEGLNKDESLELFSNF 339 (420)
Q Consensus 280 -dv~~~~~----l~~l~~~~~~~~~g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~ 339 (420)
+-.+... .-.|... ..-|+|++.---+.+-.. ...-..|-+++++.++|.++-...
T Consensus 370 reg~~l~rvyne~v~la~d----rr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 370 REGSSLQRVYNEVVALACD----RRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cCCCcHHHHHHHHHHHHcc----chhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2222221 1122222 245778775543332111 112367889999999998876544
No 56
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1e-06 Score=90.38 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=109.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....+||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... . .....+.......+.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~-----~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----I-----TATPCGECDNCREIE 83 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----C-----CCCCCCCCHHHHHHH
Confidence 44679999998888888886432 2455789999999999999999987533210 0 000011111111111
Q ss_pred HHHhhccccCC-----CCCchHHHHHH-----hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhh
Q 046970 247 SEILEENLKIG-----TLNLPEYIKER-----LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~-----~~~~~~~l~~~-----l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~ 313 (420)
..-...-..+. ..+....+.+. ..++.-++|+|+++.. ...+.|+..+......+++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10000000000 00111111111 2356679999999644 45677776666555666666555544 333
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.. ......+.+++|+.++..+.+.+..-...... ..+....|++.++|.+.-..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDAL 218 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 22 22357899999999999999887653222111 12446778889999876443
No 57
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=4.4e-07 Score=92.84 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-... + ...+.......+.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~--------~pCg~C~sCr~i~ 83 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-G--------EPCGVCQSCTQID 83 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-C--------CCCcccHHHHHHh
Confidence 44679999999999988887432 246789999999999999999998653210000 0 0000000000110
Q ss_pred HHHhhccccCCCC-Cc-hHHHHHHh--------cCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEeecCChh-hh
Q 046970 247 SEILEENLKIGTL-NL-PEYIKERL--------QQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRIIVTTRDKQ-VF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~~-~~-~~~l~~~l--------~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~IIiTtR~~~-~~ 313 (420)
..-...-..+... .. .+.+++.+ .+++-++|+|+++... ....|+..+......+++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 0000000000000 00 11222221 2456799999997553 34555555544445667776665443 22
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.. .+....+.+.+++.++..+.+.+.+-.....- ..+.+..|++.++|.+.-+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHH
Confidence 11 12335678899999999999987764333221 12457889999999985444
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.4e-06 Score=84.91 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=100.2
Q ss_pred CCcccccccceeeecccccCCC--------CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLP--------DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVH 240 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 240 (420)
..++|-+..++.|.+.+..+.. -...+.++|++|+|||++|+.++..+-..... . . ..+.-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~-------~Cg~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-P-------GCGECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-C-------CCCCCH
Confidence 4566766666666666654321 24678899999999999999999865322110 0 0 000000
Q ss_pred HHHHHHHHHhhccc--cCC--CC--CchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec
Q 046970 241 LRERVLSEILEENL--KIG--TL--NLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT 307 (420)
Q Consensus 241 l~~~ll~~l~~~~~--~~~--~~--~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt 307 (420)
....+.......-. ... .. +....+.+.+ .+++-++|+|+++.. .....|+..+....++..+|++|
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 11111100000000 000 00 0011222222 234558888999654 33455666655545667666666
Q ss_pred CCh-hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 308 RDK-QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 308 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
.+. .+.+. ......+.+++++.++..+.+..... . + .+.+..++..++|.|...
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~-~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V-D---PETARRAARASQGHIGRA 210 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C-C---HHHHHHHHHHcCCCHHHH
Confidence 654 33322 22347889999999999998875431 1 1 234678899999999644
No 59
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.5e-06 Score=86.60 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=107.2
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.++..+--.... .....+.-.....+.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~---------~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGP---------TSDPCGTCHNCISIK 80 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCC---------CCCCccccHHHHHHh
Confidence 44678999888888877776432 24578899999999999999998854211100 000011111111111
Q ss_pred HHHhhccccCCCC--CchHHHH---HHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhh
Q 046970 247 SEILEENLKIGTL--NLPEYIK---ERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~~--~~~~~l~---~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~ 313 (420)
......-..++.. ...+.++ +.. .++.-++|+|+++.. ...+.|+..+....+.+.+|++|.+ ..+.
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~ 160 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP 160 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence 1100000000000 0011111 111 245668999999644 4466677666655566766665543 3333
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
.. ......+++.+++.++..+.+.+.+...+..-+ .+.+..|++.++|.+..
T Consensus 161 ~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 161 VTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 22 224578899999999999999887744332211 24567888889888753
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.7e-06 Score=85.39 Aligned_cols=186 Identities=13% Similarity=0.110 Sum_probs=107.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc-cc--eEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EG--ECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~--~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....++|-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+...- .. .|..+ .. ..
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~s----C~ 82 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TS----CL 82 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cH----HH
Confidence 44678999888888888877442 235688999999999999999998763321 10 01000 00 11
Q ss_pred HHHHHHhhccccCC-----CCCchHHHHHH-----hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-h
Q 046970 244 RVLSEILEENLKIG-----TLNLPEYIKER-----LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-K 310 (420)
Q Consensus 244 ~ll~~l~~~~~~~~-----~~~~~~~l~~~-----l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~ 310 (420)
.+.......-..+. ..+....+.+. ..++.-++|+|+++.. ..++.|+..+........+|++|.+ .
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 11111000000000 01111112221 2345679999999654 4577777776654455555544443 3
Q ss_pred hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 311 QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 311 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
.+... ......|.+.+++.++..+.+.+.+-.....- ..+....|++.++|.+.-
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~--e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY--DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCChHHH
Confidence 33222 22346799999999999998887764322211 135578899999999853
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.9e-06 Score=88.18 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=109.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc-cceEEEEeccccccccCHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
...++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..- +.. .. ......+.-...+.+
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~---~~--~~~~pCg~C~~C~~i 87 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ---GG--ITATPCGVCQACRDI 87 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc---cC--CCCCCCCccHHHHHH
Confidence 44678998888888888887442 346778999999999999999988653210 000 00 000011111122222
Q ss_pred HHHHhhccccCCCCC-c-hHHHHHHh--------cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhh
Q 046970 246 LSEILEENLKIGTLN-L-PEYIKERL--------QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQV 312 (420)
Q Consensus 246 l~~l~~~~~~~~~~~-~-~~~l~~~l--------~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~ 312 (420)
-..-...-..+.... . .+.+++.+ .++.-++|+|+++.. ...+.|+..+......+.+|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 110000000111000 1 22222222 234568999999654 4566777776655556666655544 333
Q ss_pred hhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 313 FDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 313 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
... ......+++++|+.++..+.+.+.+...+..-+ .+.+..|++.++|.+.-+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 222 234578999999999999999876643332211 24567888888887755443
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.8e-06 Score=86.58 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=107.1
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+++|-+..+..|...+..+. -...+.++|++|+||||+|+.+++.+-..-.. .. .......+.......+.
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~----~~-~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALI----TE-NTTIKTCEQCTNCISFN 92 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCcccc----cc-CcCcCCCCCChHHHHHh
Confidence 44678898888888877665432 24678899999999999999999875321100 00 00000000000111111
Q ss_pred HHHhhccccCCC--CCchHHHHHH--------hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEe-ecCChhhh
Q 046970 247 SEILEENLKIGT--LNLPEYIKER--------LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIV-TTRDKQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~--~~~~~~l~~~--------l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIi-TtR~~~~~ 313 (420)
......-..++. ....+.+++. +.+++-++|+|+++.. ..++.|+..+....+.+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 000000000000 0001111111 2345678999999764 446677766655455666554 55444443
Q ss_pred hhc-CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 314 DEC-EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 314 ~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
... .....+++.+++.++..+.+...+-......+ .+.+..|++.++|.+.-+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 322 23467899999999999999887744332211 245677888999987543
No 63
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.2e-06 Score=81.37 Aligned_cols=193 Identities=14% Similarity=0.114 Sum_probs=112.1
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc----ccceEEEEeccccccccCHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE----FEGECFITNVREESERVGLVHLR 242 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~~~~~v~~~~~~~~~~~~~~l~ 242 (420)
....++|-+.....|...+..+. -...+.|+|+.|+||||+|..+++.+-.. +..... ....+-....
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-------~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-------ADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-------CCCCCCCHHH
Confidence 66789999999999988887542 34578899999999999999999976442 110000 0001111122
Q ss_pred HHHHHHHh-------hc-ccc--C--CC--CCchHHHHHHhc-----CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCc
Q 046970 243 ERVLSEIL-------EE-NLK--I--GT--LNLPEYIKERLQ-----QMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRS 301 (420)
Q Consensus 243 ~~ll~~l~-------~~-~~~--~--~~--~~~~~~l~~~l~-----~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~ 301 (420)
+.+..... .. ... . .. .+....+.+.+. ++.-++|+|+++.. ...+.|+..+.....+.
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211100 00 000 0 00 011223333332 35679999999644 34555665555444555
Q ss_pred EEEeecCCh-hhhhhc-CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 302 RIIVTTRDK-QVFDEC-EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 302 ~IIiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
.+|++|.++ .++... .....+++.+++.++..+++........ .+ .+.+..+++.++|.|.....+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~~---~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-SD---GEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 555544433 332221 2346899999999999999987532211 11 244678999999999866544
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.5e-06 Score=87.71 Aligned_cols=191 Identities=13% Similarity=0.087 Sum_probs=105.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...++||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+-..-... ....+.-.....+.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~C~~C~~i~ 83 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPCNDCENCREID 83 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccCCCCHHHHHHh
Confidence 44678999999999998886432 245678999999999999999998652210000 00000000111110
Q ss_pred HHHhhccccCCCC-Cc-hHHHHHHh--------cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhh
Q 046970 247 SEILEENLKIGTL-NL-PEYIKERL--------QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~~-~~-~~~l~~~l--------~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~ 313 (420)
..-...-..+... .. .+.+++.+ .++.-++|+|+++.. ...+.|+..+....+.+++|++|.+. .+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 0000000000000 00 11122211 245568999999653 45666766666555677766655443 222
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.. ......+++++++.++..+.+...+-..+...+ .+....|++.++|.+.-+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHH
Confidence 22 123467889999999988877665533222111 2446778888999875443
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.4e-06 Score=88.34 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|-+..++.|.+++..+. -...+.++|++|+||||+|+.++..+...... . ....+.-.....+-
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~----~-----~~pcg~C~~C~~i~ 83 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV----T-----ATPCGVCSACLEID 83 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC----C-----CCCCCCCHHHHHHh
Confidence 34678899988888888876432 24567899999999999999999876321100 0 00000000000000
Q ss_pred HHHhhccccCCCC-Cc-hHHHH---HHh-----cCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEeecCCh-hhh
Q 046970 247 SEILEENLKIGTL-NL-PEYIK---ERL-----QQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRIIVTTRDK-QVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~~-~~-~~~l~---~~l-----~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~IIiTtR~~-~~~ 313 (420)
..-...-..+... .. .+.++ +.. .+++-++|+|+++... ..+.|+..+......+.+|++|.++ .+.
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 0000000000000 00 11111 111 2456799999997553 4566666666545566666555443 232
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
.. ......+++++++.++..+.+.+.+-...... ..+.+..|++.++|.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr 215 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMR 215 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 11 11246789999999999988877653322211 12456788889999875
No 66
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.46 E-value=1.9e-06 Score=90.15 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=98.7
Q ss_pred CCCCcccccccce---eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIR---HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
..+.|+|.+..+. .|.+.+.. .....+.|+|++|+||||||+.+++.....|. .+.. . ..++..+ +
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~di-r 94 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKDL-R 94 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHHH-H
Confidence 3466899888775 35555543 34567789999999999999999987655441 1110 0 0111111 1
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHh--cCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEe--ecCChh--hhh-
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERL--QQMKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIV--TTRDKQ--VFD- 314 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIi--TtR~~~--~~~- 314 (420)
..+ +.+.+.+ .+++.+|+|||++. ..+.+.|+..+. .+..++| ||.++. +..
T Consensus 95 ~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 95 AEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred HHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 111 1111111 24567999999964 445556665443 3444554 344432 111
Q ss_pred hcCCCeEEEeCCCCHHHHHHHHHhcccC-----CCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 315 ECEVDSIYEVEGLNKDESLELFSNFAFR-----QKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 315 ~~~~~~~~~l~~L~~~ea~~L~~~~a~~-----~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.......+.+++|+.++...++.+.+-. ......-.++....|++.+.|....+.
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1112467899999999999999876531 011111123556788888888755433
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2.6e-06 Score=86.27 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=107.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. . ...+-....+.+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~----~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD----G-DCCNSCSVCESIN 83 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC----C-CCCcccHHHHHHH
Confidence 44678999999988888876432 246788999999999999999998763210 110 0 0001111111111
Q ss_pred HHHhhccccCCC-----CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhh
Q 046970 247 SEILEENLKIGT-----LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~-----~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~ 313 (420)
......-..+.. .+....+.+.+ .+++-++|+|+++.. .....|+..+......+.+|++|.+ ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000000000 00111111111 123447999998653 4455666655444455555554433 3332
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVLGS 373 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 373 (420)
.. ......+++.+++.++....+...+-.....-+ .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 223468899999999999888876533221111 2446788899999664 4444443
No 68
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.45 E-value=9.4e-07 Score=86.64 Aligned_cols=170 Identities=22% Similarity=0.346 Sum_probs=96.1
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..+.|++..+++|.+.+.. +....+.|.|+|++|+|||+||+.+++.....| +. ..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~----v~---- 197 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IR----VV---- 197 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EE----ee----
Confidence 5677888888888775531 113456789999999999999999999765432 21 00
Q ss_pred HHHHHHHHHHHHhhccccCCCCCchHHHHH-HhcCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC--C
Q 046970 238 LVHLRERVLSEILEENLKIGTLNLPEYIKE-RLQQMKVFIVLDDVNKPE----------------QLIFLVGGLDRF--G 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~ 298 (420)
...+. ....++. ......+.+ .-...+.+|+||+++... .+..++..+..+ .
T Consensus 198 ~~~l~----~~~~g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 198 GSELV----QKFIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred hHHHh----Hhhccch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 01111 1100000 000111112 223467899999986531 122333332221 2
Q ss_pred CCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCc-hhHHHHHHHHHHHhcCC
Q 046970 299 PRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQKICP-KDFLVLSKRVVDYANGN 364 (420)
Q Consensus 299 ~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~-~~~~~~~~~i~~~~~G~ 364 (420)
.+..||.||.....+.. ......+++++.+.++..++|..+..+..... .. ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 35567777765433221 12456799999999999999998774432221 22 34566666654
No 69
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=4.6e-06 Score=83.00 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=87.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.|+|.+|+|||+|+..+++.+...++ .+.|+. ...+...+...+... ....+++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~--------~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG--------KLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc--------cHHHHHHHH
Confidence 346899999999999999999998766543 234443 123344443333211 123344444
Q ss_pred cCCeEEEEEeCCCCH---H-HHHHHhcCCCC-CCCCcEEEeecC-Chhhh--------hhcCCCeEEEeCCCCHHHHHHH
Q 046970 270 QQMKVFIVLDDVNKP---E-QLIFLVGGLDR-FGPRSRIIVTTR-DKQVF--------DECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~---~-~l~~l~~~~~~-~~~g~~IIiTtR-~~~~~--------~~~~~~~~~~l~~L~~~ea~~L 335 (420)
+.+.-+|++||+... . .-+.+...+.. ...+..||+||. .+.-+ ..+.....+++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 445668999999633 1 11122222111 123456888874 33221 2233456789999999999999
Q ss_pred HHhcccCCCCCchhHHHHHHHHHHHhcCC
Q 046970 336 FSNFAFRQKICPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 364 (420)
+.+.+-.....-+ ++...-|++.+.|.
T Consensus 272 L~~~~~~~~~~l~--~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 272 ARKMLEIEHGELP--EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHhcCCCCC--HHHHHHHHhccccC
Confidence 9887743221111 23455555555554
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.42 E-value=3.7e-06 Score=84.31 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=90.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccc--eEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEG--ECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.|+|++|+|||+|++.+++.+..+++. +.++. ...+...+...+... ....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 4568999999999999999999998776533 33443 122233333333211 123344444
Q ss_pred cCCeEEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEeecCChh---------hhhhcCCCeEEEeCCCCHHHHHHH
Q 046970 270 QQMKVFIVLDDVNKP----EQLIFLVGGLDR-FGPRSRIIVTTRDKQ---------VFDECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~----~~l~~l~~~~~~-~~~g~~IIiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 335 (420)
++ .-+|+|||++.. ...+.+...+.. ...+..+|+||.... +...+.....+++++.+.++-.++
T Consensus 210 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 RS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred hc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 43 448999999532 112222221111 123455788776431 122334456889999999999999
Q ss_pred HHhcccCCC-CCchhHHHHHHHHHHHhcCChHHH
Q 046970 336 FSNFAFRQK-ICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 336 ~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
+.+.+-... ..+ ++...-|++.+.|....|
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 998874322 122 244566666666665533
No 71
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.40 E-value=7.3e-06 Score=81.08 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=90.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.|+|.+|+|||+|++.+++.+..+.+ .++++. ...+...+...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 356889999999999999999998866543 233443 122333333333211 123344444
Q ss_pred cCCeEEEEEeCCCCHH----HHHHHhcCCCC-CCCCcEEEeecCCh-h--------hhhhcCCCeEEEeCCCCHHHHHHH
Q 046970 270 QQMKVFIVLDDVNKPE----QLIFLVGGLDR-FGPRSRIIVTTRDK-Q--------VFDECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~~----~l~~l~~~~~~-~~~g~~IIiTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L 335 (420)
++ .-+|+|||++... ..+.+...+.. ...+..+|+|+... . +...+.....+++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 43 3488999995321 11222222211 12355688877642 2 122233345789999999999999
Q ss_pred HHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 336 FSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
+.+.+-.....-+ ++....|++.+.|..-.|+
T Consensus 277 l~~~~~~~~~~l~--~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP--DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 9988743322111 3556677777777766444
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=4.8e-06 Score=85.42 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=111.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccc---eEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG---ECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~---~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+...... ..-+. ..+.-...+
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~c~~C~ 93 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGVGEHCQ 93 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcccHHHH
Confidence 44679999999999988887442 24578899999999999999999876332110 00000 011111111
Q ss_pred HHHHHHhhccccCC-----CCCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec-CCh
Q 046970 244 RVLSEILEENLKIG-----TLNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT-RDK 310 (420)
Q Consensus 244 ~ll~~l~~~~~~~~-----~~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt-R~~ 310 (420)
.+.......-..+. ..+....+.+.+ .+++-++|+|+++.. ...+.|+..+....+.+.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 22111100000000 001111222222 234568999999644 44666776665555666665544 433
Q ss_pred hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 311 QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 311 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
.+... ......+++.+++.++..+.+.+.+-....... .+.+..|++.++|.+.-+..
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 33322 223478899999999999999887643322111 24577889999999865543
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=4.7e-06 Score=88.33 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=106.1
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....+||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+...... .....+.-..++.+.
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~---------~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGP---------TSTPCGECDSCVALA 82 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCC---------CCCCCcccHHHHHHH
Confidence 34678999988888888887432 24568899999999999999999876321000 000000000111111
Q ss_pred HHHhhcc--ccCC-----CCCchHHHHHH-----hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecC-Chh
Q 046970 247 SEILEEN--LKIG-----TLNLPEYIKER-----LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTR-DKQ 311 (420)
Q Consensus 247 ~~l~~~~--~~~~-----~~~~~~~l~~~-----l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR-~~~ 311 (420)
..-.... ..+. ..+....+.+. ..++.-++|||+++.. ...+.|+..+......+.+|++|. ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000000 0000 01111112221 2345668999999654 445666666665556666665554 334
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 312 VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 312 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
+... ......|++..++.++..+++.+.+-...... ..+....|++.++|.+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 4432 23457899999999999988877653222211 12345678888999874
No 74
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=1.5e-05 Score=79.32 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=76.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
..+.|+|++|+|||+|++.+++.+......+.++. ...+...+...+... ..+.++..++ .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~--------~~~~f~~~~~-~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG--------EMQRFRQFYR-N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc--------hHHHHHHHcc-c
Confidence 56889999999999999999998765434445554 122333333332211 1233444443 3
Q ss_pred eEEEEEeCCCCHH----HHHHHhcCCCC-CCCCcEEEeecCC-hh--------hhhhcCCCeEEEeCCCCHHHHHHHHHh
Q 046970 273 KVFIVLDDVNKPE----QLIFLVGGLDR-FGPRSRIIVTTRD-KQ--------VFDECEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 273 ~~LlVLDdv~~~~----~l~~l~~~~~~-~~~g~~IIiTtR~-~~--------~~~~~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
.-+|++||+.... ..+.+...++. ...|..||+||.. +. +...+..+..+++++++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4488889984321 11222222110 1235578888854 21 222233457889999999999999988
Q ss_pred ccc
Q 046970 339 FAF 341 (420)
Q Consensus 339 ~a~ 341 (420)
.+-
T Consensus 283 k~~ 285 (445)
T PRK12422 283 KAE 285 (445)
T ss_pred HHH
Confidence 763
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=7.1e-06 Score=83.74 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=108.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.++..+...... .....+.-.....+.
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~---------~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGP---------TATPCGVCESCVALA 80 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC---------CCCcccccHHHHHhh
Confidence 44678999998998988887432 24567899999999999999999875321100 000000001111111
Q ss_pred HHHhhccc--cCC-----CCCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec-CChh
Q 046970 247 SEILEENL--KIG-----TLNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT-RDKQ 311 (420)
Q Consensus 247 ~~l~~~~~--~~~-----~~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt-R~~~ 311 (420)
..-..... .++ ..+....+.+.+ .+++-++|+|+++.. ...+.|+..+......+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00000000 000 011111222221 245668999998643 45666776666555666655544 4444
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHH
Q 046970 312 VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVL 371 (420)
Q Consensus 312 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 371 (420)
+... ......+++.+++.++..+.+.+.+-.....-+ .+.+..|++.++|.+. ++..+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 4332 233578999999999999888876643222111 2445678888888774 44444
No 76
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=6.5e-06 Score=83.89 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=109.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-..... .....+.-...+.+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~---------~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAP---------TGEPCNTCEQCRKVT 83 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCC---------CCCCCcccHHHHHHh
Confidence 3456788887777777777643 124678899999999999999999876321000 000000111111111
Q ss_pred HHHhhccccCCC-----CCchHHHHHH-----hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhh
Q 046970 247 SEILEENLKIGT-----LNLPEYIKER-----LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~-----~~~~~~l~~~-----l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~ 313 (420)
......-..+.. .+....+.+. ..+++-++|+|+++.. .....|+..+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000000000 0011112221 2345679999999654 4456676666544455666665554 3333
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh-HHHHHHHHHh
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP-LALKVLGSFF 375 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~L 375 (420)
.. ......+++++++.++..+.+...+......- ..+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 12346789999999999998887664332111 1245778888999965 5777665444
No 77
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4.7e-06 Score=85.98 Aligned_cols=193 Identities=13% Similarity=0.144 Sum_probs=109.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+....... .....+.....+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRAIA 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHHHh
Confidence 34678999988888888776432 245678999999999999999998763211000 000111112222222
Q ss_pred HHHhhccccCCC-----CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhh
Q 046970 247 SEILEENLKIGT-----LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~-----~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~ 313 (420)
......-..+.. .+....+.+.+ .+++-++|+|+++.. +..+.|+..+......+.+|+++.+. .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111110000000 01111222222 235678999998644 45666766655444566666655433 332
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
.. ......+++.+++.++....+.+.+.......+ .+.+..+++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 21 223467889999999999888877643322111 24577889999998865443
No 78
>PRK06620 hypothetical protein; Validated
Probab=98.35 E-value=4e-06 Score=75.11 Aligned_cols=135 Identities=12% Similarity=0.062 Sum_probs=81.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
+.+.|+|++|+|||+|++.+++.... .++... ... . +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~~----~-----------------------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FFN----E-----------------------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hhc----h-----------------------hHHh-c
Confidence 56899999999999999987775421 222100 000 0 0011 2
Q ss_pred eEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEeecCChh-------hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCC
Q 046970 273 KVFIVLDDVNKPEQ--LIFLVGGLDRFGPRSRIIVTTRDKQ-------VFDECEVDSIYEVEGLNKDESLELFSNFAFRQ 343 (420)
Q Consensus 273 ~~LlVLDdv~~~~~--l~~l~~~~~~~~~g~~IIiTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~ 343 (420)
.-+|++||++..++ +-.+...+. ..|..+|+|++.+. +...+...-++++++++.++..+++.+.+-..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 24688899975432 223322222 24668999887432 22233455689999999999988888776422
Q ss_pred C-CCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 344 K-ICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 344 ~-~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
. ..+ ++..+-|++.+.|.--.+.-+
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 2 222 356777888887776655543
No 79
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=8.5e-06 Score=79.58 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=103.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc--------ccceEEEEeccccccccCH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE--------FEGECFITNVREESERVGL 238 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~v~~~~~~~~~~~~ 238 (420)
....++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |.....- ... ....+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~~~~ 90 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASNNSV 90 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccCCCH
Confidence 4467899999888888888643 235688899999999999999998876431 1111110 000 000111
Q ss_pred HHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecC-Chhhhhh
Q 046970 239 VHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTR-DKQVFDE 315 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR-~~~~~~~ 315 (420)
.. ..+++..+... -..+++-++++|+++.. ..++.++..+......+.+|+++. ...+...
T Consensus 91 ~~-i~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DD-IRNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HH-HHHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 11 11111111000 01234568999998643 335566554443334555555543 3233222
Q ss_pred -cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 316 -CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 316 -~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
......+++++++.++....+...+-..+..-+ .+.+..+++.++|.+-.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGALRD 205 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHHH
Confidence 223467899999999999888876643332111 25577888888887663
No 80
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=3.9e-06 Score=82.60 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=107.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc--ccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE--FEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|-+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+... ++...|..+. ....+.-...+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~ 89 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRD 89 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHH
Confidence 44678998888888888877442 24568899999999999999999876331 1111111000 000111111111
Q ss_pred HHHHHhhccccCC--C---CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec-CChh
Q 046970 245 VLSEILEENLKIG--T---LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT-RDKQ 311 (420)
Q Consensus 245 ll~~l~~~~~~~~--~---~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt-R~~~ 311 (420)
+.......-.... . .+....+.+.+ .+.+-++|+|+++.. ..++.++..+....+.+.+|++| +...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1111000000000 0 11122222223 245668999998644 45666666665545566665554 4333
Q ss_pred hhhhc-CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 312 VFDEC-EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 312 ~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
+.... .....+++.+++.++..+.+...+-.....- ..+.+..+++.++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i--~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV--DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 33221 1235789999999999988877653222111 1255788999999987533
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.33 E-value=2.5e-06 Score=90.43 Aligned_cols=169 Identities=13% Similarity=0.185 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhhcccccccCCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-----c-
Q 046970 147 LVDEIVKDIMKKLKDKLLSRDFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-----F- 220 (420)
Q Consensus 147 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f- 220 (420)
.+++....+.....+. ..+.++||+.+++.+.+.|... ...-+.++|++|+|||++|+.+++++... +
T Consensus 164 ~l~~~~~~l~~~~r~~----~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNG----KIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHHhcC----CCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 4444444444443332 3457999999999999888644 23356799999999999999999987432 1
Q ss_pred cceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHh-cCCeEEEEEeCCCCH-----------HHH
Q 046970 221 EGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERL-QQMKVFIVLDDVNKP-----------EQL 287 (420)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVLDdv~~~-----------~~l 287 (420)
...+|..+.. .+.. . . ......+. ...+.+.+ ..++.+|++|+++.. +..
T Consensus 238 ~~~~~~~~~~---------~l~a----~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~ 300 (731)
T TIGR02639 238 NAKIYSLDMG---------SLLA----G---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS 300 (731)
T ss_pred CCeEEEecHH---------HHhh----h---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH
Confidence 2334433211 1110 0 0 00000111 22222222 245789999998532 112
Q ss_pred HHHhcCCCCCCCCcEEEeecCChhhhh-------hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 288 IFLVGGLDRFGPRSRIIVTTRDKQVFD-------ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 288 ~~l~~~~~~~~~g~~IIiTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
+.|.+.+.. ...++|-+|...+.-. ....-..+++++++.++..+++....
