Query 046970
Match_columns 420
No_of_seqs 399 out of 2808
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-44 3.8E-49 312.3 8.4 158 2-161 26-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 2.1E-44 7.1E-49 306.1 8.4 157 1-164 1-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 5.9E-35 2E-39 298.0 20.3 238 172-419 131-400 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-31 1.3E-35 294.3 11.9 241 167-419 122-390 (1249)
5 1vt4_I APAF-1 related killer D 100.0 4E-29 1.4E-33 261.2 12.2 226 169-419 128-382 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 2.7E-28 9.1E-33 251.5 15.1 239 167-419 122-390 (591)
7 3h16_A TIR protein; bacteria T 99.9 2.1E-27 7.3E-32 200.8 3.9 100 8-108 17-134 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.8 3E-23 1E-27 172.7 -1.7 120 3-127 2-145 (146)
9 1fyx_A TOLL-like receptor 2; b 99.8 3.5E-19 1.2E-23 149.1 4.3 81 8-90 2-104 (149)
10 2j67_A TOLL like receptor 10; 99.7 6.3E-19 2.2E-23 151.4 5.2 85 6-92 30-136 (178)
11 2js7_A Myeloid differentiation 99.7 4.1E-19 1.4E-23 150.2 3.2 84 7-92 12-117 (160)
12 1t3g_A X-linked interleukin-1 99.7 5.4E-18 1.8E-22 143.2 5.3 84 10-93 1-115 (159)
13 2qen_A Walker-type ATPase; unk 99.6 1.6E-15 5.5E-20 145.2 11.0 196 167-375 10-249 (350)
14 2fna_A Conserved hypothetical 99.6 5.1E-15 1.7E-19 142.0 11.7 196 167-376 11-254 (357)
15 1w5s_A Origin recognition comp 99.6 1.1E-14 3.9E-19 142.7 12.3 199 167-372 20-266 (412)
16 2qby_B CDC6 homolog 3, cell di 99.5 4.8E-13 1.6E-17 129.9 16.7 193 168-371 19-245 (384)
17 1njg_A DNA polymerase III subu 99.4 1.5E-12 5.1E-17 117.5 14.3 197 167-375 21-231 (250)
18 2qby_A CDC6 homolog 1, cell di 99.4 2.9E-13 1E-17 131.1 10.1 196 167-369 18-242 (386)
19 2v1u_A Cell division control p 99.4 9.5E-13 3.3E-17 127.6 12.1 192 167-366 17-243 (387)
20 1fnn_A CDC6P, cell division co 99.3 6.9E-12 2.4E-16 121.7 14.0 197 167-371 15-246 (389)
21 2chg_A Replication factor C sm 99.3 6.9E-12 2.4E-16 111.5 12.6 185 167-372 15-204 (226)
22 3j0a_A TOLL-like receptor 5; m 99.3 1.9E-12 6.4E-17 138.6 7.1 85 7-93 666-775 (844)
23 1sxj_B Activator 1 37 kDa subu 99.2 8E-11 2.8E-15 111.1 9.8 186 167-374 19-212 (323)
24 1iqp_A RFCS; clamp loader, ext 99.1 6.2E-10 2.1E-14 105.2 11.6 185 167-373 23-213 (327)
25 2chq_A Replication factor C sm 99.0 3.2E-09 1.1E-13 99.9 13.8 177 167-371 15-203 (319)
26 1jr3_A DNA polymerase III subu 98.9 4.2E-09 1.4E-13 101.4 11.9 194 167-372 14-221 (373)
27 3te6_A Regulatory protein SIR3 98.9 1E-08 3.5E-13 95.9 12.5 164 170-340 21-211 (318)
28 1hqc_A RUVB; extended AAA-ATPa 98.9 6.1E-09 2.1E-13 98.4 10.5 176 167-375 10-214 (324)
29 1jbk_A CLPB protein; beta barr 98.9 4.8E-09 1.6E-13 90.6 8.0 50 167-218 20-69 (195)
30 3h4m_A Proteasome-activating n 98.8 2E-08 7E-13 93.0 12.1 181 167-371 15-230 (285)
31 3bos_A Putative DNA replicatio 98.8 2.5E-09 8.4E-14 96.3 4.5 174 167-372 26-217 (242)
32 3d8b_A Fidgetin-like protein 1 98.8 1.6E-07 5.4E-12 90.0 16.7 204 144-374 63-297 (357)
33 2z4s_A Chromosomal replication 98.8 1.7E-08 5.8E-13 99.5 9.4 158 192-370 130-304 (440)
34 1sxj_D Activator 1 41 kDa subu 98.7 5.5E-08 1.9E-12 92.8 12.2 193 167-370 35-233 (353)
35 1sxj_A Activator 1 95 kDa subu 98.7 6.8E-08 2.3E-12 97.2 13.0 185 167-371 37-252 (516)
36 1d2n_A N-ethylmaleimide-sensit 98.7 2.2E-07 7.5E-12 85.4 14.5 191 169-386 33-257 (272)
37 3b9p_A CG5977-PA, isoform A; A 98.7 2.5E-07 8.6E-12 86.1 14.1 182 167-373 19-234 (297)
38 1sxj_E Activator 1 40 kDa subu 98.7 1.2E-07 4E-12 90.7 11.9 198 167-372 12-237 (354)
39 2qp9_X Vacuolar protein sortin 98.7 4.1E-07 1.4E-11 87.0 15.0 181 167-372 49-261 (355)
40 3uk6_A RUVB-like 2; hexameric 98.6 2.8E-07 9.5E-12 88.5 13.9 201 168-372 43-303 (368)
41 3eie_A Vacuolar protein sortin 98.6 4.4E-07 1.5E-11 85.6 14.8 183 167-373 16-229 (322)
42 1l8q_A Chromosomal replication 98.6 3E-07 1E-11 86.8 13.0 178 167-367 9-203 (324)
43 3pvs_A Replication-associated 98.6 2.8E-07 9.7E-12 90.7 13.1 177 167-371 24-214 (447)
44 3pfi_A Holliday junction ATP-d 98.6 1.7E-07 5.7E-12 89.0 11.0 173 167-372 27-227 (338)
45 2qz4_A Paraplegin; AAA+, SPG7, 98.6 3.6E-07 1.2E-11 83.2 12.8 183 169-373 6-223 (262)
46 2zan_A Vacuolar protein sortin 98.6 9.1E-07 3.1E-11 87.2 16.4 184 167-373 132-346 (444)
47 1xwi_A SKD1 protein; VPS4B, AA 98.6 1.8E-06 6.3E-11 81.3 16.8 157 192-373 45-224 (322)
48 3syl_A Protein CBBX; photosynt 98.5 2.2E-07 7.6E-12 86.9 9.7 128 191-341 66-218 (309)
49 3vfd_A Spastin; ATPase, microt 98.5 1.5E-06 5E-11 84.3 15.2 183 167-374 113-328 (389)
50 2p65_A Hypothetical protein PF 98.5 1.9E-07 6.6E-12 80.1 7.8 50 167-218 20-69 (187)
51 3u61_B DNA polymerase accessor 98.5 7.4E-07 2.5E-11 84.0 11.7 177 167-369 24-213 (324)
52 3cf0_A Transitional endoplasmi 98.4 3.6E-06 1.2E-10 78.5 14.8 150 169-340 15-199 (301)
53 1a5t_A Delta prime, HOLB; zinc 98.4 4.4E-06 1.5E-10 79.1 14.6 163 192-370 24-203 (334)
54 1sxj_C Activator 1 40 kDa subu 98.3 4E-06 1.4E-10 79.6 11.4 180 168-368 24-208 (340)
55 3hu3_A Transitional endoplasmi 98.3 2.9E-06 1E-10 84.3 10.1 179 168-371 203-414 (489)
56 3n70_A Transport activator; si 98.2 5.8E-07 2E-11 74.3 3.9 47 170-216 2-48 (145)
57 4b4t_J 26S protease regulatory 98.2 9E-06 3.1E-10 78.0 12.3 171 168-365 147-354 (405)
58 1qvr_A CLPB protein; coiled co 98.2 5.3E-06 1.8E-10 88.5 11.9 50 167-218 168-217 (854)
59 1lv7_A FTSH; alpha/beta domain 98.2 8.8E-06 3E-10 73.9 10.7 178 168-371 11-224 (257)
60 2r62_A Cell division protease 98.1 9.5E-07 3.2E-11 80.9 3.5 153 167-340 9-196 (268)
61 4b4t_H 26S protease regulatory 98.1 4.1E-05 1.4E-09 74.5 14.5 172 167-365 207-415 (467)
62 3pxg_A Negative regulator of g 98.1 7.1E-06 2.4E-10 81.4 9.4 146 167-340 178-338 (468)
63 1ofh_A ATP-dependent HSL prote 98.1 8.2E-06 2.8E-10 76.0 8.9 48 170-217 16-75 (310)
64 2gno_A DNA polymerase III, gam 98.1 7.7E-06 2.6E-10 76.3 8.6 143 176-340 4-152 (305)
65 3ec2_A DNA replication protein 98.1 4.2E-06 1.4E-10 71.7 6.0 26 192-217 38-63 (180)
66 1r6b_X CLPA protein; AAA+, N-t 98.1 1.3E-05 4.5E-10 84.4 10.8 150 167-340 184-362 (758)
67 4b4t_K 26S protease regulatory 98.1 1.2E-05 4.1E-10 78.1 9.5 169 169-364 172-378 (428)
68 4b4t_L 26S protease subunit RP 98.1 3.7E-05 1.3E-09 74.8 12.9 171 168-365 180-387 (437)
69 4b4t_M 26S protease regulatory 98.0 2.6E-05 9E-10 75.8 11.4 170 168-364 180-386 (434)
70 4fcw_A Chaperone protein CLPB; 98.0 1E-05 3.4E-10 75.6 8.3 48 171-218 19-73 (311)
71 2ce7_A Cell division protein F 98.0 3.4E-05 1.2E-09 76.1 11.8 172 169-365 16-221 (476)
72 2c9o_A RUVB-like 1; hexameric 98.0 5.5E-05 1.9E-09 74.7 12.4 50 168-217 36-88 (456)
73 3pxi_A Negative regulator of g 98.0 1.8E-05 6.3E-10 83.3 9.4 146 167-340 178-338 (758)
74 2kjq_A DNAA-related protein; s 97.9 6.4E-06 2.2E-10 68.3 3.4 37 191-227 35-71 (149)
75 2bjv_A PSP operon transcriptio 97.9 1.2E-05 4E-10 73.4 5.2 49 169-217 6-54 (265)
76 3t15_A Ribulose bisphosphate c 97.9 6.1E-05 2.1E-09 69.8 10.0 29 191-219 35-63 (293)
77 1in4_A RUVB, holliday junction 97.8 0.00012 4.1E-09 69.2 12.2 172 169-371 25-222 (334)
78 4b4t_I 26S protease regulatory 97.8 0.00014 5E-09 70.0 12.7 169 169-364 182-387 (437)
79 2w58_A DNAI, primosome compone 97.8 2.5E-05 8.5E-10 68.0 6.6 35 193-227 55-89 (202)
80 3cf2_A TER ATPase, transitiona 97.8 2.8E-05 9.5E-10 81.3 7.1 171 168-365 203-407 (806)
81 1ojl_A Transcriptional regulat 97.8 1.5E-05 5.1E-10 74.4 4.2 48 169-216 2-49 (304)
82 3co5_A Putative two-component 97.7 2.2E-06 7.5E-11 70.6 -1.9 48 169-216 4-51 (143)
83 1ypw_A Transitional endoplasmi 97.6 0.00018 6.2E-09 76.0 10.9 152 167-340 202-385 (806)
84 3pxi_A Negative regulator of g 97.6 0.00011 3.8E-09 77.3 8.0 147 169-340 491-675 (758)
85 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00073 2.5E-08 67.0 13.4 145 193-365 65-236 (499)
86 2x8a_A Nuclear valosin-contain 97.6 0.0016 5.6E-08 59.5 14.9 124 195-340 47-191 (274)
87 2cvh_A DNA repair and recombin 97.6 6.8E-05 2.3E-09 66.0 5.1 35 190-227 18-52 (220)
88 1ixz_A ATP-dependent metallopr 97.5 0.00086 2.9E-08 60.4 11.7 146 195-365 52-221 (254)
89 2r44_A Uncharacterized protein 97.5 0.00047 1.6E-08 64.8 10.1 47 169-219 27-73 (331)
90 1iy2_A ATP-dependent metallopr 97.4 0.0011 3.8E-08 60.6 11.7 146 195-365 76-245 (278)
91 3m6a_A ATP-dependent protease 97.4 0.00022 7.4E-09 72.0 7.3 29 191-219 107-135 (543)
92 1um8_A ATP-dependent CLP prote 97.3 0.00032 1.1E-08 67.3 6.9 26 192-217 72-97 (376)
93 1g5t_A COB(I)alamin adenosyltr 97.2 0.0027 9.2E-08 54.5 10.9 112 193-310 29-163 (196)
94 1ye8_A Protein THEP1, hypothet 97.2 0.0035 1.2E-07 53.2 11.4 24 194-217 2-25 (178)
95 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00016 5.6E-09 67.0 3.1 25 191-215 122-146 (331)
96 2eyu_A Twitching motility prot 97.2 0.00044 1.5E-08 62.8 6.0 111 191-312 24-135 (261)
97 3jvv_A Twitching mobility prot 97.2 0.00012 4.2E-09 69.5 2.2 110 192-313 123-234 (356)
98 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00022 7.5E-09 75.1 4.0 48 169-216 458-512 (758)
99 1qvr_A CLPB protein; coiled co 97.0 0.00087 3E-08 71.4 7.2 49 170-218 559-614 (854)
100 2qgz_A Helicase loader, putati 97.0 0.0015 5E-08 60.9 7.7 36 192-227 152-188 (308)
101 1jr3_D DNA polymerase III, del 97.0 0.02 6.9E-07 53.8 15.4 155 191-370 17-183 (343)
102 3hr8_A Protein RECA; alpha and 96.9 0.0032 1.1E-07 59.6 9.4 49 179-227 47-96 (356)
103 2pjz_A Hypothetical protein ST 96.9 0.0033 1.1E-07 57.0 8.9 25 192-216 30-54 (263)
104 2cbz_A Multidrug resistance-as 96.9 0.003 1E-07 56.3 8.5 26 191-216 30-55 (237)
105 2pze_A Cystic fibrosis transme 96.8 0.0033 1.1E-07 55.7 8.2 61 262-324 138-202 (229)
106 2ewv_A Twitching motility prot 96.7 0.00072 2.5E-08 64.7 3.0 109 191-311 135-245 (372)
107 1qhx_A CPT, protein (chloramph 96.7 0.00087 3E-08 56.7 3.0 25 193-217 4-28 (178)
108 2nq2_C Hypothetical ABC transp 96.6 0.0015 5.1E-08 58.9 4.7 26 191-216 30-55 (253)
109 2b8t_A Thymidine kinase; deoxy 96.6 0.0006 2.1E-08 60.2 1.9 36 191-226 11-46 (223)
110 3io5_A Recombination and repai 96.6 0.0031 1.1E-07 58.3 6.6 34 194-227 30-65 (333)
111 3cf2_A TER ATPase, transitiona 96.6 0.0026 8.8E-08 66.6 6.5 149 169-340 477-661 (806)
112 1ypw_A Transitional endoplasmi 96.5 0.00054 1.8E-08 72.4 1.1 150 168-340 476-661 (806)
113 2bbs_A Cystic fibrosis transme 96.5 0.015 5.2E-07 53.4 10.6 61 262-324 167-231 (290)
114 3gd7_A Fusion complex of cysti 96.5 0.004 1.4E-07 59.7 6.8 26 191-216 46-71 (390)
115 1v5w_A DMC1, meiotic recombina 96.5 0.0045 1.5E-07 58.5 7.1 47 181-227 111-163 (343)
116 3kb2_A SPBC2 prophage-derived 96.5 0.0014 4.9E-08 54.8 3.2 25 193-217 2-26 (173)
117 1vma_A Cell division protein F 96.5 0.013 4.4E-07 54.3 9.8 29 191-219 103-131 (306)
118 3uie_A Adenylyl-sulfate kinase 96.5 0.0031 1E-07 54.5 5.3 27 191-217 24-50 (200)
119 3c8u_A Fructokinase; YP_612366 96.4 0.0013 4.3E-08 57.4 2.8 28 191-218 21-48 (208)
120 3vaa_A Shikimate kinase, SK; s 96.4 0.0016 5.6E-08 56.3 3.5 26 191-216 24-49 (199)
121 3bh0_A DNAB-like replicative h 96.4 0.0077 2.6E-07 56.1 8.1 50 177-227 54-103 (315)
122 1xp8_A RECA protein, recombina 96.4 0.012 4.2E-07 55.9 9.4 50 178-227 59-109 (366)
123 2z43_A DNA repair and recombin 96.4 0.0022 7.5E-08 60.1 4.1 47 181-227 96-148 (324)
124 1zp6_A Hypothetical protein AT 96.3 0.0019 6.5E-08 55.2 3.2 25 191-215 8-32 (191)
125 1knq_A Gluconate kinase; ALFA/ 96.3 0.0028 9.6E-08 53.3 4.2 26 191-216 7-32 (175)
126 3trf_A Shikimate kinase, SK; a 96.3 0.002 6.8E-08 54.8 3.2 25 192-216 5-29 (185)
127 3hws_A ATP-dependent CLP prote 96.3 0.0012 4.1E-08 63.0 1.8 26 192-217 51-76 (363)
128 3sr0_A Adenylate kinase; phosp 96.3 0.005 1.7E-07 53.6 5.6 23 194-216 2-24 (206)
129 4eun_A Thermoresistant glucoki 96.3 0.0034 1.2E-07 54.3 4.4 26 191-216 28-53 (200)
130 3a00_A Guanylate kinase, GMP k 96.2 0.0022 7.5E-08 54.8 3.1 28 193-220 2-29 (186)
131 1rz3_A Hypothetical protein rb 96.2 0.0024 8.1E-08 55.4 3.3 28 191-218 21-48 (201)
132 1nks_A Adenylate kinase; therm 96.2 0.0044 1.5E-07 52.8 4.9 26 193-218 2-27 (194)
133 1kag_A SKI, shikimate kinase I 96.2 0.0019 6.7E-08 54.2 2.6 25 193-217 5-29 (173)
134 1ex7_A Guanylate kinase; subst 96.2 0.0016 5.4E-08 55.7 2.0 28 193-220 2-29 (186)
135 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0039 1.3E-07 58.6 4.8 102 192-311 171-276 (330)
136 2rhm_A Putative kinase; P-loop 96.2 0.0033 1.1E-07 53.7 4.0 25 192-216 5-29 (193)
137 2dr3_A UPF0273 protein PH0284; 96.2 0.0027 9.1E-08 56.6 3.5 45 183-227 14-58 (247)
138 1ly1_A Polynucleotide kinase; 96.2 0.0027 9.2E-08 53.6 3.3 22 193-214 3-24 (181)
139 1zuh_A Shikimate kinase; alpha 96.2 0.0028 9.5E-08 53.0 3.3 26 192-217 7-32 (168)
140 2yvu_A Probable adenylyl-sulfa 96.2 0.0055 1.9E-07 52.1 5.3 28 191-218 12-39 (186)