T Consensus 301 ~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 301 NLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 233344321 2234554444321100 01122578999999999999998544
No 82
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.32 E-value=7.5e-06 Score=81.96 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=89.3
Q ss_pred CCCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccc-----cceEEEEecc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-----EGECFITNVR 230 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-----~~~~~v~~~~ 230 (420)
....+.|.+..++++.+.+.. +-...+-+.|+|++|+|||++|+.+++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345677888888887775431 122356789999999999999999999875542 1233432 11
Q ss_pred ccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHH-hcCCeEEEEEeCCCCHH--------------HHHHHhcCC
Q 046970 231 EESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKER-LQQMKVFIVLDDVNKPE--------------QLIFLVGGL 294 (420)
Q Consensus 231 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~-l~~~~~LlVLDdv~~~~--------------~l~~l~~~~ 294 (420)
.. .+ +....++.. ..... ...+++. ..+++++|+||+++..- .+..|+..+
T Consensus 259 ~~-------eL----l~kyvGete--~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GP-------EL----LNKYVGETE--RQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ch-------hh----cccccchHH--HHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 10 00 000000000 00000 1111211 13478999999996431 123344333
Q ss_pred CCCC--CCcEEEeecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 295 DRFG--PRSRIIVTTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 295 ~~~~--~g~~IIiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.... .+..||.||.....+. ....+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 3444566665443322 12346678999999999999999886
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=5.6e-06 Score=85.69 Aligned_cols=202 Identities=17% Similarity=0.183 Sum_probs=105.1
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc--cc---cceEEEE-eccccccccCHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS--EF---EGECFIT-NVREESERVGLVH 240 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f---~~~~~v~-~~~~~~~~~~~~~ 240 (420)
..+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++.... .+ ....|+. +.... ..+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~~d~~~ 227 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--RWDPRE 227 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--cCCHHH
Confidence 446799999988887766642 23567999999999999999999876532 11 1223332 11111 111111
Q ss_pred HHHHHH---------------HHHh-------------hccc---cCCCCCc--hHHHHHHhcCCeEEEEEeCCCCH--H
Q 046970 241 LRERVL---------------SEIL-------------EENL---KIGTLNL--PEYIKERLQQMKVFIVLDDVNKP--E 285 (420)
Q Consensus 241 l~~~ll---------------~~l~-------------~~~~---~~~~~~~--~~~l~~~l~~~~~LlVLDdv~~~--~ 285 (420)
+...++ .... +.-. .+..++. +..+.+.+.+++++++-|+.|.. .
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 111111 0000 0000 1122222 45566666666666665544322 1
Q ss_pred HHHHHhcCCCCCCCCcEEEe--ecCChhhhhh--cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHh
Q 046970 286 QLIFLVGGLDRFGPRSRIIV--TTRDKQVFDE--CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYA 361 (420)
Q Consensus 286 ~l~~l~~~~~~~~~g~~IIi--TtR~~~~~~~--~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~ 361 (420)
.++.+...+....+...+++ ||++...... ......+.+.+++.++..+++.+.+-.....- ..+..+.|.+++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L~~ys 385 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELIARYT 385 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHCC
Confidence 23333222222223333444 5665432111 11234678999999999999998764322111 124556666666
Q ss_pred cCChHHHHHHHHH
Q 046970 362 NGNPLALKVLGSF 374 (420)
Q Consensus 362 ~G~PLal~~~~~~ 374 (420)
..-+.++..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 5557777776544
No 84
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.30 E-value=8.2e-06 Score=87.40 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhhhcccccccCCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc------
Q 046970 147 LVDEIVKDIMKKLKDKLLSRDFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF------ 220 (420)
Q Consensus 147 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------ 220 (420)
.+++....+.....+. ..+.++||+.++.++...|.... ..-+.++|++|+||||||+.+++++....
T Consensus 169 ~l~~~~~~L~~~~r~~----~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQAREG----KIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHhcCC----CCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 4444444444333332 44679999999999988776432 33556999999999999999999874431
Q ss_pred cceEEEEeccccc----cccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh-cCCeEEEEEeCCCCHH---------H
Q 046970 221 EGECFITNVREES----ERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL-QQMKVFIVLDDVNKPE---------Q 286 (420)
Q Consensus 221 ~~~~~v~~~~~~~----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVLDdv~~~~---------~ 286 (420)
...+|..++.... ....+..-+++++ .+.- .+++++|++|+++... +
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii-------------------~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d 303 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVI-------------------DEVKASPQPIILFIDEAHTLIGAGGQAGQGD 303 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHH-------------------HHHHhcCCCeEEEEeChHHhccCCCcccccc
Confidence 1223332222111 0011111111121 1111 2468999999984431 1
Q ss_pred H-HHHhcCCCCCCCCcEEEeecCChhhhh-------hcCCCeEEEeCCCCHHHHHHHHHhc
Q 046970 287 L-IFLVGGLDRFGPRSRIIVTTRDKQVFD-------ECEVDSIYEVEGLNKDESLELFSNF 339 (420)
Q Consensus 287 l-~~l~~~~~~~~~g~~IIiTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 339 (420)
. ..|.+.+. ....++|-||...+.-. .......+.+++++.+++.+++...
T Consensus 304 ~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 304 AANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 1 12334432 12345565555422100 0112368899999999999997543
No 85
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.1e-05 Score=79.00 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=104.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|-+..+..|.+.+..+. -...+.++|+.|+||||+|+.++..+...-... ..+.+...-...+.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---------~~pc~~c~nc~~i~ 83 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---------GEPCGKCENCVEID 83 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---------CCCCCccHHHHHHh
Confidence 34668899988888888886432 345678899999999999999998753210000 00000000000000
Q ss_pred HHHhhccccC---C--CCCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec-CChhhh
Q 046970 247 SEILEENLKI---G--TLNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT-RDKQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~---~--~~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt-R~~~~~ 313 (420)
..-...-..+ . ..+....+.+.+ .+++-++|+|+++.. ...+.|+..+....+...+|++| +...+.
T Consensus 84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 0000000000 0 000011222222 245679999998644 34566665555444455555544 433332
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
.. ......+++.+++.++....+...+-...... ..+.+..+++.++|.+..+..+
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 22346789999999999988887653322111 1245677888899987644433
No 86
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=1.7e-05 Score=80.53 Aligned_cols=131 Identities=14% Similarity=0.232 Sum_probs=78.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 270 (420)
..+.|+|..|.|||.|+..+++.....+. .+.++. ...+...+...+... ..+.+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~--------~~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG--------KGDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc--------cHHHHHHHhh
Confidence 45899999999999999999998765432 234443 223333333332211 1223444444
Q ss_pred CCeEEEEEeCCCCH---HH-HHHHhcCCCC-CCCCcEEEeecCCh---------hhhhhcCCCeEEEeCCCCHHHHHHHH
Q 046970 271 QMKVFIVLDDVNKP---EQ-LIFLVGGLDR-FGPRSRIIVTTRDK---------QVFDECEVDSIYEVEGLNKDESLELF 336 (420)
Q Consensus 271 ~~~~LlVLDdv~~~---~~-l~~l~~~~~~-~~~g~~IIiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 336 (420)
+ .=+|+|||+... +. -+.|...++. ...+..|||||+.. .+...+...-+++|++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 357889999432 11 1222222211 12456688888753 22333446678899999999999999
Q ss_pred HhcccC
Q 046970 337 SNFAFR 342 (420)
Q Consensus 337 ~~~a~~ 342 (420)
.+.+-.
T Consensus 456 ~kka~~ 461 (617)
T PRK14086 456 RKKAVQ 461 (617)
T ss_pred HHHHHh
Confidence 887743
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.25 E-value=2e-05 Score=73.10 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=70.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc--cceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF--EGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKER 268 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 268 (420)
....+.++|++|+||||+|+.+++.+...- ....++. .. ..+ +.....++ . ...+++.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~----~~~----l~~~~~g~------~--~~~~~~~ 100 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VE----RAD----LVGEYIGH------T--AQKTREV 100 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ec----HHH----hhhhhccc------h--HHHHHHH
Confidence 345688999999999999999998753211 1112222 10 011 11111110 0 1111222
Q ss_pred hc-CCeEEEEEeCCCC----------HHHHHHHhcCCCCCCCCcEEEeecCChhh---hh-----hcCCCeEEEeCCCCH
Q 046970 269 LQ-QMKVFIVLDDVNK----------PEQLIFLVGGLDRFGPRSRIIVTTRDKQV---FD-----ECEVDSIYEVEGLNK 329 (420)
Q Consensus 269 l~-~~~~LlVLDdv~~----------~~~l~~l~~~~~~~~~g~~IIiTtR~~~~---~~-----~~~~~~~~~l~~L~~ 329 (420)
+. ...-+|++|+++. .+.++.++..+........+|+++..... .. .......+++++++.
T Consensus 101 ~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred HHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence 21 1235889999964 23455566555443334455555543221 00 011345689999999
Q ss_pred HHHHHHHHhccc
Q 046970 330 DESLELFSNFAF 341 (420)
Q Consensus 330 ~ea~~L~~~~a~ 341 (420)
++..+++.+.+.
T Consensus 181 ~el~~Il~~~~~ 192 (261)
T TIGR02881 181 EELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999987774
No 88
>PF14516 AAA_35: AAA-like domain
Probab=98.25 E-value=5.6e-05 Score=72.52 Aligned_cols=203 Identities=13% Similarity=0.180 Sum_probs=118.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccc--ccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESE--RVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~--~~~~~~l~~~ 244 (420)
+++..|.|...-+++.+.|.. ....+.|.|+-.+|||+|...+.+.....--..++++ +..... ..+...+.+.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHH
Confidence 556778888555555555542 2468999999999999999999988765422344443 333222 2345555555
Q ss_pred HHHHHhhccc-----------cCCCCCc-hHHHHHHh-c--CCeEEEEEeCCCCHHH----HHHHhcCCC-------CCC
Q 046970 245 VLSEILEENL-----------KIGTLNL-PEYIKERL-Q--QMKVFIVLDDVNKPEQ----LIFLVGGLD-------RFG 298 (420)
Q Consensus 245 ll~~l~~~~~-----------~~~~~~~-~~~l~~~l-~--~~~~LlVLDdv~~~~~----l~~l~~~~~-------~~~ 298 (420)
+...+...-. ....... ...+.+.+ . +++++|++|+++..-. .+++++.+. ...
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 5444432211 1111112 33444432 2 5799999999964321 122222211 000
Q ss_pred --CCcEE-EeecCChhhh-----hhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 299 --PRSRI-IVTTRDKQVF-----DECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 299 --~g~~I-IiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
..-++ ++.+...... ........++|++++.+|...|+.++... ... ...++|...+||||.-+..
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~---~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FSQ---EQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CCH---HHHHHHHHHHCCCHHHHHH
Confidence 11122 2222111111 11234567899999999999999887522 121 2278999999999999999
Q ss_pred HHHHhcCCC
Q 046970 371 LGSFFYRKS 379 (420)
Q Consensus 371 ~~~~L~~~~ 379 (420)
++..+....
T Consensus 239 ~~~~l~~~~ 247 (331)
T PF14516_consen 239 ACYLLVEEQ 247 (331)
T ss_pred HHHHHHHcc
Confidence 999997653
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.4e-05 Score=81.07 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=103.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+-..-....+ ... ..+...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~--------~pC---~~C~~~- 82 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL--------EPC---QECIEN- 82 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC--------Cch---hHHHHh-
Confidence 3466889988888888888643 235677899999999999999999865221000000 000 000000
Q ss_pred HHHhhccc--cCC-----CCCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEe-ecCChh
Q 046970 247 SEILEENL--KIG-----TLNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIV-TTRDKQ 311 (420)
Q Consensus 247 ~~l~~~~~--~~~-----~~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIi-TtR~~~ 311 (420)
...... ... ..+....+.+.+ .+++-++|+|+++.. .....|+..+......+.+|+ |+....
T Consensus 83 --~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 83 --VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred --hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 000000 000 001112222222 245669999998643 456667766655445555554 444444
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 312 VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 312 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
+... ......+++.+++.++..+.+...+-....... .+.+..+++.++|.+.
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id--~eAl~~LA~lS~GslR 214 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE--KNALKLIAKLSSGSLR 214 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 4322 233478999999999999888775532221111 2446788888988764
No 90
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.23 E-value=8.4e-06 Score=77.89 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=84.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.....+ ..+. ... .....+ +..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~----~~~~~i-~~~l 88 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD----CRIDFV-RNRL 88 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc----ccHHHH-HHHH
Confidence 4467899999888888888743 2356777799999999999999998763221 2222 111 111111 1111
Q ss_pred HHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEeecCChhhhhh--cCCCeE
Q 046970 247 SEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE--CEVDSI 321 (420)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~--~~~~~~ 321 (420)
....... .+...+-++|+|+++.. +....+...+.....++++|+||........ ......
T Consensus 89 ~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 89 TRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1111000 01134568999999654 2222333323334567788888865432111 122356
Q ss_pred EEeCCCCHHHHHHHHH
Q 046970 322 YEVEGLNKDESLELFS 337 (420)
Q Consensus 322 ~~l~~L~~~ea~~L~~ 337 (420)
+.++..+.++..+++.
T Consensus 155 i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 155 IDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 7888888888776654
No 91
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.3e-05 Score=80.65 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=106.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc--ccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE--FEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|..+.. ...+--...+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHHHH
Confidence 4467899998888888877643 224568899999999999999999876321 11111111000 01111111111
Q ss_pred HHHHHhhccccCC--C---CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec-CChh
Q 046970 245 VLSEILEENLKIG--T---LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT-RDKQ 311 (420)
Q Consensus 245 ll~~l~~~~~~~~--~---~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt-R~~~ 311 (420)
+.......-..+. . .+....+.+.+ .+.+-++|+|+++.. ...+.|+..+....+.+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1110000000000 0 11111222222 234568899998654 34666766665544555555444 4334
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 312 VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 312 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
+... ......+++.+++.++....+.+.+-.....- ..+.+..+++.++|..-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 4332 23457899999999999888877653222111 12457788999999665
No 92
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=4.3e-05 Score=76.24 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=103.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...+++|.+..+..|.+.+..+. -...+.++|++|+||||+|+.+++.+...-... +. ...+.......+-
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~----~~----~~c~~c~~C~~i~ 85 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE----DQ----EPCNQCASCKEIS 85 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc----CC----CCCcccHHHHHHh
Confidence 44679999999888888886432 246788999999999999999998753210000 00 0000000000000
Q ss_pred HHHhhccccC---CC--CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhh
Q 046970 247 SEILEENLKI---GT--LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~---~~--~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~ 313 (420)
..-...-... .. .+....+.+.+ .+.+-++|+|+++.. +..+.|+..+......+.+|++|.+ ..+.
T Consensus 86 ~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 86 SGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred cCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 0000000000 00 00111111111 245678999998644 3455566555544456666665543 3332
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
.. ......+++++++.++..+.+...+-..+..- ..+.+..+++.++|.+.
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLR 217 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 22 22346789999999999988887653322111 12457788899999764
No 93
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=6.4e-05 Score=71.75 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=61.3
Q ss_pred CeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEeecCChhh-hhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCc
Q 046970 272 MKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIVTTRDKQV-FDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICP 347 (420)
Q Consensus 272 ~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIiTtR~~~~-~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 347 (420)
++-++|+|+++. ......|+..+....+++.+|+||.+... ++. ......+.+.+++.+++.+.+..... ...+
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--~~~~ 183 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP--ESDE 183 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc--cCCh
Confidence 344567799964 34566777766665567777777776543 322 23357789999999999999976531 1111
Q ss_pred hhHHHHHHHHHHHhcCChHHHHH
Q 046970 348 KDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 348 ~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
+.+..++..++|.|+....
T Consensus 184 ----~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 184 ----RERIELLTLAGGSPLRALQ 202 (328)
T ss_pred ----HHHHHHHHHcCCCHHHHHH
Confidence 2345778889999975443
No 94
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.3e-05 Score=77.88 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=106.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc-cccc--eEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS-EFEG--ECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~--~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....++|-+...+.|...+..+. -.....++|+.|+||||+|+.+++.+-. .... .|-. .....
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~------------C~~C~ 78 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT------------CIQCQ 78 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc------------cHHHH
Confidence 44678998888888888876432 3456789999999999999999987521 1100 0000 00000
Q ss_pred HHHHHHhhccccCCCCC-c-hHHHHHHh--------cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 244 RVLSEILEENLKIGTLN-L-PEYIKERL--------QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~-~-~~~l~~~l--------~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
.+.......-....... . .+.+++.+ .+++-++|+|+++.. +..+.|+..+....+.+++|++|.+..
T Consensus 79 ~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 79 SALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred HHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 00000000000000000 0 11111111 135668999999654 445666666655556777777666542
Q ss_pred -hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 312 -VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 312 -~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
+... ......+++.+++.++..+.+...+-..+..-. .+.+..|++.++|.+.-+..
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHH
Confidence 2111 123478899999999999988776533222111 24567888889988854443
No 95
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=4.1e-05 Score=78.24 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=107.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEEeccccccccCHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
....++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.. -... .+.+.-...+.+
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~----------~pC~~C~~C~~i 82 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP----------MPCGECSSCKSI 82 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC----------CCCccchHHHHH
Confidence 44678999988888888887432 35678899999999999999999875321 0000 000000001111
Q ss_pred HHHHhhccccCCCCC-c-hHHHHHH--------hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hh
Q 046970 246 LSEILEENLKIGTLN-L-PEYIKER--------LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QV 312 (420)
Q Consensus 246 l~~l~~~~~~~~~~~-~-~~~l~~~--------l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~ 312 (420)
.......-..+.... . .+.+++. ..+++-++|+|+++.. ...+.|+..+....+.+.+|.+|.+. .+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 000000000000000 1 1222211 1345668999999644 44677777766555666666655443 33
Q ss_pred hhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 313 FDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 313 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
... ......+++.+++.++..+.+...+......-+ .+.+..|++.++|.+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id--~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE--DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 222 223467899999999999888876643332211 245677888888887543
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.9e-05 Score=81.59 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=107.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+.....|..++..+. -...+.++|+.|+||||+|+.+++.+-....... .....+.....+.+.
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-------~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-------TPEPCGKCELCRAIA 85 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-------CCCCCcccHHHHHHh
Confidence 44678999988888888887442 2356789999999999999999997633210000 000111112222222
Q ss_pred HHHhhccccCCC-CCc-hHHHHH---Hh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhh
Q 046970 247 SEILEENLKIGT-LNL-PEYIKE---RL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~-~~~-~~~l~~---~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~ 313 (420)
......-..... ... .+.+++ .+ .+++-++|+|+++.. +..+.|+..+......+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111110000000 001 222222 22 234568999999754 44666766665544555555544443 333
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.. ......+++.+++.++....+.+.+......-. .+.+..|++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 22 223577889999999988888776633221111 2447788899999876444
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.8e-05 Score=77.35 Aligned_cols=189 Identities=13% Similarity=0.140 Sum_probs=106.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+...+.|.+.+..+. -...+.++|+.|+||||+|+.++..+-..-.. ...+.+.......+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~---------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP---------DGEPCNECEICKAIT 83 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---------CCCCCCccHHHHHHh
Confidence 45679999999999988887542 35677889999999999999999865221000 000011111111221
Q ss_pred HHHhhccccCCC-----CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeec-CChhhh
Q 046970 247 SEILEENLKIGT-----LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTT-RDKQVF 313 (420)
Q Consensus 247 ~~l~~~~~~~~~-----~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTt-R~~~~~ 313 (420)
......-..++. .+....+.+.. .++.-++|+|+++.. .....|+..+......+.+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000000100 01112222221 345678999999754 45666776665444455555444 433333
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
.. ......+++.+++.++..+.+...+-......+ .+.+..|++.++|.+.-
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 22 223467889999999999888876633222111 24566788888887653
No 98
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.13 E-value=2.3e-05 Score=84.23 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcccccccCCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 147 LVDEIVKDIMKKLKDKLLSRDFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 147 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.+++....+.....+. ..+.++||+.+++++.+.|.... ...+.++|++|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~~----~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQG----KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhcC----CCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4444444444333332 34579999999999999886532 335669999999999999999998743
No 99
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.12 E-value=2.1e-05 Score=76.97 Aligned_cols=171 Identities=18% Similarity=0.279 Sum_probs=93.5
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
.++.|.+...++|.+.+.. +-...+-+.|+|++|+|||+||+.+++.....| ..+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~----~----- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV----G----- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe----h-----
Confidence 4566666666666554321 113467899999999999999999998764433 1111 0
Q ss_pred HHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC--C
Q 046970 238 LVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKPE----------------QLIFLVGGLDRF--G 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~ 298 (420)
..+. ....++. ... .+.+.......+.+|++|+++... .+..++..+..+ .
T Consensus 213 -s~l~----~k~~ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFV----QKYLGEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHH----HHhcchh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 0111 1111100 001 122222334578999999975320 123333333221 2
Q ss_pred CCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCCC-CchhHHHHHHHHHHHhcCCh
Q 046970 299 PRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQKI-CPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 299 ~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 365 (420)
.+..||.||.....+.. ......++++..+.++..++|..+...... ...+ ..++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 35668888875543322 235677899999999988888866533221 1222 345566665553
No 100
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.11 E-value=3.9e-05 Score=74.28 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=83.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 270 (420)
....+.|||..|.|||.|++++++......+....+. . ........+...+... ..+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~~--------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRDN--------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHhh--------hHHHHHHhh-
Confidence 3678999999999999999999998877766443333 1 1223333333333321 144455555
Q ss_pred CCeEEEEEeCCCCH----HHHHHHhcCCCCC-CCCcEEEeecCCh---------hhhhhcCCCeEEEeCCCCHHHHHHHH
Q 046970 271 QMKVFIVLDDVNKP----EQLIFLVGGLDRF-GPRSRIIVTTRDK---------QVFDECEVDSIYEVEGLNKDESLELF 336 (420)
Q Consensus 271 ~~~~LlVLDdv~~~----~~l~~l~~~~~~~-~~g~~IIiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 336 (420)
.-=++++||++-. ..-+.+...++.. ..|..||+|++.. .+......+-++++.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 3448899998432 1122333322211 2444899998642 23334456788999999999999999
Q ss_pred Hhccc
Q 046970 337 SNFAF 341 (420)
Q Consensus 337 ~~~a~ 341 (420)
.+.+-
T Consensus 254 ~kka~ 258 (408)
T COG0593 254 RKKAE 258 (408)
T ss_pred HHHHH
Confidence 88663
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.10 E-value=3.2e-05 Score=63.39 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEeccCcchHHHHHHHHHHHhh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.5e-05 Score=78.50 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=104.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEEeccccccccCHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
...+++|-+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. ... ....+.......+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~----------~~~c~~c~~c~~i 82 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT----------AEPCNVCPPCVEI 82 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC----------CCCCCccHHHHHH
Confidence 4467999998888888887643 224567899999999999999999875321 000 0000000111111
Q ss_pred HHHHhhccccCC---C--CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecC-Chhh
Q 046970 246 LSEILEENLKIG---T--LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTR-DKQV 312 (420)
Q Consensus 246 l~~l~~~~~~~~---~--~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR-~~~~ 312 (420)
...-...-..+. + .+....+.+.+ .++.-++|+|+++.. ...+.|+..+....+.+.+|++|. ...+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000000000000 0 00112222222 234568999999654 345666666655455666665444 3434
Q ss_pred hhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh-HHHHHH
Q 046970 313 FDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP-LALKVL 371 (420)
Q Consensus 313 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 371 (420)
... ......+++.+++.++....+...+-.....-+ .+.+..|++.++|.. .|+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~--~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS--DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 223467889999999988888765532221111 244667888888865 344444
No 103
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=5.4e-06 Score=79.34 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=62.1
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc-cccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCC
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS-EFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTL 259 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~ 259 (420)
+.+++.. -...+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++. ...+.++++.+...+.....+....
T Consensus 159 vID~l~P-IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 159 IIDLIAP-IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeecc-cccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4444432 234577889999999999999999998754 69999999866552 2356777777753222111111110
Q ss_pred C------c-hHHHHHH-hcCCeEEEEEeCCCC
Q 046970 260 N------L-PEYIKER-LQQMKVFIVLDDVNK 283 (420)
Q Consensus 260 ~------~-~~~l~~~-l~~~~~LlVLDdv~~ 283 (420)
. . .+..+.. ..+++++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 0 0 1111222 256899999999853
No 104
>CHL00176 ftsH cell division protein; Validated
Probab=98.09 E-value=1.9e-05 Score=81.73 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=93.8
Q ss_pred CCcccccccceeeeccc---cc-------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCH
Q 046970 169 TGSVGVNSRIRHIKSLL---HL-------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGL 238 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L---~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 238 (420)
.++.|.+...+++.+.+ .. +....+-+.|+|++|+|||+||+.++...... |+. .+ .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is----~ 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS----G 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----H
Confidence 45666665555554433 11 11224568999999999999999999875322 222 10 0
Q ss_pred HHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC--CC
Q 046970 239 VHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF--GP 299 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~ 299 (420)
..+.... .+. .... ...+.......+++|++||++.. ..+..++..+..+ ..
T Consensus 250 s~f~~~~----~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 250 SEFVEMF----VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHHh----hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 0111100 000 0011 23344444567899999999543 1234444333222 23
Q ss_pred CcEEEeecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC
Q 046970 300 RSRIIVTTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG 363 (420)
Q Consensus 300 g~~IIiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G 363 (420)
+..||.||.....+. ....+..+.++..+.++-.++++.++-.....+ ......+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~---d~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP---DVSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch---hHHHHHHHhcCCC
Confidence 556676776544322 223457889999999999999988774322111 1234566777766
No 105
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.09 E-value=5.4e-06 Score=75.78 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=59.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc-cccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCC------c-h
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS-EFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLN------L-P 262 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~------~-~ 262 (420)
..+.++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ..++.++++.+...+.....+..... . .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999997644 68889998854432 24677787777333222211111110 1 1
Q ss_pred HHHHHH-hcCCeEEEEEeCCCCH
Q 046970 263 EYIKER-LQQMKVFIVLDDVNKP 284 (420)
Q Consensus 263 ~~l~~~-l~~~~~LlVLDdv~~~ 284 (420)
...... -.+++++|++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2468999999998543
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.08 E-value=1.2e-05 Score=86.36 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=83.8
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-----c-cceEEEEeccccccccCHHHH
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-----F-EGECFITNVREESERVGLVHL 241 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f-~~~~~v~~~~~~~~~~~~~~l 241 (420)
...++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++... . ...+|..+....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l--------- 246 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL--------- 246 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH---------
Confidence 3569999999999999987542 3345799999999999999999986432 1 233443322111
Q ss_pred HHHHHHHHhhccccCCCCCc-hH-HHHHHhcCCeEEEEEeCCCCHH---------HHH-HHhcCCCCCCCCcEEEeecCC
Q 046970 242 RERVLSEILEENLKIGTLNL-PE-YIKERLQQMKVFIVLDDVNKPE---------QLI-FLVGGLDRFGPRSRIIVTTRD 309 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~~-~~-~l~~~l~~~~~LlVLDdv~~~~---------~l~-~l~~~~~~~~~g~~IIiTtR~ 309 (420)
. .+... ....+. .. .+.+.-..++.+|++|+++..- +.. -|.+.+. ....++|.+|..
T Consensus 247 ~-------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 247 L-------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred h-------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 0 00000 000111 11 1222223468999999984221 122 2223332 123455555554
Q ss_pred hhhhh-------hcCCCeEEEeCCCCHHHHHHHHHh
Q 046970 310 KQVFD-------ECEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 310 ~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
..... .......++++..+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 33211 011235678999999998888764
No 107
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.06 E-value=1e-05 Score=79.82 Aligned_cols=152 Identities=22% Similarity=0.345 Sum_probs=88.0
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
.++.|.+..+++|.+.+.. +-...+.+.|+|++|+|||+||+.+++.....|- .+.. +
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~----s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG----S---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec----c----
Confidence 4567888888888776532 1123567889999999999999999998755431 1110 0
Q ss_pred HHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC--C
Q 046970 238 LVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKPE----------------QLIFLVGGLDRF--G 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~ 298 (420)
.+.... .+.. ... ...+.....+.+.+|+||+++... .+..++..+..+ .
T Consensus 252 --eL~~k~----~Ge~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --ELIQKY----LGDG-----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhhh----cchH-----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 011100 0000 000 111222223567899999874221 122233222211 2
Q ss_pred CCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccC
Q 046970 299 PRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFR 342 (420)
Q Consensus 299 ~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~ 342 (420)
.+..||.||.....+.. ......++++..+.++..++|..+...
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 35678888875544332 124568899999999999999977633
No 108
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.04 E-value=5.4e-05 Score=70.05 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=105.7
Q ss_pred ceeeecccccC-CCCceEEEEeccCcchHHHHHHHHHHHhhccccc------eEEEEeccccccccCHHHHHHHHHHHHh
Q 046970 178 IRHIKSLLHLG-LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG------ECFITNVREESERVGLVHLRERVLSEIL 250 (420)
Q Consensus 178 l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~------~~~v~~~~~~~~~~~~~~l~~~ll~~l~ 250 (420)
++.|.++|... ....+.+.|+|.+|+|||++++++...+...++. ++.+. .....+...+...|+..+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhC
Confidence 34444444432 2346779999999999999999999876444432 23333 4456788899999999988
Q ss_pred hccccCCCCCc-hHHHHHHhcC-CeEEEEEeCCCCH-----HHHHHHhcCCCCCC---CCcEEEeecCC--------hhh
Q 046970 251 EENLKIGTLNL-PEYIKERLQQ-MKVFIVLDDVNKP-----EQLIFLVGGLDRFG---PRSRIIVTTRD--------KQV 312 (420)
Q Consensus 251 ~~~~~~~~~~~-~~~l~~~l~~-~~~LlVLDdv~~~-----~~l~~l~~~~~~~~---~g~~IIiTtR~--------~~~ 312 (420)
........... ...+.+.++. +.-+||+|++.+. .+-..++..+...+ .-+-|.+-|++ +++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 76543333333 3444456655 5669999999654 11122222211111 22334555543 233
Q ss_pred hhhcCCCeEEEeCCCCHH-HHHHHHHhccc--C-CCCCchhHHHHHHHHHHHhcCChHHHH
Q 046970 313 FDECEVDSIYEVEGLNKD-ESLELFSNFAF--R-QKICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 313 ~~~~~~~~~~~l~~L~~~-ea~~L~~~~a~--~-~~~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
... -..+.++....+ +...|+..... . .....-...++++.|...++|+.--+.
T Consensus 202 a~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred Hhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 222 245566665543 44555543321 1 111222335788999999999875544
No 109
>PRK08116 hypothetical protein; Validated
Probab=98.04 E-value=2e-05 Score=73.19 Aligned_cols=102 Identities=24% Similarity=0.268 Sum_probs=56.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
..+.|+|.+|+|||.||..+++.+..+...++++. ...++..+....... .......+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcCC
Confidence 45889999999999999999998866544455554 222333332221111 111133344555554
Q ss_pred eEEEEEeCCC--CHHH--HHHHhcCCC-CCCCCcEEEeecCCh
Q 046970 273 KVFIVLDDVN--KPEQ--LIFLVGGLD-RFGPRSRIIVTTRDK 310 (420)
Q Consensus 273 ~~LlVLDdv~--~~~~--l~~l~~~~~-~~~~g~~IIiTtR~~ 310 (420)
. ||||||+. .... ...+...++ ....+..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4 89999993 2211 122222211 113556799998743
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.04 E-value=2.6e-05 Score=84.13 Aligned_cols=152 Identities=12% Similarity=0.119 Sum_probs=84.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc------cceEEEEeccccccccCHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF------EGECFITNVREESERVGLVH 240 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~~~ 240 (420)
..+.++||+.+++++...|.... ...+.++|++|+|||+||+.++.++...+ ...+|..++..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~--------- 239 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA--------- 239 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH---------
Confidence 34579999999999999886542 34556899999999999999999874431 22333321111
Q ss_pred HHHHHHHHHhhccccCCCCCc-hHHHHHHh-c-CCeEEEEEeCCCCHH----------HHHHHhcCCCCCCCCcEEEeec
Q 046970 241 LRERVLSEILEENLKIGTLNL-PEYIKERL-Q-QMKVFIVLDDVNKPE----------QLIFLVGGLDRFGPRSRIIVTT 307 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l-~-~~~~LlVLDdv~~~~----------~l~~l~~~~~~~~~g~~IIiTt 307 (420)
+.. +... ....+. ...+.+.+ . +++.+|++|+++..- ..+.|.+.+. ....++|.+|
T Consensus 240 l~a-------~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaT 309 (852)
T TIGR03346 240 LIA-------GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGAT 309 (852)
T ss_pred Hhh-------cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeC
Confidence 100 0000 001111 12222222 2 368999999986432 1222333332 1223455444
Q ss_pred CChhhhh-------hcCCCeEEEeCCCCHHHHHHHHHhc
Q 046970 308 RDKQVFD-------ECEVDSIYEVEGLNKDESLELFSNF 339 (420)
Q Consensus 308 R~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 339 (420)
....... ....-..+.++..+.++..+++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 4332210 0112246789999999999988754
No 111
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.8e-05 Score=73.96 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=88.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
..++-|.+||+||.|||-||++++++.... |+..++ . ++.....++.. .....+.+..
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg--------S----ElVqKYiGEGa-----RlVRelF~lA 240 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG--------S----ELVQKYIGEGA-----RLVRELFELA 240 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc--------H----HHHHHHhccch-----HHHHHHHHHH
Confidence 356789999999999999999999986444 343111 1 12222222211 1133344444
Q ss_pred c-CCeEEEEEeCCCCHH----------------HHHHHhcCCCCCC--CCcEEEeecCChhh-----hhhcCCCeEEEeC
Q 046970 270 Q-QMKVFIVLDDVNKPE----------------QLIFLVGGLDRFG--PRSRIIVTTRDKQV-----FDECEVDSIYEVE 325 (420)
Q Consensus 270 ~-~~~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~g~~IIiTtR~~~~-----~~~~~~~~~~~l~ 325 (420)
+ ..++.|.+|.++... .+-.|+..+..|. .+.+||..|.-.+. +..-..+..++++
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp 320 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFP 320 (406)
T ss_pred hhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecC
Confidence 4 458999999884331 2344555555444 35678877754433 4444467788998
Q ss_pred CCCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCCh
Q 046970 326 GLNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 326 ~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~P 365 (420)
.-+.+.-.++|.-|+-+-. ...-+ .+.+++.+.|.-
T Consensus 321 lPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 321 LPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 6666667778887764322 22233 345666676664
No 112
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.99 E-value=1.8e-05 Score=75.70 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=58.5
Q ss_pred CCCcccEEecCccccccCcchHHHHHHHhhCCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEeccccccc
Q 046970 8 TKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASS 79 (420)
Q Consensus 8 ~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s 79 (420)
.....|||||||... ....++-|.-.|.-.|++||+|- .+..|+ +.+.+.+.|..++.+|.|+|||-...
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr 679 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDR 679 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHH
Confidence 456789999998753 35578888888899999999997 777775 56889999999999999999987654
No 113
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.99 E-value=0.00014 Score=68.29 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=70.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcc--ccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSE--FEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 270 (420)
..+.++|++|+|||++|+.++..+... .....|+. .+. . .++..+.+.. ...+.+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~----~l~~~~~g~~--------~~~~~~~~~ 118 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----D----DLVGQYIGHT--------APKTKEILK 118 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----H----HHhHhhcccc--------hHHHHHHHH
Confidence 358899999999999999988865432 11122333 111 1 1222221111 011112221
Q ss_pred -CCeEEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEeecCChhhhhh--------cCCCeEEEeCCCCHH
Q 046970 271 -QMKVFIVLDDVNKP-----------EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE--------CEVDSIYEVEGLNKD 330 (420)
Q Consensus 271 -~~~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~--------~~~~~~~~l~~L~~~ 330 (420)
...-+|+||++... +..+.|+..+.....+.+||.++.....-.. ......+++++++.+
T Consensus 119 ~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 119 RAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred HccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 13468999998632 2234444444433455667776643221110 113467899999999
Q ss_pred HHHHHHHhcc
Q 046970 331 ESLELFSNFA 340 (420)
Q Consensus 331 ea~~L~~~~a 340 (420)
|..+++...+
T Consensus 199 dl~~I~~~~l 208 (284)
T TIGR02880 199 ELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHH
Confidence 9999988776
No 114
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00011 Score=69.77 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=107.8
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc---------------cccceEEEEeccccc
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS---------------EFEGECFITNVREES 233 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---------------~f~~~~~v~~~~~~~ 233 (420)
..++|-+...+.+.+.+..+. -.....++|+.|+||+++|..+++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 457888888888888776432 2578999999999999999999987522 12333444311000
Q ss_pred cccCHHHHHHHHHHHHhhccccCCCCC--chHHHHHHhc-----CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEE
Q 046970 234 ERVGLVHLRERVLSEILEENLKIGTLN--LPEYIKERLQ-----QMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRII 304 (420)
Q Consensus 234 ~~~~~~~l~~~ll~~l~~~~~~~~~~~--~~~~l~~~l~-----~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~II 304 (420)
.... +....+.............. ....+.+.+. +++-++|+|+++.. .....|+..+...+ .+.+|
T Consensus 82 ~g~~---~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKL---ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccc---cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000 00000000000000000111 1223333333 45678999998644 34556666655544 44555
Q ss_pred eecCCh-hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 305 VTTRDK-QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 305 iTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
++|.+. .+++. ......+++.+++.++..+.+......... . .....++..++|.|.....+-
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-~----~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-N----INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-h----hHHHHHHHHcCCCHHHHHHHH
Confidence 554443 44332 234578999999999999999876521110 1 113578899999997655433
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00015 Score=75.10 Aligned_cols=191 Identities=14% Similarity=0.096 Sum_probs=104.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|-+...+.|...+..+. -...+.++|+.|+||||+|+.++..+.......-. . ..+.-.-...+-
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~-~-------~Cg~C~sC~~~~ 85 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADG-E-------ACNECESCVAFN 85 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC-C-------CCCcchHHHHHh
Confidence 34678999988888888886432 24668899999999999999999876311000000 0 000000000000
Q ss_pred HHHhhc--cccCCCCCchHHHHHH--------hcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEe-ecCChhhh
Q 046970 247 SEILEE--NLKIGTLNLPEYIKER--------LQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIV-TTRDKQVF 313 (420)
Q Consensus 247 ~~l~~~--~~~~~~~~~~~~l~~~--------l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIi-TtR~~~~~ 313 (420)
..-... ..+..+....+.+++. ..+++-++|+|+++.. ...+.|+..+......+.+|+ |+....+.
T Consensus 86 ~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 000000 0000000001111111 1234568899998654 446666666655455666555 44444444
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
.. ......+++++++.++....+.+.+-......+ .+.+..|++.++|...-+
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMRDA 219 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 32 234578999999999999988876633322111 245678888888876533
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.98 E-value=0.00025 Score=63.70 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=39.8
Q ss_pred CCCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..+.++|.|.+.+.|.+-... ......-+.+||..|.|||+|++.+.+.....
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 457789999988888663321 12235567899999999999999999987554
No 117
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.98 E-value=2.6e-05 Score=71.36 Aligned_cols=181 Identities=15% Similarity=0.204 Sum_probs=105.2
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc--cccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS--EFEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
..+.++|-+..+.-|.+.+.. ...+....+|++|.|||+-|+.++..+-. -|++++-=.|. +...+..-....
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvvr~K 108 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVVREK 108 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccchhhh
Confidence 456788888888888887764 35778999999999999999999987633 34443321111 111111100000
Q ss_pred H--HHHHhhccccCCCCCchHHHHHHhcCCe-EEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cC
Q 046970 245 V--LSEILEENLKIGTLNLPEYIKERLQQMK-VFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CE 317 (420)
Q Consensus 245 l--l~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~ 317 (420)
+ +..+........ .. ...+ -.+|||+++.. +.|..|......+...++.|..+.... +... ..
T Consensus 109 ik~fakl~~~~~~~~---------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSD---------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred hcCHHHHhhcccccc---------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0 001000000000 00 0122 58999999765 446777766666666777554444332 2111 12
Q ss_pred CCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC
Q 046970 318 VDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 318 ~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 364 (420)
....+..++|..++..+-+...+-.++..-+ .+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCc
Confidence 3356789999999999988888754443222 25567888888775
No 118
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.97 E-value=0.00021 Score=67.49 Aligned_cols=198 Identities=19% Similarity=0.164 Sum_probs=117.2
Q ss_pred CCCCcccccccceeeecccccCCCC-ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPD-FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
..+.+.+|+.++..+..++...+.. +..|.|+|..|.|||.+.+++.+.... ..+|+. .-+.+....+++.|
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHH
Confidence 3467899999999999999765543 556699999999999999999987622 457887 55567788888888
Q ss_pred HHHHh-hccccC-CCC--Cc----hHHHHH--Hhc--CCeEEEEEeCCCCHHHHHH-----Hh---cCCCCCCCCcEEEe
Q 046970 246 LSEIL-EENLKI-GTL--NL----PEYIKE--RLQ--QMKVFIVLDDVNKPEQLIF-----LV---GGLDRFGPRSRIIV 305 (420)
Q Consensus 246 l~~l~-~~~~~~-~~~--~~----~~~l~~--~l~--~~~~LlVLDdv~~~~~l~~-----l~---~~~~~~~~g~~IIi 305 (420)
+.++. ...... ... +. ...+.+ ... ++.++|||||++...+.+. +. ..++ .+.. .|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEE
Confidence 88874 221111 111 11 222222 122 3589999999976654322 11 1112 1233 333
Q ss_pred ecCCh---hhhhhcCC--CeEEEeCCCCHHHHHHHHHhcccCCCCC--chhHHH-HHHHHHHHhcCChHHHHHHHHHh
Q 046970 306 TTRDK---QVFDECEV--DSIYEVEGLNKDESLELFSNFAFRQKIC--PKDFLV-LSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 306 TtR~~---~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~a~~~~~~--~~~~~~-~~~~i~~~~~G~PLal~~~~~~L 375 (420)
++-.. .-....+. .-.+..+.-+.+|..+++.+.-.+.... -..+.. +..-....|+ -+-.+..+.+..
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 33221 11221232 3456788999999999997654221110 122222 2334445565 666666666554
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.97 E-value=4.5e-05 Score=77.48 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCcccccccceeeecccc---c-------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 168 FTGSVGVNSRIRHIKSLLH---L-------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..+++|.+...+++.+++. . +....+-+.++|++|+|||+||+.+++.....| +. .+
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----
Confidence 3556676665554443322 1 122345688999999999999999998753322 21 10
Q ss_pred HHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC--C
Q 046970 238 LVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF--G 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~ 298 (420)
...+.. ...+. .... ...+.......+.+|++|+++.. ..+..++..+..+ .
T Consensus 121 ~~~~~~----~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 GSDFVE----MFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH----HHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 011111 10000 0001 22233333456789999998442 1123343333222 2
Q ss_pred CCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC-hHHHHHH
Q 046970 299 PRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN-PLALKVL 371 (420)
Q Consensus 299 ~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 371 (420)
.+..||.||..+.. ......+..++++..+.++-.+++..+........ . .....+++.+.|. +--|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCCCHHHHHHH
Confidence 34456666665432 22223567889999999999999987763322211 1 1234677777763 3444433
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.97 E-value=1.6e-05 Score=83.68 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-----c-cceEEEEeccccccccCHHHH
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-----F-EGECFITNVREESERVGLVHL 241 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f-~~~~~v~~~~~~~~~~~~~~l 241 (420)
.+.++||+.+++++.+.|.... ..-+.|+|++|+|||+||+.+++++... + ....|.. ++..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~~- 252 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIGS- 252 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHHH-
Confidence 3569999999999999887532 2345689999999999999999875332 1 2222221 1111
Q ss_pred HHHHHHHHhhccccCCCCCc-hHHHHHHh-cCCeEEEEEeCCCCH----------HHHHH-HhcCCCCCCCCcEEEeecC
Q 046970 242 RERVLSEILEENLKIGTLNL-PEYIKERL-QQMKVFIVLDDVNKP----------EQLIF-LVGGLDRFGPRSRIIVTTR 308 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVLDdv~~~----------~~l~~-l~~~~~~~~~g~~IIiTtR 308 (420)
++ .+.. -..+.+. ...+.+.+ +.++.+|++|+++.. .+... +.+.+. ....++|-+|.
T Consensus 253 ---ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 253 ---LL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred ---Hh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 10 0000 0011111 22222223 346789999998532 12222 223322 12344555444
Q ss_pred Chhhhh-------hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 309 DKQVFD-------ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 309 ~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.+.... ....-..+++++++.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332110 01122578999999999999998543
No 121
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00039 Score=65.26 Aligned_cols=131 Identities=13% Similarity=0.134 Sum_probs=72.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc-c-cceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE-F-EGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f-~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.++|++|+||||+|+.+++..... + ...-|+. ++ ... +.....+... ......+.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~----l~~~~~g~~~----~~~~~~l~~-- 120 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDD----LVGQYIGHTA----PKTKEVLKK-- 120 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHH----HHHHHhccch----HHHHHHHHH--
Confidence 3458899999999999999999865321 1 1112332 11 111 2222211110 000111222
Q ss_pred cCCeEEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEeecCChhhhh--------hcCCCeEEEeCCCCHH
Q 046970 270 QQMKVFIVLDDVNKP-----------EQLIFLVGGLDRFGPRSRIIVTTRDKQVFD--------ECEVDSIYEVEGLNKD 330 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~--------~~~~~~~~~l~~L~~~ 330 (420)
...-+|++|+++.. +..+.|...+.....+.+||.++....+.. .......+.+++++.+
T Consensus 121 -a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 121 -AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred -ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 12359999998542 234445544443345566777765332211 1124568899999999
Q ss_pred HHHHHHHhccc
Q 046970 331 ESLELFSNFAF 341 (420)
Q Consensus 331 ea~~L~~~~a~ 341 (420)
+..+++...+-
T Consensus 200 el~~I~~~~l~ 210 (287)
T CHL00181 200 ELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999987763
No 122
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.92 E-value=2.7e-05 Score=75.01 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=61.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-------h
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-------P 262 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-------~ 262 (420)
..+.++|+|++|+|||||++.+++.+..+ |+..+|+..+++. ...+.++++.++..+.....+...... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 46789999999999999999999987555 8889999855432 246778888875544333222111110 1
Q ss_pred HHHHHH-hcCCeEEEEEeCCCCH
Q 046970 263 EYIKER-LQQMKVFIVLDDVNKP 284 (420)
Q Consensus 263 ~~l~~~-l~~~~~LlVLDdv~~~ 284 (420)
+..+.. -.+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 112222 3568999999998543
No 123
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.00019 Score=70.52 Aligned_cols=118 Identities=21% Similarity=0.223 Sum_probs=75.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCe
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMK 273 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~ 273 (420)
++.|.|+-++|||||++.+....... .+++...........+ .+.+. .+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~----------------~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLR----------------AYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHH----------------HHHHhhccCC
Confidence 99999999999999997766655443 4444422111111111 11111 1111111267
Q ss_pred EEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhh------cCCCeEEEeCCCCHHHHHHH
Q 046970 274 VFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE------CEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 274 ~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~------~~~~~~~~l~~L~~~ea~~L 335 (420)
..++||.|.....|...+..+...++. ++++|+-+...... .|....+++-||+..|-..+
T Consensus 96 ~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 96 SYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred ceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 899999999999988877776554555 78888876654322 24457789999999998653
No 124
>PRK08181 transposase; Validated
Probab=97.87 E-value=6e-05 Score=69.73 Aligned_cols=36 Identities=22% Similarity=0.078 Sum_probs=28.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..-+.|+|++|+|||.||..+++....+...+.|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 345899999999999999999997755544455554
No 125
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.85 E-value=4.4e-05 Score=62.78 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=27.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+.|+|++|+||||+++.++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999998766543344443
No 126
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.0009 Score=63.47 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=63.1
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCC
Q 046970 271 QMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKIC 346 (420)
Q Consensus 271 ~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 346 (420)
++.-++|+|+++.. .....|+..+..-.+++.+|++|.+. .+++. ......+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 34579999998654 44566776666656777777777654 34333 2345778999999999999887642 11
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHH
Q 046970 347 PKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 347 ~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
. ..+..++..++|.|+....+
T Consensus 188 ~----~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 E----RAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred h----HHHHHHHHHcCCCHHHHHHH
Confidence 1 22567889999999865543
No 127
>PRK09183 transposase/IS protein; Provisional
Probab=97.82 E-value=8.6e-05 Score=68.60 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=26.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+.|+|++|+|||+||..++.........+.++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456889999999999999999887544333344443
No 128
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.80 E-value=6.2e-05 Score=80.12 Aligned_cols=174 Identities=20% Similarity=0.255 Sum_probs=92.0
Q ss_pred CCCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER 235 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~ 235 (420)
..+++.|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.+++.....| +.+. ...
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~---- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPE---- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHH----
Confidence 345688999888888776531 113356789999999999999999998764432 1221 100
Q ss_pred cCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH-------------HHHHHHhcCCCCC-CCC
Q 046970 236 VGLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKP-------------EQLIFLVGGLDRF-GPR 300 (420)
Q Consensus 236 ~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~-------------~~l~~l~~~~~~~-~~g 300 (420)
+. ....+. .... ...+.......+.+|+||+++.. .....|+..+... ..+
T Consensus 248 -----i~----~~~~g~-----~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 248 -----IM----SKYYGE-----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -----Hh----cccccH-----HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 00 000000 0000 12222333456789999998432 1122333332221 123
Q ss_pred cEEEe-ecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh
Q 046970 301 SRIIV-TTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 301 ~~IIi-TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 365 (420)
..++| ||....-+. .......+.++..+.++-.+++..+.-...... ......+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 33444 554332211 112346778888899998888886542211111 112456677777754
No 129
>PRK12377 putative replication protein; Provisional
Probab=97.75 E-value=0.00015 Score=66.28 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=29.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+.|+|.+|+|||+||..+++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999998866554556665
No 130
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.73 E-value=0.00089 Score=67.80 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=69.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccc---------eEEEEecc-ccccccCH------------HHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG---------ECFITNVR-EESERVGL------------VHLRERVLSE 248 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~---------~~~v~~~~-~~~~~~~~------------~~l~~~ll~~ 248 (420)
....|+|+|++|+|||||.+.+....... .+ ..++.--. .......+ ..-.+..+..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 45689999999999999999997654332 11 11111000 00000011 1222222222
Q ss_pred Hhhccc----cCCCC---Cc-hHHHHHHhcCCeEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEeecCChhhhh
Q 046970 249 ILEENL----KIGTL---NL-PEYIKERLQQMKVFIVLDDV------NKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFD 314 (420)
Q Consensus 249 l~~~~~----~~~~~---~~-~~~l~~~l~~~~~LlVLDdv------~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~ 314 (420)
++-... .+..+ +. .-.+...+-.++-+||||.- +..+.++..+..+ +|+ ||+.|.|+....
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~ 500 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLD 500 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHH
Confidence 221111 11111 11 44556667778999999965 3334444444443 454 888899998887
Q ss_pred hcCCCeEEEeCC
Q 046970 315 ECEVDSIYEVEG 326 (420)
Q Consensus 315 ~~~~~~~~~l~~ 326 (420)
.. ...++.+.+
T Consensus 501 ~v-a~~i~~~~~ 511 (530)
T COG0488 501 RV-ATRIWLVED 511 (530)
T ss_pred hh-cceEEEEcC
Confidence 76 356666664
No 131
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.73 E-value=0.00015 Score=77.20 Aligned_cols=171 Identities=17% Similarity=0.242 Sum_probs=93.5
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..+.|.+...+.|.+.+.. +....+-+.++|++|+|||+||+.+++.....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~-------- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-G-------- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h--------
Confidence 4566777666666554421 112345688999999999999999999865433 1111 0
Q ss_pred HHHHHHHHHHHHhhccccCCCCCch-HHHHHHhcCCeEEEEEeCCCCH--------------HHHHHHhcCCCCC--CCC
Q 046970 238 LVHLRERVLSEILEENLKIGTLNLP-EYIKERLQQMKVFIVLDDVNKP--------------EQLIFLVGGLDRF--GPR 300 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~g 300 (420)
. .++....++.. ... ..+...-...+.+|++|+++.. ..+..++..+... ..+
T Consensus 521 -~----~l~~~~vGese-----~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 -P----EILSKWVGESE-----KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -H----HHhhcccCcHH-----HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 0 11111111100 011 1222222456899999998532 1133344443321 234
Q ss_pred cEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCCC-CchhHHHHHHHHHHHhcCCh
Q 046970 301 SRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQKI-CPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 301 ~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 365 (420)
.-||.||..+..+.. -..+..+.++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 456667765543321 235678899999999999999766532221 1112 345666676654
No 132
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.72 E-value=0.00024 Score=71.29 Aligned_cols=174 Identities=17% Similarity=0.178 Sum_probs=89.8
Q ss_pred CCcccccccceeeeccc---c-----cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHH
Q 046970 169 TGSVGVNSRIRHIKSLL---H-----LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVH 240 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L---~-----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 240 (420)
.++-|.+...+.+.... . .+-...+-+.++|++|+|||.+|+.+++.....| +..+.. .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~---------~ 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVG---------K 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhH---------H
Confidence 45667665444443211 1 1223467799999999999999999998754322 111110 0
Q ss_pred HHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH--------------HHHHHhcCCCCCCCCcEEEee
Q 046970 241 LRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE--------------QLIFLVGGLDRFGPRSRIIVT 306 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~--------------~l~~l~~~~~~~~~g~~IIiT 306 (420)
+.....++.. ......+...-...+++|++|+++..- .+..++..+.....+.-||.|
T Consensus 295 ----l~~~~vGese----~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ----LFGGIVGESE----SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ----hcccccChHH----HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1000000000 000111222223478999999985321 112222222222334456667
Q ss_pred cCChhhh-----hhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC
Q 046970 307 TRDKQVF-----DECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 307 tR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 364 (420)
|.+...+ .....+..+.++.-+.++-.++|..+..+....... ......+++.+.|.
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~Gf 428 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKF 428 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCC
Confidence 7655432 222456788999999999999998876432211000 11134566666555
No 133
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=5.6e-05 Score=77.79 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCCCcccccccceeeecccccC---CCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG---LPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
....++|-+..++++..++... ....++++|+|++|+||||+++.++..+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567889888888888887643 23457899999999999999999998653
No 134
>PRK06526 transposase; Provisional
Probab=97.70 E-value=8.8e-05 Score=68.20 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=23.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+.|+|++|+|||+||..++......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999999876543
No 135
>PRK10536 hypothetical protein; Provisional
Probab=97.68 E-value=0.00013 Score=66.35 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHH-h-hccccceEEEEecccccc-----ccCHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQ-I-SSEFEGECFITNVREESE-----RVGLVHL 241 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~v~~~~~~~~-----~~~~~~l 241 (420)
..+.+|......+..++.. ...+.+.|++|.|||+||..++.+ + ...|...+.....-...+ +.++.+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4566777777777776653 348999999999999999999874 3 444554443321111111 1122111
Q ss_pred HHH----H---HHHHhhccc-c-C--CCCCc-hHHHHHHhcCCe---EEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEE
Q 046970 242 RER----V---LSEILEENL-K-I--GTLNL-PEYIKERLQQMK---VFIVLDDVNKP--EQLIFLVGGLDRFGPRSRII 304 (420)
Q Consensus 242 ~~~----l---l~~l~~~~~-~-~--~~~~~-~~~l~~~l~~~~---~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~II 304 (420)
... + +..+.+... . . ..... .-.--.+++++. -++|+|++.+. .+...++.. .+.++++|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEE
Confidence 111 1 111111100 0 0 00000 001123456654 59999998544 556666544 46899999
Q ss_pred eecCC
Q 046970 305 VTTRD 309 (420)
Q Consensus 305 iTtR~ 309 (420)
+|--.