141 2ehv_A Hypothetical protein PH 96.2 0.0034 1.2E-07 56.0 4.1 37 191-227 29-66 (251)
142 3lw7_A Adenylate kinase relate 96.2 0.0025 8.5E-08 53.3 3.0 20 193-212 2-21 (179)
143 1kgd_A CASK, peripheral plasma 96.2 0.0027 9.4E-08 53.9 3.2 26 192-217 5-30 (180)
144 4a1f_A DNAB helicase, replicat 96.1 0.01 3.5E-07 55.7 7.3 54 173-227 28-81 (338)
145 3tr0_A Guanylate kinase, GMP k 96.1 0.003 1E-07 54.6 3.3 25 192-216 7-31 (205)
146 3tau_A Guanylate kinase, GMP k 96.1 0.0029 9.9E-08 55.1 3.3 28 191-218 7-34 (208)
147 3t61_A Gluconokinase; PSI-biol 96.1 0.0024 8.1E-08 55.3 2.6 25 192-216 18-42 (202)
148 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0032 1.1E-07 55.4 3.5 37 191-227 22-58 (235)
149 1kht_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 53.6 3.3 26 193-218 4-29 (192)
150 4a74_A DNA repair and recombin 96.0 0.0034 1.2E-07 55.2 3.4 38 190-227 23-66 (231)
151 3iij_A Coilin-interacting nucl 96.0 0.0029 9.8E-08 53.6 2.7 25 192-216 11-35 (180)
152 3asz_A Uridine kinase; cytidin 96.0 0.0042 1.4E-07 54.0 3.8 27 191-217 5-31 (211)
153 2i1q_A DNA repair and recombin 96.0 0.0044 1.5E-07 58.0 4.0 36 181-216 87-122 (322)
154 1xjc_A MOBB protein homolog; s 96.0 0.0068 2.3E-07 50.8 4.8 29 191-219 3-31 (169)
155 2ze6_A Isopentenyl transferase 96.0 0.004 1.4E-07 56.1 3.5 24 193-216 2-25 (253)
156 1tf7_A KAIC; homohexamer, hexa 96.0 0.0046 1.6E-07 62.0 4.3 38 190-227 279-316 (525)
157 2zts_A Putative uncharacterize 95.9 0.0061 2.1E-07 54.3 4.7 47 181-227 19-66 (251)
158 1via_A Shikimate kinase; struc 95.9 0.0032 1.1E-07 53.1 2.6 24 194-217 6-29 (175)
159 1y63_A LMAJ004144AAA protein; 95.9 0.0049 1.7E-07 52.5 3.8 24 192-215 10-33 (184)
160 2zr9_A Protein RECA, recombina 95.9 0.0097 3.3E-07 56.2 6.2 48 180-227 48-96 (349)
161 1sky_E F1-ATPase, F1-ATP synth 95.9 0.029 9.8E-07 54.8 9.5 33 192-224 151-183 (473)
162 2bdt_A BH3686; alpha-beta prot 95.9 0.0042 1.4E-07 53.0 3.3 22 193-214 3-24 (189)
163 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 52.7 3.6 25 192-216 3-27 (196)
164 2qor_A Guanylate kinase; phosp 95.9 0.0033 1.1E-07 54.5 2.6 27 191-217 11-37 (204)
165 1uj2_A Uridine-cytidine kinase 95.9 0.0046 1.6E-07 55.6 3.6 27 191-217 21-47 (252)
166 3cm0_A Adenylate kinase; ATP-b 95.9 0.005 1.7E-07 52.3 3.7 25 192-216 4-28 (186)
167 1n0w_A DNA repair protein RAD5 95.9 0.0041 1.4E-07 55.2 3.2 47 181-227 13-65 (243)
168 2j41_A Guanylate kinase; GMP, 95.9 0.0044 1.5E-07 53.5 3.3 25 192-216 6-30 (207)
169 1odf_A YGR205W, hypothetical 3 95.9 0.0038 1.3E-07 57.5 3.0 28 191-218 30-57 (290)
170 2c95_A Adenylate kinase 1; tra 95.9 0.0047 1.6E-07 52.9 3.4 25 192-216 9-33 (196)
171 2vli_A Antibiotic resistance p 95.9 0.0034 1.2E-07 53.1 2.5 26 192-217 5-30 (183)
172 2iyv_A Shikimate kinase, SK; t 95.8 0.0035 1.2E-07 53.2 2.5 24 193-216 3-26 (184)
173 2jaq_A Deoxyguanosine kinase; 95.8 0.0047 1.6E-07 53.2 3.3 24 194-217 2-25 (205)
174 3ozx_A RNAse L inhibitor; ATP 95.8 0.012 4.3E-07 58.9 6.8 25 191-215 24-48 (538)
175 1nn5_A Similar to deoxythymidy 95.8 0.0083 2.8E-07 52.1 4.9 28 192-219 9-36 (215)
176 1ukz_A Uridylate kinase; trans 95.8 0.0059 2E-07 52.7 3.9 26 191-216 14-39 (203)
177 2bwj_A Adenylate kinase 5; pho 95.8 0.0047 1.6E-07 53.0 3.2 26 192-217 12-37 (199)
178 2plr_A DTMP kinase, probable t 95.8 0.0057 2E-07 53.0 3.7 28 192-219 4-31 (213)
179 4gp7_A Metallophosphoesterase; 95.8 0.0043 1.5E-07 52.2 2.7 22 191-212 8-29 (171)
180 1e6c_A Shikimate kinase; phosp 95.8 0.0043 1.5E-07 51.9 2.7 24 193-216 3-26 (173)
181 3ney_A 55 kDa erythrocyte memb 95.8 0.0051 1.8E-07 53.0 3.2 27 191-217 18-44 (197)
182 1znw_A Guanylate kinase, GMP k 95.7 0.0052 1.8E-07 53.4 3.2 27 191-217 19-45 (207)
183 2qt1_A Nicotinamide riboside k 95.7 0.0063 2.1E-07 52.8 3.8 26 191-216 20-45 (207)
184 2jeo_A Uridine-cytidine kinase 95.7 0.0064 2.2E-07 54.4 3.9 27 190-216 23-49 (245)
185 1htw_A HI0065; nucleotide-bind 95.7 0.0062 2.1E-07 50.6 3.5 26 191-216 32-57 (158)
186 1u94_A RECA protein, recombina 95.7 0.013 4.5E-07 55.5 6.2 48 180-227 50-98 (356)
187 3ice_A Transcription terminati 95.7 0.034 1.2E-06 52.8 8.9 30 191-220 173-202 (422)
188 3j16_B RLI1P; ribosome recycli 95.7 0.034 1.2E-06 56.5 9.6 25 191-215 102-126 (608)
189 1aky_A Adenylate kinase; ATP:A 95.7 0.0058 2E-07 53.6 3.5 25 192-216 4-28 (220)
190 1qf9_A UMP/CMP kinase, protein 95.7 0.0073 2.5E-07 51.4 4.1 25 192-216 6-30 (194)
191 2bbw_A Adenylate kinase 4, AK4 95.7 0.0055 1.9E-07 54.8 3.3 25 192-216 27-51 (246)
192 1cke_A CK, MSSA, protein (cyti 95.7 0.0056 1.9E-07 53.8 3.4 24 193-216 6-29 (227)
193 1rj9_A FTSY, signal recognitio 95.7 0.01 3.5E-07 54.9 5.1 36 191-227 101-136 (304)
194 2cdn_A Adenylate kinase; phosp 95.7 0.0073 2.5E-07 52.1 3.9 25 192-216 20-44 (201)
195 1tue_A Replication protein E1; 95.7 0.0041 1.4E-07 53.7 2.2 40 178-218 45-84 (212)
196 1lvg_A Guanylate kinase, GMP k 95.7 0.0049 1.7E-07 53.2 2.7 26 192-217 4-29 (198)
197 2pez_A Bifunctional 3'-phospho 95.7 0.0072 2.5E-07 51.0 3.7 28 191-218 4-31 (179)
198 3b5x_A Lipid A export ATP-bind 95.7 0.023 8E-07 57.6 8.1 27 190-216 367-393 (582)
199 2pt5_A Shikimate kinase, SK; a 95.6 0.0064 2.2E-07 50.6 3.3 24 194-217 2-25 (168)
200 2wwf_A Thymidilate kinase, put 95.6 0.0076 2.6E-07 52.3 3.9 27 192-218 10-36 (212)
201 2if2_A Dephospho-COA kinase; a 95.6 0.0055 1.9E-07 52.9 3.0 22 193-214 2-23 (204)
202 2z0h_A DTMP kinase, thymidylat 95.6 0.018 6.1E-07 49.2 6.2 25 194-218 2-26 (197)
203 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0067 2.3E-07 54.8 3.6 26 192-217 4-29 (260)
204 3b9q_A Chloroplast SRP recepto 95.6 0.012 4.1E-07 54.4 5.4 36 191-227 99-134 (302)
205 1uf9_A TT1252 protein; P-loop, 95.6 0.0068 2.3E-07 52.1 3.5 25 191-215 7-31 (203)
206 3bk7_A ABC transporter ATP-bin 95.6 0.034 1.1E-06 56.6 9.0 132 191-324 381-545 (607)
207 2pbr_A DTMP kinase, thymidylat 95.6 0.0067 2.3E-07 51.7 3.3 25 194-218 2-26 (195)
208 3umf_A Adenylate kinase; rossm 95.6 0.0092 3.1E-07 52.3 4.1 27 190-216 27-53 (217)
209 3aez_A Pantothenate kinase; tr 95.6 0.0079 2.7E-07 55.9 3.9 29 190-218 88-116 (312)
210 2q6t_A DNAB replication FORK h 95.5 0.029 9.9E-07 54.9 8.1 69 173-248 182-251 (444)
211 1gvn_B Zeta; postsegregational 95.5 0.0076 2.6E-07 55.4 3.6 26 191-216 32-57 (287)
212 1s96_A Guanylate kinase, GMP k 95.5 0.0069 2.4E-07 53.3 3.2 27 191-217 15-41 (219)
213 1z6g_A Guanylate kinase; struc 95.5 0.0058 2E-07 53.7 2.7 26 191-216 22-47 (218)
214 1yqt_A RNAse L inhibitor; ATP- 95.5 0.029 1E-06 56.2 8.1 132 191-324 311-475 (538)
215 1g8p_A Magnesium-chelatase 38 95.5 0.0025 8.5E-08 60.1 0.2 49 167-217 22-70 (350)
216 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0022 7.5E-08 63.7 -0.3 45 169-217 22-66 (500)
217 4e22_A Cytidylate kinase; P-lo 95.5 0.0079 2.7E-07 54.1 3.5 26 191-216 26-51 (252)
218 3tlx_A Adenylate kinase 2; str 95.5 0.0034 1.2E-07 56.2 1.0 26 191-216 28-53 (243)
219 1jjv_A Dephospho-COA kinase; P 95.5 0.0072 2.5E-07 52.3 3.1 22 193-214 3-24 (206)
220 3fb4_A Adenylate kinase; psych 95.5 0.0079 2.7E-07 52.4 3.4 23 194-216 2-24 (216)
221 1cr0_A DNA primase/helicase; R 95.5 0.013 4.5E-07 53.9 5.0 38 190-227 33-71 (296)
222 3kl4_A SRP54, signal recogniti 95.5 0.034 1.2E-06 53.9 8.0 29 191-219 96-124 (433)
223 2p5t_B PEZT; postsegregational 95.4 0.0088 3E-07 53.8 3.7 27 191-217 31-57 (253)
224 1gtv_A TMK, thymidylate kinase 95.4 0.0059 2E-07 53.1 2.4 25 194-218 2-26 (214)
225 1zd8_A GTP:AMP phosphotransfer 95.4 0.0074 2.5E-07 53.2 3.0 25 192-216 7-31 (227)
226 2r6a_A DNAB helicase, replicat 95.4 0.03 1E-06 54.9 7.6 50 177-227 189-239 (454)
227 3e70_C DPA, signal recognition 95.4 0.017 5.6E-07 54.1 5.4 30 190-219 127-156 (328)
228 1m7g_A Adenylylsulfate kinase; 95.4 0.01 3.6E-07 51.6 3.8 27 191-217 24-50 (211)
229 2og2_A Putative signal recogni 95.4 0.016 5.6E-07 54.8 5.4 35 191-226 156-190 (359)
230 2grj_A Dephospho-COA kinase; T 95.4 0.009 3.1E-07 51.3 3.3 26 191-216 11-36 (192)
231 1zak_A Adenylate kinase; ATP:A 95.4 0.0077 2.6E-07 52.9 2.9 26 192-217 5-30 (222)
232 3zvl_A Bifunctional polynucleo 95.4 0.028 9.5E-07 54.5 7.1 26 191-216 257-282 (416)
233 1zu4_A FTSY; GTPase, signal re 95.3 0.019 6.5E-07 53.5 5.7 37 190-226 103-139 (320)
234 3dl0_A Adenylate kinase; phosp 95.3 0.0086 2.9E-07 52.2 3.1 23 194-216 2-24 (216)
235 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0032 1.1E-07 59.2 0.3 30 191-220 23-52 (359)
236 3bgw_A DNAB-like replicative h 95.3 0.024 8.2E-07 55.4 6.5 51 176-227 182-232 (444)
237 3dm5_A SRP54, signal recogniti 95.3 0.05 1.7E-06 52.8 8.6 29 191-219 99-127 (443)
238 3fwy_A Light-independent proto 95.3 0.017 5.8E-07 53.7 5.2 37 191-227 47-83 (314)
239 3thx_A DNA mismatch repair pro 95.3 0.023 8E-07 60.5 6.8 23 191-213 661-683 (934)
240 2v54_A DTMP kinase, thymidylat 95.3 0.0093 3.2E-07 51.4 3.1 25 192-216 4-28 (204)
241 2xxa_A Signal recognition part 95.3 0.15 5.2E-06 49.5 11.9 29 191-219 99-127 (433)
242 2f1r_A Molybdopterin-guanine d 95.3 0.0098 3.4E-07 50.1 3.1 27 193-219 3-29 (171)
243 2i3b_A HCR-ntpase, human cance 95.2 0.0086 2.9E-07 51.3 2.7 25 193-217 2-26 (189)
244 3qf4_B Uncharacterized ABC tra 95.2 0.014 4.8E-07 59.5 4.7 27 190-216 379-405 (598)
245 3nwj_A ATSK2; P loop, shikimat 95.2 0.0086 2.9E-07 53.8 2.7 26 192-217 48-73 (250)
246 3be4_A Adenylate kinase; malar 95.2 0.0091 3.1E-07 52.3 2.8 24 193-216 6-29 (217)
247 3lnc_A Guanylate kinase, GMP k 95.2 0.0071 2.4E-07 53.5 2.1 26 191-216 26-52 (231)
248 3e1s_A Exodeoxyribonuclease V, 95.2 0.079 2.7E-06 53.5 10.0 28 192-219 204-231 (574)
249 2yhs_A FTSY, cell division pro 95.1 0.021 7.3E-07 56.1 5.5 37 190-227 291-327 (503)
250 3tif_A Uncharacterized ABC tra 95.1 0.0093 3.2E-07 53.0 2.7 27 190-216 29-55 (235)
251 2px0_A Flagellar biosynthesis 95.1 0.019 6.6E-07 52.8 4.9 28 191-218 104-131 (296)
252 1sq5_A Pantothenate kinase; P- 95.1 0.014 4.6E-07 54.2 3.8 27 191-217 79-105 (308)
253 3tqc_A Pantothenate kinase; bi 95.1 0.016 5.4E-07 54.0 4.2 29 190-218 90-118 (321)
254 3ake_A Cytidylate kinase; CMP 95.1 0.013 4.4E-07 50.6 3.4 24 194-217 4-27 (208)
255 3qf4_A ABC transporter, ATP-bi 95.0 0.013 4.6E-07 59.5 3.9 25 191-215 368-392 (587)
256 2onk_A Molybdate/tungstate ABC 95.0 0.011 3.9E-07 52.6 3.0 26 190-216 23-48 (240)
257 1nlf_A Regulatory protein REPA 95.0 0.018 6E-07 52.5 4.4 28 191-218 29-56 (279)
258 1pzn_A RAD51, DNA repair and r 95.0 0.012 4E-07 55.7 3.1 34 183-216 122-155 (349)
259 1np6_A Molybdopterin-guanine d 95.0 0.024 8E-07 47.8 4.7 27 192-218 6-32 (174)
260 2pcj_A ABC transporter, lipopr 94.9 0.0088 3E-07 52.8 2.0 26 191-216 29-54 (224)
261 2xb4_A Adenylate kinase; ATP-b 94.9 0.014 4.9E-07 51.3 3.3 23 194-216 2-24 (223)
262 1b0u_A Histidine permease; ABC 94.9 0.011 3.8E-07 53.4 2.6 27 190-216 30-56 (262)
263 1e4v_A Adenylate kinase; trans 94.9 0.014 4.8E-07 50.9 3.2 23 194-216 2-24 (214)
264 1vht_A Dephospho-COA kinase; s 94.9 0.016 5.5E-07 50.6 3.6 23 192-214 4-26 (218)
265 1ak2_A Adenylate kinase isoenz 94.9 0.016 5.6E-07 51.2 3.6 26 192-217 16-41 (233)
266 2qi9_C Vitamin B12 import ATP- 94.9 0.011 3.8E-07 53.0 2.5 28 191-218 25-52 (249)
267 4a82_A Cystic fibrosis transme 94.8 0.011 3.6E-07 60.1 2.5 26 190-215 365-390 (578)
268 1a7j_A Phosphoribulokinase; tr 94.8 0.01 3.5E-07 54.6 2.2 27 191-217 4-30 (290)
269 2olj_A Amino acid ABC transpor 94.8 0.012 4.2E-07 53.2 2.6 27 190-216 48-74 (263)
270 2zu0_C Probable ATP-dependent 94.8 0.015 5E-07 52.8 3.2 61 262-324 172-238 (267)
271 3r20_A Cytidylate kinase; stru 94.8 0.016 5.3E-07 51.4 3.2 25 192-216 9-33 (233)
272 3d3q_A TRNA delta(2)-isopenten 94.8 0.016 5.5E-07 54.2 3.4 25 193-217 8-32 (340)
273 3thx_B DNA mismatch repair pro 94.8 0.053 1.8E-06 57.6 7.8 25 190-214 671-695 (918)
274 2f6r_A COA synthase, bifunctio 94.8 0.016 5.5E-07 53.0 3.4 24 191-214 74-97 (281)
275 1eiw_A Hypothetical protein MT 94.7 0.014 4.7E-07 45.1 2.3 54 9-81 2-55 (111)
276 1mv5_A LMRA, multidrug resista 94.7 0.015 5E-07 52.0 2.9 26 191-216 27-52 (243)
277 1ls1_A Signal recognition part 94.7 0.031 1.1E-06 51.4 5.2 29 191-219 97-125 (295)
278 3crm_A TRNA delta(2)-isopenten 94.7 0.016 5.6E-07 53.8 3.3 24 193-216 6-29 (323)
279 1q3t_A Cytidylate kinase; nucl 94.7 0.019 6.6E-07 50.8 3.7 27 190-216 14-40 (236)
280 3b85_A Phosphate starvation-in 94.7 0.012 4.2E-07 51.2 2.3 24 192-215 22-45 (208)
281 1vpl_A ABC transporter, ATP-bi 94.7 0.014 4.6E-07 52.7 2.6 27 190-216 39-65 (256)
282 1q57_A DNA primase/helicase; d 94.7 0.06 2.1E-06 53.5 7.6 40 188-227 238-278 (503)
283 2r8r_A Sensor protein; KDPD, P 94.7 0.028 9.7E-07 49.3 4.5 33 194-226 8-40 (228)