T Consensus 208 ~~GD~ 212 (262)
T PRK10536 208 VNGDI 212 (262)
T ss_pred EeCCh
Confidence 97753
No 136
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.002 Score=57.88 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=97.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-----hHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-----PEYI 265 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-----~~~l 265 (420)
+..++.++|.-|.|||.+++.+...+.+.=..++.++ ....+...+...+...+..... ..... ...+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~--~~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPK--VNVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCcc--chhHHHHHHHHHHH
Confidence 4569999999999999999955554433222222222 1234455566666666655221 11111 2222
Q ss_pred HHHh-cCCe-EEEEEeCCCCH--HHH---HHHhcCCCCCCCCcEEEeecCCh-------hhhhhc-CCCeE-EEeCCCCH
Q 046970 266 KERL-QQMK-VFIVLDDVNKP--EQL---IFLVGGLDRFGPRSRIIVTTRDK-------QVFDEC-EVDSI-YEVEGLNK 329 (420)
Q Consensus 266 ~~~l-~~~~-~LlVLDdv~~~--~~l---~~l~~~~~~~~~g~~IIiTtR~~-------~~~~~~-~~~~~-~~l~~L~~ 329 (420)
.... ++++ ..+++|+..+. ..+ ..|...-.....--+|+.....+ ..+... ....+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 2222 3455 89999998543 223 33332222222222344333211 001111 12234 89999999
Q ss_pred HHHHHHHHhcccCCCCCchh-HHHHHHHHHHHhcCChHHHHHHHH
Q 046970 330 DESLELFSNFAFRQKICPKD-FLVLSKRVVDYANGNPLALKVLGS 373 (420)
Q Consensus 330 ~ea~~L~~~~a~~~~~~~~~-~~~~~~~i~~~~~G~PLal~~~~~ 373 (420)
++...++..+..+...+.+- ..+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999888776443332222 235678899999999999987764
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.66 E-value=0.00041 Score=74.74 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred CCcccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHL 241 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l 241 (420)
..++|.+..++.+...+... .....++.++|++|+|||+||+.+++.+...-...+.+. +.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~------- 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFME------- 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh-------
Confidence 46889988888887766421 112357889999999999999999987643322233332 111111
Q ss_pred HHHHHHHHhhccccCCCCCchHHHHHHhcCC-eEEEEEeCCC--CHHHHHHHhcC
Q 046970 242 RERVLSEILEENLKIGTLNLPEYIKERLQQM-KVFIVLDDVN--KPEQLIFLVGG 293 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVLDdv~--~~~~l~~l~~~ 293 (420)
......+.+........+....+.+.++.+ .-+|+||+++ +......|+..
T Consensus 640 -~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~i 693 (857)
T PRK10865 640 -KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQV 693 (857)
T ss_pred -hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHH
Confidence 112223333222111111122344444333 3699999996 34444444443
No 138
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.66 E-value=0.0011 Score=61.45 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+.|.|++|+|||+||+.++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999855
No 139
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.66 E-value=0.00011 Score=66.97 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=28.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+.++|.+|+|||+||..+++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357889999999999999999998766544555554
No 140
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.00086 Score=65.01 Aligned_cols=201 Identities=16% Similarity=0.215 Sum_probs=115.8
Q ss_pred CCCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhccccc--eEEEEeccccccccCHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG--ECFITNVREESERVGLVHLR 242 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~v~~~~~~~~~~~~~~l~ 242 (420)
.+..++||+.++..+.+++.. +.+....+-|.|-+|.|||.+...++.+....... .+++. ...-.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHH
Confidence 347899999999999998854 34456788899999999999999999887665543 34444 11113344566
Q ss_pred HHHHHHHhhccccCCC-CCchHHHHHHhcC--CeEEEEEeCCCCHHH--HHHHhc--CCCCCCCCcEEEeecCCh-----
Q 046970 243 ERVLSEILEENLKIGT-LNLPEYIKERLQQ--MKVFIVLDDVNKPEQ--LIFLVG--GLDRFGPRSRIIVTTRDK----- 310 (420)
Q Consensus 243 ~~ll~~l~~~~~~~~~-~~~~~~l~~~l~~--~~~LlVLDdv~~~~~--l~~l~~--~~~~~~~g~~IIiTtR~~----- 310 (420)
..+...+......... .+....+.+...+ ..+|+|||..+.... -..+.. .+++ -+++|+|+..--.
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHH
Confidence 6666665332221111 1224444444433 368999998765432 011111 1222 2455554432111
Q ss_pred -hhhhhc-----CCCeEEEeCCCCHHHHHHHHHhcccCCC---CCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 311 -QVFDEC-----EVDSIYEVEGLNKDESLELFSNFAFRQK---ICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 311 -~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~a~~~~---~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
..+... -....+..+|.+.++..++|..+.-... ..+...+-.+++++.-.|.+-.||.+.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111111 1346778899999999999998763222 1112233345555555566666665554
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.65 E-value=0.00048 Score=73.28 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=86.7
Q ss_pred CCCcccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHH
Q 046970 168 FTGSVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVH 240 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 240 (420)
...++|-+..++.+...+... .....++.++|++|+|||+||+.++..+... .+.++ ..+.....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d-~se~~~~~---- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFD-MSEYMEKH---- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEe-Cchhhhcc----
Confidence 356788888888887766421 1124468899999999999999999877322 22222 11111111
Q ss_pred HHHHHHHHHhhccccCCCCCchHHHHHHhcCC-eEEEEEeCCCCH--HHHHHHhcCCCCC-----------CCCcEEEee
Q 046970 241 LRERVLSEILEENLKIGTLNLPEYIKERLQQM-KVFIVLDDVNKP--EQLIFLVGGLDRF-----------GPRSRIIVT 306 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVLDdv~~~--~~l~~l~~~~~~~-----------~~g~~IIiT 306 (420)
....+.+.....-..+....+.+.++.+ ..+++||+++.. +....|+..+... -.++.||+|
T Consensus 525 ----~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 525 ----TVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred ----cHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 1122222222111112223344555444 469999999643 3344444433211 123447777
Q ss_pred cCChh--hhh--------------------hc------CCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 307 TRDKQ--VFD--------------------EC------EVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 307 tR~~~--~~~--------------------~~------~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
|.... +.. .. ..+.++.+++|+.++..+++....
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 73210 000 00 134677888888888888776543
No 142
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.64 E-value=0.00016 Score=64.12 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=65.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQ 271 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~ 271 (420)
.++.|.|++|.||||++..+...+.......++.. ... ........ .....+..-..+... .+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~----e~~---~E~~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI----EDP---IEFVHESK-RSLINQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE----cCC---ccccccCc-cceeeecccCCCccCHHHHHHHHhcC
Confidence 37899999999999999998887765444444432 100 00000000 000011000011122 6778888888
Q ss_pred CeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhh
Q 046970 272 MKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVF 313 (420)
Q Consensus 272 ~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~ 313 (420)
.+=++++|++.+.+.+...+... ..|..++.|+......
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88999999998887766554432 2456688888766543
No 143
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0013 Score=63.07 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=89.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccC--C----CC--CchH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKI--G----TL--NLPE 263 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--~----~~--~~~~ 263 (420)
...+.++|+.|+||+++|..++..+--.-+.. ....+.-.-.+.+.......-..+ . .. +...
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~---------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR 94 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQG---------HKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVR 94 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHH
Confidence 56788999999999999999998752210000 000000011111111000000000 0 00 1122
Q ss_pred HHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCeEEEeCCCCHHHHHH
Q 046970 264 YIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDSIYEVEGLNKDESLE 334 (420)
Q Consensus 264 ~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~ 334 (420)
.+.+.+ .+++-++|+|+++.. .....|+..+..-.+++.+|++|.+.. +++. .+....+.+.+++.+++.+
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~ 174 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALT 174 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHH
Confidence 233332 245678999998654 456677777776667777777666543 4433 2334678999999999999
Q ss_pred HHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 335 LFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 335 L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
.+.... ..++ +.+..++..++|.|..
T Consensus 175 ~L~~~~---~~~~----~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 175 WLSREV---TMSQ----DALLAALRLSAGAPGA 200 (334)
T ss_pred HHHHcc---CCCH----HHHHHHHHHcCCCHHH
Confidence 886542 1111 2356788999999963
No 144
>PRK06921 hypothetical protein; Provisional
Probab=97.62 E-value=0.00012 Score=67.77 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=29.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
...+.++|.+|+|||+||..+++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578899999999999999999987655 44556665
No 145
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00044 Score=63.85 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=69.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh----ccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS----SEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIK 266 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~ 266 (420)
.+++.++|+||.|||+|++++++++. .+|....-+. . .-.++....+++.+.- ... .+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFsESgKl------V~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFSESGKL------VAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHhhhhhH------HHHHHHHHH
Confidence 57999999999999999999999753 3455444443 1 1222333332221111 011 34455
Q ss_pred HHhcCC--eEEEEEeCCCCHHH-----------------HHHHhcCCCCCC--CCcEEEeecCCh-hhhh---hcCCCeE
Q 046970 267 ERLQQM--KVFIVLDDVNKPEQ-----------------LIFLVGGLDRFG--PRSRIIVTTRDK-QVFD---ECEVDSI 321 (420)
Q Consensus 267 ~~l~~~--~~LlVLDdv~~~~~-----------------l~~l~~~~~~~~--~g~~IIiTtR~~-~~~~---~~~~~~~ 321 (420)
+.+.++ =+.+.+|.|+.... +..++..+.... ++. +|+||.+- .-.. ....+-.
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv-liL~TSNl~~siD~AfVDRADi~ 321 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV-LILATSNLTDSIDVAFVDRADIV 321 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE-EEEeccchHHHHHHHhhhHhhhe
Confidence 555554 35677888854321 233333322221 333 44444432 1111 1123334
Q ss_pred EEeCCCCHHHHHHHHHhcc
Q 046970 322 YEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 322 ~~l~~L~~~ea~~L~~~~a 340 (420)
..+++-+.+...++++.+.
T Consensus 322 ~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred eecCCccHHHHHHHHHHHH
Confidence 5677777777777776553
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.62 E-value=0.00036 Score=75.36 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=39.6
Q ss_pred CCcccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 169 TGSVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++|.+..++.+...+... .....++.++|++|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 56899999999888877531 1124578899999999999999999876443
No 147
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.62 E-value=0.0022 Score=61.09 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=25.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+..++|||++|+|||.+|+.++......
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 47899999999999999999999987544
No 148
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=0.0002 Score=60.01 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKER 268 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~ 268 (420)
....+++|.|.+|.|||||++.++..... ..+.+++.......--+. ....+. .-.+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHH
Confidence 34679999999999999999999875432 345555542111110000 111111 3445666
Q ss_pred hcCCeEEEEEeCCC---CHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 269 LQQMKVFIVLDDVN---KPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 269 l~~~~~LlVLDdv~---~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
+..++-++++|+.. +......+...+... +..||++|.+....... .++++.+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 67788899999873 222222222222221 24688888877655432 3444444
No 149
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0006 Score=68.66 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=75.6
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHH-HH
Q 046970 189 LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYI-KE 267 (420)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l-~~ 267 (420)
.+..+-|.++|+||+|||++|+.+++...-+|-.+ .. .++++...++.. .....+ .+
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg--------pEL~sk~vGeSE-----r~ir~iF~k 522 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG--------PELFSKYVGESE-----RAIREVFRK 522 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC--------HHHHHHhcCchH-----HHHHHHHHH
Confidence 35678899999999999999999999866555211 00 012222221110 001112 22
Q ss_pred HhcCCeEEEEEeCCCCHH-------------HHHHHhcCCCCCCCCcEEEe---ecCChh----hhhhcCCCeEEEeCCC
Q 046970 268 RLQQMKVFIVLDDVNKPE-------------QLIFLVGGLDRFGPRSRIIV---TTRDKQ----VFDECEVDSIYEVEGL 327 (420)
Q Consensus 268 ~l~~~~~LlVLDdv~~~~-------------~l~~l~~~~~~~~~g~~IIi---TtR~~~----~~~~~~~~~~~~l~~L 327 (420)
.-+..++++.||.++... .+..|+..+........|+| |.|... ++..-..+..+.++.-
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 222357899999874331 24555555544333333333 344322 2332236678888888
Q ss_pred CHHHHHHHHHhcccC
Q 046970 328 NKDESLELFSNFAFR 342 (420)
Q Consensus 328 ~~~ea~~L~~~~a~~ 342 (420)
+.+.-.++|+.++-+
T Consensus 603 D~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 603 DLEARLEILKQCAKK 617 (693)
T ss_pred cHHHHHHHHHHHHhc
Confidence 888888999988844
No 150
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0066 Score=57.60 Aligned_cols=90 Identities=11% Similarity=0.186 Sum_probs=62.5
Q ss_pred CeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhhhhc-CCCeEEEeCCCCHHHHHHHHHhcccCCCCCc
Q 046970 272 MKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVFDEC-EVDSIYEVEGLNKDESLELFSNFAFRQKICP 347 (420)
Q Consensus 272 ~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 347 (420)
+.-++|+|+++.. .....|+..+..-.+++.+|++|.+. .+++.. .....+.+.+++.+++.+.+.... . +
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c
Confidence 4568899998654 45667777776666777777666654 444332 345788999999999999887642 1 1
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHH
Q 046970 348 KDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 348 ~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
....++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1246788999999876554
No 151
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0015 Score=62.77 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=83.3
Q ss_pred ccc-ccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc--ccceEEEEeccccccccCHHHHHHHHHH
Q 046970 171 SVG-VNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE--FEGECFITNVREESERVGLVHLRERVLS 247 (420)
Q Consensus 171 ~vG-R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~l~~~ll~ 247 (420)
++| -+..++.|...+..+ .-.....++|+.|+||||+|+.+++.+-.. .... ..+.-...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----------CCCcCHHHHHHhc
Confidence 344 333444455555422 225677899999999999999999875221 0000 0000001111100
Q ss_pred HHhhccc--cCCC----CCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hh
Q 046970 248 EILEENL--KIGT----LNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VF 313 (420)
Q Consensus 248 ~l~~~~~--~~~~----~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~ 313 (420)
.....-. .... .+....+.+.+ .+.+-++|+|+++.. +..+.|+..+....+++.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000000 0000 00111122222 245568999998644 345667777766567777777776543 33
Q ss_pred hh-cCCCeEEEeCCCCHHHHHHHHHhc
Q 046970 314 DE-CEVDSIYEVEGLNKDESLELFSNF 339 (420)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~ea~~L~~~~ 339 (420)
+. ......+++.+++.++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 234578899999999998888754
No 152
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0023 Score=61.29 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=58.8
Q ss_pred CeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCc
Q 046970 272 MKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICP 347 (420)
Q Consensus 272 ~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 347 (420)
+.-++|+|+++.. .....|+..+..-.+++.+|++|.+ ..+++. ......+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 4568889998644 4567777777766677776665555 444433 2345788999999999999997752 111
Q ss_pred hhHHHHHHHHHHHhcCChHHHH
Q 046970 348 KDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 348 ~~~~~~~~~i~~~~~G~PLal~ 369 (420)
...++..++|.|+...
T Consensus 208 ------~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 208 ------ADALLAEAGGAPLAAL 223 (342)
T ss_pred ------HHHHHHHcCCCHHHHH
Confidence 1235677899996443
No 153
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0042 Score=59.09 Aligned_cols=159 Identities=9% Similarity=0.101 Sum_probs=90.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccC---CCCCc-hHHHH-
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKI---GTLNL-PEYIK- 266 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~-~~~l~- 266 (420)
.....++|+.|+||+++|+.++..+--.-+.. ....+.-...+.+.......-..+ ..... .+.++
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~ 94 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVRE 94 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHH
Confidence 45778999999999999999998652211000 000111111111111100000000 00011 22333
Q ss_pred --HHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCCh-hhhhh-cCCCeEEEeCCCCHHHHHHH
Q 046970 267 --ERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDK-QVFDE-CEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 267 --~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L 335 (420)
+.+ .++.-++|+|+++.. .....|+..+..-.+++.+|++|.+. .+++. ......+.+.+++.+++.+.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~ 174 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDW 174 (325)
T ss_pred HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHH
Confidence 222 245668889998654 44667777777666777777777665 44433 23457889999999999998
Q ss_pred HHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 336 FSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
+..... ... ..+..++..++|.|+
T Consensus 175 L~~~~~---~~~----~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 175 LQAQSS---AEI----SEILTALRINYGRPL 198 (325)
T ss_pred HHHHhc---cCh----HHHHHHHHHcCCCHH
Confidence 887641 111 124567788999996
No 154
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00037 Score=63.20 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=71.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc-------------c---cceEEEEecccccc--ccCH--------------
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE-------------F---EGECFITNVREESE--RVGL-------------- 238 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------f---~~~~~v~~~~~~~~--~~~~-------------- 238 (420)
....++|+|++|.|||||.+.+..-++.. . ..+.|+..-..... +-.+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 44799999999999999999999743221 0 12333331110000 0011
Q ss_pred --------HHHHHHHHHHHhhccc---cCCCCC---c-hHHHHHHhcCCeEEEEEeCC------CCHHHHHHHhcCCCCC
Q 046970 239 --------VHLRERVLSEILEENL---KIGTLN---L-PEYIKERLQQMKVFIVLDDV------NKPEQLIFLVGGLDRF 297 (420)
Q Consensus 239 --------~~l~~~ll~~l~~~~~---~~~~~~---~-~~~l~~~l~~~~~LlVLDdv------~~~~~l~~l~~~~~~~ 297 (420)
.....+.+..+..... .+..+. . ...+.+.|..++=||+||.- .....+-.++..+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 1222233333322211 222222 2 66788889999999999964 233445566666553
Q ss_pred CCCcEEEeecCChhhhhh
Q 046970 298 GPRSRIIVTTRDKQVFDE 315 (420)
Q Consensus 298 ~~g~~IIiTtR~~~~~~~ 315 (420)
.|+-||++|.|......
T Consensus 188 -eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 -EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCCEEEEEeCCcHHhHh
Confidence 48889999998766544
No 155
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00023 Score=71.11 Aligned_cols=187 Identities=17% Similarity=0.160 Sum_probs=108.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...++||-+.-...|...+..+. -.......|+-|+||||+|+.++..+--. .. ....+.+--...+.+.
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~--~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCE--NG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCC--CC-------CCCCcchhhhhhHhhh
Confidence 44668999988888888876442 24456789999999999999999864111 00 0111122222222222
Q ss_pred HHHhhccccCC-----CCCchHHHHHHhc-----CCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhh-h
Q 046970 247 SEILEENLKIG-----TLNLPEYIKERLQ-----QMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQV-F 313 (420)
Q Consensus 247 ~~l~~~~~~~~-----~~~~~~~l~~~l~-----~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~-~ 313 (420)
..-...-..++ ..+....+.+... ++.-+.|+|.|+.. ..+..|+..+.........|..|.+.+- .
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11000000111 1112333333332 34568999999654 5588888888766666666666665433 2
Q ss_pred h-hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh
Q 046970 314 D-ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 314 ~-~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 365 (420)
. .......|.++.++.++....+...+-...-.. .++...-|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 2 223457899999999999988887774333221 1234555666666643
No 156
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0011 Score=67.25 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=82.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccc-cceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEF-EGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 270 (420)
..-|.|.|+.|+|||+||+++++.+...- -.+.+++ +.. .....+.++++.+ .....+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~-l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CST-LDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chh-ccchhHHHHHHHH----------------HHHHHHHHh
Confidence 46788999999999999999999876432 2223332 111 1122233443333 122344556
Q ss_pred CCeEEEEEeCCCCHH---------------HHHHHh----cCCCCCCCCcEEEeecCChhhh-----hhcCCCeEEEeCC
Q 046970 271 QMKVFIVLDDVNKPE---------------QLIFLV----GGLDRFGPRSRIIVTTRDKQVF-----DECEVDSIYEVEG 326 (420)
Q Consensus 271 ~~~~LlVLDdv~~~~---------------~l~~l~----~~~~~~~~g~~IIiTtR~~~~~-----~~~~~~~~~~l~~ 326 (420)
..+-++||||++... -+..++ ..+...+....+|.|.....-+ ...-......|+.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 789999999984321 011111 1111112222345555433221 1122345678999
Q ss_pred CCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC-hHHHHH
Q 046970 327 LNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN-PLALKV 370 (420)
Q Consensus 327 L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~ 370 (420)
+..++-.++++... ........ .+...-+..+|+|. |.-+++
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~~~-~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSDIT-MDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred cchhHHHHHHHHHH-Hhhhhhhh-hHHHHHHHHhcCCccchhHHH
Confidence 99888887776544 22221111 12223366667664 444443
No 157
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.53 E-value=0.00012 Score=63.56 Aligned_cols=36 Identities=33% Similarity=0.269 Sum_probs=26.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..-+.|+|.+|+|||.||..+++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 346889999999999999999987655444566665
No 158
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.49 E-value=0.00044 Score=61.80 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=35.8
Q ss_pred ccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 184 LLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 184 ~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+|..+-+...++.|+|++|+|||+|+.+++.....+-..++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45545556789999999999999999999987755556788887
No 159
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0021 Score=63.17 Aligned_cols=127 Identities=24% Similarity=0.250 Sum_probs=74.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHH-
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKER- 268 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~- 268 (420)
.....+.+.|++|.|||+||..++.. ..|+.+-.+. +.++..+ ........+++.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-------pe~miG~---------------sEsaKc~~i~k~F 591 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-------PEDMIGL---------------SESAKCAHIKKIF 591 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-------hHHccCc---------------cHHHHHHHHHHHH
Confidence 45678889999999999999998764 4566443332 1100000 000002223332
Q ss_pred ---hcCCeEEEEEeCCCCHHH------------HHHHhcCCCCC-CCCcE--EEeecCChhhhhhcC----CCeEEEeCC
Q 046970 269 ---LQQMKVFIVLDDVNKPEQ------------LIFLVGGLDRF-GPRSR--IIVTTRDKQVFDECE----VDSIYEVEG 326 (420)
Q Consensus 269 ---l~~~~~LlVLDdv~~~~~------------l~~l~~~~~~~-~~g~~--IIiTtR~~~~~~~~~----~~~~~~l~~ 326 (420)
-+..--.||+||++..-+ ++.|+-.+... .+|-| |+-||....++..++ ....++++.
T Consensus 592 ~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred HHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 334557899999865433 23333222222 23444 555777777887776 456789999
Q ss_pred CCH-HHHHHHHHhcc
Q 046970 327 LNK-DESLELFSNFA 340 (420)
Q Consensus 327 L~~-~ea~~L~~~~a 340 (420)
++. ++..+.++..-
T Consensus 672 l~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 672 LTTGEQLLEVLEELN 686 (744)
T ss_pred cCchHHHHHHHHHcc
Confidence 988 67777776543
No 160
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.47 E-value=0.00033 Score=61.79 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=39.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...++||-++.++.+.-....+ ..+-+.|.||||+||||-+..+++.+-+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 4457899998888876655533 5677889999999999999999987643
No 161
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.47 E-value=0.00014 Score=61.30 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=55.3
Q ss_pred cEEecCcccccc-CcchHHHHHHHhhC-CCceeeeC-CCCC--CCcchHHHHHHhhhcceeEEEecccc
Q 046970 13 DVFLSFRGEDTR-DNFTSHLFAALRQK-RIKIFIDE-EANR--GDEISLALLNAIEGSKISIVIFSKNY 76 (420)
Q Consensus 13 dvfis~~~~d~~-~~~~~~L~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~ai~~s~~~i~v~S~~y 76 (420)
-|||||+.+... ...|..|++.|++. |+.|.+|. +... +..+..++.+.++++..+|+|.||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 489999985543 46799999999999 99999998 7744 77899999999999999999999754
No 162
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00048 Score=63.39 Aligned_cols=37 Identities=32% Similarity=0.245 Sum_probs=29.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...-+.++|.+|+|||.||.++++.+...-..+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4557889999999999999999999874434555554
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.45 E-value=0.00039 Score=66.34 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=28.9
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+.++|.+|+|||+||..+++.+..+-..+.|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999998765544566665
No 164
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.44 E-value=0.00058 Score=59.51 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=68.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHH------HHHHHHHHHhhccc---cCCCCC-
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVH------LRERVLSEILEENL---KIGTLN- 260 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~------l~~~ll~~l~~~~~---~~~~~~- 260 (420)
...+++|.|.+|.|||||++.++..... ..+.+++.... ... ..... ...+++..+.-... ......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4679999999999999999999876433 34555554211 110 01111 11112333221111 111222
Q ss_pred --c-hHHHHHHhcCCeEEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 261 --L-PEYIKERLQQMKVFIVLDDVN---KPEQ---LIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 261 --~-~~~l~~~l~~~~~LlVLDdv~---~~~~---l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
. .-.+.+.+...+-+++||+.. +... +..++..+.. ..+..||++|.+....... .+.++.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 1 455666777889999999873 2222 3333322211 1156788899887654332 3344444
No 165
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.44 E-value=0.00042 Score=62.69 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=37.1
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|.++|..+-....++.|+|.+|+|||+||.+++......-..++|++
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44455545556789999999999999999999987765556778887
No 166
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.44 E-value=0.0009 Score=56.70 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=26.9
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
++.|+|.+|+||||++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999988765444555655
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0023 Score=68.51 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=38.6
Q ss_pred CCcccccccceeeecccc----cCCCCceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 169 TGSVGVNSRIRHIKSLLH----LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
...+|.+...+.+.+++. ......+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 346788877777776553 1222346899999999999999999999875443
No 168
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.001 Score=67.73 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=42.1
Q ss_pred CCcccccccceeeeccccc----CCCCceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 169 TGSVGVNSRIRHIKSLLHL----GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
.+-+|.+.-.++|.+.|.. ..-..++++++|+||+|||+|++.++.-+...|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 4557888888888887742 223468999999999999999999999887766
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=97.42 E-value=0.0024 Score=67.80 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=90.1
Q ss_pred Eec--cCcchHHHHHHHHHHHhhc-cccc-eEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCC
Q 046970 197 IWG--MGGIGKTTFAGAIFNQISS-EFEG-ECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQM 272 (420)
Q Consensus 197 I~G--~gGiGKTtLa~~~~~~~~~-~f~~-~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~ 272 (420)
+.| |.++||||+|..+++.+-. .+.. ..-+. .+...+...+ ++++........ . -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~I-R~iIk~~a~~~~-~------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVI-REKVKEFARTKP-I------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHH-HHHHHHHHhcCC-c------------CCCC
Confidence 347 7899999999999998633 2322 33333 2222233322 223222211100 0 0124
Q ss_pred eEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCch
Q 046970 273 KVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPK 348 (420)
Q Consensus 273 ~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~ 348 (420)
.-++|+|+++.. .....|+..+......+++|++|.+.. +... ......+.+++++.++..+.+.+.+-.....-+
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~ 710 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 710 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 579999999765 355666666665556777777666543 3222 234578999999999999888776533221111
Q ss_pred hHHHHHHHHHHHhcCChHHH
Q 046970 349 DFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 349 ~~~~~~~~i~~~~~G~PLal 368 (420)
++....|++.++|.+...
T Consensus 711 --~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 246788999999988544
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.41 E-value=9.3e-05 Score=72.49 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc--cccceEEEEeccccccccCHHHHHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS--EFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+..+.|+. .....+..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhccc-
Confidence 4466677777777777653 346889999999999999999988743 345555655 33333333332211
Q ss_pred HHHhhccccCCCC-Cc-hHHHHHHhc--CCeEEEEEeCCCCH
Q 046970 247 SEILEENLKIGTL-NL-PEYIKERLQ--QMKVFIVLDDVNKP 284 (420)
Q Consensus 247 ~~l~~~~~~~~~~-~~-~~~l~~~l~--~~~~LlVLDdv~~~ 284 (420)
........-. .. .+.+.+... +++++||+|+++..
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 1111111000 11 222333222 36899999998543
No 171
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.40 E-value=0.00067 Score=58.28 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=65.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccc---cccccCH--HHHHHHHHHHHhhccccCCCCCc-hHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVRE---ESERVGL--VHLRERVLSEILEENLKIGTLNL-PEY 264 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~--~~l~~~ll~~l~~~~~~~~~~~~-~~~ 264 (420)
...+++|.|.+|.|||||++.++...... .+.+++...+. ..+...+ ..+.+.+... ........+. .-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 46799999999999999999998764322 33333321110 1111111 1222222110 1111111122 455
Q ss_pred HHHHhcCCeEEEEEeCCC---CHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 265 IKERLQQMKVFIVLDDVN---KPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 265 l~~~l~~~~~LlVLDdv~---~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
+.+.+..++-+++||+-. +....+.+...+... +..+|++|++..... ..++++.+.
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 666777788899999762 222222222222222 356888888876543 245555543
No 172
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.40 E-value=0.0013 Score=57.23 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=66.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHh--hcccc----------CCC
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEIL--EENLK----------IGT 258 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~----------~~~ 258 (420)
...+++|.|.+|.|||||++.++..... ..+.+++.... +......+-..+. .+... ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVP-------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEE-------HHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 4578999999999999999999875432 23445544210 0000000000000 00000 111
Q ss_pred C---Cc-hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 259 L---NL-PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 259 ~---~~-~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
. +. .-.+.+.+-.++-+++||+..+ . +.+..++..+ ..+..||++|++...... .++++.+.
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 1 11 4455666778889999998732 2 2233333333 235678899988876643 45555543
No 173
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.00046 Score=59.83 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=64.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecc--ccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVR--EESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKE 267 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~ 267 (420)
...+++|.|++|.|||||++.++..... ..+.+.+.... -..+... ....+. .-.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 4569999999999999999998875433 23444443210 0000000 111111 445566
Q ss_pred HhcCCeEEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeCCC
Q 046970 268 RLQQMKVFIVLDDVN---KPEQ---LIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVEGL 327 (420)
Q Consensus 268 ~l~~~~~LlVLDdv~---~~~~---l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~~L 327 (420)
.+..++-+++||+.. +... +..++..+.. ..+..||++|.+....... .+.++.+..-
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~~~ 148 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFEGE 148 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEcCC
Confidence 677788899999863 2222 2223322211 1235688888887665533 3455555533
No 174
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00096 Score=66.62 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=40.4
Q ss_pred CCCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 168 FTGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++=|.+..+.+|.+++.. +-...+-|.+||++|+|||.||++++..+.--
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 45677899988888776532 22346889999999999999999999986443
No 175
>PRK07261 topology modulation protein; Provisional
Probab=97.37 E-value=0.00074 Score=58.31 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|+|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00076 Score=64.51 Aligned_cols=143 Identities=16% Similarity=0.103 Sum_probs=76.8
Q ss_pred cccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc---------------------cceEEEEec
Q 046970 171 SVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF---------------------EGECFITNV 229 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~~~v~~~ 229 (420)
++|-+....++..+..........+.++|++|+||||+|..+++.+.... +....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-- 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec--
Confidence 34445555555555543322344699999999999999999999875332 1222222
Q ss_pred cccccccC---HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEE
Q 046970 230 REESERVG---LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRII 304 (420)
Q Consensus 230 ~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~II 304 (420)
.+.... ..+..+++........ ..++.-++++|+++... ....++..+......+.+|
T Consensus 81 --~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 --PSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred --ccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 111111 1111111111110000 02457899999997653 3555666666566788888
Q ss_pred eecCChh-hhhh-cCCCeEEEeCCCCHHHH
Q 046970 305 VTTRDKQ-VFDE-CEVDSIYEVEGLNKDES 332 (420)
Q Consensus 305 iTtR~~~-~~~~-~~~~~~~~l~~L~~~ea 332 (420)
++|.+.. +... ......+++.+.+..+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHH
Confidence 8887443 3322 22345667776444333
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0019 Score=64.64 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=78.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQ 270 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~ 270 (420)
..-|.+||++|+|||-||+++++.-.-+| +. +. +. +++..-.++.. .. .....+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is----VK---GP-----ELlNkYVGESE-----rAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS----VK---GP-----ELLNKYVGESE-----RAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee----ec---CH-----HHHHHHhhhHH-----HHHHHHHHHhhc
Confidence 56788999999999999999999876665 22 10 00 23333333211 01 222333334
Q ss_pred CCeEEEEEeCCCCH-------------HHHHHHhcCCCCC--CCCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHH
Q 046970 271 QMKVFIVLDDVNKP-------------EQLIFLVGGLDRF--GPRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKD 330 (420)
Q Consensus 271 ~~~~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ 330 (420)
..+|+|.+|.++.. ..+..|+..+... ..|.-||-.|.-+++ +..-..+..+-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 57999999998532 2245566555432 235556655543333 333345678889988999
Q ss_pred HHHHHHHhccc
Q 046970 331 ESLELFSNFAF 341 (420)
Q Consensus 331 ea~~L~~~~a~ 341 (420)
|-.++++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999988773
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.001 Score=69.38 Aligned_cols=117 Identities=15% Similarity=0.224 Sum_probs=74.7
Q ss_pred CCcccccccceeeecccc-------cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLH-------LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHL 241 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l 241 (420)
..++|-+..+..+.+.+. ..+.+.......|+.|+|||.||+.++..+-+.=+.-+-+ ++.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~----------DMSEy 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI----------DMSEY 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee----------chHHH
Confidence 567888888888766553 2233456788899999999999999999874322222222 22222
Q ss_pred -HHHHHHHHhhccccCCCCCchHHHHHHhcCCeE-EEEEeCCC--CHHHHHHHhcCCC
Q 046970 242 -RERVLSEILEENLKIGTLNLPEYIKERLQQMKV-FIVLDDVN--KPEQLIFLVGGLD 295 (420)
Q Consensus 242 -~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVLDdv~--~~~~l~~l~~~~~ 295 (420)
-+.-.+.+.+.++..-.-+.-..|-+..+++|+ ++.||+++ +++.++-|+..+.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 234456666665533333334456677778876 99999995 4455666665543
No 179
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.35 E-value=0.0006 Score=61.38 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=36.6
Q ss_pred eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 180 HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.|..+|..+-....++.|+|.+|+||||||.+++.....+-..++|++
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344455545556789999999999999999999987755545667775
No 180
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.35 E-value=0.00053 Score=73.74 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=37.9
Q ss_pred CCcccccccceeeeccccc-------CCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 169 TGSVGVNSRIRHIKSLLHL-------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
..++|-+..++.+.+.+.. ......++.++|++|+|||.||+.++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4678888888888776531 1223457899999999999999999987643
No 181
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.35 E-value=0.00044 Score=63.02 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=35.1
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|..+|..+-+...++.|+|.+|+|||+|+.+++.....+-..++|+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 44455555566789999999999999999999765433445667776
No 182
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.001 Score=57.48 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=66.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc---------c-CCCCC
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL---------K-IGTLN 260 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~---------~-~~~~~ 260 (420)
...+++|.|++|.|||||.+.++..... ..+.+++.... ... .........+ . ...+.. . ....+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~~~~~~~~i-~-~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LDLESLRKNI-A-YVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cCHHHHHhhE-E-EEcCCchhccchHHHHhhCHHH
Confidence 4579999999999999999999886533 34555554211 000 0000000000 0 000000 0 00011
Q ss_pred c-hHHHHHHhcCCeEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 261 L-PEYIKERLQQMKVFIVLDDVNK------PEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 261 ~-~~~l~~~l~~~~~LlVLDdv~~------~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
. .-.+.+.+..++-+++||+... ...+..++..+. .+..||++|.+...... .++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 3445666777889999998632 223334443332 34678899998876653 4555554
No 183
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.34 E-value=0.00021 Score=64.47 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=29.7
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.++|.|.+|.|||||+..+.......|..+..+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5779999999999999999999999997766664
No 184
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.34 E-value=0.0011 Score=62.67 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=28.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.+-+.|+|..|+|||.||..+++.+..+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999999998765544455665
No 185
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.34 E-value=0.00086 Score=60.67 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=35.3
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc------cceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF------EGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~v~ 227 (420)
|..+|..+-....++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3444544555678999999999999999999987654444 5667776
No 186
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.33 E-value=0.00017 Score=58.26 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.33 E-value=0.0059 Score=59.28 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCH--------HHHHHHhcCCCCCCCCcEEEeecCChhhhhh----c--CCCeEEEeCCCCHHHHHHHHHh
Q 046970 273 KVFIVLDDVNKP--------EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE----C--EVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 273 ~~LlVLDdv~~~--------~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~----~--~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
+-++|+||+... +.+.++...+-. .+-.+||.+|-+...... + ...+.+.|.-.+.+-|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 568999998321 122233322221 345678888877544322 1 2446789999999999999988
Q ss_pred cccCCCCC-------------c-----hhHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 046970 339 FAFRQKIC-------------P-----KDFLVLSKRVVDYANGNPLALKVLGSFFYRKS 379 (420)
Q Consensus 339 ~a~~~~~~-------------~-----~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~ 379 (420)
+....... + ..........++.+||--.=|..+++.++...
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe 286 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE 286 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 87432110 0 12345567889999999999999999998743
No 188
>PRK04296 thymidine kinase; Provisional
Probab=97.33 E-value=0.00035 Score=61.47 Aligned_cols=110 Identities=19% Similarity=0.096 Sum_probs=59.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhcccc--CCCCCc-hHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLK--IGTLNL-PEYIKERL 269 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~-~~~l~~~l 269 (420)
.++.|+|++|.||||++..++.+...+...++.+. . ......+.. .+.+.+...... ...... ...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 57889999999999999999998766544444442 1 001111111 122222111000 111111 222222 2
Q ss_pred cCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 270 QQMKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 270 ~~~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23556999999843 344555544432 46788999998743
No 189
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.33 E-value=0.0006 Score=62.14 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=35.7
Q ss_pred hHHHHHHhcCCeEEEEEeCCC------CHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 262 PEYIKERLQQMKVFIVLDDVN------KPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~------~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
...+.+.|.+++-+|+||.-. +.-.+-+++..+.. ..|.-||+++.|.+.+...
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHh
Confidence 667788889999999999652 22223333333321 2467799999999877665
No 190
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0012 Score=60.07 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=99.8
Q ss_pred CCCCcccccccceeeeccccc---CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL---GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....|||-+.-.++|.-.+.. ..+..--+.++|+||.||||||.-+++.+..++.. ....-.....++..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----tsGp~leK~gDlaa--- 96 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----TSGPALEKPGDLAA--- 96 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----cccccccChhhHHH---
Confidence 446799998877777655532 22346689999999999999999999987554321 10000001111111
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHHH-HHHH-hcCCC--------CCCCC-----------cE
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPEQ-LIFL-VGGLD--------RFGPR-----------SR 302 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~~-l~~l-~~~~~--------~~~~g-----------~~ 302 (420)
+...|.. .=+|.+|.++.... .+++ .+... .-+++ +-
T Consensus 97 ---------------------iLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 ---------------------ILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ---------------------HHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 1111122 22455566643211 1111 11110 01222 33
Q ss_pred EEeecCChhhhhhc--CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 046970 303 IIVTTRDKQVFDEC--EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFY 376 (420)
Q Consensus 303 IIiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~ 376 (420)
|=.|||--.+.... ...-+.+++-.+.+|-.++..+.+..-...- .++.+.+|+++..|-|.-..-+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i--~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI--DEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC--ChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 44688865443322 2445678999999999999998873322111 135588999999999976554444443
No 191
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.31 E-value=0.00041 Score=59.41 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=65.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERL 269 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l 269 (420)
...+++|.|.+|.|||||.+.++..... ..+.+++.... ... ........ ..+ .-.......+. .-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~~~-~~~~~~~~---~~i-~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-VSF-ASPRDARR---AGI-AMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-CCc-CCHHHHHh---cCe-EEEEecCHHHHHHHHHHHHH
Confidence 4579999999999999999999875432 34555554211 110 01111000 000 00001111112 44566667
Q ss_pred cCCeEEEEEeCCC---CHH---HHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 270 QQMKVFIVLDDVN---KPE---QLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 270 ~~~~~LlVLDdv~---~~~---~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
-.++-++++|+.. +.. .+..++..+. ..+..||++|++....... .+.++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 7788899999873 222 2333332222 2366788999887654432 3344444
No 192
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.31 E-value=0.00072 Score=72.84 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCcccccccceeeeccccc-------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHL-------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHL 241 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l 241 (420)
..++|-+..++.+...+.. .......+.++|++|+|||+||+.+++.+...-...+-++ ..+.......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~--- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTV--- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccH---
Confidence 5688988888888776642 1112346779999999999999999987643322222222 2221111111
Q ss_pred HHHHHHHHhhccccCCCCCchHHHHHHhcCCe-EEEEEeCCCCH--HHHHHHhcCCCCC-----------CCCcEEEeec
Q 046970 242 RERVLSEILEENLKIGTLNLPEYIKERLQQMK-VFIVLDDVNKP--EQLIFLVGGLDRF-----------GPRSRIIVTT 307 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVLDdv~~~--~~l~~l~~~~~~~-----------~~g~~IIiTt 307 (420)
..+.+.....-..+....+.+.++.++ .+++||+++.. +..+.|+..+... ..++-+|+||
T Consensus 585 -----~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 -----SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred -----HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 112222221111122334556666555 69999999643 4445555444321 1345577776
Q ss_pred CC
Q 046970 308 RD 309 (420)
Q Consensus 308 R~ 309 (420)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 63
No 193
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.31 E-value=0.0011 Score=59.27 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=41.3
Q ss_pred hHHHHHHhcCCeEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 262 PEYIKERLQQMKVFIVLDDV------NKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv------~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
.-.+.+.|...|-+|+.|+- .+...+-.++..+.. ..|..||+.|.|+.++.. .+..+.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 66788889999999999965 223344444444321 247789999999998876 34555554
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0051 Score=58.71 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=41.5
Q ss_pred eEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCeEEEeCCCCHHHHHHHHHhc
Q 046970 273 KVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDSIYEVEGLNKDESLELFSNF 339 (420)
Q Consensus 273 ~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 339 (420)
+-++|+|+++.. .....++..+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 345566877543 334444444443345676777887754 3322 123467899999999999888664
No 195
>PRK08118 topology modulation protein; Reviewed
Probab=97.29 E-value=0.00025 Score=60.96 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=26.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc---cccceEEE
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS---EFEGECFI 226 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~---~f~~~~~v 226 (420)
.|.|+|++|+||||||+.+++.+.- +++..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5789999999999999999997633 35555553
No 196
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00067 Score=61.66 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=72.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecc--ccccccCHHHHHHHHHHHHhhccc-------cCCCCCc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVR--EESERVGLVHLRERVLSEILEENL-------KIGTLNL 261 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~~l~~~ll~~l~~~~~-------~~~~~~~ 261 (420)
+..+++|+|.+|+|||||++.+..-.... .+.+++.+-. ... .....+...+++........ .....+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46799999999999999999998865543 2334433111 011 11223334444444432221 2223333
Q ss_pred -hHHHHHHhcCCeEEEEEeCCCCH------HHHHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 262 -PEYIKERLQQMKVFIVLDDVNKP------EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 262 -~~~l~~~l~~~~~LlVLDdv~~~------~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
.-.+.+.|.-++-++|.|...+. .++-.++..+.. ..|...|..|.|-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 66778888999999999976322 334444444332 2355677778887776654
No 197
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.27 E-value=0.002 Score=68.63 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=53.9
Q ss_pred CchhhHHHHHHHHHHHhhhcccccc----------cCCCCcccccccceeeeccccc----CCCCceEEEEeccCcchHH
Q 046970 141 MRPEARLVDEIVKDIMKKLKDKLLS----------RDFTGSVGVNSRIRHIKSLLHL----GLPDFRIVGIWGMGGIGKT 206 (420)
Q Consensus 141 ~~~e~~~i~~i~~~v~~~l~~~~~~----------~~~~~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKT 206 (420)
.+.|+..+....+.+....+..... .-..+.+|.+...+.|.++|.. +.....+++++|++|+|||
T Consensus 284 ~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKT 363 (784)
T PRK10787 284 MSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKT 363 (784)
T ss_pred CCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHH
Confidence 3346777777776665544333221 0123578888888888877752 2234568999999999999
Q ss_pred HHHHHHHHHhhccc
Q 046970 207 TFAGAIFNQISSEF 220 (420)
Q Consensus 207 tLa~~~~~~~~~~f 220 (420)
|+++.++..+...|
T Consensus 364 tl~~~ia~~l~~~~ 377 (784)
T PRK10787 364 SLGQSIAKATGRKY 377 (784)
T ss_pred HHHHHHHHHhCCCE
Confidence 99999998765443
No 198
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.27 E-value=0.0012 Score=59.36 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCccccccccee---eeccccc----CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHH
Q 046970 169 TGSVGVNSRIRH---IKSLLHL----GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHL 241 (420)
Q Consensus 169 ~~~vGR~~~l~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l 241 (420)
++.||-+....+ |.+.|.. +...++-|..+|++|.|||.+|+++++....-| +. +.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~----vk-------- 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL----VK-------- 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE----ec--------
Confidence 456665543332 2333432 223478899999999999999999998753322 21 00
Q ss_pred HHHHHHHHhhccccCCCCCchHHHH-HHhcCCeEEEEEeCCCCH--------------HHHHHHhcCCCCC--CCCcEEE
Q 046970 242 RERVLSEILEENLKIGTLNLPEYIK-ERLQQMKVFIVLDDVNKP--------------EQLIFLVGGLDRF--GPRSRII 304 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~g~~II 304 (420)
..+++..-.+.. ......+- +.-+.-+|++.+|.++.. +.+.+|+..+... +.|...|
T Consensus 184 at~liGehVGdg-----ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 184 ATELIGEHVGDG-----ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred hHHHHHHHhhhH-----HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 011221111110 00122222 222346899999987433 2245565554422 4566677
Q ss_pred eecCChhhhhhc---CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC
Q 046970 305 VTTRDKQVFDEC---EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 305 iTtR~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 364 (420)
..|.++.++... ...+-++...-+++|-.+++..++-.-..+.. .-.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 777776665432 24456777778899999999988833222221 1245677777776
No 199
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.27 E-value=0.0028 Score=53.63 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=59.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhh----ccccC--CCCCc-----
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILE----ENLKI--GTLNL----- 261 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~----~~~~~--~~~~~----- 261 (420)
..|-|++.+|.||||+|...+-+...+-..+.++--+... ...+-..+++.+ ..+.- ..... .+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 3677888889999999999998865554444443322211 112222333322 00000 00000 11111
Q ss_pred ---hHHHHHHhcC-CeEEEEEeCCCC--------HHHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 262 ---PEYIKERLQQ-MKVFIVLDDVNK--------PEQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 262 ---~~~l~~~l~~-~~~LlVLDdv~~--------~~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
.+..++.+.. +-=|||||++.. .+.+..++... .++..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCCCC
Confidence 2223333444 345999998832 33444454443 46778999999864
No 200
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.26 E-value=0.0014 Score=60.41 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=57.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc----cCCCCCc-----
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL----KIGTLNL----- 261 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~~----- 261 (420)
..+.++|.|.+|.|||||+..+++..+.+|+..+++..+++.. ..+.++.+.+...-..... ...+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~--~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT--REGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc--HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578899999999999999999999988888778777665432 2344455544332111100 1111100
Q ss_pred ----hHHHHHHh--c-CCeEEEEEeCCCCH
Q 046970 262 ----PEYIKERL--Q-QMKVFIVLDDVNKP 284 (420)
Q Consensus 262 ----~~~l~~~l--~-~~~~LlVLDdv~~~ 284 (420)
.-.+.+++ + ++++|+++||+...
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12344455 3 78999999998543
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.25 E-value=0.0017 Score=57.35 Aligned_cols=115 Identities=24% Similarity=0.320 Sum_probs=53.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh--hccccceEEEEeccccccccC--HHHHHHHH---HHHHhhccccCCCCCchHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI--SSEFEGECFITNVREESERVG--LVHLRERV---LSEILEENLKIGTLNLPEY 264 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~--~~~f~~~~~v~~~~~~~~~~~--~~~l~~~l---l~~l~~~~~~~~~~~~~~~ 264 (420)
..++.+.|++|.|||.||.+.+-+. ..+|+..++....-+....-+ ..++.+.+ +..+...-...-.....+.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~ 98 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEE 98 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHH
Confidence 4589999999999999999998643 466777777764432211111 11111111 1111000000001111222
Q ss_pred HHH----------HhcCC---eEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEeecCC
Q 046970 265 IKE----------RLQQM---KVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIVTTRD 309 (420)
Q Consensus 265 l~~----------~l~~~---~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIiTtR~ 309 (420)
+.+ .++++ ..++|+|++.+ ..++..++.. .+.+|++|++--.
T Consensus 99 ~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 99 LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 221 23443 57999999944 4577777655 4789999998753
No 202
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.25 E-value=0.0027 Score=66.51 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=72.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcC
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQ 271 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~ 271 (420)
+-+.|+|++|+|||++|+.++......| +.+. . ..+.... .+. .... ...+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~---------~~~~~~~----~g~-----~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-G---------SDFVEMF----VGV-----GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-h---------HHhHHhh----hcc-----cHHHHHHHHHHHHhc
Confidence 3488999999999999999988764433 1111 0 0011000 000 0001 2222333345
Q ss_pred CeEEEEEeCCCCHH----------------HHHHHhcCCCCCC--CCcEEEeecCChhhhhh-----cCCCeEEEeCCCC
Q 046970 272 MKVFIVLDDVNKPE----------------QLIFLVGGLDRFG--PRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLN 328 (420)
Q Consensus 272 ~~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~ 328 (420)
.+++|++|+++... .+..++..+..+. .+.-+|.||..+..+.. -..+..+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 68999999985431 2334443333222 34445557766544322 1346778899889
Q ss_pred HHHHHHHHHhcccC
Q 046970 329 KDESLELFSNFAFR 342 (420)
Q Consensus 329 ~~ea~~L~~~~a~~ 342 (420)
.++-.+++..+...
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877643
No 203
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0055 Score=59.49 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=81.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc-
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ- 270 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~- 270 (420)
.|--.++|+||.|||++..++++.+ .|+ ++.-.+.++... ..|++.|.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L--~yd--IydLeLt~v~~n---------------------------~dLr~LL~~ 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL--NYD--IYDLELTEVKLD---------------------------SDLRHLLLA 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc--CCc--eEEeeeccccCc---------------------------HHHHHHHHh
Confidence 4567899999999999999999875 222 222212111111 11333332
Q ss_pred -CCeEEEEEeCCCCHHH--------------------HHHHhcCCC---CCCCCcEEE-eecCChhhh-----hhcCCCe
Q 046970 271 -QMKVFIVLDDVNKPEQ--------------------LIFLVGGLD---RFGPRSRII-VTTRDKQVF-----DECEVDS 320 (420)
Q Consensus 271 -~~~~LlVLDdv~~~~~--------------------l~~l~~~~~---~~~~g~~II-iTtR~~~~~-----~~~~~~~ 320 (420)
..+-+||+.|++..-+ +.-|+..+. ....+-||| .||...+-+ ..-..+-
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 2455666666632210 111222222 111234655 577654432 2223556
Q ss_pred EEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHH-hcCC
Q 046970 321 IYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSF-FYRK 378 (420)
Q Consensus 321 ~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~-L~~~ 378 (420)
.+.+.--+.+.-..|+..+...+. +. .++.+|.+...|.-+.=..++.. +..+
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 778999999999999999885433 22 33455555555655544444444 4444
No 204
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.24 E-value=0.0019 Score=55.14 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=62.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc--------------------ccceEEEEeccccccccCHHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE--------------------FEGECFITNVREESERVGLVHLRERVLSEILE 251 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~ 251 (420)
...+.++|+.|+||+++|..+++.+-.. ++...|+.... ....-.+..
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-~~~~i~i~~----------- 86 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-KKKSIKIDQ----------- 86 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT-SSSSBSHHH-----------
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc-ccchhhHHH-----------
Confidence 5578899999999999999999875221 22223332000 000011111
Q ss_pred ccccCCCCCchHHHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhh-hhh-cCCCeEE
Q 046970 252 ENLKIGTLNLPEYIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQV-FDE-CEVDSIY 322 (420)
Q Consensus 252 ~~~~~~~~~~~~~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~-~~~-~~~~~~~ 322 (420)
...+.+.+ .++.-++|+||++.. +....|+..+.....++.+|++|++..- ++. ......+
T Consensus 87 ----------ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i 156 (162)
T PF13177_consen 87 ----------IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVI 156 (162)
T ss_dssp ----------HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEE
T ss_pred ----------HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEE
Confidence 12222222 235678999999653 4456666666666688888888887653 222 2344667
Q ss_pred EeCCCC
Q 046970 323 EVEGLN 328 (420)
Q Consensus 323 ~l~~L~ 328 (420)
.+++|+
T Consensus 157 ~~~~ls 162 (162)
T PF13177_consen 157 RFRPLS 162 (162)
T ss_dssp EE----
T ss_pred ecCCCC
Confidence 777664
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0014 Score=62.99 Aligned_cols=90 Identities=20% Similarity=0.168 Sum_probs=53.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc-cceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCC------chH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLN------LPE 263 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~------~~~ 263 (420)
..+.++|+|.+|+|||||++.+++.+..+. +..+++.-+.+ ....+.++.+.+...+.....+..... ...
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~ 209 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVL 209 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHH
Confidence 346779999999999999999999876654 33333332322 234566777777664443221111111 111
Q ss_pred HHHHHh--cCCeEEEEEeCCC
Q 046970 264 YIKERL--QQMKVFIVLDDVN 282 (420)
Q Consensus 264 ~l~~~l--~~~~~LlVLDdv~ 282 (420)
.+.+++ .+++++||+|++.
T Consensus 210 ~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 210 ERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHcCCCEEEEEeCcH
Confidence 122222 4689999999984
No 206
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.19 E-value=0.00095 Score=64.81 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=36.9
Q ss_pred eeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 179 RHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 179 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.+|.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444555544455789999999999999999999987766545566765
No 207
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.19 E-value=0.00058 Score=58.70 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=44.1
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcC--C
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQ--M 272 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~--~ 272 (420)
+.|.|.+|.|||++|.+++.. .....+++. .....+. ++.+.+..............+....+.+.+.+ +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999999865 223555664 2222222 34444433322222223333334445555532 2
Q ss_pred eEEEEEeCC
Q 046970 273 KVFIVLDDV 281 (420)
Q Consensus 273 ~~LlVLDdv 281 (420)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999976
No 208
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.19 E-value=0.002 Score=68.11 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=37.9
Q ss_pred CCcccccccceeeeccccc-------CCCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 169 TGSVGVNSRIRHIKSLLHL-------GLPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..++|-+..++.|...+.. .......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578988888888776652 112245788999999999999999998773
No 209
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.0018 Score=56.08 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEec-cccccc-c-CHHHHHHHHHHHHhhcc--c--cCCCCCc-
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNV-REESER-V-GLVHLRERVLSEILEEN--L--KIGTLNL- 261 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~-~~~~~~-~-~~~~l~~~ll~~l~~~~--~--~~~~~~~- 261 (420)
....+++|.|++|+|||||.+.+... .+.+.+... ...... . -+.. .+++..+.-.. . .......
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccCCCcCcCCHH
Confidence 34579999999999999999988531 111111100 000000 0 0000 23333333211 1 1122221
Q ss_pred ---hHHHHHHhcCC--eEEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 262 ---PEYIKERLQQM--KVFIVLDDVN---KPEQ---LIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 262 ---~~~l~~~l~~~--~~LlVLDdv~---~~~~---l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
.-.+.+.+..+ +-+++||+.. +... +..++..+. ..|..||++|++...... .+.++.+.