284 2d2e_A SUFC protein; ABC-ATPas 94.7 0.016 5.4E-07 52.1 3.0 25 191-215 28-52 (250)
285 3p32_A Probable GTPase RV1496/ 94.7 0.023 7.9E-07 53.8 4.3 29 190-218 77-105 (355)
286 4eaq_A DTMP kinase, thymidylat 94.7 0.043 1.5E-06 48.5 5.8 28 191-218 25-52 (229)
287 3gfo_A Cobalt import ATP-bindi 94.7 0.013 4.5E-07 53.4 2.4 26 191-216 33-58 (275)
288 3cmu_A Protein RECA, recombina 94.7 0.014 4.8E-07 66.5 3.1 47 181-227 1415-1462(2050)
289 1ji0_A ABC transporter; ATP bi 94.6 0.014 4.7E-07 52.1 2.5 25 191-215 31-55 (240)
290 1g6h_A High-affinity branched- 94.6 0.012 4.1E-07 53.1 2.1 26 191-216 32-57 (257)
291 4g1u_C Hemin import ATP-bindin 94.6 0.014 4.8E-07 52.9 2.5 26 191-216 36-61 (266)
292 2orw_A Thymidine kinase; TMTK, 94.6 0.034 1.1E-06 47.3 4.7 26 193-218 4-29 (184)
293 1yrb_A ATP(GTP)binding protein 94.6 0.038 1.3E-06 49.5 5.4 27 191-217 13-39 (262)
294 2v3c_C SRP54, signal recogniti 94.6 0.15 5E-06 49.6 9.8 29 191-219 98-126 (432)
295 2ghi_A Transport protein; mult 94.6 0.015 5.3E-07 52.5 2.7 26 191-216 45-70 (260)
296 2j9r_A Thymidine kinase; TK1, 94.6 0.044 1.5E-06 47.6 5.4 109 191-311 27-139 (214)
297 1sgw_A Putative ABC transporte 94.6 0.012 4.2E-07 51.4 1.9 26 191-216 34-59 (214)
298 2ixe_A Antigen peptide transpo 94.5 0.016 5.4E-07 52.7 2.7 60 262-324 164-229 (271)
299 1g41_A Heat shock protein HSLU 94.5 0.012 4.1E-07 57.2 1.9 28 192-219 50-77 (444)
300 2yz2_A Putative ABC transporte 94.5 0.016 5.5E-07 52.5 2.7 26 191-216 32-57 (266)
301 3a8t_A Adenylate isopentenyltr 94.5 0.015 5.3E-07 54.2 2.6 26 192-217 40-65 (339)
302 4edh_A DTMP kinase, thymidylat 94.5 0.071 2.4E-06 46.4 6.7 28 192-219 6-33 (213)
303 3foz_A TRNA delta(2)-isopenten 94.5 0.024 8.3E-07 52.2 3.8 26 191-216 9-34 (316)
304 2v9p_A Replication protein E1; 94.5 0.02 7E-07 52.8 3.3 29 188-216 122-150 (305)
305 2ff7_A Alpha-hemolysin translo 94.5 0.016 5.5E-07 51.9 2.5 26 191-216 34-59 (247)
306 1u0j_A DNA replication protein 94.5 0.019 6.5E-07 51.7 3.0 36 181-216 93-128 (267)
307 2ck3_D ATP synthase subunit be 94.5 0.16 5.5E-06 49.5 9.7 54 191-247 152-206 (482)
308 3end_A Light-independent proto 94.5 0.038 1.3E-06 51.0 5.2 37 191-227 40-76 (307)
309 1ltq_A Polynucleotide kinase; 94.5 0.022 7.4E-07 52.4 3.5 23 193-215 3-25 (301)
310 2wsm_A Hydrogenase expression/ 94.5 0.033 1.1E-06 48.4 4.5 29 191-219 29-57 (221)
311 1wb9_A DNA mismatch repair pro 94.4 0.044 1.5E-06 57.5 6.1 26 190-215 605-630 (800)
312 3exa_A TRNA delta(2)-isopenten 94.4 0.02 6.8E-07 52.9 3.1 25 192-216 3-27 (322)
313 2hf9_A Probable hydrogenase ni 94.4 0.033 1.1E-06 48.6 4.5 28 192-219 38-65 (226)
314 2qmh_A HPR kinase/phosphorylas 94.4 0.018 6.2E-07 49.4 2.6 25 192-216 34-58 (205)
315 3upu_A ATP-dependent DNA helic 94.4 0.092 3.2E-06 51.5 7.9 27 194-220 47-73 (459)
316 1cp2_A CP2, nitrogenase iron p 94.3 0.041 1.4E-06 49.6 5.0 35 193-227 2-36 (269)
317 1j8m_F SRP54, signal recogniti 94.3 0.034 1.2E-06 51.2 4.4 36 192-227 98-133 (297)
318 2ihy_A ABC transporter, ATP-bi 94.3 0.018 6.2E-07 52.6 2.5 26 191-216 46-71 (279)
319 1oix_A RAS-related protein RAB 94.3 0.022 7.7E-07 48.5 3.0 25 192-216 29-53 (191)
320 3k1j_A LON protease, ATP-depen 94.3 0.014 4.8E-07 59.6 1.8 48 168-219 40-87 (604)
321 2afh_E Nitrogenase iron protei 94.2 0.044 1.5E-06 50.1 5.0 36 192-227 2-37 (289)
322 3zq6_A Putative arsenical pump 94.2 0.069 2.4E-06 49.8 6.4 35 192-226 14-48 (324)
323 2f9l_A RAB11B, member RAS onco 94.1 0.024 8.2E-07 48.6 2.9 23 193-215 6-28 (199)
324 3cmw_A Protein RECA, recombina 94.1 0.049 1.7E-06 61.3 5.9 53 175-227 714-767 (1706)
325 2iut_A DNA translocase FTSK; n 94.1 0.53 1.8E-05 47.1 12.7 63 273-337 344-420 (574)
326 3lda_A DNA repair protein RAD5 94.1 0.014 4.8E-07 56.2 1.3 49 179-227 165-219 (400)
327 3fvq_A Fe(3+) IONS import ATP- 94.0 0.026 8.9E-07 53.3 3.0 26 191-216 29-54 (359)
328 1svm_A Large T antigen; AAA+ f 94.0 0.029 9.8E-07 53.5 3.3 29 188-216 165-193 (377)
329 3nh6_A ATP-binding cassette SU 94.0 0.025 8.4E-07 52.3 2.8 26 190-215 78-103 (306)
330 2qm8_A GTPase/ATPase; G protei 94.0 0.042 1.4E-06 51.6 4.4 28 191-218 54-81 (337)
331 1fx0_B ATP synthase beta chain 94.0 0.062 2.1E-06 52.6 5.6 54 191-247 164-218 (498)
332 3v9p_A DTMP kinase, thymidylat 94.0 0.076 2.6E-06 46.7 5.8 28 192-219 25-52 (227)
333 3lv8_A DTMP kinase, thymidylat 93.9 0.083 2.8E-06 46.8 6.0 36 192-227 27-63 (236)
334 3ld9_A DTMP kinase, thymidylat 93.9 0.092 3.1E-06 46.1 6.2 28 191-218 20-47 (223)
335 3d31_A Sulfate/molybdate ABC t 93.9 0.03 1E-06 52.8 3.2 26 191-216 25-50 (348)
336 3sop_A Neuronal-specific septi 93.9 0.028 9.7E-07 51.0 3.0 23 194-216 4-26 (270)
337 1svi_A GTP-binding protein YSX 93.9 0.045 1.5E-06 46.4 4.1 25 191-215 22-46 (195)
338 1oxx_K GLCV, glucose, ABC tran 93.9 0.028 9.6E-07 53.1 3.0 26 191-216 30-55 (353)
339 2dyk_A GTP-binding protein; GT 93.9 0.035 1.2E-06 45.2 3.3 23 193-215 2-24 (161)
340 2wji_A Ferrous iron transport 93.8 0.034 1.1E-06 46.0 3.1 22 193-214 4-25 (165)
341 3tui_C Methionine import ATP-b 93.8 0.031 1.1E-06 52.9 3.2 53 262-315 171-229 (366)
342 2ocp_A DGK, deoxyguanosine kin 93.8 0.035 1.2E-06 49.3 3.3 26 192-217 2-27 (241)
343 2yyz_A Sugar ABC transporter, 93.8 0.032 1.1E-06 52.7 3.2 26 191-216 28-53 (359)
344 3rlf_A Maltose/maltodextrin im 93.8 0.032 1.1E-06 53.1 3.2 26 191-216 28-53 (381)
345 2zej_A Dardarin, leucine-rich 93.8 0.025 8.5E-07 47.8 2.2 21 194-214 4-24 (184)
346 2o8b_B DNA mismatch repair pro 93.7 0.043 1.5E-06 59.2 4.5 22 192-213 789-810 (1022)
347 2vp4_A Deoxynucleoside kinase; 93.7 0.025 8.5E-07 49.9 2.2 26 190-215 18-43 (230)
348 2p67_A LAO/AO transport system 93.7 0.044 1.5E-06 51.6 4.0 29 190-218 54-82 (341)
349 2it1_A 362AA long hypothetical 93.7 0.034 1.2E-06 52.7 3.2 26 191-216 28-53 (362)
350 4tmk_A Protein (thymidylate ki 93.7 0.11 3.7E-06 45.3 6.2 34 193-226 4-38 (213)
351 3kjh_A CO dehydrogenase/acetyl 93.7 0.073 2.5E-06 47.1 5.3 33 195-227 3-35 (254)
352 3eph_A TRNA isopentenyltransfe 93.6 0.039 1.3E-06 52.8 3.4 25 193-217 3-27 (409)
353 2axn_A 6-phosphofructo-2-kinas 93.6 0.066 2.3E-06 53.4 5.3 29 191-219 34-62 (520)
354 3kta_A Chromosome segregation 93.6 0.034 1.2E-06 46.8 2.8 23 194-216 28-50 (182)
355 1z47_A CYSA, putative ABC-tran 93.6 0.035 1.2E-06 52.4 3.0 26 191-216 40-65 (355)
356 2www_A Methylmalonic aciduria 93.6 0.072 2.5E-06 50.2 5.3 28 191-218 73-100 (349)
357 2ffh_A Protein (FFH); SRP54, s 93.6 0.07 2.4E-06 51.6 5.2 29 191-219 97-125 (425)
358 1v43_A Sugar-binding transport 93.6 0.037 1.3E-06 52.6 3.2 25 191-215 36-60 (372)
359 1nij_A Hypothetical protein YJ 93.5 0.035 1.2E-06 51.7 3.0 26 191-216 3-28 (318)
360 2j37_W Signal recognition part 93.5 0.072 2.5E-06 52.7 5.2 29 191-219 100-128 (504)
361 1lw7_A Transcriptional regulat 93.4 0.047 1.6E-06 51.8 3.8 26 192-217 170-195 (365)
362 3cmw_A Protein RECA, recombina 93.4 0.068 2.3E-06 60.2 5.5 51 177-227 367-418 (1706)
363 3cr8_A Sulfate adenylyltranfer 93.4 0.042 1.4E-06 55.1 3.5 28 191-218 368-395 (552)
364 2ce2_X GTPase HRAS; signaling 93.4 0.039 1.3E-06 45.0 2.7 22 194-215 5-26 (166)
365 1z2a_A RAS-related protein RAB 93.4 0.041 1.4E-06 45.1 2.9 23 193-215 6-28 (168)
366 3gmt_A Adenylate kinase; ssgci 93.3 0.044 1.5E-06 48.3 3.1 24 193-216 9-32 (230)
367 3tqf_A HPR(Ser) kinase; transf 93.3 0.049 1.7E-06 45.5 3.2 24 192-215 16-39 (181)
368 3io3_A DEHA2D07832P; chaperone 93.3 0.11 3.6E-06 49.0 5.9 27 191-217 17-43 (348)
369 4dzz_A Plasmid partitioning pr 93.3 0.082 2.8E-06 45.3 4.8 35 193-227 2-37 (206)
370 1g29_1 MALK, maltose transport 93.3 0.04 1.4E-06 52.4 3.0 26 191-216 28-53 (372)
371 2wjg_A FEOB, ferrous iron tran 93.3 0.039 1.3E-06 46.4 2.7 24 192-215 7-30 (188)
372 1w36_D RECD, exodeoxyribonucle 93.2 0.45 1.5E-05 48.3 10.8 26 192-217 164-189 (608)
373 3cmu_A Protein RECA, recombina 93.1 0.087 3E-06 60.2 5.8 57 171-227 361-418 (2050)
374 4f4c_A Multidrug resistance pr 93.1 0.23 7.8E-06 55.3 9.1 25 191-215 443-467 (1321)
375 2h92_A Cytidylate kinase; ross 93.1 0.043 1.5E-06 47.8 2.7 24 193-216 4-27 (219)
376 3hjn_A DTMP kinase, thymidylat 93.1 0.16 5.3E-06 43.6 6.2 34 194-227 2-35 (197)
377 3con_A GTPase NRAS; structural 93.1 0.047 1.6E-06 46.0 2.9 22 194-215 23-44 (190)
378 1u8z_A RAS-related protein RAL 93.1 0.049 1.7E-06 44.6 2.9 23 193-215 5-27 (168)
379 3fdi_A Uncharacterized protein 93.1 0.052 1.8E-06 46.8 3.1 25 193-217 7-31 (201)
380 3iqw_A Tail-anchored protein t 93.0 0.12 4.2E-06 48.3 5.9 37 191-227 15-51 (334)
381 1kao_A RAP2A; GTP-binding prot 93.0 0.05 1.7E-06 44.5 2.8 22 194-215 5-26 (167)
382 4hlc_A DTMP kinase, thymidylat 93.0 0.092 3.1E-06 45.4 4.6 29 193-221 3-31 (205)
383 1c1y_A RAS-related protein RAP 93.0 0.052 1.8E-06 44.4 2.9 22 194-215 5-26 (167)
384 1z08_A RAS-related protein RAB 92.9 0.051 1.8E-06 44.7 2.8 23 193-215 7-29 (170)
385 2gj8_A MNME, tRNA modification 92.9 0.047 1.6E-06 45.6 2.6 23 193-215 5-27 (172)
386 2ged_A SR-beta, signal recogni 92.9 0.062 2.1E-06 45.4 3.4 24 192-215 48-71 (193)
387 1r8s_A ADP-ribosylation factor 92.9 0.056 1.9E-06 44.2 3.0 21 195-215 3-23 (164)
388 2iwr_A Centaurin gamma 1; ANK 92.9 0.051 1.7E-06 45.3 2.7 23 193-215 8-30 (178)
389 1g8f_A Sulfate adenylyltransfe 92.9 0.037 1.3E-06 54.9 2.0 28 191-218 394-421 (511)
390 3ug7_A Arsenical pump-driving 92.9 0.15 5.2E-06 48.0 6.3 29 191-219 25-53 (349)
391 1m7b_A RND3/RHOE small GTP-bin 92.9 0.051 1.7E-06 45.7 2.7 24 192-215 7-30 (184)
392 2nzj_A GTP-binding protein REM 92.9 0.067 2.3E-06 44.2 3.4 22 193-214 5-26 (175)
393 1bif_A 6-phosphofructo-2-kinas 92.8 0.099 3.4E-06 51.4 5.2 29 192-220 39-67 (469)
394 1ek0_A Protein (GTP-binding pr 92.8 0.055 1.9E-06 44.4 2.9 22 194-215 5-26 (170)
395 1z0j_A RAB-22, RAS-related pro 92.8 0.055 1.9E-06 44.4 2.8 23 193-215 7-29 (170)
396 3q85_A GTP-binding protein REM 92.8 0.052 1.8E-06 44.6 2.7 21 194-214 4-24 (169)
397 3ihw_A Centg3; RAS, centaurin, 92.8 0.054 1.8E-06 45.7 2.8 23 193-215 21-43 (184)
398 2obl_A ESCN; ATPase, hydrolase 92.8 0.055 1.9E-06 51.0 3.1 28 191-218 70-97 (347)
399 1p9r_A General secretion pathw 92.8 0.11 3.6E-06 50.3 5.1 29 191-219 166-194 (418)
400 3fkq_A NTRC-like two-domain pr 92.7 0.12 4.1E-06 49.2 5.4 38 190-227 141-179 (373)
401 2fn4_A P23, RAS-related protei 92.7 0.08 2.7E-06 43.9 3.8 25 191-215 8-32 (181)
402 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.058 2E-06 44.7 2.8 24 192-215 7-30 (177)
403 3vr4_D V-type sodium ATPase su 92.7 0.2 7E-06 48.5 6.9 89 192-282 151-258 (465)
404 1ky3_A GTP-binding protein YPT 92.7 0.059 2E-06 44.8 2.8 24 192-215 8-31 (182)
405 2lkc_A Translation initiation 92.7 0.07 2.4E-06 44.3 3.3 25 191-215 7-31 (178)
406 1nrj_B SR-beta, signal recogni 92.6 0.07 2.4E-06 46.2 3.4 26 191-216 11-36 (218)
407 3q72_A GTP-binding protein RAD 92.6 0.051 1.8E-06 44.5 2.4 21 194-214 4-24 (166)
408 1r2q_A RAS-related protein RAB 92.6 0.061 2.1E-06 44.1 2.9 23 193-215 7-29 (170)
409 1g16_A RAS-related protein SEC 92.6 0.058 2E-06 44.3 2.7 23 193-215 4-26 (170)
410 2erx_A GTP-binding protein DI- 92.6 0.057 2E-06 44.4 2.7 21 194-214 5-25 (172)
411 2cjw_A GTP-binding protein GEM 92.6 0.06 2.1E-06 45.8 2.9 22 193-214 7-28 (192)
412 3c5c_A RAS-like protein 12; GD 92.6 0.062 2.1E-06 45.4 2.8 23 193-215 22-44 (187)
413 1m2o_B GTP-binding protein SAR 92.6 0.059 2E-06 45.7 2.7 23 193-215 24-46 (190)
414 1fzq_A ADP-ribosylation factor 92.5 0.068 2.3E-06 44.9 3.0 25 191-215 15-39 (181)
415 3t1o_A Gliding protein MGLA; G 92.5 0.063 2.1E-06 45.3 2.8 27 192-218 14-40 (198)
416 1pui_A ENGB, probable GTP-bind 92.5 0.04 1.4E-06 47.4 1.5 24 191-214 25-48 (210)
417 1z0f_A RAB14, member RAS oncog 92.5 0.065 2.2E-06 44.4 2.9 24 192-215 15-38 (179)
418 1tq4_A IIGP1, interferon-induc 92.4 0.022 7.6E-07 54.9 -0.1 24 191-214 68-91 (413)
419 1p5z_B DCK, deoxycytidine kina 92.4 0.032 1.1E-06 50.3 0.9 27 191-217 23-49 (263)
420 1upt_A ARL1, ADP-ribosylation 92.4 0.067 2.3E-06 44.0 2.9 24 192-215 7-30 (171)
421 4f4c_A Multidrug resistance pr 92.4 0.074 2.5E-06 59.2 3.9 25 191-215 1104-1128(1321)
422 3bc1_A RAS-related protein RAB 92.4 0.067 2.3E-06 45.0 2.9 24 192-215 11-34 (195)
423 3g5u_A MCG1178, multidrug resi 92.4 0.092 3.2E-06 58.3 4.6 132 190-326 414-599 (1284)
424 2hxs_A RAB-26, RAS-related pro 92.3 0.06 2E-06 44.7 2.4 23 193-215 7-29 (178)
425 1x6v_B Bifunctional 3'-phospho 92.3 0.09 3.1E-06 53.4 4.1 27 191-217 51-77 (630)
426 3kkq_A RAS-related protein M-R 92.3 0.07 2.4E-06 44.6 2.9 24 192-215 18-41 (183)
427 4dsu_A GTPase KRAS, isoform 2B 92.3 0.07 2.4E-06 44.7 2.8 22 194-215 6-27 (189)
428 2oil_A CATX-8, RAS-related pro 92.3 0.07 2.4E-06 45.1 2.9 24 192-215 25-48 (193)
429 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.073 2.5E-06 44.5 2.9 23 193-215 6-28 (186)