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~~--~d~i~~l~ 162 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLSS--ADWIIDFG 162 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEEC
Confidence 34455566667 8899999862 2222 223332221 246678899998876542 55666553
No 210
>PHA00729 NTP-binding motif containing protein
Probab=97.17 E-value=0.0016 Score=58.18 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+.|+|.+|+||||||..+++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999998763
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.16 E-value=0.0012 Score=58.19 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
++++.++|+.|+||||.+..++.+...+-..+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999988765533444444
No 212
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00051 Score=57.19 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=28.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcc-ccc-eEEEEec
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSE-FEG-ECFITNV 229 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~-~~~v~~~ 229 (420)
--+.|+|+||+|||||+..+++.++.. |.. .+|..-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 357899999999999999999988766 653 3444433
No 213
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.002 Score=55.78 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=65.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhcccc------------CC
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLK------------IG 257 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~------------~~ 257 (420)
....+++|.|.+|.|||||++.++..... ..+.+++.... ... .. ......+ . ...+... ..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~~-~~-~~~~~~i-~-~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKD-IKK-EP-EEVKRRI-G-YLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-ccc-ch-HhhhccE-E-EEecCCccccCCcHHHHhhcC
Confidence 34679999999999999999999875432 34445543211 000 00 0000000 0 0000000 11
Q ss_pred CCCc-hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 258 TLNL-PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 258 ~~~~-~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
..+. .-.+.+.+..++-++++|+... . ..+..++..+. ..|..+|++|.+....... .+.++.+
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 1111 3456667778899999998732 2 22333333322 2356789999888765533 3445444
No 214
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.13 E-value=0.003 Score=54.28 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=37.9
Q ss_pred hHHHHHHhcCCeEEEEEeCC----CCHHH--HHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 262 PEYIKERLQQMKVFIVLDDV----NKPEQ--LIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv----~~~~~--l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
...+.+.+-+++-+|+-|.- +.... +-.++..++ ..|..||++|.+..+...+
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 66788888999999999954 33322 233444444 4688999999999887765
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.11 E-value=0.00015 Score=69.12 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.0
Q ss_pred CcccccccceeeecccccC----CCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 170 GSVGVNSRIRHIKSLLHLG----LPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.++|.++.++++.+++... ....++++|+|++|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999998888542 234689999999999999999999987644
No 216
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0027 Score=65.92 Aligned_cols=178 Identities=18% Similarity=0.222 Sum_probs=101.6
Q ss_pred CCCcccccccceee---eccccc-------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 168 FTGSVGVNSRIRHI---KSLLHL-------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 168 ~~~~vGR~~~l~~l---~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..++.|.++..++| .+.|.. +..-++-+.|+|++|.|||-||++++..- ++-|+. ++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~s----vSGS-- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS----VSGS-- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceee----echH--
Confidence 35677877655444 445542 22236788999999999999999999763 334444 1110
Q ss_pred HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH-----------------HHHHHHhcCCCCCCCC
Q 046970 238 LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP-----------------EQLIFLVGGLDRFGPR 300 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~-----------------~~l~~l~~~~~~~~~g 300 (420)
+++....+. ......+.....-.+.++++.+|+++.. ..+..++.....+...
T Consensus 379 ------EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ------EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ------HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 111111111 0000012222222346788888876322 2366676666655444
Q ss_pred cE--EEeecCChhhh-----hhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 301 SR--IIVTTRDKQVF-----DECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 301 ~~--IIiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
.. +|-+|+..+++ ..-..+..+.++.-+.....++|.-|+-..... .+..++++ |+...-|++=|-
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 43 33455544443 223356778888888899999999888444332 33345555 888888776553
No 217
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.09 E-value=0.0019 Score=58.76 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.3
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc------ccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE------FEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~v~ 227 (420)
|..+|..+-....++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 344555445567899999999999999999998653222 25678887
No 218
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.0033 Score=55.88 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=40.9
Q ss_pred CCCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEG 222 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~ 222 (420)
....++|.|...+.|.+-... ......-|.+||--|.|||+|++++.+.+....-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 445688988887777553221 12234568899999999999999999988776544
No 219
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00094 Score=56.73 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=66.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERL 269 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l 269 (420)
+..+++|.|.+|.|||||++.++..+.. ..+.+++.... ... ........ .+.-- ......+. .-.+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~-~~~~~~~~----~i~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK-LPLEELRR----RIGYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc-CCHHHHHh----ceEEE-eeCCHHHHHHHHHHHHH
Confidence 4579999999999999999999876532 45555554211 100 00111100 00000 00111112 44456666
Q ss_pred cCCeEEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 270 QQMKVFIVLDDVN---KPEQ---LIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 270 ~~~~~LlVLDdv~---~~~~---l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
...+-++++|+.. +... +..++..+. ..+..+|++|.+....... .++++.+.
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 7778899999873 2222 333332222 1246789999887766553 34555543
No 220
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.09 E-value=0.0015 Score=66.27 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=39.2
Q ss_pred hHHHHHHhcCCeEEEEEeCCC------CHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeCC
Q 046970 262 PEYIKERLQQMKVFIVLDDVN------KPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVEG 326 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~------~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~~ 326 (420)
...|.+.|-.++=+|+||.-. ...-++.++..+ +| -+||.|.|+..+..+ +..++++..
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 456777788889999999653 233345555442 45 699999999888775 344554443
No 221
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.09 E-value=0.0015 Score=63.02 Aligned_cols=110 Identities=13% Similarity=0.228 Sum_probs=64.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhc-cccCCCCCchHHHHHHhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEE-NLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~l~ 270 (420)
...+.|.|+.|.||||++..+.+.+.......++.. ... ....... ...+... ..........+.++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti----Edp---~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI----EDP---IEYVHRN-KRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE----cCC---hhhhccC-ccceEEccccCCCCcCHHHHHHHhhc
Confidence 468999999999999999999887765544444443 110 1100000 0000000 011111122677888899
Q ss_pred CCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhh
Q 046970 271 QMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQV 312 (420)
Q Consensus 271 ~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~ 312 (420)
..+=.+++|.+.+.+.....+... ..|..++.|......
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 999999999998887765544332 245556666665433
No 222
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.08 E-value=0.0079 Score=59.58 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+.++.++|.+|+||||++..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877654
No 223
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0013 Score=57.16 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=65.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc-CHHHHHHHHHHHHhhcccc--------------
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV-GLVHLRERVLSEILEENLK-------------- 255 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~-------------- 255 (420)
...+++|.|.+|.|||||++.++.... ...+.+.+.... ..... ........+. - ..+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~-~~~~~~~~~~~~~~i~-~-~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGED-LTDLEDELPPLRRRIG-M-VFQDFALFPHLTVLENIALG 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEE-ccccchhHHHHhhcEE-E-EecCCccCCCCCHHHheeec
Confidence 457999999999999999999986543 234555543211 10000 0011111000 0 000000
Q ss_pred CCCCCc-hHHHHHHhcCCeEEEEEeCCC---CH---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 256 IGTLNL-PEYIKERLQQMKVFIVLDDVN---KP---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 256 ~~~~~~-~~~l~~~l~~~~~LlVLDdv~---~~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
....+. .-.+.+.+..++-+++||+.. +. ..+..++..+.. ..+..||++|.+....... .++++.+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l 174 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDLDEAARL-ADRVVVL 174 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 000011 344566677788999999762 22 223333333221 1256788999887665533 3455544
No 224
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0024 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|.|.+|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 225
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.05 E-value=0.0036 Score=57.48 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998754
No 226
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.04 E-value=0.0036 Score=56.02 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|+|++|.|||||++.++...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356799999999999999999998753
No 227
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.03 E-value=0.0016 Score=60.27 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=65.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc---cCCCCC---chHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL---KIGTLN---LPEYI 265 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~---~~~~~~---~~~~l 265 (420)
...++|.|++|.|||||.+.++..+... .+.+++.... +.......++...+ .. ..+.. .....+ ....+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~~d~~~ei~~~~-~~-~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGIVDERSEIAGCV-NG-VPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eecchhHHHHHHHh-cc-cccccccccccccccchHHHHH
Confidence 4688999999999999999999876543 3444443111 11000111121110 00 11111 111111 13334
Q ss_pred HHHhc-CCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhh
Q 046970 266 KERLQ-QMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQV 312 (420)
Q Consensus 266 ~~~l~-~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~ 312 (420)
...+. ..+-++++|.+...+.+..+...+. .|..+|+||.+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 44444 5789999999988877777766553 57789999997655
No 228
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.03 E-value=0.005 Score=62.97 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=37.0
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899998888888765432 34567899999999999999998753
No 229
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.02 E-value=0.0027 Score=54.87 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=65.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhcccc----------CCCCC
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLK----------IGTLN 260 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----------~~~~~ 260 (420)
...+++|.|.+|.|||||.+.++..... ..+.+.+.... .. ..........+ . ...+... ....+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~-~~~~~~~~~~i-~-~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGAD-IS-QWDPNELGDHV-G-YLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEE-cc-cCCHHHHHhhe-E-EECCCCccccCcHHHHCcCHHH
Confidence 4569999999999999999999876432 24444443211 00 00111111100 0 0000000 11111
Q ss_pred c-hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 261 L-PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 261 ~-~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
. .-.+.+.+..++-+++||+... . ..+..++..+. ..|..||++|.+..... . .++++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 1 4455666777888999998732 2 22333333322 23667889998887654 3 4555555
No 230
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.011 Score=60.16 Aligned_cols=128 Identities=22% Similarity=0.203 Sum_probs=75.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc--hHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL--PEYIKER 268 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~--~~~l~~~ 268 (420)
..+.+.++|++|.|||.||+++++.....|-..-.- . +++...++ .+. .+.....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~----l~sk~vGe------sek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------E----LLSKWVGE------SEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------H----Hhccccch------HHHHHHHHHHHH
Confidence 456899999999999999999999654444211100 1 11111111 011 2223333
Q ss_pred hcCCeEEEEEeCCCCH-------------HHHHHHhcCCCCC--CCCcEEEeecCChhhhhh-----cCCCeEEEeCCCC
Q 046970 269 LQQMKVFIVLDDVNKP-------------EQLIFLVGGLDRF--GPRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLN 328 (420)
Q Consensus 269 l~~~~~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~ 328 (420)
.+..++.|.+|+++.. ..+..++..+... ..+..+|-||..+..... ......+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 3467899999998432 2233444333322 233445556654443332 1356788999999
Q ss_pred HHHHHHHHHhccc
Q 046970 329 KDESLELFSNFAF 341 (420)
Q Consensus 329 ~~ea~~L~~~~a~ 341 (420)
.++..+.|..+.-
T Consensus 412 ~~~r~~i~~~~~~ 424 (494)
T COG0464 412 LEERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999884
No 231
>PRK06762 hypothetical protein; Provisional
Probab=97.02 E-value=0.0037 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..++.|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999876
No 232
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.98 E-value=0.0011 Score=62.65 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=36.5
Q ss_pred eecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|..+|. .+-+..+++-|+|++|+||||||.+++......-..++|++
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 344555 44556789999999999999999999887666556677876
No 233
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.97 E-value=0.0073 Score=56.41 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=97.5
Q ss_pred CCcccccccceeeecccccC--CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccc--ccCHHHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLG--LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESE--RVGLVHLRER 244 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~--~~~~~~l~~~ 244 (420)
..++|-.++-.++..++... -.+...|.|+|+.|.|||+|......+ .+.+.-...+....+... +-.+..+..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 46889888888888888642 123456889999999999998877766 334444444433332221 2233344444
Q ss_pred HHHHHhhccccCCCCCc-hHHHHHHhcC------CeEEEEEeCCCCH----HH--HHHHhcC-CCCCCCCcEEEeecCCh
Q 046970 245 VLSEILEENLKIGTLNL-PEYIKERLQQ------MKVFIVLDDVNKP----EQ--LIFLVGG-LDRFGPRSRIIVTTRDK 310 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~-~~~l~~~l~~------~~~LlVLDdv~~~----~~--l~~l~~~-~~~~~~g~~IIiTtR~~ 310 (420)
+..++........+... ...+-..|.. .+++.|+|.++-- .| +-.+... ...-.|-|-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 43333332222333333 5555555543 3689999877422 11 2222211 11124566677899964
Q ss_pred hh-------hhhcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 311 QV-------FDECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 311 ~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.+ -....-..++-++.++-++-.++++...
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 22 2222223466677888999999888765
No 234
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.95 E-value=0.0011 Score=57.43 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=31.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568999999999999999999999887777777764
No 235
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.002 Score=61.77 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=56.6
Q ss_pred ceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCC
Q 046970 178 IRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIG 257 (420)
Q Consensus 178 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 257 (420)
+.++.+.|..+--...++.|-|.||||||||..+++.++..+. .+.++.. ..+...+.- -...+.....+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~Qikl-RA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKL-RADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHH-HHHHhCCCccceE
Confidence 3445555554434467999999999999999999999998776 6777761 111221111 1112221111111
Q ss_pred CCC--chHHHHHHhc-CCeEEEEEeCC
Q 046970 258 TLN--LPEYIKERLQ-QMKVFIVLDDV 281 (420)
Q Consensus 258 ~~~--~~~~l~~~l~-~~~~LlVLDdv 281 (420)
-.. ..+.+.+.+. .++-++|+|-+
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 111 1455555554 57899999987
No 236
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.92 E-value=0.006 Score=53.59 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=34.6
Q ss_pred hHHHHHHhcCCeEEEEEeCCCC---HHHHHH---HhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 262 PEYIKERLQQMKVFIVLDDVNK---PEQLIF---LVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~---~~~l~~---l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
.-.|.+.|.=++-++.+|...+ ++-..+ .+..+. ..|...|+.|.+...+...
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA--~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA--EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH--HcCCeEEEEechhHHHHHh
Confidence 6678888888999999999843 332222 222222 3566788888887766654
No 237
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.92 E-value=0.0024 Score=63.80 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=37.9
Q ss_pred ceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 178 IRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 178 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.+|.++|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555666655566789999999999999999999887655434566775
No 238
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=96.92 E-value=0.00075 Score=55.40 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=34.0
Q ss_pred ccEEecCccccccCcchHHHHHHHhhC-------CCce----------eeeC-CCCCCCcchHHHHHHhhhcceeEEEec
Q 046970 12 YDVFLSFRGEDTRDNFTSHLFAALRQK-------RIKI----------FIDE-EANRGDEISLALLNAIEGSKISIVIFS 73 (420)
Q Consensus 12 ~dvfis~~~~d~~~~~~~~L~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S 73 (420)
|.|||||++.|.. .....|.+.+... .+.. +.+. +....+.|...|.+.|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999854 2567777777663 2211 1121 223445789999999999999999999
Q ss_pred ccccccCC
Q 046970 74 KNYASSSG 81 (420)
Q Consensus 74 ~~y~~s~w 81 (420)
++=..|.|
T Consensus 80 ~~T~~s~w 87 (130)
T PF08937_consen 80 PNTAKSKW 87 (130)
T ss_dssp TT----HH
T ss_pred CCcccCcH
Confidence 99888998
No 239
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0027 Score=66.23 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=84.7
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc-ccc-----ceEEEEeccccccccCHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS-EFE-----GECFITNVREESERVGLVH 240 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~-----~~~~v~~~~~~~~~~~~~~ 240 (420)
..+..+||+.|++++.+.|.......+ .++|.+|+|||+++.-++.++-. ..+ ..++-.++. .
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g---------~ 236 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG---------S 236 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH---------H
Confidence 346699999999999998875433322 37899999999999999998643 222 112211111 1
Q ss_pred HHHHHHHHHhhccccCCCCCc-hHHHHHHh-cCCeEEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEeec
Q 046970 241 LRERVLSEILEENLKIGTLNL-PEYIKERL-QQMKVFIVLDDVNKP-----------EQLIFLVGGLDRFGPRSRIIVTT 307 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~g~~IIiTt 307 (420)
+ ..+... ..+.+. ...+.+.+ ...+++|.+|.++.. +...-|.+.+.. +.--.|=.||
T Consensus 237 L-------vAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 237 L-------VAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred H-------hccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 1 011100 111222 22222222 335899999987321 222334444432 2222344566
Q ss_pred CChhh------hhhcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 308 RDKQV------FDECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 308 R~~~~------~~~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
-++-- +.....-+.+.|...+.+++..++....
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 44321 0011133677899999999999887543
No 240
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0035 Score=61.83 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=79.4
Q ss_pred CCcccccc---cceeeecccccCC-------CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCH
Q 046970 169 TGSVGVNS---RIRHIKSLLHLGL-------PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGL 238 (420)
Q Consensus 169 ~~~vGR~~---~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 238 (420)
++.-|.|+ |++++.+.|.... .=++-|.++|+||.|||-||++++.... +-|....+.. +
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSE---F-- 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSE---F-- 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccc---h--
Confidence 44556665 5566666775432 1267889999999999999999987542 2222211100 0
Q ss_pred HHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH-------------HHHHHHhcCCCCCCCCcEEE
Q 046970 239 VHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKP-------------EQLIFLVGGLDRFGPRSRII 304 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~-------------~~l~~l~~~~~~~~~g~~II 304 (420)
. +++ .+. . ... .+.....-..-+|+|.+|.++.. +.+..++..+..|.++.-||
T Consensus 374 d----Em~---VGv----G-ArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 374 D----EMF---VGV----G-ARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred h----hhh---hcc----c-HHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 0 000 000 0 000 12222223446899999987432 23666776666565544333
Q ss_pred e--ecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 305 V--TTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 305 i--TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
| .|.-++.+. .-..+..+.|+.-+..--.++|..+.
T Consensus 442 vigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 442 VIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 3 343333322 22345566666666555566665554
No 241
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.90 E-value=0.0015 Score=61.73 Aligned_cols=47 Identities=32% Similarity=0.366 Sum_probs=36.1
Q ss_pred eecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|..+|. .+-+..+++.|+|++|+||||||.+++......-..++|++
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 344554 45566789999999999999999999887665555667776
No 242
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0042 Score=55.21 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
....+++|.|.+|.|||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3457999999999999999999987654
No 243
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.89 E-value=0.0038 Score=54.45 Aligned_cols=36 Identities=36% Similarity=0.467 Sum_probs=26.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+++|.|.+|.|||||++.++..... ..+.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~ 60 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLD 60 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 4568999999999999999999875432 23444443
No 244
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.89 E-value=0.0016 Score=54.78 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+|-|+|.+|.||||||+++.+++...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358899999999999999999999988766677775
No 245
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.014 Score=56.42 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=28.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc--cceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF--EGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~v~ 227 (420)
...+++++|++|+||||++..++.+....+ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998764433 3344443
No 246
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.87 E-value=0.0028 Score=63.27 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=36.9
Q ss_pred eeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 179 RHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 179 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.+|.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455566555556789999999999999999999987754434566765
No 247
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.87 E-value=0.00092 Score=57.56 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
++.|.|.+|.||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 248
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.86 E-value=0.012 Score=54.84 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=30.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
....++.|.|.+|+||||++.+++.....+ -..++|+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 345689999999999999999998876444 45566765
No 249
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.85 E-value=0.0054 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987653
No 250
>PRK07667 uridine kinase; Provisional
Probab=96.84 E-value=0.0012 Score=58.19 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=28.6
Q ss_pred cccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 183 SLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 183 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
+.+....+...+|+|.|.+|.||||+|..+...+...
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3443333456899999999999999999999977543
No 251
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0084 Score=52.06 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.+..+++|.|++|.||||+.+.++.-+..
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 35789999999999999999999986533
No 252
>PRK06696 uridine kinase; Validated
Probab=96.83 E-value=0.00055 Score=61.88 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....+|+|.|.+|+||||||+.++..+...
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356799999999999999999999987543
No 253
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.83 E-value=0.0064 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999998753
No 254
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.81 E-value=0.00095 Score=54.26 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.4
Q ss_pred EEEeccCcchHHHHHHHHHHHh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~ 216 (420)
|+|.|++|+||||||+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 255
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0075 Score=52.44 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
+.|.++|.||+||||+|++++..++++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4678999999999999999999876653
No 256
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0055 Score=54.28 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=38.3
Q ss_pred hHHHHHHhcCCeEEEEEeCCCCHHHHHH------HhcCCCCCCCCcEEEeecCChhhhhhcCCCeEE
Q 046970 262 PEYIKERLQQMKVFIVLDDVNKPEQLIF------LVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIY 322 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~~~~l~~------l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~ 322 (420)
..++.+.+--+|-+.|||..++--+++. ....+. .+++-+||.|....++.....+.++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 6667777777899999998765433222 222232 3566788888888888776544443
No 257
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.78 E-value=0.0046 Score=55.16 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998753
No 258
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0057 Score=52.46 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....+.|.|++|+|||||.+.++.-.+..
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 45688999999999999999999865544
No 259
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.77 E-value=0.006 Score=57.46 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...++++.|++|.|||||.+.++..++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4579999999999999999999986544
No 260
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0095 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..--.|+|++|.|||||.+.+...
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcc
Confidence 345679999999999999988764
No 261
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0055 Score=56.40 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|.+|.|||||++.++....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 457899999999999999999987543
No 262
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0073 Score=55.56 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46799999999999999999998764
No 263
>PRK09354 recA recombinase A; Provisional
Probab=96.76 E-value=0.0024 Score=60.97 Aligned_cols=47 Identities=34% Similarity=0.371 Sum_probs=37.1
Q ss_pred eecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|..+|. .+-+..+++-|+|++|+||||||.+++......-..++|++
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 444555 45566789999999999999999999887666556778886
No 264
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.74 E-value=0.0053 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 265
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0099 Score=57.50 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=27.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.++++|+|++|+||||++..++..+..+-..+.++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 578999999999999999999987654422344443
No 266
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.0014 Score=58.64 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.+.+.|+|++|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 267
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.74 E-value=0.0043 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....+++|.|.+|.|||||.+.++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999998875
No 268
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.73 E-value=0.01 Score=55.40 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=27.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+++|+|.+|.|||||++.++..+. ..+.+++.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~ 63 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQID 63 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEEC
Confidence 456999999999999999999987653 24555543
No 269
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.72 E-value=0.0032 Score=66.09 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....|+|+|.+|+|||||++-+....
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999988643
No 270
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.72 E-value=0.0046 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999999743
No 271
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.72 E-value=0.063 Score=50.96 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=33.2
Q ss_pred EEEeCCCCHHHHHHHHHhcccCCCCCc-hhHHHHHHHHHHHhcCChHHHH
Q 046970 321 IYEVEGLNKDESLELFSNFAFRQKICP-KDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 321 ~~~l~~L~~~ea~~L~~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal~ 369 (420)
.++|++++.+|+..++..+.-.+-... ...+...+++.-..+|+|.-+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 789999999999999987763332211 1222345666666799997653
No 272
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0079 Score=55.48 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|.+|.|||||++.++..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 467999999999999999999987543
No 273
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.70 E-value=0.016 Score=57.60 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=30.6
Q ss_pred cceeeecccc-----cCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 177 RIRHIKSLLH-----LGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 177 ~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+.++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3455566665 334457899999999999999999988764
No 274
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.70 E-value=0.0047 Score=55.05 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||.+.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999999998643
No 275
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.70 E-value=0.006 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|++|.|||||.+.++...
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998753
No 276
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0058 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999998654
No 277
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.69 E-value=0.00041 Score=57.59 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=29.3
Q ss_pred ccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 172 VGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 172 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
||....++++.+.+..-......|.|+|.+|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 345555555555554322334578899999999999999887753
No 278
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.014 Score=53.63 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|.+|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999998753
No 279
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.68 E-value=0.0014 Score=57.75 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.5
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988643
No 280
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.66 E-value=0.0075 Score=61.98 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....++|....++++.+.+..-......|.|+|.+|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999888776433345578899999999999999998754
No 281
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.66 E-value=0.0022 Score=68.18 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.+.++|+|++|.|||||.+.+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999998865
No 282
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.65 E-value=0.0064 Score=62.20 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=46.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
+..+++.++|++|+||||||.-++++. .|. ++=+. .+.......+-..+...+....... .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEIN----ASDeRt~~~v~~kI~~avq~~s~l~------------a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEIN----ASDERTAPMVKEKIENAVQNHSVLD------------A 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEec----ccccccHHHHHHHHHHHHhhccccc------------c
Confidence 457899999999999999999998863 121 22222 3334444444445544433322100 0
Q ss_pred cCCeEEEEEeCCCCH
Q 046970 270 QQMKVFIVLDDVNKP 284 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~ 284 (420)
.+++.-||+|.++-.
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 257889999998654
No 283
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.65 E-value=0.0016 Score=52.57 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccce
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGE 223 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~ 223 (420)
|.|+|.+|+||||+|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999887777543
No 284
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.017 Score=50.75 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHHHhcCCeEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 263 EYIKERLQQMKVFIVLDDVNK------PEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 263 ~~l~~~l~~~~~LlVLDdv~~------~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
--+.+.+.-++-+|.+|.--+ ...++++...+. ....|+|.|++..-+...
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRv 214 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARV 214 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHH
Confidence 345566777888999997632 345677776654 556688888887655443
No 285
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.64 E-value=0.0062 Score=57.73 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...+++|.|++|.|||||.+.++...
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998753
No 286
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0069 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999754
No 287
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.63 E-value=0.0083 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998754
No 288
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.63 E-value=0.015 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.9
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
+++|+|++|.|||||++.++.-
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999998743
No 289
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.63 E-value=0.01 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|.|.+|.|||||++.++..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999864
No 290
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.62 E-value=0.051 Score=55.61 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=116.8
Q ss_pred CCCCcccccccceeeeccccc--CC-CCceEEEEeccCcchHHHHHHHHHHHhhc-----cccc--eEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL--GL-PDFRIVGIWGMGGIGKTTFAGAIFNQISS-----EFEG--ECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~f~~--~~~v~~~~~~~~~~ 236 (420)
.+..+-+|+.+..+|.+.+.. .. .....+-|.|.+|.|||..+..|.+.+.. .-+. .+.+.+. .-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm----~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL----RLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce----eec
Confidence 456788999999999988753 22 33568999999999999999999986542 1222 3344422 233
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhc-----CCeEEEEEeCCCCH-----HHHHHHhcCCCCC-CCCcEEE
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQ-----QMKVFIVLDDVNKP-----EQLIFLVGGLDRF-GPRSRII 304 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~-----~~~~LlVLDdv~~~-----~~l~~l~~~~~~~-~~g~~II 304 (420)
....+...|...+.++... ... .+.+..++. .+++++++|+++.. +.+-.|. .|. .++++++
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f---dWpt~~~sKLv 543 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF---DWPTLKNSKLV 543 (767)
T ss_pred CHHHHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHh---cCCcCCCCceE
Confidence 4667777777776665331 111 555666554 34789999998543 2233332 222 4677755
Q ss_pred eec-CChh----------hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCch-hHHHHHHHHHHHhcCChHHHHHHH
Q 046970 305 VTT-RDKQ----------VFDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPK-DFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 305 iTt-R~~~----------~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
|.+ -+.. +...+ ....+...|.+.++-.++...+..+...-.. ..+=.+++|+...|..-.|+.+.-
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 433 2211 11112 2245678888888888888776643322121 222345666666666666666554
Q ss_pred HH
Q 046970 373 SF 374 (420)
Q Consensus 373 ~~ 374 (420)
+.
T Consensus 623 RA 624 (767)
T KOG1514|consen 623 RA 624 (767)
T ss_pred HH
Confidence 44
No 291
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.62 E-value=0.0075 Score=57.28 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||.+.++..+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998754
No 292
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.61 E-value=0.017 Score=65.39 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..++-|.++|++|.|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999864
No 293
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.61 E-value=0.012 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998754
No 294
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.012 Score=52.71 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=72.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh-
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL- 269 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l- 269 (420)
.++-+.++|++|.|||-||+.+++.- .+.|+. + +. ..+.+..+ ++.. .....+.-..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht-----~c~fir-v---sg----selvqk~i----gegs-----rmvrelfvmar 237 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-V---SG----SELVQKYI----GEGS-----RMVRELFVMAR 237 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-e---ch----HHHHHHHh----hhhH-----HHHHHHHHHHH
Confidence 46678899999999999999998752 333443 2 11 12222221 1110 0011111111
Q ss_pred cCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEeecCChhh-----hhhcCCCeEEEeCC
Q 046970 270 QQMKVFIVLDDVNKPE----------------QLIFLVGGLDRF--GPRSRIIVTTRDKQV-----FDECEVDSIYEVEG 326 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~ 326 (420)
..-+.++.+|.+++.. ..-.++..+..| .++.+||..|.--++ +..-..+..++.++
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 3457788888774431 123344444433 346677776653333 33334566788888
Q ss_pred CCHHHHHHHHHhcc
Q 046970 327 LNKDESLELFSNFA 340 (420)
Q Consensus 327 L~~~ea~~L~~~~a 340 (420)
-+.+.-.+++.-+.
T Consensus 318 p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 318 PNEEARLDILKIHS 331 (404)
T ss_pred CCHHHHHHHHHHhh
Confidence 88888888887665
No 295
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.61 E-value=0.0052 Score=58.26 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|++|.|||||.+.++..+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999999754
No 296
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.61 E-value=0.0068 Score=55.63 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356799999999999999999998654
No 297
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.59 E-value=0.0078 Score=60.98 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=34.1
Q ss_pred cceeeeccccc---CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 177 RIRHIKSLLHL---GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 177 ~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.++++..||.. +....+++.|+|++|+||||.++.+++.+ .|+..-|..
T Consensus 27 Kv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 27 KVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 44555555542 22335799999999999999999999876 344455653
No 298
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.59 E-value=0.0025 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEeccCcchHHHHHHHHHHHh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~ 216 (420)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 299
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0088 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+++|.|++|.|||||++.++...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998643
No 300
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.59 E-value=0.012 Score=53.74 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+..|+|+||+|||+|+..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999997653
No 301
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.59 E-value=0.012 Score=53.72 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 46799999999999999999999754
No 302
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.59 E-value=0.0048 Score=64.25 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...++|+|.+|.|||||++.+....
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 46789999999999999999988653
No 303
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0099 Score=55.28 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++...
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356799999999999999999998765
No 304
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.58 E-value=0.018 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|++|.|||||++.++...
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356799999999999999999998753
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.58 E-value=0.014 Score=52.68 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35699999999999999999999743
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.58 E-value=0.17 Score=50.16 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+.++.++|.+|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999998764
No 307
>PRK14974 cell division protein FtsY; Provisional
Probab=96.58 E-value=0.019 Score=54.85 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+.+++++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877654
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=96.58 E-value=0.15 Score=50.48 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=25.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+.++.++|++|+||||++..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998876554
No 309
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.58 E-value=0.0064 Score=63.33 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+....++|+|..|.|||||++-+...+ . ..+.+.+.
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~ 409 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKIN 409 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEEC
Confidence 356799999999999999999998765 3 24444443
No 310
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.57 E-value=0.0067 Score=55.40 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999998643
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.57 E-value=0.031 Score=47.23 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....++|+|++|+|||||.+.++.-+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 3457899999999999999999986544
No 312
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.57 E-value=0.013 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998753
No 313
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.57 E-value=0.0022 Score=57.32 Aligned_cols=26 Identities=42% Similarity=0.635 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|+|.|.+|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 314
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.57 E-value=0.0047 Score=59.19 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=32.4
Q ss_pred cccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 171 SVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
++|....++++.+.+..-......|.|+|.+|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 3566666666655554333334568899999999999999987643
No 315
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.01 Score=53.68 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||.+.++...
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45789999999999999999998754
No 316
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.57 E-value=0.0049 Score=59.11 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCCCceEEEEeccCcchHHHHHHHHHHHhhcccc-------ceEEE-----Eec--cccccccCHHHHHHHHHHHHhh--
Q 046970 188 GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE-------GECFI-----TNV--REESERVGLVHLRERVLSEILE-- 251 (420)
Q Consensus 188 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-------~~~~v-----~~~--~~~~~~~~~~~l~~~ll~~l~~-- 251 (420)
......++.|+|.+|.||||+.+.+.......-+ +.+-+ ... ++.....+-..+++++.+..+.
T Consensus 405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~ 484 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLN 484 (593)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchh
Confidence 3345679999999999999999999875433211 11111 000 1111122222344444332222
Q ss_pred -----------ccc--------cCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH---HHHHHHhcCCCCC--CCCcEEEee
Q 046970 252 -----------ENL--------KIGTLNL-PEYIKERLQQMKVFIVLDDVNKP---EQLIFLVGGLDRF--GPRSRIIVT 306 (420)
Q Consensus 252 -----------~~~--------~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~---~~l~~l~~~~~~~--~~g~~IIiT 306 (420)
.+. ...+.+. ...|.+.+++++-+++.|.+... .....++..+... ..|..+++.
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 111 1112222 67788889999999999987321 1111121111111 146667777
Q ss_pred cCChhhhhhcCCCeE
Q 046970 307 TRDKQVFDECEVDSI 321 (420)
Q Consensus 307 tR~~~~~~~~~~~~~ 321 (420)
|+.+++.+.+..+..
T Consensus 565 ThrpEv~~AL~PD~l 579 (593)
T COG2401 565 THRPEVGNALRPDTL 579 (593)
T ss_pred ecCHHHHhccCCcee
Confidence 777777666544443
No 317
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.56 E-value=0.001 Score=66.98 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCcccccccceeeecccc----cCCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 169 TGSVGVNSRIRHIKSLLH----LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+++|.+..+++|.+.|. .-....+++.++|++|+||||||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999988772 223456899999999999999999999865443
No 318
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.55 E-value=0.0015 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.0
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccc
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
|-|+|.+|+|||+||..++..+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998776543
No 319
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.55 E-value=0.0019 Score=46.48 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 320
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.55 E-value=0.0061 Score=56.44 Aligned_cols=45 Identities=33% Similarity=0.355 Sum_probs=37.7
Q ss_pred cccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 183 SLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 183 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.|..+-+..+++.|+|.+|+|||+++.++......+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344444567889999999999999999999998877788888887
No 321
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.55 E-value=0.033 Score=49.56 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999998643
No 322
>PRK08233 hypothetical protein; Provisional
Probab=96.55 E-value=0.002 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.54 E-value=0.02 Score=49.38 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 324
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.54 E-value=0.0075 Score=53.97 Aligned_cols=26 Identities=35% Similarity=0.267 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999753
No 325
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.54 E-value=0.0092 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
++++|+|++|.|||||.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998643
No 326
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0051 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999984
No 327
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.53 E-value=0.013 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999998653
No 328
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.52 E-value=0.012 Score=52.27 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=34.7
Q ss_pred HHHHhcCCeEEEEEeCCCC---H---H-HHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 265 IKERLQQMKVFIVLDDVNK---P---E-QLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 265 l~~~l~~~~~LlVLDdv~~---~---~-~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
+.+.+..++-++++|+... . . .+..++..+.. ..+..||++|++...... .+.++.+.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~-~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS-QKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-ccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4556678899999998732 2 2 33333333221 115568999998876543 45666554
No 329
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.023 Score=58.61 Aligned_cols=143 Identities=19% Similarity=0.215 Sum_probs=79.1
Q ss_pred CCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCH
Q 046970 169 TGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGL 238 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 238 (420)
+++=|.++-..+|.+-++. +-....-|.+||++|.|||-||++++....-.| +. + .+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS----V---KGP 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS----V---KGP 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee----e---cCH
Confidence 4455666665666554432 222355788999999999999999998764443 22 1 111
Q ss_pred HHHHHHHHHHHhhccccCCCCCc-hHHHH-HHhcCCeEEEEEeCCCCHH---------------HHHHHhcCCCCCC---
Q 046970 239 VHLRERVLSEILEENLKIGTLNL-PEYIK-ERLQQMKVFIVLDDVNKPE---------------QLIFLVGGLDRFG--- 298 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~~~~-~~~l~-~~l~~~~~LlVLDdv~~~~---------------~l~~l~~~~~~~~--- 298 (420)
+++..-.++. +. ...+. +.-...+|+|.+|.+++.. .+..++..+....
T Consensus 740 -----ELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 -----ELLNMYVGQS------EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred -----HHHHHHhcch------HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 2222222221 11 23333 3334589999999986542 1333443433222
Q ss_pred -CCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHH
Q 046970 299 -PRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLE 334 (420)
Q Consensus 299 -~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~ 334 (420)
.+.-||-.|.-+++ ++.-..++.+.|++=+.++...
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 33335544443333 3333467788888877776654
No 330
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.016 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999998754
No 331
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.013 Score=54.26 Aligned_cols=47 Identities=32% Similarity=0.357 Sum_probs=37.6
Q ss_pred ecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEe
Q 046970 182 KSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITN 228 (420)
Q Consensus 182 ~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~ 228 (420)
..+|..+-+..+++=|+|+.|.||||||.+++-.....-..++|++.
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 34454455568899999999999999999999877666668899983
No 332
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.49 E-value=0.0025 Score=56.85 Aligned_cols=27 Identities=44% Similarity=0.577 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|++|+|||||++.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998764
No 333
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.49 E-value=0.0087 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 45799999999999999999998763
No 334
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.49 E-value=0.012 Score=52.75 Aligned_cols=26 Identities=42% Similarity=0.494 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||++.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999754
No 335
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.016 Score=52.76 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999998754
No 336
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.004 Score=53.88 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=27.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
...+++|.|++|+||||+|+.++..+...-....++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456999999999999999999999875432233444
No 337
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.48 E-value=0.0032 Score=63.70 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=38.8
Q ss_pred ceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 178 IRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 178 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+..|.++|..+-....++.|.|++|+|||||+.+++.....+-+.++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34556667666667889999999999999999999987755555566665
No 338
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0089 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||.+.++..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999998754
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.48 E-value=0.013 Score=50.27 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=58.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhh----ccc--cCCCCCc-----
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILE----ENL--KIGTLNL----- 261 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~----~~~--~~~~~~~----- 261 (420)
..|-|++..|.||||.|..++-+...+--.++.+--+.. ....+-...++.+ .+.- ... ...+.+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg-~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG-AWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 467788889999999999999886554333332221111 1111222232222 1100 000 0011111
Q ss_pred ---hHHHHHHhcCC-eEEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEeecCCh
Q 046970 262 ---PEYIKERLQQM-KVFIVLDDVN--------KPEQLIFLVGGLDRFGPRSRIIVTTRDK 310 (420)
Q Consensus 262 ---~~~l~~~l~~~-~~LlVLDdv~--------~~~~l~~l~~~~~~~~~g~~IIiTtR~~ 310 (420)
.+..++.+... -=|||||.+. +.+.+..++... .++..+|+|.|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCC
Confidence 23334444444 4599999873 334444555443 4678999999986
No 340
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.02 Score=52.70 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346799999999999999999998754
No 341
>PRK04040 adenylate kinase; Provisional
Probab=96.46 E-value=0.0028 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=23.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|+|+|++|+||||+++.++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 342
>PRK03839 putative kinase; Provisional
Probab=96.46 E-value=0.0023 Score=55.68 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.6
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.45 E-value=0.014 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++...
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45699999999999999999998754
No 344
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.44 E-value=0.011 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
++.|+|.+|.||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 345
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.026 Score=51.77 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
....+++|.|.+|.|||||++.++....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3567999999999999999999987543
No 346
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.053 Score=48.69 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=26.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
+.++-|.++|++|+|||.||+++++.....|
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 4578899999999999999999999765544
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.43 E-value=0.0073 Score=52.52 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=60.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHh----hccc--cCCCCCc----
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEIL----EENL--KIGTLNL---- 261 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~----~~~~--~~~~~~~---- 261 (420)
...|.|+|..|-||||.|..++-+...+--.+..+--+... ...+-...++.+- .+. +... ...+.+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 35788999999999999999998865543333333322111 1112222222210 000 0000 0001101
Q ss_pred ----hHHHHHHhcC-CeEEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEeecCCh
Q 046970 262 ----PEYIKERLQQ-MKVFIVLDDVN--------KPEQLIFLVGGLDRFGPRSRIIVTTRDK 310 (420)
Q Consensus 262 ----~~~l~~~l~~-~~~LlVLDdv~--------~~~~l~~l~~~~~~~~~g~~IIiTtR~~ 310 (420)
.+..++.+.. +-=|||||.+. +.+++..++.. -.++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCC
Confidence 2333444444 34599999873 23444444444 34678999999976
No 348
>PTZ00301 uridine kinase; Provisional
Probab=96.43 E-value=0.003 Score=56.34 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=24.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..+|+|.|.+|.||||||+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998877543
No 349
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.43 E-value=0.022 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||.+.++...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999653
No 350
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.43 E-value=0.012 Score=54.64 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=21.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
+.|.|+|.||.||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 478999999999999999999987663
No 351
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.42 E-value=0.017 Score=55.72 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...+++|.|++|.|||||.+.++..+
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356799999999999999999998754
No 352
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.42 E-value=0.0013 Score=57.58 Aligned_cols=21 Identities=29% Similarity=0.169 Sum_probs=18.8
Q ss_pred EEEEeccCcchHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~ 214 (420)
++.|+|++|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999984
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.42 E-value=0.0051 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=22.1
Q ss_pred EEEeccCcchHHHHHHHHHHHhhcc
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
|.++|++|+||||+|+.++..+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999887543
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.41 E-value=0.01 Score=55.01 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=61.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCC-CCCchHHHHHHhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIG-TLNLPEYIKERLQ 270 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~~~~~l~~~l~ 270 (420)
...+.|.|..|.||||++..+.+.+...-..++.+.+..+.... + ...-..... .....+.++..++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~-----------~~q~~v~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-G-----------INQVQVNEKAGLTFARGLRAILR 147 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-C-----------ceEEEeCCcCCcCHHHHHHHHhc
Confidence 35899999999999999999988764422234444422221100 0 000000111 1122678888899
Q ss_pred CCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCC
Q 046970 271 QMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRD 309 (420)
Q Consensus 271 ~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~ 309 (420)
..+=.++++++.+.+....++.... .|..++-|..-
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa 183 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHT 183 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEecc
Confidence 9999999999998887665544422 34444444443
No 355
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.053 Score=53.80 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh--ccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS--SEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~v~ 227 (420)
.+++.++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3333455554
No 356
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.41 E-value=0.013 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 46799999999999999999998753
No 357
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.40 E-value=0.018 Score=54.01 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=28.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc-c-cceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE-F-EGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f-~~~~~v~ 227 (420)
..++++|+|++|+||||++..++..+..+ - ..+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45799999999999999999999876543 2 3344444
No 358
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.027 Score=54.29 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=28.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999987644433455554
No 359
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.015 Score=54.32 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=36.5
Q ss_pred hHHHHHHhcCCeEEEEEeCCC---CH---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEeC
Q 046970 262 PEYIKERLQQMKVFIVLDDVN---KP---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVE 325 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~---~~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~ 325 (420)
.-.+.+.+..++-+|+||+.. +. ..+..++..+. .+..||++|++....... .+.++.|.
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l~ 234 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK---EQYTIIMVTHNMQQASRV-ADWTAFFN 234 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 344556667788999999863 22 22333333332 346789999988766543 45666664
No 360
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.38 E-value=0.0029 Score=54.50 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....|.|+|++|+||||+|+.++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999986
No 361
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0091 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998743
No 362
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.38 E-value=0.01 Score=53.87 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred ceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 178 IRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 178 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+..|...+..+-+...++.|.|.+|+||||||.+++.....+-..++++.
T Consensus 10 ~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 10 RDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred EeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34455555544455779999999999999999888776533334556655
No 363
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.38 E-value=0.014 Score=56.56 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=58.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ 270 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 270 (420)
.++-+-|||..|.|||.|+-.+|+.+...-.. +.....+...+-+.+.... ...+....+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~------------R~HFh~Fm~~vh~~l~~~~---~~~~~l~~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR------------RVHFHEFMLDVHSRLHQLR---GQDDPLPQVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc------------cccccHHHHHHHHHHHHHh---CCCccHHHHHHHHH
Confidence 46778899999999999999999875432111 1112223333333332221 11122556667778
Q ss_pred CCeEEEEEeCC--CCH---HHHHHHhcCCCCCCCCcEEEeecC
Q 046970 271 QMKVFIVLDDV--NKP---EQLIFLVGGLDRFGPRSRIIVTTR 308 (420)
Q Consensus 271 ~~~~LlVLDdv--~~~---~~l~~l~~~~~~~~~g~~IIiTtR 308 (420)
++..||.||.+ .+. .-+..|+..+- ..|..++.||.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 88889999975 333 33555555442 45665555553
No 364
>PRK13409 putative ATPase RIL; Provisional
Probab=96.36 E-value=0.017 Score=59.94 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=68.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE-ecc---c-c--ccccCHHHH-------------HHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT-NVR---E-E--SERVGLVHL-------------RERVLSEIL 250 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~-~~~---~-~--~~~~~~~~l-------------~~~ll~~l~ 250 (420)
...+++|.|++|+|||||++.++...... .+.+++. .+. + . .....+.+. ..+++..+.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 46799999999999999999999754321 1222211 000 0 0 001111111 112222221
Q ss_pred hccc---cCCCCC---c-hHHHHHHhcCCeEEEEEeCCC---CH---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcC
Q 046970 251 EENL---KIGTLN---L-PEYIKERLQQMKVFIVLDDVN---KP---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECE 317 (420)
Q Consensus 251 ~~~~---~~~~~~---~-~~~l~~~l~~~~~LlVLDdv~---~~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~ 317 (420)
-... ....+. . .-.+...+..++-+++||+-. +. ..+..++..+.. ..|..||++|.+...+...
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~- 520 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYI- 520 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence 1110 111222 1 445667778889999999762 22 223333333211 1356689999988766544
Q ss_pred CCeEEEeCC
Q 046970 318 VDSIYEVEG 326 (420)
Q Consensus 318 ~~~~~~l~~ 326 (420)
.+.++.+..
T Consensus 521 aDrvivl~~ 529 (590)
T PRK13409 521 SDRLMVFEG 529 (590)
T ss_pred CCEEEEEcC
Confidence 345555543
No 365
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.044 Score=56.15 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=80.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQ 270 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~ 270 (420)
..-|.++|++|+|||-||.+++....-+ |+. + .+. +++..-.+.. .+. .+...+.-.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-----fis----v---KGP-----ElL~KyIGaS-----Eq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-----FIS----V---KGP-----ELLSKYIGAS-----EQNVRDLFERAQS 758 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-----EEE----e---cCH-----HHHHHHhccc-----HHHHHHHHHHhhc
Confidence 4568899999999999999998764322 333 1 111 2222222211 111 333333334
Q ss_pred CCeEEEEEeCCCCH-------------HHHHHHhcCCCC--CCCCcEEEe-ecCCh----hhhhhcCCCeEEEeCCCCHH
Q 046970 271 QMKVFIVLDDVNKP-------------EQLIFLVGGLDR--FGPRSRIIV-TTRDK----QVFDECEVDSIYEVEGLNKD 330 (420)
Q Consensus 271 ~~~~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~g~~IIi-TtR~~----~~~~~~~~~~~~~l~~L~~~ 330 (420)
.++|+|.+|.+++. ..+..++..+.. .-.|.-|+. |||-. .+++.-..++.+.-+.-+..
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 58999999988543 234556555431 124555554 66633 22333234455555556677
Q ss_pred HHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH
Q 046970 331 ESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL 366 (420)
Q Consensus 331 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 366 (420)
+-.++|....-....+. .-..+.++.+..|..-
T Consensus 839 eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHHHHhhccCCcc---ccchHHHhhhcCCCch
Confidence 77788876653222111 1123456666666643
No 366
>PRK06217 hypothetical protein; Validated
Probab=96.36 E-value=0.015 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.2
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|.|.|.+|.||||||+.+...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 367
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.02 Score=53.00 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=26.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
.+..++|||++|.|||-||+.++..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999999875554
No 368
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.35 E-value=0.0089 Score=54.54 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=36.4
Q ss_pred eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 180 HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.|.++|..+-+...++.|.|.+|+|||+||.++......+-+.++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344556556667889999999999999999998876444456677776
No 369
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.35 E-value=0.017 Score=51.06 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=26.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
.+++.|.|.+|.||||+++.+...+...-..++++
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 46888999999999999999888776653333333
No 370
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.35 E-value=0.016 Score=58.37 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||++.++...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 371
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.35 E-value=0.017 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|.+|.|||||++.++...
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999998653
No 372
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.34 E-value=0.0089 Score=62.20 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...++|+|.+|.|||||++.+....
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46789999999999999999998754
No 373
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.33 E-value=0.0033 Score=56.57 Aligned_cols=24 Identities=17% Similarity=-0.042 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
..++++|.|++|.||||+.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999887
No 374
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.33 E-value=0.032 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...+++|.|++|.|||||++.++...
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 356799999999999999999998754
No 375
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.0048 Score=56.00 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=99.5
Q ss_pred CcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc------cccceEEEEeccc------cccc--
Q 046970 170 GSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS------EFEGECFITNVRE------ESER-- 235 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~v~~~~~------~~~~-- 235 (420)
.+.++++.-..+.++.. ..+.+-+.++|++|.||-|.+..+.+++-+ +-+...|...... ++..
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 35555555555555544 235678889999999999999888887543 2334445442221 0000
Q ss_pred -------c--CHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeE-EEEEeCCCCH--HHHHHHhcCCCCCCCCcEE
Q 046970 236 -------V--GLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKV-FIVLDDVNKP--EQLIFLVGGLDRFGPRSRI 303 (420)
Q Consensus 236 -------~--~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVLDdv~~~--~~l~~l~~~~~~~~~g~~I 303 (420)
. .-.-+.++++.+...... +. . -..+.+ ++|+-.++.. +.-..|..........+|+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~q-ie---------~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQ-IE---------T-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcc-hh---------h-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 0 011122233332221111 00 0 011233 5566655433 1122233333334578888
Q ss_pred EeecCChh--hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 304 IVTTRDKQ--VFDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 304 IiTtR~~~--~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
|+...+.. +.+.-...-.+.++..+++|....++...-.....-+ .+++.+|+++++|+-.-
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRR 224 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHH
Confidence 87554321 1111123356789999999999999888755443333 47899999999998543
No 376
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.01 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|.+|.|||||++.++...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45789999999999999999999754
No 377
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.02 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|.+|.|||||++.++..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 356799999999999999999997644
No 378
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.0059 Score=54.03 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+++|+|++|+||||||+.+...+...-...+++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4679999999999999999999998755433455554
No 379
>PRK00625 shikimate kinase; Provisional
Probab=96.31 E-value=0.003 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998763
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.042 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999754
No 381
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.30 E-value=0.0034 Score=54.84 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.++++|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 382
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.013 Score=52.94 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=27.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.++-|.++|++|.|||-+|++++++. ..||+.
T Consensus 209 dppkgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 456788999999999999999999974 456665
No 383
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.29 E-value=0.0054 Score=58.75 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=37.4
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
+.++|+...+.++.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 56889988888888777543334557889999999999999988753
No 384
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.03 Score=50.51 Aligned_cols=140 Identities=18% Similarity=0.286 Sum_probs=75.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHH-HHHHHHHhhccccCCCCCchHHHHHH-
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLR-ERVLSEILEENLKIGTLNLPEYIKER- 268 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~-~~ll~~l~~~~~~~~~~~~~~~l~~~- 268 (420)
.++-+..+|++|.|||-+|++.+.+....|- .+. -++.....+. . ...++..
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL------------------KLAgPQLVQMfIGd------G--AkLVRDAF 257 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFL------------------KLAGPQLVQMFIGD------G--AKLVRDAF 257 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhccchHH------------------HhcchHHHhhhhcc------h--HHHHHHHH
Confidence 4667889999999999999999876544331 000 0111111111 0 1222222
Q ss_pred ---hcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCCC--CcEEEeecCC-----hhhhhhcCCCeEE
Q 046970 269 ---LQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFGP--RSRIIVTTRD-----KQVFDECEVDSIY 322 (420)
Q Consensus 269 ---l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~~--g~~IIiTtR~-----~~~~~~~~~~~~~ 322 (420)
-...+.++.+|.++.. ...-.++..+..|.+ ..+||..|.- +.++..-..+..+
T Consensus 258 aLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKI 337 (424)
T KOG0652|consen 258 ALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKI 337 (424)
T ss_pred HHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccc
Confidence 1345889999977322 113345555555544 4466765543 3333333445667
Q ss_pred EeCCCCHHHHHHHHHhcccC-CCCCchhHHHHHHH
Q 046970 323 EVEGLNKDESLELFSNFAFR-QKICPKDFLVLSKR 356 (420)
Q Consensus 323 ~l~~L~~~ea~~L~~~~a~~-~~~~~~~~~~~~~~ 356 (420)
+.+.-+.+.-.++++-++-+ +..++-+++++++.
T Consensus 338 EfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 338 EFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred cCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 77665655556666666533 22445566665543
No 385
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.27 E-value=0.0054 Score=56.72 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=33.5
Q ss_pred cccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 183 SLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 183 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.+..+-+...++.|.|.+|+|||+||.+++.....+-..++|+.
T Consensus 27 ~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 27 RKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred cccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 333444455789999999999999999999876544445677776
No 386
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.031 Score=54.51 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 387
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0072 Score=59.46 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=65.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccc-----eEEEEecccccc-----------------ccCHHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEG-----ECFITNVREESE-----------------RVGLVHLRERVLSEI 249 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~-----~~~v~~~~~~~~-----------------~~~~~~l~~~ll~~l 249 (420)
.+.-+++|.+|+|||||.+++++..-..|+. .+++.....+.. ......+...++..+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl 185 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL 185 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC
Confidence 5788999999999999999999832222322 222221111000 001122222233333
Q ss_pred hhccc----cCCCCC----chHHHHHHhcCCeEEEEEeCCCCHHH---HHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 250 LEENL----KIGTLN----LPEYIKERLQQMKVFIVLDDVNKPEQ---LIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 250 ~~~~~----~~~~~~----~~~~l~~~l~~~~~LlVLDdv~~~~~---l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
+-... ...+.. ..-.|.+.+-.++=||.||.-.+.-+ +..|-..+.. ....+||.|.+...++..
T Consensus 186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WKITSLIVSHDRNFLNTV 261 (582)
T ss_pred CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CCceEEEEeccHHHHHHH
Confidence 22111 111221 15667777788889999997643322 2222222221 225688889998776654
No 388
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.24 E-value=0.02 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
....++|+|++|.||||||+.+..
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHc
Confidence 456899999999999999999875
No 389
>PLN03211 ABC transporter G-25; Provisional
Probab=96.23 E-value=0.035 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|++|.|||||.+.++....
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999998653
No 390
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.015 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....++|.|.+|.|||||++.+.--+
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 45689999999999999999987643
No 391
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.22 E-value=0.0034 Score=57.93 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=33.2
Q ss_pred eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh--hcc----ccceEEEE
Q 046970 180 HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI--SSE----FEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~--~~~----f~~~~~v~ 227 (420)
.|.++|..+-....+.=|+|.+|+|||+|+.+++-.. ... -..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 3445555444456799999999999999999988643 222 12467776
No 392
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.22 E-value=0.02 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....+++|.|.+|.|||||.+.++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999864
No 393
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.20 E-value=0.0035 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.+++|+|++|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 394
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.20 E-value=0.011 Score=60.87 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|+.|.|||||++.+....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999988643
No 395
>PRK06547 hypothetical protein; Provisional
Probab=96.20 E-value=0.0047 Score=53.27 Aligned_cols=26 Identities=42% Similarity=0.461 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|+|.|++|+||||||+.+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999864
No 396
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.20 E-value=0.0088 Score=62.09 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|..|.|||||++.+....
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 346789999999999999999988654
No 397
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.20 E-value=0.044 Score=47.16 Aligned_cols=24 Identities=38% Similarity=0.314 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.++..|+|.+|+|||||...++-.
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhh
Confidence 578899999999999999998853
No 398
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.20 E-value=0.0044 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+++.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 399
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.19 E-value=0.01 Score=63.14 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....++|+|..|.|||||++.+....
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999988643
No 400
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.19 E-value=0.0069 Score=58.32 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...+++|.|++|.|||||++.++...
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345799999999999999999998643
No 401
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.0038 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
+.+++.|+|++|.|||||.+.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 567999999999999999998775
No 402
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0059 Score=54.02 Aligned_cols=30 Identities=40% Similarity=0.509 Sum_probs=26.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..+.+|+|.|.+|.||||+|+.++..+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346899999999999999999999988765
No 403
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.17 E-value=0.019 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.8
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
+....++|+|+.|.|||||++.+...