430 2a9k_A RAS-related protein RAL 92.2 0.074 2.5E-06 44.4 2.9 24 192-215 18-41 (187)
431 3ea0_A ATPase, para family; al 92.2 0.16 5.5E-06 44.7 5.2 37 191-227 3-41 (245)
432 2cxx_A Probable GTP-binding pr 92.2 0.066 2.2E-06 45.0 2.5 22 194-215 3-24 (190)
433 2y8e_A RAB-protein 6, GH09086P 92.2 0.072 2.5E-06 44.1 2.7 23 193-215 15-37 (179)
434 2bme_A RAB4A, RAS-related prot 92.1 0.072 2.5E-06 44.6 2.7 24 192-215 10-33 (186)
435 3bwd_D RAC-like GTP-binding pr 92.1 0.076 2.6E-06 44.2 2.9 23 193-215 9-31 (182)
436 1m8p_A Sulfate adenylyltransfe 92.1 0.092 3.2E-06 53.0 3.9 28 191-218 395-422 (573)
437 1tf7_A KAIC; homohexamer, hexa 92.1 0.11 3.7E-06 51.9 4.4 37 191-227 38-75 (525)
438 2atv_A RERG, RAS-like estrogen 92.1 0.076 2.6E-06 45.1 2.8 24 192-215 28-51 (196)
439 3cbq_A GTP-binding protein REM 92.1 0.056 1.9E-06 46.1 2.0 22 192-213 23-44 (195)
440 2efe_B Small GTP-binding prote 92.1 0.076 2.6E-06 44.2 2.8 23 193-215 13-35 (181)
441 3t5g_A GTP-binding protein RHE 92.1 0.074 2.5E-06 44.3 2.7 24 192-215 6-29 (181)
442 3dz8_A RAS-related protein RAB 92.1 0.078 2.7E-06 44.8 2.9 23 193-215 24-46 (191)
443 2g6b_A RAS-related protein RAB 92.1 0.078 2.7E-06 44.1 2.9 24 192-215 10-33 (180)
444 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.09 3.1E-06 42.9 3.1 25 192-216 23-47 (149)
445 3tw8_B RAS-related protein RAB 92.0 0.079 2.7E-06 44.0 2.9 23 192-214 9-31 (181)
446 3pqc_A Probable GTP-binding pr 92.0 0.083 2.8E-06 44.5 3.0 24 192-215 23-46 (195)
447 3clv_A RAB5 protein, putative; 92.0 0.079 2.7E-06 44.9 2.8 24 192-215 7-30 (208)
448 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.066 2.3E-06 52.5 2.6 26 191-216 137-162 (460)
449 2yv5_A YJEQ protein; hydrolase 91.9 0.077 2.6E-06 48.9 2.9 24 192-216 165-188 (302)
450 2qnr_A Septin-2, protein NEDD5 91.9 0.064 2.2E-06 49.4 2.3 21 194-214 20-40 (301)
451 2bov_A RAla, RAS-related prote 91.9 0.081 2.8E-06 45.1 2.9 24 192-215 14-37 (206)
452 2ew1_A RAS-related protein RAB 91.9 0.078 2.7E-06 45.5 2.7 24 192-215 26-49 (201)
453 3ch4_B Pmkase, phosphomevalona 91.9 0.12 4.2E-06 44.3 3.9 26 191-216 10-35 (202)
454 1f6b_A SAR1; gtpases, N-termin 91.9 0.064 2.2E-06 45.8 2.1 22 193-214 26-47 (198)
455 1gwn_A RHO-related GTP-binding 91.9 0.079 2.7E-06 45.6 2.7 24 192-215 28-51 (205)
456 1zd9_A ADP-ribosylation factor 91.9 0.084 2.9E-06 44.5 2.9 23 193-215 23-45 (188)
457 2gza_A Type IV secretion syste 91.9 0.065 2.2E-06 50.8 2.3 37 191-228 174-210 (361)
458 1wcv_1 SOJ, segregation protei 91.8 0.16 5.4E-06 45.4 4.8 37 191-227 5-42 (257)
459 1yqt_A RNAse L inhibitor; ATP- 91.8 0.081 2.8E-06 53.0 3.1 26 191-216 46-71 (538)
460 3reg_A RHO-like small GTPase; 91.8 0.085 2.9E-06 44.7 2.9 23 193-215 24-46 (194)
461 3oes_A GTPase rhebl1; small GT 91.8 0.082 2.8E-06 45.1 2.7 24 192-215 24-47 (201)
462 2gf9_A RAS-related protein RAB 91.8 0.087 3E-06 44.4 2.9 24 192-215 22-45 (189)
463 3q9l_A Septum site-determining 91.8 0.17 5.9E-06 45.0 5.0 35 193-227 3-38 (260)
464 2g3y_A GTP-binding protein GEM 91.8 0.081 2.8E-06 46.0 2.7 22 193-214 38-59 (211)
465 2fh5_B SR-beta, signal recogni 91.8 0.086 2.9E-06 45.4 2.9 24 192-215 7-30 (214)
466 2orv_A Thymidine kinase; TP4A 91.8 0.77 2.6E-05 40.2 8.9 107 192-309 19-125 (234)
467 2fg5_A RAB-22B, RAS-related pr 91.8 0.083 2.8E-06 44.7 2.7 23 193-215 24-46 (192)
468 2rcn_A Probable GTPase ENGC; Y 91.8 0.083 2.8E-06 49.8 2.9 24 193-216 216-239 (358)
469 1vg8_A RAS-related protein RAB 91.8 0.11 3.6E-06 44.4 3.5 24 192-215 8-31 (207)
470 2a5j_A RAS-related protein RAB 91.7 0.09 3.1E-06 44.4 2.9 23 193-215 22-44 (191)
471 3hdt_A Putative kinase; struct 91.7 0.1 3.5E-06 45.8 3.3 26 192-217 14-39 (223)
472 4akg_A Glutathione S-transfera 91.7 0.35 1.2E-05 57.1 8.5 25 192-216 1267-1291(2695)
473 3tkl_A RAS-related protein RAB 91.7 0.091 3.1E-06 44.4 2.9 24 192-215 16-39 (196)
474 2qag_B Septin-6, protein NEDD5 91.7 0.077 2.6E-06 51.2 2.6 25 191-215 39-65 (427)
475 4gzl_A RAS-related C3 botulinu 91.6 0.1 3.5E-06 44.7 3.2 24 192-215 30-53 (204)
476 2dpy_A FLII, flagellum-specifi 91.6 0.086 2.9E-06 51.3 2.9 38 189-227 154-191 (438)
477 1z06_A RAS-related protein RAB 91.6 0.092 3.2E-06 44.2 2.8 24 192-215 20-43 (189)
478 2gf0_A GTP-binding protein DI- 91.6 0.088 3E-06 44.6 2.7 24 192-215 8-31 (199)
479 1ega_A Protein (GTP-binding pr 91.6 0.097 3.3E-06 48.2 3.2 24 192-215 8-31 (301)
480 4dkx_A RAS-related protein RAB 91.6 0.094 3.2E-06 45.8 2.9 22 194-215 15-36 (216)
481 2p5s_A RAS and EF-hand domain 91.6 0.094 3.2E-06 44.7 2.9 24 192-215 28-51 (199)
482 2woo_A ATPase GET3; tail-ancho 91.5 0.25 8.5E-06 46.1 6.0 36 191-226 18-53 (329)
483 1t9h_A YLOQ, probable GTPase E 91.5 0.062 2.1E-06 49.6 1.8 24 192-215 173-196 (307)
484 2ius_A DNA translocase FTSK; n 91.5 0.57 2E-05 46.3 8.7 25 192-216 167-191 (512)
485 1x3s_A RAS-related protein RAB 91.5 0.096 3.3E-06 44.1 2.9 23 193-215 16-38 (195)
486 3tmk_A Thymidylate kinase; pho 91.5 0.12 4.2E-06 45.0 3.5 27 192-218 5-31 (216)
487 3igf_A ALL4481 protein; two-do 91.5 0.21 7.2E-06 47.4 5.4 35 193-227 3-37 (374)
488 2c61_A A-type ATP synthase non 91.4 0.34 1.2E-05 47.1 6.9 89 191-281 151-258 (469)
489 3f9v_A Minichromosome maintena 91.4 0.035 1.2E-06 56.4 -0.1 48 169-216 295-351 (595)
490 2r9v_A ATP synthase subunit al 91.4 0.27 9.2E-06 48.3 6.1 88 191-282 174-277 (515)
491 1zbd_A Rabphilin-3A; G protein 91.4 0.096 3.3E-06 44.7 2.7 23 193-215 9-31 (203)
492 3euj_A Chromosome partition pr 91.3 0.1 3.5E-06 51.3 3.0 24 193-216 30-53 (483)
493 2bcg_Y Protein YP2, GTP-bindin 91.2 0.1 3.5E-06 44.7 2.7 24 192-215 8-31 (206)
494 1ihu_A Arsenical pump-driving 91.2 0.21 7.3E-06 50.5 5.5 37 191-227 7-43 (589)
495 3ozx_A RNAse L inhibitor; ATP 91.2 0.086 3E-06 52.8 2.5 26 191-216 293-318 (538)
496 1byi_A Dethiobiotin synthase; 91.1 0.19 6.5E-06 43.7 4.5 34 193-226 2-36 (224)
497 2qe7_A ATP synthase subunit al 91.1 0.28 9.6E-06 48.0 6.0 88 191-282 161-264 (502)
498 1moz_A ARL1, ADP-ribosylation 91.1 0.072 2.5E-06 44.5 1.6 23 192-214 18-40 (183)
499 2q3h_A RAS homolog gene family 91.1 0.11 3.6E-06 44.3 2.7 24 192-215 20-43 (201)
500 3cph_A RAS-related protein SEC 91.1 0.11 3.8E-06 44.5 2.9 24 192-215 20-43 (213)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-44 Score=312.28 Aligned_cols=158 Identities=35% Similarity=0.618 Sum_probs=144.6
Q ss_pred CCCCCCCCCcccEEecCccccccCcchHHHHHHHhhCCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEecccccccC
Q 046970 2 ASSSLATKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASSS 80 (420)
Q Consensus 2 ~~s~~~~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~ 80 (420)
+||++++.++|||||||+|+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|.
T Consensus 26 ~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~ 105 (204)
T 3ozi_A 26 NPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105 (204)
T ss_dssp --------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCH
T ss_pred CCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCc
Confidence 445556889999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred C------------------eeEeeeeccCccccccccCcchHHHHHHHHhhccchhhHHhHHHHhhhhccccccCCCCCc
Q 046970 81 G------------------AWMNFFLSCSSSDVRNQTGSFGDAFVKLEKQFEELPEKVHKWSGALTEASNISGWDSTNMR 142 (420)
Q Consensus 81 w------------------~v~pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 142 (420)
| +|+||||+|+|++||+|+|+|+++|.+|..++.. +++++||.||+++++++||++.+..
T Consensus 106 WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp HHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred HHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCC
Confidence 9 7999999999999999999999999999988754 7899999999999999999999988
Q ss_pred hhhHHHHHHHHHHHhhhcc
Q 046970 143 PEARLVDEIVKDIMKKLKD 161 (420)
Q Consensus 143 ~e~~~i~~i~~~v~~~l~~ 161 (420)
.+.+++++|+++|+.+++.
T Consensus 184 ~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 184 KQGAIADKVSADIWSHISK 202 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 8999999999999998864
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-44 Score=306.08 Aligned_cols=157 Identities=41% Similarity=0.595 Sum_probs=127.5
Q ss_pred CCCCCCCCCCcccEEecCccccccCcchHHHHHHHhhCCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEeccccccc
Q 046970 1 MASSSLATKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASS 79 (420)
Q Consensus 1 ~~~s~~~~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s 79 (420)
|||| ..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|
T Consensus 1 msss---~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S 77 (176)
T 3jrn_A 1 MSSH---TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAAS 77 (176)
T ss_dssp ---------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTC
T ss_pred CCCC---CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCC
Confidence 5555 568999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CC-----------------eeEeeeeccCccccccccCcchHHHHHHHHhhccchhhHHhHHHHhhhhccccccCCCCCc
Q 046970 80 SG-----------------AWMNFFLSCSSSDVRNQTGSFGDAFVKLEKQFEELPEKVHKWSGALTEASNISGWDSTNMR 142 (420)
Q Consensus 80 ~w-----------------~v~pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 142 (420)
.| .|+||||+|+|++||+|+|+|+++|.+|+.+ ...+++++|+.||+++++++|+++. .
T Consensus 78 ~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~ 153 (176)
T 3jrn_A 78 SWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--D 153 (176)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--S
T ss_pred hhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--C
Confidence 99 8999999999999999999999999999988 3458999999999999999999984 4
Q ss_pred hhhHHHHHHHHHHHhhhccccc
Q 046970 143 PEARLVDEIVKDIMKKLKDKLL 164 (420)
Q Consensus 143 ~e~~~i~~i~~~v~~~l~~~~~ 164 (420)
+|+++|++|+++|.+++++++|
T Consensus 154 ~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 154 DDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp CHHHHHHHHHHHHHTTCC----
T ss_pred CHHHHHHHHHHHHHHHhcCCCC
Confidence 5999999999999999987765
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.9e-35 Score=297.95 Aligned_cols=238 Identities=17% Similarity=0.211 Sum_probs=184.3
Q ss_pred ccccccceeeecccccC-CCCceEEEEeccCcchHHHHHHHHHH----HhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 172 VGVNSRIRHIKSLLHLG-LPDFRIVGIWGMGGIGKTTFAGAIFN----QISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 172 vGR~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~~~~----~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
+||+.++++|.++|..+ .+..++|+|+||||+||||||+++|+ +++.+|++++|+. +++... .+...++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999654 34589999999999999999999997 6788999999996 322211 46888999999
Q ss_pred HHHhhccc--cCCCCC-----c-hHHHHHHhcCC-eEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhhcC
Q 046970 247 SEILEENL--KIGTLN-----L-PEYIKERLQQM-KVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECE 317 (420)
Q Consensus 247 ~~l~~~~~--~~~~~~-----~-~~~l~~~l~~~-~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~ 317 (420)
.++..... ...+.+ . ...+++.|.++ ++||||||||+.+++ .+.. .+||+||||||+..++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 99876532 122211 1 57888899996 999999999998876 3332 27999999999999988765
Q ss_pred -CCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCCChhHHHhHhhhc----cc
Q 046970 318 -VDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRKSVKPEKQCCFNR----GC 392 (420)
Q Consensus 318 -~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~~~~~----~~ 392 (420)
....|+|++|+.++|++||.++++.... ++.+.+++++|+++|+|+||||+++|+.|+.+.. +|.+.+... ..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4467999999999999999999976543 3567788999999999999999999999987732 232222211 11
Q ss_pred c-c-CccCCcccCcchhHHHHHH-----------HhhccC
Q 046970 393 R-L-LVAEPRYIFLPLSFMFLVT-----------LVALFD 419 (420)
Q Consensus 393 ~-~-l~~~~~~~~l~~~~~~~~~-----------~~~~f~ 419 (420)
. . -.-..+|..||.++..||. |||+|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp 400 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMP 400 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSC
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeC
Confidence 1 1 1115678889999999999 999995
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=3.8e-31 Score=294.34 Aligned_cols=241 Identities=19% Similarity=0.245 Sum_probs=177.5
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHH---hhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQ---ISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....||||+.++++|.++|....++.++|+|+||||+||||||++++++ ...+|...+|+..++... .......+.