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999998864
No 404
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.16 E-value=0.0086 Score=61.10 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3569999999998888776544456688999999999999999998764
No 405
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.16 E-value=0.004 Score=61.84 Aligned_cols=47 Identities=21% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...++||+..++.+...+..+ ..|.|.|++|+|||+||+.++.....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 356999999999888776533 36889999999999999999986543
No 406
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.15 Score=48.14 Aligned_cols=130 Identities=8% Similarity=0.099 Sum_probs=75.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc---------cc-ceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE---------FE-GECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL 261 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------f~-~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~ 261 (420)
..+..++|..|.||+++|..+++.+-.. .+ ...+++ . ....-.+..+. ++...+.-..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~vd~Ir-~l~~~~~~~~-------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSKSEFL-SAINKLYFSS-------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCHHHHH-HHHHHhccCC--------
Confidence 5678899999999999999999886111 11 112221 0 00111111111 1111111000
Q ss_pred hHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCC-hhhhhh-cCCCeEEEeCCCCHHHHHHHHH
Q 046970 262 PEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRD-KQVFDE-CEVDSIYEVEGLNKDESLELFS 337 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~ 337 (420)
.-.+.+-++|+|+++.. .....|+..+...++.+.+|++|.+ ..+++. ......+++.+++.++..+.+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 00146778899998654 3355677666666677777765544 344433 3456889999999999998876
Q ss_pred hc
Q 046970 338 NF 339 (420)
Q Consensus 338 ~~ 339 (420)
..
T Consensus 160 ~~ 161 (299)
T PRK07132 160 SK 161 (299)
T ss_pred Hc
Confidence 64
No 407
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.15 E-value=0.011 Score=62.71 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...++|+...+..+.+.+..-......|.|+|.+|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3569999988888876665433344578899999999999999998754
No 408
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.031 Score=57.45 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||++.++..+
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999754
No 409
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.14 E-value=0.0064 Score=52.87 Aligned_cols=25 Identities=52% Similarity=0.716 Sum_probs=22.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 410
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.14 E-value=0.015 Score=60.32 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|++|.|||||++.++...
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998754
No 411
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.13 E-value=0.0044 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEeccCcchHHHHHHHHHHHhhc
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 412
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.12 E-value=0.019 Score=52.18 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=32.5
Q ss_pred hHHHHHHhcCCeEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 262 PEYIKERLQQMKVFIVLDDV------NKPEQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv------~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
...+...|-+++-+|.||.+ .....+..++...+. ..++.|+.||.+-.
T Consensus 164 raeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~-~~~aTVllTTH~~~ 218 (325)
T COG4586 164 RAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE-ERQATVLLTTHIFD 218 (325)
T ss_pred HHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHH-hhCceEEEEecchh
Confidence 45555666677889999965 333445566555432 36788999999753
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.12 E-value=0.0068 Score=54.81 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=34.5
Q ss_pred eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 180 HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
.|.++|..+-+...++.|.|.+|+|||+|+.+++.....+ -+.++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3445555444567899999999999999999988765444 45667776
No 414
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.11 E-value=0.0096 Score=57.59 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=55.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcccc---ceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFE---GECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKE 267 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~ 267 (420)
...|.|+|+.|.||||++..+.+.+....+ .++.+.+.-+. ....+... .....+......... ...++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~----~~~~~~~~--~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF----VYDEIETI--SASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE----eccccccc--cceeeeeeccccccCHHHHHHH
Confidence 469999999999999999999987754332 22333211111 11110000 000001110111122 677888
Q ss_pred HhcCCeEEEEEeCCCCHHHHHHHhcC
Q 046970 268 RLQQMKVFIVLDDVNKPEQLIFLVGG 293 (420)
Q Consensus 268 ~l~~~~~LlVLDdv~~~~~l~~l~~~ 293 (420)
.|+..+-.+++..+.+.+.....+..
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 89999999999999888877654433
No 415
>PRK13947 shikimate kinase; Provisional
Probab=96.11 E-value=0.0043 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998743
No 416
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.09 E-value=0.036 Score=52.52 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=32.0
Q ss_pred CcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 170 GSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
.++=.......+...+.. .+.|.|.|.+|+||||+|+.++..+...+
T Consensus 46 ~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 343333334445555542 34689999999999999999999875443
No 417
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.08 E-value=0.028 Score=55.30 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|++|.|||||.+.++..+
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356799999999999999999998743
No 418
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.038 Score=58.03 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....++|+|++|+|||||.+.++...
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 419
>PRK13409 putative ATPase RIL; Provisional
Probab=96.07 E-value=0.026 Score=58.54 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||.+.++..+
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999999998754
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.07 E-value=0.47 Score=46.93 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+|.++|++|+||||++..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999876544
No 421
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.07 E-value=0.042 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|.+|.|||||++.++...
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccc
Confidence 45799999999999999999998753
No 422
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.06 E-value=0.029 Score=57.41 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++..+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998753
No 423
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.05 E-value=0.016 Score=60.52 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|..|.|||||++.+....
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346789999999999999999998754
No 424
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.04 E-value=0.079 Score=52.75 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=48.1
Q ss_pred cccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhh-ccccceEEEEeccccccccCHHHHHHHHHHHH
Q 046970 171 SVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQIS-SEFEGECFITNVREESERVGLVHLRERVLSEI 249 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l 249 (420)
..|...-...|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|+. -......+..+++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 4555555666666655 445567999999999999999999997654 3323455554 2335556666666554
Q ss_pred h
Q 046970 250 L 250 (420)
Q Consensus 250 ~ 250 (420)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 425
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.04 E-value=0.0086 Score=54.27 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=34.6
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|.++|..+-+....+.|.|.+|+|||+|+.+++.....+-..++|+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 44445444556789999999999999999998865434445677776
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.03 E-value=0.0052 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 427
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.01 E-value=0.017 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 428
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.01 E-value=0.015 Score=50.73 Aligned_cols=33 Identities=30% Similarity=0.241 Sum_probs=26.7
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655445667765
No 429
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.01 E-value=0.0079 Score=52.47 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.+++.|+|++|+|||||+..+.......|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468999999999999999999999888886554443
No 430
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.01 E-value=0.0029 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...++.+.|..|.|||||++.+++.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999999875
No 431
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=0.02 Score=50.72 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=57.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhcc---cc--ceEEEEeccccccc-cCHHHHHHHHHHHHhhccccCCCCCc-hHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSE---FE--GECFITNVREESER-VGLVHLRERVLSEILEENLKIGTLNL-PEYIK 266 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~---f~--~~~~v~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~ 266 (420)
-..|.|+||+|||||.+.+++-++.. |. .++.++..++.... .+........-. +..+..- .+-+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~-------dVld~cpk~~gmm 211 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRM-------DVLDPCPKAEGMM 211 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhh-------hhcccchHHHHHH
Confidence 36789999999999999999876443 32 23333311111100 000000000000 0111111 22233
Q ss_pred HHhcC-CeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCCh
Q 046970 267 ERLQQ-MKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDK 310 (420)
Q Consensus 267 ~~l~~-~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~ 310 (420)
...++ -+=++|.|.+-..++..++...+ ..|.+++.|..--
T Consensus 212 maIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 212 MAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 33333 57899999998887777776664 4788888777543
No 432
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.00 E-value=0.0047 Score=54.66 Aligned_cols=23 Identities=52% Similarity=0.729 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 433
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.00 E-value=0.0045 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.3
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 434
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.019 Score=58.50 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=93.3
Q ss_pred CCCcccccccceeeec---ccccCC-------CCceEEEEeccCcchHHHHHHHHHHHhhcccc---ceEEEEecccccc
Q 046970 168 FTGSVGVNSRIRHIKS---LLHLGL-------PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE---GECFITNVREESE 234 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~---~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~v~~~~~~~~ 234 (420)
..+..|.|...+++.+ .|.... .-++-+.++|++|.|||.||++++....--|- +.-|+.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe------- 221 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE------- 221 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-------
Confidence 3556777665555544 333221 22678899999999999999999986433221 111111
Q ss_pred ccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCC
Q 046970 235 RVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFG 298 (420)
Q Consensus 235 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 298 (420)
... ........+...+..++-++++++|.++.. +.+..++.....++
T Consensus 222 -------------mfV----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 222 -------------MFV----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred -------------hhc----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 000 001111134444455567899999976322 24666766666565
Q ss_pred CCc--EEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCC-chhHHHHHHHHHHHhcCChHH
Q 046970 299 PRS--RIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFAFRQKIC-PKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 299 ~g~--~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~-~~~~~~~~~~i~~~~~G~PLa 367 (420)
.+. -||..|.-+++ +..-..+..+.++.-+...-.++++-|+-..... .-++ ..|++.+-|.-.|
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 333 23333332333 3333456777787777777888888666332221 2222 2366666665443
No 435
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0028 Score=64.57 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=41.2
Q ss_pred Ccccccccceeeecccc----cCCCCceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 170 GSVGVNSRIRHIKSLLH----LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
+-+|+++-.+++.+++. .++.+.++++.+|++|+|||++|+.++..+-..|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 45788888888877664 2445689999999999999999999999876655
No 436
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.99 E-value=0.027 Score=57.33 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||.+.++..+
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998754
No 437
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.068 Score=51.80 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=68.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh-------cccc-ceEEEEecc-c--cccccCHHHHHHHH-------HHHHhh-
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS-------SEFE-GECFITNVR-E--ESERVGLVHLRERV-------LSEILE- 251 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~-------~~f~-~~~~v~~~~-~--~~~~~~~~~l~~~l-------l~~l~~- 251 (420)
--..|+|+|+.|+|||||.+.+...+. .+-. .+-|.+.-. + .........+++.+ -.+++.
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 346799999999999999999886532 2211 122322000 0 00011112222211 111111
Q ss_pred ------ccccCCCCC---c-hHHHHHHhcCCeEEEEEeCCC---CHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCC
Q 046970 252 ------ENLKIGTLN---L-PEYIKERLQQMKVFIVLDDVN---KPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEV 318 (420)
Q Consensus 252 ------~~~~~~~~~---~-~~~l~~~l~~~~~LlVLDdv~---~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~ 318 (420)
....+.++. . ...+.+..-+.+-+||||.-. +.+.++.|...++.+. |. ||+.|.+..+....+
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-Gg-Vi~VsHDeRLi~eT~- 768 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-GG-VIMVSHDERLIVETD- 768 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-Cc-EEEEecccceeeecC-
Confidence 011222222 1 455666666788899999653 4456677776666553 33 666677766544332
Q ss_pred CeEEEeCCC
Q 046970 319 DSIYEVEGL 327 (420)
Q Consensus 319 ~~~~~l~~L 327 (420)
...+-++.-
T Consensus 769 C~LwVvE~Q 777 (807)
T KOG0066|consen 769 CNLWVVENQ 777 (807)
T ss_pred ceEEEEccC
Confidence 234444443
No 438
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.96 E-value=0.016 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
..++++|.|++|.||||+.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 439
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.96 E-value=0.036 Score=59.13 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|++|.|||||++.+....
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356799999999999999999998754
No 440
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.028 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|..|.|||||++.++...
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998654
No 441
>PRK05973 replicative DNA helicase; Provisional
Probab=95.95 E-value=0.022 Score=51.61 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=29.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
....++.|.|.+|+|||+|+.+++.....+-..++++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 35678999999999999999999886644444455554
No 442
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.94 E-value=0.011 Score=62.89 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....++|+|.+|.|||||++.++...
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998754
No 443
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.94 E-value=0.026 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEeccCcchHHHHHHHHHHHhh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+.+.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998875
No 444
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.93 E-value=0.059 Score=51.85 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=77.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc----ccc-------------------eEEEEeccccccccCHHHHHHHH-
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE----FEG-------------------ECFITNVREESERVGLVHLRERV- 245 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----f~~-------------------~~~v~~~~~~~~~~~~~~l~~~l- 245 (420)
.....++|+|.+|.|||||.+++..-+... |.+ ++|-+-.+..+....+..+..+=
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL 390 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL 390 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhh
Confidence 346799999999999999999999865443 221 22222222222222333322211
Q ss_pred ----------------HHHHhh---ccc-------cCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH------HHHHHHhc
Q 046970 246 ----------------LSEILE---ENL-------KIGTLNL-PEYIKERLQQMKVFIVLDDVNKP------EQLIFLVG 292 (420)
Q Consensus 246 ----------------l~~l~~---~~~-------~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~------~~l~~l~~ 292 (420)
...+.. ... +....+. .-.+.+.+-=|+-+++||.-.+. .++-+|+.
T Consensus 391 ~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 391 RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 111111 000 1112222 45666777778999999986443 23334444
Q ss_pred CCCCCCCCcEEEeecCChhhhhhcCCCeEEEeCC---CCHHHHHHHH
Q 046970 293 GLDRFGPRSRIIVTTRDKQVFDECEVDSIYEVEG---LNKDESLELF 336 (420)
Q Consensus 293 ~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~~---L~~~ea~~L~ 336 (420)
.+.. ..|-.-|..|.|-.|...+ +.+++-++. .+..++.++|
T Consensus 471 ~LQ~-k~~LsYLFISHDL~VvrAl-~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 471 DLQQ-KHGLSYLFISHDLAVVRAL-CHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHH-HhCCeEEEEeccHHHHHHh-hceEEEEeCCEEeeeCCHHHHh
Confidence 4332 2455677888888876654 333333321 3344555566
No 445
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.93 E-value=0.021 Score=61.01 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|..|.|||||++.+....
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346799999999999999999998643
No 446
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.93 E-value=0.043 Score=57.66 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++...
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998754
No 447
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.042 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|.|.+|.|||||++.++..
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 448
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.90 E-value=0.0053 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998874
No 449
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.034 Score=49.62 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=28.2
Q ss_pred cccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHH
Q 046970 173 GVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 173 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
|....++.+.--+. ....|+|.|++|.|||||.+.+...
T Consensus 15 ~~~~aL~~Vnl~I~----~GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 15 GGHQALKDVNLEIN----QGEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred CCceeeeeEeEEeC----CCcEEEEECCCCCcHHHHHHHHhcc
Confidence 44444454443333 4569999999999999999998864
No 450
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.90 E-value=0.0081 Score=50.59 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=18.4
Q ss_pred EeccCcchHHHHHHHHHHHh
Q 046970 197 IWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 197 I~G~gGiGKTtLa~~~~~~~ 216 (420)
|.|+||+||||+|+.++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 451
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.89 E-value=0.0058 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|.|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 452
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.89 E-value=0.069 Score=48.70 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 188 GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 188 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
+-....++.|.|.+|+|||+++.+++.....+ -..++|+.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 34456799999999999999999998876443 34556665
No 453
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.88 E-value=0.022 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEeccCcchHHHHHHHHHHHh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~ 216 (420)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 454
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.87 E-value=0.039 Score=56.43 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||++.++...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 46799999999999999999998643
No 455
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.02 Score=55.92 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|.|||||.+.++...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998743
No 456
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.87 E-value=0.024 Score=58.95 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|++|.|||||++.+....
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 346799999999999999999887643
No 457
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.0066 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.3
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|.|.|++|+||||+|+.+++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 58899999999999999999876
No 458
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.86 E-value=0.0056 Score=53.44 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.85 E-value=0.012 Score=48.99 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhc-cccceEEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISS-EFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~v~ 227 (420)
++|.|+|..|+|||||++.+.+.+.. .+...+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47899999999999999999998764 444444444
No 460
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.84 E-value=0.015 Score=56.45 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=60.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEEeccccccccCHHHHHHHHHHHHhhccccC-CCCCc-hHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFITNVREESERVGLVHLRERVLSEILEENLKI-GTLNL-PEYIKER 268 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-~~~~~-~~~l~~~ 268 (420)
..+.|+|+.|.||||++..+.+.+....+ ..+-+.+.-+.... .... +.. ..+ ... .+... .+.++..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~~~----~~~--~~q-~evg~~~~~~~~~l~~a 221 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SPDD----LLP--PAQ-SQIGRDVDSFANGIRLA 221 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CCce----eec--ccc-cccCCCccCHHHHHHHh
Confidence 47889999999999999999887754332 23333322111000 0000 000 000 011 11122 6778889
Q ss_pred hcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCC
Q 046970 269 LQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRD 309 (420)
Q Consensus 269 l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~ 309 (420)
|+..+=.++++.+.+.+..+..+... ..|..++-|-.-
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa 259 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHV 259 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCC
Confidence 99999999999999888877544332 245445544443
No 461
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.84 E-value=0.0093 Score=54.10 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=26.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....+++|.|++|.|||||++.+...+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 357899999999999999999999877654
No 462
>PRK13949 shikimate kinase; Provisional
Probab=95.84 E-value=0.0067 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.7
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
-|.|+|++|.||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 463
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.014 Score=49.54 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=30.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+|-++|++|.||||||..+...+.........++
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4678999999999999999999999877655444443
No 464
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.83 E-value=0.024 Score=56.92 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=34.6
Q ss_pred hHHHHHHhcCCeEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 262 PEYIKERLQQMKVFIVLDDVNK------PEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~------~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
...+.-.|..++-|||+|.-.. ..++-+++..+.. ..|.-+|++|.+..+....
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~ 221 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAEL 221 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHh
Confidence 3455566788899999997632 2333333333221 3577899999999886654
No 465
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.83 E-value=0.022 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEeccCcchHHHHHHHHHHHh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~ 216 (420)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 466
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.82 E-value=0.021 Score=60.86 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|.+|.|||||++.+....
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346789999999999999999998643
No 467
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.81 E-value=0.017 Score=49.63 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887653
No 468
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.81 E-value=0.015 Score=54.12 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=28.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.+++.++|++|+||||++..++..+...-..+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999999987765533344443
No 469
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.058 Score=57.47 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=64.6
Q ss_pred CcccccccceeeecccccC---C---CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 170 GSVGVNSRIRHIKSLLHLG---L---PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~---~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
.++|-+..+..|.+.+... . .....+.+.|+.|+|||-||++++..+.+..+.-+-++ +....+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh
Confidence 3455555555554444211 1 13567789999999999999999998866655554444 222222
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCe-EEEEEeCCCCH
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMK-VFIVLDDVNKP 284 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVLDdv~~~ 284 (420)
.+.+.+.+...-..+....|.+.++.++ .++.||||+..
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3444444443444444667888888876 58889999654
No 470
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.0069 Score=51.26 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.6
Q ss_pred EEEEeccCcchHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIF 213 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~ 213 (420)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 471
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.043 Score=55.86 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=36.8
Q ss_pred hHHHHHHhcCCeEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 262 PEYIKERLQQMKVFIVLDDV------NKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv------~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
.-.+.+.+..++-+|+||+- .....+..++..+. ..|..||++|.+....... +++++.+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~--~~~~tvi~vsHd~~~~~~~-~d~v~~l 464 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA--KKDKGIIIISSEMPELLGI-TDRILVM 464 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH--HCCCEEEEECCChHHHHhh-CCEEEEE
Confidence 44556667778899999975 23333444443333 2356699999987765543 3455555
No 472
>PRK04328 hypothetical protein; Provisional
Probab=95.79 E-value=0.013 Score=53.92 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=35.6
Q ss_pred eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 180 HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.|.++|..+-+...++.|.|.+|.|||+|+.+++.....+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344555555556789999999999999999998876434445666765
No 473
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.03 Score=56.28 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+++|+|++|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 36799999999999999999999876443
No 474
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.78 E-value=0.024 Score=56.31 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=33.5
Q ss_pred hHHHHHHhcCCeEEEEEeCCCCH---H---HHHHHhcCCCCCCCCcEEEeecCChhhhhhc
Q 046970 262 PEYIKERLQQMKVFIVLDDVNKP---E---QLIFLVGGLDRFGPRSRIIVTTRDKQVFDEC 316 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~~---~---~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~ 316 (420)
...|.+.|-.+|-||.||+-.+- + -++.++.... .+ .++|++|+...++..
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~-~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RI-ILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---Cc-eEEEEecchhhhhhH
Confidence 45566667778999999986332 2 2444444432 22 688999998877665
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.78 E-value=0.0091 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHHH
Q 046970 189 LPDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....+.+.|+|++|+|||||+..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345789999999999999999998754
No 476
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.77 E-value=0.0094 Score=54.05 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=24.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....+|+|+|+||.|||||..++...++..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 356799999999999999999999877654
No 477
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.77 E-value=0.037 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|.|++|.|||||.+.++..
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999974
No 478
>PRK08506 replicative DNA helicase; Provisional
Probab=95.77 E-value=0.11 Score=52.31 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=46.9
Q ss_pred cccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHh
Q 046970 171 SVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEIL 250 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~ 250 (420)
..|...-+..|.+++ .+-.....+.|-|.+|+|||++|..++.....+-..++|+. -......+...++....
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHhc
Confidence 445555555555554 24445679999999999999999999987644323444443 23455666666665543
No 479
>PTZ00494 tuzin-like protein; Provisional
Probab=95.76 E-value=0.19 Score=49.17 Aligned_cols=207 Identities=13% Similarity=0.106 Sum_probs=110.7
Q ss_pred hHHhHHHHhhhhcc-------------ccccCCCCCch--hhHHHHHHHHHHHhhhcccc-----cccCCCCcccccccc
Q 046970 119 KVHKWSGALTEASN-------------ISGWDSTNMRP--EARLVDEIVKDIMKKLKDKL-----LSRDFTGSVGVNSRI 178 (420)
Q Consensus 119 ~~~~w~~al~~~~~-------------~~g~~~~~~~~--e~~~i~~i~~~v~~~l~~~~-----~~~~~~~~vGR~~~l 178 (420)
+-+.||-++++-+. .-||.+++... .+-...-.++...+.+++.. .......+|.|+.+-
T Consensus 301 KERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE 380 (664)
T PTZ00494 301 KDTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEE 380 (664)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHH
Confidence 34567777765332 24455554432 22333344455555543332 122567899999998
Q ss_pred eeeeccccc-CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccC-
Q 046970 179 RHIKSLLHL-GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKI- 256 (420)
Q Consensus 179 ~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~- 256 (420)
.-+.+.|.+ +...++++.+.|.-|.||++|.+....+- --..++++ ++. .++-++.+.+.+.-+..+.
T Consensus 381 ~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VRg------~EDtLrsVVKALgV~nve~C 450 (664)
T PTZ00494 381 ALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VGG------TEDTLRSVVRALGVSNVEVC 450 (664)
T ss_pred HHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ecC------CcchHHHHHHHhCCCChhhh
Confidence 888888864 34458999999999999999999776542 23455665 221 2223344444444333211
Q ss_pred CCC-Cc----hHHHHHHhcCCeEEEEEe--CCCCHHH----HHHHhcCCCCCCCCcEEEeecCChhhhhh---cCCCeEE
Q 046970 257 GTL-NL----PEYIKERLQQMKVFIVLD--DVNKPEQ----LIFLVGGLDRFGPRSRIIVTTRDKQVFDE---CEVDSIY 322 (420)
Q Consensus 257 ~~~-~~----~~~l~~~l~~~~~LlVLD--dv~~~~~----l~~l~~~~~~~~~g~~IIiTtR~~~~~~~---~~~~~~~ 322 (420)
.+. +- ....+....++.-+|||- +-.+... .-.|... ..-|+|++.---+.+-.. ...-..|
T Consensus 451 GDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EVplESLT~~n~~LPRLDFy 526 (664)
T PTZ00494 451 GDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAVPMKALTPLNVSSRRLDFY 526 (664)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeechHhhhchhhccCccceeE
Confidence 111 11 112222234454555553 2222221 1122222 245677765443332111 1123678
Q ss_pred EeCCCCHHHHHHHHHhc
Q 046970 323 EVEGLNKDESLELFSNF 339 (420)
Q Consensus 323 ~l~~L~~~ea~~L~~~~ 339 (420)
-+++++.++|.++-...
T Consensus 527 ~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 527 CIPPFSRRQAFAYAEHT 543 (664)
T ss_pred ecCCcCHHHHHHHHhcc
Confidence 89999999998877654
No 480
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.76 E-value=0.06 Score=55.65 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+...+++|+|++|+|||||.+.++..+
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999999764
No 481
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.76 E-value=0.017 Score=55.14 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.6
Q ss_pred eeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc------cceEEEE
Q 046970 180 HIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF------EGECFIT 227 (420)
Q Consensus 180 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~v~ 227 (420)
.+.++|..+-+...++-|+|++|+|||+|+.+++....... ..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 34445554455678999999999999999999987643211 3577776
No 482
>PRK13948 shikimate kinase; Provisional
Probab=95.75 E-value=0.0087 Score=52.07 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+.|.++|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356888999999999999999998864
No 483
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.74 E-value=0.03 Score=53.00 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=48.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc-----cCCCCCc-hH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL-----KIGTLNL-PE 263 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~-----~~~~~~~-~~ 263 (420)
+..+++-|+|+.|+||||||.++.......-..++|++.-+. +-...+..++-... ..+..+. ..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~---------ld~~~a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHA---------LDPEYAESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS------------HHHHHHTT--GGGEEEEE-SSHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCccc---------chhhHHHhcCccccceEEecCCcHHHHHH
Confidence 447899999999999999999999877666566788872211 11222333322111 1122222 44
Q ss_pred HHHHHhcCC-eEEEEEeCCCC
Q 046970 264 YIKERLQQM-KVFIVLDDVNK 283 (420)
Q Consensus 264 ~l~~~l~~~-~~LlVLDdv~~ 283 (420)
.+...++.. --++|+|.|..
T Consensus 122 ~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CTT
T ss_pred HHHHHhhcccccEEEEecCcc
Confidence 555555543 45899998743
No 484
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.73 E-value=0.0081 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEeccCcchHHHHHHHHHHHh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~ 216 (420)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 485
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.73 E-value=0.0067 Score=50.25 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=21.8
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
+++|+|++|+|||||++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999999875443
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.72 E-value=0.0048 Score=54.06 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=51.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhcccc---CCCCCchHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLK---IGTLNLPEYIKE 267 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~~~~~l~~ 267 (420)
....++|.|+.|.|||||++.+...+... ...+.+.+..+..... .... ++...... .......+.++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 35689999999999999999998876532 2333333221111000 0000 00000000 011112566777
Q ss_pred HhcCCeEEEEEeCCCCHHHHHH
Q 046970 268 RLQQMKVFIVLDDVNKPEQLIF 289 (420)
Q Consensus 268 ~l~~~~~LlVLDdv~~~~~l~~ 289 (420)
.++..+-.++++.+.+.+.+..
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~ 117 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDL 117 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHH
Confidence 7888889999999988776543
No 487
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.72 E-value=0.026 Score=48.15 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
+.+.|+|++|.|||++.+.+.-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999764
No 488
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.0094 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|+|.+|+|||||++.++.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999864
No 489
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.71 E-value=0.03 Score=58.09 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|++|.|||||++.++...
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356799999999999999999988643
No 490
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.70 E-value=0.036 Score=48.61 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
..++.|.|++|+||||++.+++..+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 458899999999999999999987643
No 491
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.69 E-value=0.0097 Score=52.53 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..++.|.|.+|+||||+|+.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.68 E-value=0.0076 Score=57.29 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=60.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc--cCCCCCchHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL--KIGTLNLPEYIKER 268 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~l~~~ 268 (420)
....++|.|..|.|||||++.+...+... ...+.+.+..+..... .... .+..... ........+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~------~~~~-~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPH------PNYV-HLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCC------CCEE-EEEecCCCCCcCccCHHHHHHHH
Confidence 34689999999999999999998766443 2333443222211110 0000 0000000 11112226677778
Q ss_pred hcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcE-EEeecCChh
Q 046970 269 LQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSR-IIVTTRDKQ 311 (420)
Q Consensus 269 l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~-IIiTtR~~~ 311 (420)
|+..+-.+++|.+...+.+. ++.... .|.. ++.|++...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~-~l~a~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFD-FIRAVN---TGHPGSITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHH-HHHHHh---cCCCeEEEEEeCCC
Confidence 88899999999998866554 343332 3333 466665443
No 493
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.67 E-value=0.036 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
++++|+|++|.||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 494
>PF13245 AAA_19: Part of AAA domain
Probab=95.67 E-value=0.029 Score=41.15 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=18.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+++.|.|++|.|||+++.+....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999996666555443
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=95.64 E-value=0.018 Score=53.25 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999976644
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.64 E-value=0.03 Score=50.53 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=33.9
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|.+.|..+-+...++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34445444455789999999999999999999876544434556665
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.0097 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999865
No 498
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.63 E-value=0.035 Score=48.37 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...++.|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987653
No 499
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.63 E-value=0.0072 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEeccCcchHHHHHHHHHHHh
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.|+|++|+||||+|+.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 500
>PRK14530 adenylate kinase; Provisional
Probab=95.63 E-value=0.0095 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.|.|.|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
Done!