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ 200 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLMKLQ 200 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHHHHHH
Confidence 6678999999999999999766667899999999999999999999986 355676655443343321 233444556
Q ss_pred HHHHHHhhccccCCCCC----c-hHHHHHHhcCC--eEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhh-
Q 046970 244 RVLSEILEENLKIGTLN----L-PEYIKERLQQM--KVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE- 315 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~----~-~~~l~~~l~~~--~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~- 315 (420)
.++..+........... . .+.++..+.++ |+||||||||+..+++.+ ++|++||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 66666654432221111 1 45566666666 999999999998876553 589999999999988744
Q ss_pred cCCCeEEEeCC-CCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCCChhHHHhHhhhccccc
Q 046970 316 CEVDSIYEVEG-LNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRKSVKPEKQCCFNRGCRL 394 (420)
Q Consensus 316 ~~~~~~~~l~~-L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~~~~~~~~~ 394 (420)
.+....+++++ |+.++|++||...++... +.+.+.+++|+++|+|+||||+++|++|+.++ ..|.+.+..+....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 45667889996 999999999998884432 23345689999999999999999999999876 46766654432211
Q ss_pred ---Ccc-------------CCcccCcchhHHHHHHHhhccC
Q 046970 395 ---LVA-------------EPRYIFLPLSFMFLVTLVALFD 419 (420)
Q Consensus 395 ---l~~-------------~~~~~~l~~~~~~~~~~~~~f~ 419 (420)
+.. +.+|..|+...+.||.|||+|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~ 390 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQ 390 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSC
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccC
Confidence 000 2346678889999999999996
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=4e-29 Score=261.15 Aligned_cols=226 Identities=17% Similarity=0.149 Sum_probs=160.5
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHH--Hhhccccc-eEEEEeccccccccCHHHHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFN--QISSEFEG-ECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~f~~-~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+. ++|+. .+...+...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHH
Confidence 44599999999999998743 3478999999999999999999997 46888997 66776 34445566666666
Q ss_pred HHHHhhcccc---CCC--------CCc-hHHHHHHh---cCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCCh
Q 046970 246 LSEILEENLK---IGT--------LNL-PEYIKERL---QQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDK 310 (420)
Q Consensus 246 l~~l~~~~~~---~~~--------~~~-~~~l~~~l---~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~ 310 (420)
+..+...... ..+ .+. .+.+++.| .++++||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 5544322110 000 011 34556555 6799999999999999888762 789999999999
Q ss_pred hhhhhcCCCeEEEeC------CCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCC--ChhH
Q 046970 311 QVFDECEVDSIYEVE------GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRK--SVKP 382 (420)
Q Consensus 311 ~~~~~~~~~~~~~l~------~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~--~~~~ 382 (420)
.++..+.....|+|+ +|+.+||++||.++. +.. .. ++..++ |+|+||||+++|++|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887543333345666 899999999999984 322 11 223333 999999999999999987 5667
Q ss_pred HHhHhhhcccccCc--cCCcccCcchhH-HHHHHHhhccC
Q 046970 383 EKQCCFNRGCRLLV--AEPRYIFLPLSF-MFLVTLVALFD 419 (420)
Q Consensus 383 ~~~~~~~~~~~~l~--~~~~~~~l~~~~-~~~~~~~~~f~ 419 (420)
|... ....+. -+.++..|+... +.||.|||+|+
T Consensus 347 W~~~----~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFP 382 (1221)
T 1vt4_I 347 WKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382 (1221)
T ss_dssp HHHC----SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSC
T ss_pred HhcC----ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 7653 000000 023455666677 99999999996
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=251.50 Aligned_cols=239 Identities=18% Similarity=0.232 Sum_probs=166.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh---hcccc-ceEEEEeccccccccCHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI---SSEFE-GECFITNVREESERVGLVHLR 242 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~f~-~~~~v~~~~~~~~~~~~~~l~ 242 (420)
.+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. +.+|+ +++|+. ++... ...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHHHHHH
Confidence 56789999999999999997655568999999999999999999999754 67885 567766 32221 11122222
Q ss_pred HHHHHHHhhccc--cC--CCCCc-hHHHHHHhcC--CeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhhhh
Q 046970 243 ERVLSEILEENL--KI--GTLNL-PEYIKERLQQ--MKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE 315 (420)
Q Consensus 243 ~~ll~~l~~~~~--~~--~~~~~-~~~l~~~l~~--~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~ 315 (420)
..+...+..... .. .+.+. ...+...+.+ +++||||||+|+..+++.+ +++++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 223333321111 11 11112 4556666665 7899999999998776543 578999999999987765
Q ss_pred cCCCeEEEe---CCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHhcCCChhHHHhHhhhccc
Q 046970 316 CEVDSIYEV---EGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFFYRKSVKPEKQCCFNRGC 392 (420)
Q Consensus 316 ~~~~~~~~l---~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L~~~~~~~~~~~~~~~~~ 392 (420)
.. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|++|+.+. ..|...+..+..
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 43 345555 5899999999999988542 222235688999999999999999999998764 467766544321
Q ss_pred ccCc-------c---------CCcccCcchhHHHHHHHhhccC
Q 046970 393 RLLV-------A---------EPRYIFLPLSFMFLVTLVALFD 419 (420)
Q Consensus 393 ~~l~-------~---------~~~~~~l~~~~~~~~~~~~~f~ 419 (420)
.... . +.++-.|+...+.||.|||+|+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~ 390 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQ 390 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCC
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccC
Confidence 1100 0 2235578888899999999994
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.93 E-value=2.1e-27 Score=200.76 Aligned_cols=100 Identities=19% Similarity=0.348 Sum_probs=94.1
Q ss_pred CCCcccEEecCccccccCcchHHHHHHHhhCCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEecccccccCC-----
Q 046970 8 TKGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASSSG----- 81 (420)
Q Consensus 8 ~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w----- 81 (420)
+.++|||||||+++| +..|++||+.+|+++|++||+|+ ++.+|+.|.++|.+||++|+++|+|+|+||+.|.|
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 468999999999999 55799999999999999999999 89999999999999999999999999999999999
Q ss_pred ------------eeEeeeeccCccccccccCcchHHHHH
Q 046970 82 ------------AWMNFFLSCSSSDVRNQTGSFGDAFVK 108 (420)
Q Consensus 82 ------------~v~pvfy~v~ps~vr~~~~~~~~~~~~ 108 (420)
.|+||||+++|++|++|.|.|++.|..
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 799999999999999999999987643
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.85 E-value=3e-23 Score=172.72 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=80.9
Q ss_pred CCCCCCCCcccEEecCccccccCcchHHHHHHHhh--CCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEeccccccc
Q 046970 3 SSSLATKGRYDVFLSFRGEDTRDNFTSHLFAALRQ--KRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASS 79 (420)
Q Consensus 3 ~s~~~~~~~~dvfis~~~~d~~~~~~~~L~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s 79 (420)
++|+...+.|||||||+++|++ |+++|+.+|++ .|+++|+++ ++.+|+.|.++|.+||++|+++|+|+|+||+.|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 4566778899999999999964 69999999998 599999999 999999999999999999999999999999999
Q ss_pred CC-----------------eeEeeeeccCcccc----ccccCcchHHHHHHHHhhccchhhHHhHHHHh
Q 046970 80 SG-----------------AWMNFFLSCSSSDV----RNQTGSFGDAFVKLEKQFEELPEKVHKWSGAL 127 (420)
Q Consensus 80 ~w-----------------~v~pvfy~v~ps~v----r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al 127 (420)
.| +|+||||+++++++ +.....-. ..+...+....+.+.+|++++
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99 68899999986654 33322111 112233333445788888765
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.75 E-value=3.5e-19 Score=149.07 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=76.0
Q ss_pred CCCcccEEecCccccccCcchHH-HHHHHhhC--CCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEecccccccCC--
Q 046970 8 TKGRYDVFLSFRGEDTRDNFTSH-LFAALRQK--RIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASSSG-- 81 (420)
Q Consensus 8 ~~~~~dvfis~~~~d~~~~~~~~-L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w-- 81 (420)
..+.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|+||+.|.|
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999995 69997 99999987 99999999 99999999999999999999999999999999999
Q ss_pred ----------------eeEeeeecc
Q 046970 82 ----------------AWMNFFLSC 90 (420)
Q Consensus 82 ----------------~v~pvfy~v 90 (420)
+|+||||+-
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 699999973
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.75 E-value=6.3e-19 Score=151.37 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=77.5
Q ss_pred CCCCCcccEEecCccccccCcchHH-HHHHHhh--CCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEecccccccCC
Q 046970 6 LATKGRYDVFLSFRGEDTRDNFTSH-LFAALRQ--KRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASSSG 81 (420)
Q Consensus 6 ~~~~~~~dvfis~~~~d~~~~~~~~-L~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w 81 (420)
....+.|||||||+++|+ +|+.+ |+.+|++ +|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|+||+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 356789999999999995 79985 9999998 899999999 99999999999999999999999999999999999
Q ss_pred ------------------eeEeeeeccCc
Q 046970 82 ------------------AWMNFFLSCSS 92 (420)
Q Consensus 82 ------------------~v~pvfy~v~p 92 (420)
+|+||||+-.|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 79999998443
No 11
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.74 E-value=4.1e-19 Score=150.16 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=77.8
Q ss_pred CCCCcccEEecCccccccCcchHHHHHHHhhC--CCceeeeC-CCCCCCcchHHHHHHhh-hcceeEEEecccccccCC-
Q 046970 7 ATKGRYDVFLSFRGEDTRDNFTSHLFAALRQK--RIKIFIDE-EANRGDEISLALLNAIE-GSKISIVIFSKNYASSSG- 81 (420)
Q Consensus 7 ~~~~~~dvfis~~~~d~~~~~~~~L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~-~s~~~i~v~S~~y~~s~w- 81 (420)
+..+.|||||||+++| ..|+.+|+.+|+++ |+++|+++ ++.+|+.+.++|.++|+ +|+++|+|+|+||+.|.|
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4568999999999999 57999999999985 69999999 99999999999999999 799999999999999999
Q ss_pred -----------------eeEeeeeccCc
Q 046970 82 -----------------AWMNFFLSCSS 92 (420)
Q Consensus 82 -----------------~v~pvfy~v~p 92 (420)
+|+||||+..+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 79999999654
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.71 E-value=5.4e-18 Score=143.15 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=74.4
Q ss_pred CcccEEecCccccc---------cCcchHHHHH-HHh-hCCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEeccccc
Q 046970 10 GRYDVFLSFRGEDT---------RDNFTSHLFA-ALR-QKRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYA 77 (420)
Q Consensus 10 ~~~dvfis~~~~d~---------~~~~~~~L~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~ 77 (420)
+.|||||||+++|+ +.+||.+|.. .|+ +.|+++|+++ |+.+|+.+.++|.+||++|+++|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999997 3568888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -ccCC------------------eeEeeeeccCcc
Q 046970 78 -SSSG------------------AWMNFFLSCSSS 93 (420)
Q Consensus 78 -~s~w------------------~v~pvfy~v~ps 93 (420)
.|.| +|+||||.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999 899999885443
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=1.6e-15 Score=145.21 Aligned_cols=196 Identities=17% Similarity=0.179 Sum_probs=121.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccc---cccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREES---ERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~---~~~~~~~l~~ 243 (420)
.+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. +.... .......+.+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHHH
Confidence 5577999999999999988742 6899999999999999999998751 55554 22111 0113344444
Q ss_pred HHHHHHhhc--------------cccC----CCCCc-hHHHHHHhcC-CeEEEEEeCCCCHH--------H-HHHHhcCC
Q 046970 244 RVLSEILEE--------------NLKI----GTLNL-PEYIKERLQQ-MKVFIVLDDVNKPE--------Q-LIFLVGGL 294 (420)
Q Consensus 244 ~ll~~l~~~--------------~~~~----~~~~~-~~~l~~~l~~-~~~LlVLDdv~~~~--------~-l~~l~~~~ 294 (420)
.+...+... .... ..... ...+.+.... ++++|||||++... . +..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 444433210 0000 11111 3334443332 49999999996532 2 22222111
Q ss_pred CCCCCCcEEEeecCChhhhhh-----------c-CCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhc
Q 046970 295 DRFGPRSRIIVTTRDKQVFDE-----------C-EVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYAN 362 (420)
Q Consensus 295 ~~~~~g~~IIiTtR~~~~~~~-----------~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~ 362 (420)
.. .++.++|+|++....+.. . .....+++.+|+.+|+.+++............ .+.+.++++.++
T Consensus 160 ~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLD 236 (350)
T ss_dssp HH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHT
T ss_pred Hh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhC
Confidence 11 246789999887543211 1 12357899999999999999875422111111 245789999999
Q ss_pred CChHHHHHHHHHh
Q 046970 363 GNPLALKVLGSFF 375 (420)
Q Consensus 363 G~PLal~~~~~~L 375 (420)
|+|+++..++..+
T Consensus 237 G~P~~l~~~~~~~ 249 (350)
T 2qen_A 237 GIPGWLVVFGVEY 249 (350)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998764
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=5.1e-15 Score=142.03 Aligned_cols=196 Identities=17% Similarity=0.188 Sum_probs=118.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccc--cccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREES--ERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~--~~~~~~~l~~~ 244 (420)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+. ..... .......+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHHHH
Confidence 55789999999999998 763 599999999999999999999886432 45665 22110 00122333333
Q ss_pred HHHHHhh-------------cc---------ccCC----CCCchHHHHHHhcC---CeEEEEEeCCCCHH-----HHHHH
Q 046970 245 VLSEILE-------------EN---------LKIG----TLNLPEYIKERLQQ---MKVFIVLDDVNKPE-----QLIFL 290 (420)
Q Consensus 245 ll~~l~~-------------~~---------~~~~----~~~~~~~l~~~l~~---~~~LlVLDdv~~~~-----~l~~l 290 (420)
+...+.. .. .... .......+.+.+.. ++++|||||++... ++..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 3222211 00 0000 01123334343432 49999999995532 11111
Q ss_pred hcCCCCCCCCcEEEeecCChhhhhh-----------cC-CCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHH
Q 046970 291 VGGLDRFGPRSRIIVTTRDKQVFDE-----------CE-VDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVV 358 (420)
Q Consensus 291 ~~~~~~~~~g~~IIiTtR~~~~~~~-----------~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~ 358 (420)
+..+....++.++|+|++....... .+ ....+++.+|+.+++.+++............. ...++
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~ 236 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVY 236 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHH
Confidence 1111111246789999987643221 11 13678999999999999998754211111111 17899
Q ss_pred HHhcCChHHHHHHHHHhc
Q 046970 359 DYANGNPLALKVLGSFFY 376 (420)
Q Consensus 359 ~~~~G~PLal~~~~~~L~ 376 (420)
+.++|+|+++..++..+.
T Consensus 237 ~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHCSCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHc
Confidence 999999999999987764
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=1.1e-14 Score=142.68 Aligned_cols=199 Identities=13% Similarity=0.082 Sum_probs=124.8
Q ss_pred CCCCcccccccceeeeccc-cc--CC--CCceEEEE--eccCcchHHHHHHHHHHHhhccc-----c-ceEEEEeccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLL-HL--GL--PDFRIVGI--WGMGGIGKTTFAGAIFNQISSEF-----E-GECFITNVREES 233 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~~f-----~-~~~~v~~~~~~~ 233 (420)
.+..|+||+.++++|.+++ .. .. ...+.+.| +|++|+|||||++++++.....+ . ..+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4477999999999999988 42 11 23456777 99999999999999998875531 2 234554 22
Q ss_pred cccCHHHHHHHHHHHHhhccccCC-CCCc-hHHHHHHhc--CCeEEEEEeCCCCH--------HHHHHHhcCCCCC---C
Q 046970 234 ERVGLVHLRERVLSEILEENLKIG-TLNL-PEYIKERLQ--QMKVFIVLDDVNKP--------EQLIFLVGGLDRF---G 298 (420)
Q Consensus 234 ~~~~~~~l~~~ll~~l~~~~~~~~-~~~~-~~~l~~~l~--~~~~LlVLDdv~~~--------~~l~~l~~~~~~~---~ 298 (420)
.......+...++..+........ +... ...+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 334566777787777643321111 1111 445555554 67999999999653 3333333222111 2
Q ss_pred --CCcEEEeecCChhhhhh---------cCCCeEEEeCCCCHHHHHHHHHhcc---cCCCCCchhHHHHHHHHHHHhc--
Q 046970 299 --PRSRIIVTTRDKQVFDE---------CEVDSIYEVEGLNKDESLELFSNFA---FRQKICPKDFLVLSKRVVDYAN-- 362 (420)
Q Consensus 299 --~g~~IIiTtR~~~~~~~---------~~~~~~~~l~~L~~~ea~~L~~~~a---~~~~~~~~~~~~~~~~i~~~~~-- 362 (420)
....+|+||++..+... ......+++++|+.+++.++|...+ +.....+ .+....+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGED 252 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHh
Confidence 34558878876543211 1122348999999999999997654 2221222 256778999999
Q ss_pred ----CChHHHHHHH
Q 046970 363 ----GNPLALKVLG 372 (420)
Q Consensus 363 ----G~PLal~~~~ 372 (420)
|+|..+..+.
T Consensus 253 ~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 253 KGGDGSARRAIVAL 266 (412)
T ss_dssp GTSCCCHHHHHHHH
T ss_pred ccCCCcHHHHHHHH
Confidence 9997655544
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=4.8e-13 Score=129.85 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=126.0
Q ss_pred CCCcccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhcc--------ccceEEEEecccccccc-
Q 046970 168 FTGSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE--------FEGECFITNVREESERV- 236 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------f~~~~~v~~~~~~~~~~- 236 (420)
+..++||+.+++++..++.. .....+.+.|+|++|+|||+||+.+++.+... ....+++. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 36799999999999887754 23345689999999999999999999987443 22334444 22223
Q ss_pred CHHHHHHHHHHHHhhccccCCCC--Cc-hHHHHHHhcCCeEEEEEeCCCCHH------H-HHHHhcCCCCCCCCcEEEee
Q 046970 237 GLVHLRERVLSEILEENLKIGTL--NL-PEYIKERLQQMKVFIVLDDVNKPE------Q-LIFLVGGLDRFGPRSRIIVT 306 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~--~~-~~~l~~~l~~~~~LlVLDdv~~~~------~-l~~l~~~~~~~~~g~~IIiT 306 (420)
....+...++..+.+........ .. ...+.+.+..++.+|||||++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 55667777777765433221111 12 566677777766699999996543 2 33444332 67788888
Q ss_pred cCChhhhhh------cCCCeEEEeCCCCHHHHHHHHHhccc---CCCCCchhHHHHHHHHHHHhc---CChH-HHHHH
Q 046970 307 TRDKQVFDE------CEVDSIYEVEGLNKDESLELFSNFAF---RQKICPKDFLVLSKRVVDYAN---GNPL-ALKVL 371 (420)
Q Consensus 307 tR~~~~~~~------~~~~~~~~l~~L~~~ea~~L~~~~a~---~~~~~~~~~~~~~~~i~~~~~---G~PL-al~~~ 371 (420)
|+....... ......+++++++.++..+++...+. .....++ +..+.+++.++ |.|. ++..+
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l 245 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLL 245 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHH
Confidence 887532111 11234899999999999999998742 2222222 34667888888 9887 44433
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.43 E-value=1.5e-12 Score=117.47 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=117.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++||+..++.|..++..+. ....+.|+|++|+||||||+.+++.....+.....- . ..... ...+.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-----~---~~~~~-~~~~~ 90 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-----C---GVCDN-CREIE 90 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC-----C---SCSHH-HHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-----C---cccHH-HHHHh
Confidence 34569999999999999887542 235889999999999999999998765432110000 0 00000 00000
Q ss_pred HHHhhccccCCCCC--chHHHH---HHh-----cCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEeecCChhhhh
Q 046970 247 SEILEENLKIGTLN--LPEYIK---ERL-----QQMKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIVTTRDKQVFD 314 (420)
Q Consensus 247 ~~l~~~~~~~~~~~--~~~~l~---~~l-----~~~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~ 314 (420)
.............. ....+. +.+ .+++.+||+||++. ...++.+...+.....+..+|+||+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000000000000 011111 111 24679999999954 4455555554443456778888887654221
Q ss_pred --hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 315 --ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 315 --~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
.......+++++++.++..+++...+........ .+..+.+++.++|+|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123468899999999999999887643322211 2457789999999999998776544
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=2.9e-13 Score=131.15 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=118.8
Q ss_pred CCCCcccccccceeeecccccC--CCCceEEEEeccCcchHHHHHHHHHHHhhcccc---ceEEEEeccccccccCHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG--LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE---GECFITNVREESERVGLVHL 241 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~v~~~~~~~~~~~~~~l 241 (420)
.+..|+||+.+++.|.+++... ....+.+.|+|++|+|||||++.+++.....+. ..+|+. .........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHH
Confidence 4578999999999999888742 344678999999999999999999998766532 344444 2222344445
Q ss_pred HHHHHHHHhhccccCC-CCCc-hHHHHHHhc--CCeEEEEEeCCCCH------HHHHHHhcCCCC-CCCCcEEEeecCCh
Q 046970 242 RERVLSEILEENLKIG-TLNL-PEYIKERLQ--QMKVFIVLDDVNKP------EQLIFLVGGLDR-FGPRSRIIVTTRDK 310 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~-~~~~-~~~l~~~l~--~~~~LlVLDdv~~~------~~l~~l~~~~~~-~~~g~~IIiTtR~~ 310 (420)
...++..+........ .... ...+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||++.
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5555444422111100 0111 344455554 34899999998543 233334322211 13455677788765
Q ss_pred hhhhhcC-------CCeEEEeCCCCHHHHHHHHHhccc---CCCCCchhHHHHHHHHHHHhc---CChHHHH
Q 046970 311 QVFDECE-------VDSIYEVEGLNKDESLELFSNFAF---RQKICPKDFLVLSKRVVDYAN---GNPLALK 369 (420)
Q Consensus 311 ~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~a~---~~~~~~~~~~~~~~~i~~~~~---G~PLal~ 369 (420)
....... ....+++++++.++..+++...+. ...... .+..+.+++.++ |.|..+.
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 4322211 125899999999999999987642 112222 245667777787 9998443
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=9.5e-13 Score=127.63 Aligned_cols=192 Identities=11% Similarity=0.060 Sum_probs=119.8
Q ss_pred CCCCcccccccceeeecccccC--CCCceEEEEeccCcchHHHHHHHHHHHhhccc-----c-ceEEEEeccccccccCH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG--LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-----E-GECFITNVREESERVGL 238 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-----~-~~~~v~~~~~~~~~~~~ 238 (420)
.+..++||+.+++++..++... ....+.+.|+|++|+||||||+.+++...... . ..+++. .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4478999999999999988542 34467899999999999999999998774431 2 234444 2233455
Q ss_pred HHHHHHHHHHHhhccccCCC-CCc-hHHHHHHhc--CCeEEEEEeCCCCHH-------HHHHHhcCCCCC--CCCcEEEe
Q 046970 239 VHLRERVLSEILEENLKIGT-LNL-PEYIKERLQ--QMKVFIVLDDVNKPE-------QLIFLVGGLDRF--GPRSRIIV 305 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~-~~~-~~~l~~~l~--~~~~LlVLDdv~~~~-------~l~~l~~~~~~~--~~g~~IIi 305 (420)
..+...++..+......... ... ...+.+.+. +++.+||||+++... .+..+....... ..+..+|.
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 66677777776432211111 111 445555553 468999999997543 233333322211 34567777
Q ss_pred ecCChhh--------hhhcCCCeEEEeCCCCHHHHHHHHHhccc---CCCCCchhHHHHHHHHHHHhc---CChH
Q 046970 306 TTRDKQV--------FDECEVDSIYEVEGLNKDESLELFSNFAF---RQKICPKDFLVLSKRVVDYAN---GNPL 366 (420)
Q Consensus 306 TtR~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~a~---~~~~~~~~~~~~~~~i~~~~~---G~PL 366 (420)
||+.... .... ....+.+++++.++..+++...+. .....++ +..+.+++.++ |.|.
T Consensus 173 ~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHH
T ss_pred EECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHH
Confidence 7776532 1111 125789999999999999987752 2222222 34677888888 9994
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=6.9e-12 Score=121.73 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=124.3
Q ss_pred CCCCcccccccceeeeccccc----CCCCceEEEEeccCcchHHHHHHHHHHHhhccc-cceEEEEeccccccccCHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL----GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EGECFITNVREESERVGLVHL 241 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~l 241 (420)
.++.++||+.+++++..++.. ..+..+.+.|+|++|+|||||++.+++...... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 347799999999999988864 222234899999999999999999999876542 2344444 2233445566
Q ss_pred HHHHHHHHhhccccCCCCC--c-hHHHHHHhc--CCeEEEEEeCCCC--HHHHHHHhcCCCCCC----CCcEEEeecCCh
Q 046970 242 RERVLSEILEENLKIGTLN--L-PEYIKERLQ--QMKVFIVLDDVNK--PEQLIFLVGGLDRFG----PRSRIIVTTRDK 310 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~--~-~~~l~~~l~--~~~~LlVLDdv~~--~~~l~~l~~~~~~~~----~g~~IIiTtR~~ 310 (420)
...++..+...... .... . ...+.+.+. +++.+||||+++. ...+..+...+.... .+..+|++|++.
T Consensus 91 ~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 91 IGEIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 66666665332111 1111 1 334444443 5689999999965 344555544443222 366788887766
Q ss_pred hhhhhcC-------CCeEEEeCCCCHHHHHHHHHhcccC---CCCCchhHHHHHHHHHHHh---------cCChHHHHHH
Q 046970 311 QVFDECE-------VDSIYEVEGLNKDESLELFSNFAFR---QKICPKDFLVLSKRVVDYA---------NGNPLALKVL 371 (420)
Q Consensus 311 ~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~a~~---~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~ 371 (420)
....... ....+.+++++.++..+++...+.. ....+ .+..+.+++.+ +|.|..+..+
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 4322211 1236899999999999999877532 22222 25677888999 7987655443
No 21
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=6.9e-12 Score=111.51 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=112.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEEeccccccccCHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
....++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+. ....+...+.. .
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~ 88 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVVRH-K 88 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHHHH-H
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHHHH-H
Confidence 44679999999999999887542 3348999999999999999999876433 2222222111 11112211111 1
Q ss_pred HHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhhhh--hcCCCeE
Q 046970 246 LSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQVFD--ECEVDSI 321 (420)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~--~~~~~~~ 321 (420)
+....... . ....++.+||+||++.. ...+.+...+.....+.++|+||+...... .......
T Consensus 89 ~~~~~~~~----~---------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 89 IKEFARTA----P---------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHHHTSC----C---------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhccc----C---------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 11111100 0 01256899999999653 334444433333346778888887653211 1122358
Q ss_pred EEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 322 YEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 322 ~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
+++++++.++..+++...+........ .+....+++.++|+|..+..+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999887643221111 2456788899999999655443
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=138.58 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=77.2
Q ss_pred CCCCcccEEecCccccccCcch-HHHHHHHhh-----CCCceeeeC-CCCCCCcchHHHHHHhhhcceeEEEeccccccc
Q 046970 7 ATKGRYDVFLSFRGEDTRDNFT-SHLFAALRQ-----KRIKIFIDE-EANRGDEISLALLNAIEGSKISIVIFSKNYASS 79 (420)
Q Consensus 7 ~~~~~~dvfis~~~~d~~~~~~-~~L~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s 79 (420)
...++|||||||+++|. .|| .+|...||. .|+++|+++ |+.+|+.|.++|.+||++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35789999999999995 567 789999985 689999999 999999999999999999999999999999999
Q ss_pred CC------------------eeEeeeeccCcc
Q 046970 80 SG------------------AWMNFFLSCSSS 93 (420)
Q Consensus 80 ~w------------------~v~pvfy~v~ps 93 (420)
.| +|+||||+-.|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99 799999986554
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=8e-11 Score=111.14 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=112.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccc-eEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEG-ECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~-~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|++..++.|.+++..+. .+.+.|+|++|+|||++|+.+++.+... +.. .+.+. . ....+... .+.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~~-i~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDDRGIDV-VRN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSCCSHHH-HHT
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccccChHH-HHH
Confidence 34679999999999999887543 2338999999999999999999986432 221 22222 1 11112211 122
Q ss_pred HHHHHhhccccCCCCCchHHHHHHh-cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhhh-hh-cCCC
Q 046970 245 VLSEILEENLKIGTLNLPEYIKERL-QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQVF-DE-CEVD 319 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~~-~~-~~~~ 319 (420)
++..+..... .+ .+++.++|+||++.. ...+.+...+.....++++|+||+..... .. ....
T Consensus 92 ~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 92 QIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2222211000 01 345889999999653 33333433333334667788887664321 11 1234
Q ss_pred eEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHHHHH
Q 046970 320 SIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVLGSF 374 (420)
Q Consensus 320 ~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~~ 374 (420)
..+++++++.++..+++...+.......+ .+.+..+++.++|.|. ++..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 68999999999999999876632221111 2456789999999995 45555443
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=6.2e-10 Score=105.18 Aligned_cols=185 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc-cc-eEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EG-ECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~-~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+.... .. ...+. .. ...+... ...
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~---~~~~~~~-~~~ 95 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-AS---DERGINV-IRE 95 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TT---CHHHHHT-THH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-cc---ccCchHH-HHH
Confidence 4567999999999999888754 333489999999999999999999864322 11 22222 11 1001110 011
Q ss_pred HHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhhh-hh-cCCCe
Q 046970 245 VLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQVF-DE-CEVDS 320 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~~-~~-~~~~~ 320 (420)
.+....... ....+++.++|+||++.. .....+...+.....++++|+||...... .. .....
T Consensus 96 ~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 96 KVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 111110000 001256889999999643 34444544443334677888888765321 11 11235
Q ss_pred EEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHH
Q 046970 321 IYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGS 373 (420)
Q Consensus 321 ~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 373 (420)
.+++++++.++..+++...+.......+ .+..+.+++.++|.|..+..+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT--EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHCCCCHHHHHHHHH
Confidence 7899999999999999877643322111 24567889999999996654433
No 25
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.01 E-value=3.2e-09 Score=99.89 Aligned_cols=177 Identities=13% Similarity=0.092 Sum_probs=111.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc-cccc-eEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS-EFEG-ECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~-~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+.. .+.. ...+. .........+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~------ 85 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVV------ 85 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTS------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHH------
Confidence 44669999999999999887542 334899999999999999999987632 2211 12222 1110000001
Q ss_pred HHHHHhhccccCCCCCchHHHHHHh------cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChhh-hhh
Q 046970 245 VLSEILEENLKIGTLNLPEYIKERL------QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQV-FDE 315 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~~~~l~~~l------~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~~-~~~ 315 (420)
...+.... .+++.++|+|+++.. ...+.+...+.....++++|+||....- ...
T Consensus 86 -----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 86 -----------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp -----------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred -----------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 11111111 246789999998643 4455566666555567788887765432 111
Q ss_pred -cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 316 -CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 316 -~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
......+++.+++.++..+++...+......-. .+....+++.++|.+..+..+
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC--HHHHHHHHHTTTTCHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 123468999999999999999877643322211 245678889999999865543
No 26
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.94 E-value=4.2e-09 Score=101.42 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=112.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|++..++.|...+..+. ....+.|+|++|+||||+|+.+++.+....... ....+.......+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDNCREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHHHHHHh
Confidence 44679999999999998886542 245788999999999999999998764321100 00000000011111
Q ss_pred HHHhhc----cc-cCCCCCchHHHHHHhc-----CCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEeecCChhh-h
Q 046970 247 SEILEE----NL-KIGTLNLPEYIKERLQ-----QMKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIVTTRDKQV-F 313 (420)
Q Consensus 247 ~~l~~~----~~-~~~~~~~~~~l~~~l~-----~~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIiTtR~~~~-~ 313 (420)
...... .. .....+....+.+.+. +++.++|+||++. ....+.++..+.....+..+|++|.+..- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000000 00 0011122333333332 4578999999954 34445555444433456677777664432 1
Q ss_pred h-hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 314 D-ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 314 ~-~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
. .......+++.+++.++..+++...+........ .+.+..+++.++|+|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1223478899999999999999876532221111 2456789999999999877554
No 27
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1e-08 Score=95.87 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=97.1
Q ss_pred Ccccccccceeeeccccc--CCCCceEEEEeccCcchHHHHHHHHHHHhhcccc-------ceEEEEeccccccccCHHH
Q 046970 170 GSVGVNSRIRHIKSLLHL--GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE-------GECFITNVREESERVGLVH 240 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-------~~~~v~~~~~~~~~~~~~~ 240 (420)
.+.||+.|+++|...|.. .......+.|+|++|+|||++++.+++.+..... ..+.+. .....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHH
Confidence 388999999999887753 2345678899999999999999999998754321 123343 122234456
Q ss_pred HHHHHHHHHhhccccCCCCCchHHHHHH---h---cCCeEEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 241 LRERVLSEILEENLKIGTLNLPEYIKER---L---QQMKVFIVLDDVNKP---EQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~~~~~l~~~---l---~~~~~LlVLDdv~~~---~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
+...+..++.+..... ......+.+. + .+++++++||+++.. +.+..+............+|.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 6777777775543211 1113333332 2 356899999999654 333333321000011223333343322
Q ss_pred h----h-----hhcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 312 V----F-----DECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 312 ~----~-----~~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
. + ..+ ....+.+++++.++..+++..++
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 122 12578999999999999998776
No 28
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.88 E-value=6.1e-09 Score=98.37 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=106.9
Q ss_pred CCCCcccccccceeeeccccc---CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL---GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....++|++..+..+..++.. .......+.|+|++|+|||+||+.+++.....| .++. .... ....
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~---~~~~---- 78 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAI---EKPG---- 78 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTC---CSHH----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cccc---CChH----
Confidence 456799999999888887752 112345788999999999999999998764322 2222 1111 1111
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhc---CCeEEEEEeCCCCHH--HHHHHhcCCCCC------------------CCC
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQ---QMKVFIVLDDVNKPE--QLIFLVGGLDRF------------------GPR 300 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~---~~~~LlVLDdv~~~~--~l~~l~~~~~~~------------------~~g 300 (420)
.+...+. .++.+|+||+++... ....+...+... .++
T Consensus 79 --------------------~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 79 --------------------DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp --------------------HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred --------------------HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111221 245689999996542 222222211100 023
Q ss_pred cEEEeecCChhhhh-h--cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHHHHh
Q 046970 301 SRIIVTTRDKQVFD-E--CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLGSFF 375 (420)
Q Consensus 301 ~~IIiTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~L 375 (420)
.++|.||....... . ......+++++++.++..+++...+........ .+....++++++|+|..+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55666665432211 1 112358899999999999999887643222111 2557889999999999888776554
No 29
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.86 E-value=4.8e-09 Score=90.61 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=41.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....++||+.+++++.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988753 3457889999999999999999987643
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.84 E-value=2e-08 Score=92.98 Aligned_cols=181 Identities=18% Similarity=0.291 Sum_probs=103.2
Q ss_pred CCCCcccccccceeeecccccC-----------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG-----------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER 235 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~ 235 (420)
....++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....| ..+. .......
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~~~ 90 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELVKK 90 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGCCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHHHh
Confidence 4467889998888887766421 23456789999999999999999998764332 1111 1111000
Q ss_pred cCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCC--CC
Q 046970 236 VGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLD--RF 297 (420)
Q Consensus 236 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~--~~ 297 (420)
. .... ...+ ...+.......+.+|+||+++.. ..+..++..+. ..
T Consensus 91 ~-~~~~-~~~~---------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 91 F-IGEG-ASLV---------------KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp S-TTHH-HHHH---------------HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred c-cchH-HHHH---------------HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 0000 0000 11122223456789999999543 12333332221 11
Q ss_pred CCCcEEEeecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC-ChHHHHHH
Q 046970 298 GPRSRIIVTTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG-NPLALKVL 371 (420)
Q Consensus 298 ~~g~~IIiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 371 (420)
..+..||.||.....+. .......+.++..+.++..+++............ .....+++.+.| .|-.+..+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHH
Confidence 24567788887554322 1124457899999999999999887643222111 113567777776 56455544
No 31
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.80 E-value=2.5e-09 Score=96.26 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=98.2
Q ss_pred CCCCccccc---ccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVN---SRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~---~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
..++|+|.+ ..++.+..++... ..+.+.|+|++|+||||||+.+++..........++. ....... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H-----
Confidence 446788743 3344444444422 4578899999999999999999998765544455554 1111000 0
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH--H--HHHHhcCCCCC-CCC-cEEEeecCChh------
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE--Q--LIFLVGGLDRF-GPR-SRIIVTTRDKQ------ 311 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~--~--l~~l~~~~~~~-~~g-~~IIiTtR~~~------ 311 (420)
...+ +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...
T Consensus 96 ------------------~~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 96 ------------------TALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ------------------GGGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ------------------HHHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0000 011 345689999985431 1 22222211100 122 24777776432
Q ss_pred ---hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 312 ---VFDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 312 ---~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
+.........+++++++.++..+++...+........ .+....+++.++|++..+..+-
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP--EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHccCCHHHHHHHH
Confidence 1111112378899999999999999887632221111 2456788899999998776543
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.78 E-value=1.6e-07 Score=90.04 Aligned_cols=204 Identities=16% Similarity=0.167 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHhhhcccccccCCCCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHH
Q 046970 144 EARLVDEIVKDIMKKLKDKLLSRDFTGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIF 213 (420)
Q Consensus 144 e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~ 213 (420)
+...++.+...+.... +......++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++
T Consensus 63 ~~~~~~~i~~~i~~~~----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCCS----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444555555443322 222446799999998888876642 11235688999999999999999999
Q ss_pred HHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH---------
Q 046970 214 NQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--------- 284 (420)
Q Consensus 214 ~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--------- 284 (420)
+.....| +.+. ........ ... ....+ ...+......++.+|+||+++..
T Consensus 139 ~~~~~~~---~~i~-~~~l~~~~-~g~-~~~~~---------------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 139 SQSGATF---FSIS-ASSLTSKW-VGE-GEKMV---------------RALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HHTTCEE---EEEE-GGGGCCSS-TTH-HHHHH---------------HHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HHcCCeE---EEEe-hHHhhccc-cch-HHHHH---------------HHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 8763322 1222 21111100 000 00000 11111122356789999998432
Q ss_pred ----HHHHHHhcCCC----CCCCCcEEEeecCChhhhhh---cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHH
Q 046970 285 ----EQLIFLVGGLD----RFGPRSRIIVTTRDKQVFDE---CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVL 353 (420)
Q Consensus 285 ----~~l~~l~~~~~----~~~~g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~ 353 (420)
.....++..+. ....+..||.||.....+.. ......+.++..+.++..+++...+-.....-. .+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHH
Confidence 11222222211 11234556656654322111 134467889999999999988776633221111 245
Q ss_pred HHHHHHHhcC-ChHHHHHHHHH
Q 046970 354 SKRVVDYANG-NPLALKVLGSF 374 (420)
Q Consensus 354 ~~~i~~~~~G-~PLal~~~~~~ 374 (420)
...+++.+.| .+-.|..+...
T Consensus 276 l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 6778888888 56677766554
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.76 E-value=1.7e-08 Score=99.47 Aligned_cols=158 Identities=14% Similarity=0.185 Sum_probs=94.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccce--EEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGE--CFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~--~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
...+.|+|++|+||||||+.+++.+...++.. +++. ...+..++...+... ....+.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG--------KLNEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHcc--------cHHHHHHHh
Confidence 56789999999999999999999876654332 3333 112233333332211 123344444
Q ss_pred cCCeEEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEeecCChh---------hhhhcCCCeEEEeCCCCHHHHHHH
Q 046970 270 QQMKVFIVLDDVNKP----EQLIFLVGGLDR-FGPRSRIIVTTRDKQ---------VFDECEVDSIYEVEGLNKDESLEL 335 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~----~~l~~l~~~~~~-~~~g~~IIiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 335 (420)
..++.+|+|||++.. ...+.+...+.. ...|..||+||.+.. +...+.....+.+++++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 446779999999432 222223222111 135677888887631 222232346788999999999999
Q ss_pred HHhcccCCC-CCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 336 FSNFAFRQK-ICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 336 ~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
+.+.+.... ..++ +....|++.++|++..+.-
T Consensus 272 L~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 987763211 1122 3456788888999876553
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=5.5e-08 Score=92.83 Aligned_cols=193 Identities=11% Similarity=0.143 Sum_probs=108.4
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc--cccceEEEEeccccccccCHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS--EFEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
....++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.+.. .+...+.-.+.. ...+...+ .+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~~~~~-~~ 108 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DERGISIV-RE 108 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SCCCHHHH-TT
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cccchHHH-HH
Confidence 456799999999999988875432 23889999999999999999987642 122222111111 11122222 12
Q ss_pred HHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCe
Q 046970 245 VLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDS 320 (420)
Q Consensus 245 ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~ 320 (420)
.+....... ..... .......-..++-+|++|+++.. .....+...+.......++|++|.... +... .....
T Consensus 109 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 109 KVKNFARLT--VSKPS-KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHHHSC--CCCCC-TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHHHhhhc--ccccc-hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 222111110 00000 00011111235679999998543 333344433332335566777665442 2111 11235
Q ss_pred EEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 321 IYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 321 ~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
.+++.+++.++..+.+...+......-+ .+..+.|++.++|.|..+..
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 7899999999999999876633221111 24578899999999987543
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=6.8e-08 Score=97.22 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=101.7
Q ss_pred CCCCcccccccceeeecccccC---------------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG---------------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVRE 231 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~ 231 (420)
....++|++..+++|.+++... .+..+.+.|+|++|+||||||+.+++.+. +. .+.+. ...
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~s~ 112 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-ASD 112 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-TTS
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-CCC
Confidence 3456889998888888887531 01347899999999999999999999872 11 12222 111
Q ss_pred cccccCHHHHHHHHHHHHhhccccCCCCCc-hHHHHH--HhcCCeEEEEEeCCCCH--------HHHHHHhcCCCCCCCC
Q 046970 232 ESERVGLVHLRERVLSEILEENLKIGTLNL-PEYIKE--RLQQMKVFIVLDDVNKP--------EQLIFLVGGLDRFGPR 300 (420)
Q Consensus 232 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~--~l~~~~~LlVLDdv~~~--------~~l~~l~~~~~~~~~g 300 (420)
... ..+....+..... ...... .....+ ...+++.+|++|+++.. ..+..++.. .+
T Consensus 113 ---~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~ 179 (516)
T 1sxj_A 113 ---VRS-KTLLNAGVKNALD----NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TS 179 (516)
T ss_dssp ---CCC-HHHHHHTGGGGTT----BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CS
T ss_pred ---cch-HHHHHHHHHHHhc----cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cC
Confidence 111 1111111111111 011100 000100 11356889999999532 233333322 23
Q ss_pred cEEEeecCChh---hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCChHH-HHHH
Q 046970 301 SRIIVTTRDKQ---VFDECEVDSIYEVEGLNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGNPLA-LKVL 371 (420)
Q Consensus 301 ~~IIiTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLa-l~~~ 371 (420)
..||+++.+.. +.........+++++++.++..+++...+.... ..++ +....|++.++|.+.. +..+
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 34555544322 222223456889999999999999877664322 1121 3467888999996554 4444
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.71 E-value=2.2e-07 Score=85.44 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=98.3
Q ss_pred CCcccccccceeeec-------cccc-CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHH
Q 046970 169 TGSVGVNSRIRHIKS-------LLHL-GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVH 240 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 240 (420)
..++|....++++.. .+.. .......+.|+|++|+|||+||+.+++.....| +.+...... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHH
Confidence 346666655544443 2211 133467899999999999999999998753322 112111000 0000000
Q ss_pred HHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH------------HHHHHH---hcCCCCCCCCcEEEe
Q 046970 241 LRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP------------EQLIFL---VGGLDRFGPRSRIIV 305 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~------------~~l~~l---~~~~~~~~~g~~IIi 305 (420)
....+ ...+......++.+|+||+++.. ..++.+ .......+....||.
T Consensus 109 ~~~~~----------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 109 KCQAM----------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HHHHH----------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HHHHH----------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 00000 11122223456899999998543 122333 332222233455777
Q ss_pred ecCChhhhhh----cCCCeEEEeCCCCH-HHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC------ChHHHHHHHHH
Q 046970 306 TTRDKQVFDE----CEVDSIYEVEGLNK-DESLELFSNFAFRQKICPKDFLVLSKRVVDYANG------NPLALKVLGSF 374 (420)
Q Consensus 306 TtR~~~~~~~----~~~~~~~~l~~L~~-~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G------~PLal~~~~~~ 374 (420)
||.....+.. ......+++++++. ++..+++.... ... .+....+++.+.| ..-++..+-..
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NFK----DKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CSC----HHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CCC----HHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 7877654332 12356789999998 66666665532 111 2346778888887 34444444433
Q ss_pred hcCCChhHHHhH
Q 046970 375 FYRKSVKPEKQC 386 (420)
Q Consensus 375 L~~~~~~~~~~~ 386 (420)
........+..+
T Consensus 246 ~~~~~~~~~~~~ 257 (272)
T 1d2n_A 246 LQMDPEYRVRKF 257 (272)
T ss_dssp TTSCGGGHHHHH
T ss_pred hhhchHHHHHHH
Confidence 333333344443
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.68 E-value=2.5e-07 Score=86.13 Aligned_cols=182 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred CCCCcccccccceeeecccccC----------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc-
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG----------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER- 235 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~- 235 (420)
....++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.+++.....| +.+. .......
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~~~ 94 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTSKY 94 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSSSS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhhcc
Confidence 4567888888888887765320 12356889999999999999999998764322 1121 1111000
Q ss_pred -cCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH-------------HHHHHHhc---CCCCC-
Q 046970 236 -VGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP-------------EQLIFLVG---GLDRF- 297 (420)
Q Consensus 236 -~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~-------------~~l~~l~~---~~~~~- 297 (420)
.......+ ..+......++.+|++|+++.. .....++. .....
T Consensus 95 ~~~~~~~~~-------------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 95 VGDGEKLVR-------------------ALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp CSCHHHHHH-------------------HHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred cchHHHHHH-------------------HHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 00111111 1122222356789999998432 11112221 11111
Q ss_pred -CCCcEEEeecCChhhhhh---cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHHH
Q 046970 298 -GPRSRIIVTTRDKQVFDE---CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVLG 372 (420)
Q Consensus 298 -~~g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~ 372 (420)
+.+..||.||..+..+.. ......+.++..+.++..+++...+-....... .+....+++.+.|.+- +|..+.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 134556667765432111 124467788888888888888776532221111 2346788888999875 665554
Q ss_pred H
Q 046970 373 S 373 (420)
Q Consensus 373 ~ 373 (420)
.
T Consensus 234 ~ 234 (297)
T 3b9p_A 234 K 234 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.2e-07 Score=90.69 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=105.1
Q ss_pred CCCCcccccccceeeeccc-ccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecc---------------
Q 046970 167 DFTGSVGVNSRIRHIKSLL-HLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVR--------------- 230 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~--------------- 230 (420)
....++|.+..++.+.+++ ..+. ... +.|+|++|+|||||++.++..+...-.+.+.+....
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 4467899999999998888 5332 233 899999999999999999986532211111111000
Q ss_pred -----c--cccc-cCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCC
Q 046970 231 -----E--ESER-VGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPR 300 (420)
Q Consensus 231 -----~--~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 300 (420)
. .+.. .......++++..+..... ......+ ..+..++-++|||+++.. ...+.+...+.....+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQDSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0 0000 0000011122221111000 0000000 002346779999999653 2233343333323456
Q ss_pred cEEEeecCChh-hhhh-cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 301 SRIIVTTRDKQ-VFDE-CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 301 ~~IIiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
+.+|++|.+.. +... ......+++++++.++..+.+...+......-+ ..+.+..|++.++|.+..+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 77887777643 2111 123478999999999999999877632221111 01446788899999987665443
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.65 E-value=4.1e-07 Score=87.03 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=100.1
Q ss_pred CCCCcccccccceeeecccc----------cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLH----------LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
....++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~------ 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SS------ 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HH------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HH------
Confidence 44568888888777776552 1112245688999999999999999999874322 1111 11
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCc-hHH-HHHHhcCCeEEEEEeCCCCHH-------------HHHHHhcC---CCCCC
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNL-PEY-IKERLQQMKVFIVLDDVNKPE-------------QLIFLVGG---LDRFG 298 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~-~~~-l~~~l~~~~~LlVLDdv~~~~-------------~l~~l~~~---~~~~~ 298 (420)
.+.. .. ...... ... +......++.+|+||+++... ....++.. +....
T Consensus 119 ---~l~~----~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 ---DLVS----KW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---HHHS----CC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---HHhh----hh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 1100 00 000011 111 222223578999999996431 12223222 11113
Q ss_pred CCcEEEeecCChhhhh---hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC-ChHHHHHHH
Q 046970 299 PRSRIIVTTRDKQVFD---ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG-NPLALKVLG 372 (420)
Q Consensus 299 ~g~~IIiTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~ 372 (420)
.+..||.||..+..+. .......+.++..+.++..+++..+......... ......|++.+.| .+-.|..+.
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555666665442211 1135577889999999999999887643321111 2345778888888 555555544
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.65 E-value=2.8e-07 Score=88.52 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=104.9
Q ss_pred CCCcccccccceee---ecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHH
Q 046970 168 FTGSVGVNSRIRHI---KSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRER 244 (420)
Q Consensus 168 ~~~~vGR~~~l~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ 244 (420)
...++|++..++.+ .+.+..+....+.+.|+|++|+|||+||+.+++.+....+. +.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 46799999887664 34444443335689999999999999999999987543221 111111111112222223333
Q ss_pred HHHHHhhcc---------------------c---cC--C---C-CCc-hHHHHHHh-----cCC----eEEEEEeCCCCH
Q 046970 245 VLSEILEEN---------------------L---KI--G---T-LNL-PEYIKERL-----QQM----KVFIVLDDVNKP 284 (420)
Q Consensus 245 ll~~l~~~~---------------------~---~~--~---~-~~~-~~~l~~~l-----~~~----~~LlVLDdv~~~ 284 (420)
.+....+.. . .. . . ... ...+.+.. .++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 322211100 0 00 0 0 001 11121111 122 459999999653
Q ss_pred --HHHHHHhcCCCCCCCCcEEEeecC-C-----------h-hhh-hhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCch
Q 046970 285 --EQLIFLVGGLDRFGPRSRIIVTTR-D-----------K-QVF-DECEVDSIYEVEGLNKDESLELFSNFAFRQKICPK 348 (420)
Q Consensus 285 --~~l~~l~~~~~~~~~g~~IIiTtR-~-----------~-~~~-~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~ 348 (420)
+....+...+...... .++++|. . . .+. ........+.+++++.++..+++...+......-.
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~ 280 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMS 280 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3344454444432223 3333332 1 1 010 11112345899999999999999877643222111
Q ss_pred hHHHHHHHHHHHhc-CChHHHHHHH
Q 046970 349 DFLVLSKRVVDYAN-GNPLALKVLG 372 (420)
Q Consensus 349 ~~~~~~~~i~~~~~-G~PLal~~~~ 372 (420)
.+....+++.+. |.|..+..+.
T Consensus 281 --~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 281 --EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp --HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHH
Confidence 245778889998 8887665433
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.64 E-value=4.4e-07 Score=85.60 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=101.8
Q ss_pred CCCCcccccccceeeecccc----------cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLH----------LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
....++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.+++.....| +.+. ...
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~----- 86 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD----- 86 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHH-----
Confidence 34567777777777766551 1222346789999999999999999998764332 1111 111
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCHH-------------HHHHHh---cCCCCCCC
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKPE-------------QLIFLV---GGLDRFGP 299 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~~-------------~l~~l~---~~~~~~~~ 299 (420)
+.....+.. ... ...+......++.+|+||+++... ....++ ..+.....
T Consensus 87 --------l~~~~~g~~-----~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 87 --------LVSKWMGES-----EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --------HHTTTGGGH-----HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --------HhhcccchH-----HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 000000000 000 111222224567899999996431 122222 22222234
Q ss_pred CcEEEeecCChhhhhh---cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC-ChHHHHHHHH
Q 046970 300 RSRIIVTTRDKQVFDE---CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG-NPLALKVLGS 373 (420)
Q Consensus 300 g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~ 373 (420)
+..||.||..+..+.. ......+.++..+.++-.+++..++........ ......+++.+.| .+-.|..+..
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566667765433211 124567889999999999999987744332111 1345678888877 4656665544
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.62 E-value=3e-07 Score=86.81 Aligned_cols=178 Identities=13% Similarity=0.128 Sum_probs=95.8
Q ss_pred CCCCcc-cccccc--eeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSV-GVNSRI--RHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~v-GR~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
..++|+ |..... ..+..++.........+.|+|++|+||||||+.+++.....-...+++. ...+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----------~~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----------ADDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----------HHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----------HHHHHH
Confidence 345565 543322 2233333333223567889999999999999999998754322233443 112222
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH----HHHHHhcCCCC-CCCCcEEEeecCChh-------
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE----QLIFLVGGLDR-FGPRSRIIVTTRDKQ------- 311 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~----~l~~l~~~~~~-~~~g~~IIiTtR~~~------- 311 (420)
.+...+... ....+.+.+. ++.+|++||++... ..+.+...+.. ...+..||+||.+..
T Consensus 79 ~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 79 AMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 333222211 1222333333 36799999985432 12222221110 124557888775431
Q ss_pred --hhhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHH
Q 046970 312 --VFDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLA 367 (420)
Q Consensus 312 --~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 367 (420)
+...+.....+++++ +.++..+++...+......-+ .+....+++.+ |.+-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 122222346789999 999999999887643221111 24566788888 77654
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.62 E-value=2.8e-07 Score=90.71 Aligned_cols=177 Identities=14% Similarity=0.214 Sum_probs=101.7
Q ss_pred CCCCcccccccc---eeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRI---RHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....++|.+..+ ..|...+..+ ....+.|+|++|+||||||+.+++.....|.. +. . ...+...+ +
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-a----~~~~~~~i-r 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-A----VTSGVKEI-R 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-T----TTCCHHHH-H
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-e----ccCCHHHH-H
Confidence 456799999887 5666666543 34679999999999999999999987543321 11 1 01122221 1
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEE-eecCChhh---hhhcC
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE--QLIFLVGGLDRFGPRSRII-VTTRDKQV---FDECE 317 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~--~l~~l~~~~~~~~~g~~II-iTtR~~~~---~~~~~ 317 (420)
.++.... .....+++.+|++|+++... +.+.|+..+.. ....+| .||.+... .....
T Consensus 93 ~~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 93 EAIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHHHHH---------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC
Confidence 1111110 11123568899999996542 23333333321 223333 35555421 11122
Q ss_pred CCeEEEeCCCCHHHHHHHHHhcccCCC-----CCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 318 VDSIYEVEGLNKDESLELFSNFAFRQK-----ICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 318 ~~~~~~l~~L~~~ea~~L~~~~a~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
....+.+++++.++..+++.+..-... ....-..+..+.+++.++|.+..+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 346889999999999999987753210 111112356778888899988766543
No 44
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.61 E-value=1.7e-07 Score=89.04 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=102.9
Q ss_pred CCCCcccccccceeeecccccC---CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLG---LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRE 243 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~ 243 (420)
....++|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| +.+. .... ...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~~~----- 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---EKS----- 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---CSH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---cch-----
Confidence 4467999999999988888642 23445789999999999999999988764432 1121 1111 111
Q ss_pred HHHHHHhhccccCCCCCchHHHHHHh--cCCeEEEEEeCCCCH--HHHHHHhcCCCCC------------------CCCc
Q 046970 244 RVLSEILEENLKIGTLNLPEYIKERL--QQMKVFIVLDDVNKP--EQLIFLVGGLDRF------------------GPRS 301 (420)
Q Consensus 244 ~ll~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~g~ 301 (420)
..+...+ ..+..+|+||+++.. .....+...+... .++.
T Consensus 95 -------------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 95 -------------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -------------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -------------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111111 235678999998643 2222222211110 1134
Q ss_pred EEEeecCChhhhh---hcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 046970 302 RIIVTTRDKQVFD---ECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVLG 372 (420)
Q Consensus 302 ~IIiTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 372 (420)
.+|.+|....... .......+++++++.++..+++...+....... ..+....+++.+.|+|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTC--EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEE--CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHCcCHHHHHHHH
Confidence 5666555432211 112347899999999999999987764322111 12456788888999996665443
No 45
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.61 E-value=3.6e-07 Score=83.25 Aligned_cols=183 Identities=16% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCH
Q 046970 169 TGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGL 238 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 238 (420)
.+++|.+..++.|.+++.. +....+.+.|+|++|+|||+||+.+++.....| +.+. .........
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~- 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG- 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc-
Confidence 4566666555555443310 112346788999999999999999998764332 2222 111110000
Q ss_pred HHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH-----------------HHHHHHhcCCCCC--CC
Q 046970 239 VHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP-----------------EQLIFLVGGLDRF--GP 299 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~-----------------~~l~~l~~~~~~~--~~ 299 (420)
......+ ...+.......+.+|++|+++.. ..+..++..+... ..
T Consensus 81 -~~~~~~~---------------~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 81 -GLGAARV---------------RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -THHHHHH---------------HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -ChhHHHH---------------HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0000000 11122223346789999999754 1123333222111 23
Q ss_pred CcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHHHH
Q 046970 300 RSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVLGS 373 (420)
Q Consensus 300 g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 373 (420)
+..+|.||.....+.. ......+.++..+.++..+++..++........ .......+++.+.|.+- .|..+..
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT-HHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 4566667765432211 124567889999999999999877643222221 12234678888888754 5554443
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.60 E-value=9.1e-07 Score=87.21 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=105.5
Q ss_pred CCCCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
....++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++. +...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~~- 202 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISSS- 202 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeHH-
Confidence 457789999888888765521 1123578999999999999999999987621 12222 1100
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCchH-HHHHHhcCCeEEEEEeCCCCH-------------HHHHHHhcCCCCC---CC
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNLPE-YIKERLQQMKVFIVLDDVNKP-------------EQLIFLVGGLDRF---GP 299 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~~~-~l~~~l~~~~~LlVLDdv~~~-------------~~l~~l~~~~~~~---~~ 299 (420)
.+ .....+. ...... .+...-..++.+|+||+++.. .....++..+... ..
T Consensus 203 ---~l----~~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 203 ---DL----VSKWLGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ---HH----Hhhhcch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 00 0110110 011122 222223457899999999754 2234555554332 34
Q ss_pred CcEEEeecCChhhhhh---cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC-ChHHHHHHHH
Q 046970 300 RSRIIVTTRDKQVFDE---CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG-NPLALKVLGS 373 (420)
Q Consensus 300 g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~ 373 (420)
+..||.||..+..+.. ......+.++..+.++..+++..+......... ......|++.+.| .+-.|..+..
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666767765432211 134567889989999999999887633221111 2345678888888 4555555543
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.57 E-value=1.8e-06 Score=81.31 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=86.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh-ccccceEEEEeccccccc--cCHHHHHHHHHHHHhhccccCCCCCchHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS-SEFEGECFITNVREESER--VGLVHLRERVLSEILEENLKIGTLNLPEYIKER 268 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~v~~~~~~~~~--~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 268 (420)
.+.+.|+|++|+|||+||+.+++... ..| +.+. ....... ....... ...+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~~~~g~~~~~~-------------------~~lf~~a 101 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVSKWLGESEKLV-------------------KNLFQLA 101 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCCSSCCSCHHHH-------------------HHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHhhhhhHHHHHH-------------------HHHHHHH
Confidence 46789999999999999999998762 211 1121 1111000 0001111 1111122
Q ss_pred hcCCeEEEEEeCCCCH-------------HHHHHHhcC---CCCCCCCcEEEeecCChhhhhh---cCCCeEEEeCCCCH
Q 046970 269 LQQMKVFIVLDDVNKP-------------EQLIFLVGG---LDRFGPRSRIIVTTRDKQVFDE---CEVDSIYEVEGLNK 329 (420)
Q Consensus 269 l~~~~~LlVLDdv~~~-------------~~l~~l~~~---~~~~~~g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~ 329 (420)
-..++.+|++|+++.. .....++.. +.....+..||.||..+..+.. ......+.++..+.
T Consensus 102 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCH
T ss_pred HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCH
Confidence 2357889999999654 112223222 2112344556656654432111 13557788999999
Q ss_pred HHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC-hHHHHHHHH
Q 046970 330 DESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN-PLALKVLGS 373 (420)
Q Consensus 330 ~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 373 (420)
++..+++..+......... ......|++.+.|. +-.|..+..
T Consensus 182 ~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999887633221111 23467788888887 555665544
No 48
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.54 E-value=2.2e-07 Score=86.92 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=73.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcccc--ceEEEE-eccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFE--GECFIT-NVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKE 267 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~--~~~~v~-~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 267 (420)
....+.|+|++|+|||+||+.+++.+..... ...++. +....... .. ......+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~--------------------~~-g~~~~~~~~ 124 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQ--------------------YI-GHTAPKTKE 124 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCS--------------------ST-TCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhh--------------------cc-cccHHHHHH
Confidence 3557899999999999999999987644211 111221 11111000 00 000111111
Q ss_pred Hhc-CCeEEEEEeCCC-----------CHHHHHHHhcCCCCCCCCcEEEeecCChh----------hhhhcCCCeEEEeC
Q 046970 268 RLQ-QMKVFIVLDDVN-----------KPEQLIFLVGGLDRFGPRSRIIVTTRDKQ----------VFDECEVDSIYEVE 325 (420)
Q Consensus 268 ~l~-~~~~LlVLDdv~-----------~~~~l~~l~~~~~~~~~g~~IIiTtR~~~----------~~~~~~~~~~~~l~ 325 (420)
.+. .++.+|++|+++ ....+..|+..+.....+..+|.||.... +... ....++++
T Consensus 125 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~ 202 (309)
T 3syl_A 125 VLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFP 202 (309)
T ss_dssp HHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEEC
T ss_pred HHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcC
Confidence 111 134599999997 33444455544433345667777775432 2222 34788999
Q ss_pred CCCHHHHHHHHHhccc
Q 046970 326 GLNKDESLELFSNFAF 341 (420)
Q Consensus 326 ~L~~~ea~~L~~~~a~ 341 (420)
+++.++..+++...+.
T Consensus 203 ~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 203 DYSDEELFEIAGHMLD 218 (309)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987764
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.53 E-value=1.5e-06 Score=84.27 Aligned_cols=183 Identities=17% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCCCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
....++|.+..++.|..++.. .....+.+.|+|++|+|||+||+.+++.....| +..+........
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 188 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTSKY 188 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhccc
Confidence 456789999988888876621 112246889999999999999999988754322 222111111000
Q ss_pred --CHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH-------------HHHHHHhcCC----CCC
Q 046970 237 --GLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP-------------EQLIFLVGGL----DRF 297 (420)
Q Consensus 237 --~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~-------------~~l~~l~~~~----~~~ 297 (420)
...... ...+.......+.+|+||+++.. .....++..+ ...
T Consensus 189 ~g~~~~~~-------------------~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 189 VGEGEKLV-------------------RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ---CHHHH-------------------HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHH-------------------HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 000001 11112222345689999999643 1111222111 111
Q ss_pred CCCcEEEeecCChhhhhh---cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChH-HHHHHHH
Q 046970 298 GPRSRIIVTTRDKQVFDE---CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPL-ALKVLGS 373 (420)
Q Consensus 298 ~~g~~IIiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 373 (420)
.....||.||.....+.. ......+.++..+.++..+++...+......-. .+....+++.+.|..- +|..+..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 233456656654322111 124467889999999999999877633222111 2346788888888544 6666554
Q ss_pred H
Q 046970 374 F 374 (420)
Q Consensus 374 ~ 374 (420)
.
T Consensus 328 ~ 328 (389)
T 3vfd_A 328 D 328 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.52 E-value=1.9e-07 Score=80.06 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999888643 3456789999999999999999987644
No 51
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.49 E-value=7.4e-07 Score=84.03 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=101.8
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
....++|.+..++.+.+++..+. ...++.++|++|+|||++|+.+++.+... ...+. .. ..+.. ..+..+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~~----~~~~~-~i~~~~ 93 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-GS----DCKID-FVRGPL 93 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-TT----TCCHH-HHHTHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-cc----ccCHH-HHHHHH
Confidence 45789999999999999887442 34678889999999999999999887322 22222 11 11221 122222
Q ss_pred HHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH---HHHHHhcCCCCCCCCcEEEeecCChhhhhh--cCCCeE
Q 046970 247 SEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE---QLIFLVGGLDRFGPRSRIIVTTRDKQVFDE--CEVDSI 321 (420)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~---~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~--~~~~~~ 321 (420)
........ ..+++.++++|+++... ..+.|...+.....+.++|+||....-... ......
T Consensus 94 ~~~~~~~~--------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 94 TNFASAAS--------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHHBCC--------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHHhhcc--------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 21111100 12367899999998654 334444333322356778888765432110 012257
Q ss_pred EEeCCCCHHHHHHHH-------HhcccCCC-CCchhHHHHHHHHHHHhcCChHHHH
Q 046970 322 YEVEGLNKDESLELF-------SNFAFRQK-ICPKDFLVLSKRVVDYANGNPLALK 369 (420)
Q Consensus 322 ~~l~~L~~~ea~~L~-------~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~ 369 (420)
+++++++.++-.+++ ...+.... ..++ .+....+++.++|.+..+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 899999988843332 22221111 1111 1456778888988876443
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.44 E-value=3.6e-06 Score=78.53 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=86.3
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
.+++|.+..+++|.+++.. +....+.+.|+|++|+|||+||+.+++.....| +.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~---------- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK---------- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------
Confidence 4567777666666655431 123456899999999999999999998764321 1111
Q ss_pred HHHHHHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCHHH----------------HHHHhcCCCC--CC
Q 046970 238 LVHLRERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKPEQ----------------LIFLVGGLDR--FG 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~~~----------------l~~l~~~~~~--~~ 298 (420)
...+ .....+.. ... ...+.......+.+|++|+++.... ...++..+.. ..
T Consensus 82 ~~~l----~~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPEL----LTMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHH----HHHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHH----HhhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 1111 12222111 111 2333333445789999999964311 2223222211 12
Q ss_pred CCcEEEeecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 299 PRSRIIVTTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 299 ~g~~IIiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.+..||.||..+..+. .......+.++..+.++-.+++..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 3556777776553322 11345788999999999999887765
No 53
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.40 E-value=4.4e-06 Score=79.13 Aligned_cols=163 Identities=10% Similarity=0.072 Sum_probs=91.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCC----CCCc-hH---
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIG----TLNL-PE--- 263 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~----~~~~-~~--- 263 (420)
...+.++|++|+|||++|+.+++.+....... ....+.......+.......-.... .... .+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir 94 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVR 94 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHH
Confidence 45788999999999999999999764322100 0000000001111100000000000 0011 11
Q ss_pred HHHHHh-----cCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCeEEEeCCCCHHHHHH
Q 046970 264 YIKERL-----QQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDSIYEVEGLNKDESLE 334 (420)
Q Consensus 264 ~l~~~l-----~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~ 334 (420)
.+.+.+ .+++-++|+|+++.. +..+.|+..+....+++.+|++|.++. +.+. ......+++++++.++..+
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~ 174 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVT 174 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHH
Confidence 222222 245789999999643 445556655554456677777766553 2222 2344689999999999999
Q ss_pred HHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 335 LFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 335 L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
.+.... .. + .+.+..+++.++|.|..+..
T Consensus 175 ~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 175 WLSREV---TM-S---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 998775 11 1 13457788999999976543
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=4e-06 Score=79.61 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=100.2
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEEeccccccccCHHHHHHHHH
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFITNVREESERVGLVHLRERVL 246 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~l~~~ll 246 (420)
...++|.+..++.|...+..+ ....+.++|++|+||||+|+.+++.+... +...+.-.+ .+...+...+. +.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~~~ir-~~i 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGIDVVR-NQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHHHHH-THH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccHHHHH-HHH
Confidence 355788888888887777644 22238999999999999999999976432 211111111 11111222221 111
Q ss_pred HHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEeecCChh-hhhh-cCCCeEE
Q 046970 247 SEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRFGPRSRIIVTTRDKQ-VFDE-CEVDSIY 322 (420)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~~~g~~IIiTtR~~~-~~~~-~~~~~~~ 322 (420)
..+..... .+.+.+-++|+|+++.. ...+.|...+......+++|++|.... +... ......+
T Consensus 98 ~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 98 KDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 11111000 01234678999998532 333344333332345566776665432 1111 1233578
Q ss_pred EeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHH
Q 046970 323 EVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLAL 368 (420)
Q Consensus 323 ~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 368 (420)
++.+++.++..+.+...+-.....-+ .+..+.+++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 99999999999888766522221111 245678888999988743
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.26 E-value=2.9e-06 Score=84.32 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=100.4
Q ss_pred CCCcccccccceeeecccccC-----------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 168 FTGSVGVNSRIRHIKSLLHLG-----------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
...++|.+..+++|.+++... ....+.+.|+|++|+|||+||+.+++.....| ...+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhh
Confidence 356899999999998877532 33456789999999999999999988763222 222111110000
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCCCC
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFGPR 300 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~~g 300 (420)
....... ....+.....+++.+|+||+++.. ..+-.++.... ...+
T Consensus 279 -~g~~~~~----------------~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-~~~~ 340 (489)
T 3hu3_A 279 -AGESESN----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (489)
T ss_dssp -TTHHHHH----------------HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-TTSC
T ss_pred -cchhHHH----------------HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-cCCc
Confidence 0000000 022233334567889999998311 11222222221 1234
Q ss_pred cEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCC-hHHHHHH
Q 046970 301 SRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGN-PLALKVL 371 (420)
Q Consensus 301 ~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 371 (420)
..||.||..+.. .........+.++..+.++-.+++..++........ ....++++.+.|. +-.|..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 556666665432 221234567899999999999999887633221111 1134566666664 5555554
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.24 E-value=5.8e-07 Score=74.28 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=35.5
Q ss_pred CcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 170 GSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57888888888887765322233467899999999999999998864
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=9e-06 Score=77.98 Aligned_cols=171 Identities=18% Similarity=0.300 Sum_probs=96.5
Q ss_pred CCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc-
Q 046970 168 FTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER- 235 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~- 235 (420)
..++.|.+...++|.+.+.. +....+-+.++|+||+|||.||+++++.....| +.+. .......
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhccc
Confidence 35566777777666654421 233467789999999999999999999875543 1122 1111110
Q ss_pred c-CHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC-
Q 046970 236 V-GLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF- 297 (420)
Q Consensus 236 ~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~- 297 (420)
. ......+.+ ....-...+++|.+|+++.. ..+..++..+..+
T Consensus 223 vGese~~vr~l-------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRMVREL-------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHHHHHH-------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHH-------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 011111111 11222457899999998532 0133343333222
Q ss_pred -CCCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCC-CchhHHHHHHHHHHHhcCCh
Q 046970 298 -GPRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFAFRQKI-CPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 298 -~~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 365 (420)
..+..||.||..+.. ...-..+..++++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 234456667765443 222246788999999999999999877633221 1222 356777777753
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.22 E-value=5.3e-06 Score=88.50 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=41.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
..+.++||+.++..+.+.|... ....+.|+|++|+|||+||+.+++.+..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567999999999999988643 2345789999999999999999998743
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=8.8e-06 Score=73.89 Aligned_cols=178 Identities=17% Similarity=0.177 Sum_probs=91.0
Q ss_pred CCCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 168 FTGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..+++|.+..++++.+++.. +....+-+.|+|++|+||||||+.+++.....| +.+. ........
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~~- 85 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEMF- 85 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTSC-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHHh-
Confidence 34566666665555443221 011234588999999999999999998764322 2222 11110000
Q ss_pred HHHHHHHHHHHHhhccccCCCCCc--hHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCC--C
Q 046970 238 LVHLRERVLSEILEENLKIGTLNL--PEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDR--F 297 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~--~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~--~ 297 (420)
...... ...+.......+.++++|+++.. ..+..++..+.. .
T Consensus 86 ------------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 86 ------------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp ------------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred ------------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 000000 11222223346789999998321 122333322211 1
Q ss_pred CCCcEEEeecCChhhh-----hhcCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcC-ChHHHHHH
Q 046970 298 GPRSRIIVTTRDKQVF-----DECEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANG-NPLALKVL 371 (420)
Q Consensus 298 ~~g~~IIiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 371 (420)
..+..||.||..+... ........+.++..+.++-.+++..+.-.....++ .....++..+.| ++--|+.+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence 2345566676654322 11124567888888888888888766532211111 112456667777 77655543
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.14 E-value=9.5e-07 Score=80.86 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=84.8
Q ss_pred CCCCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
....++|.+..++.+.+.+.. +....+.+.|+|++|+|||+||+.+++.....|-. +. .......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~~- 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIEM- 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTTS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHHh-
Confidence 446788988888888775541 11223447899999999999999999976443311 10 1000000
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH-----------------HHHHHhcCCCCCC-
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE-----------------QLIFLVGGLDRFG- 298 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~-----------------~l~~l~~~~~~~~- 298 (420)
..+. ..... ...+......++.+|+||+++... .+..++..+....
T Consensus 84 ------------~~~~--~~~~~--~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 ------------FVGL--GASRV--RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp ------------CSSS--CSSSS--STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred ------------hcch--HHHHH--HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 0000 00011 222333334567899999995431 1222333332211
Q ss_pred --CCcEEEeecCChhhhh-----hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 299 --PRSRIIVTTRDKQVFD-----ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 299 --~g~~IIiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
....||.||.....+. .......+.++..+.++..+++....
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245666776553221 11234567888999999888887765
No 61
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=4.1e-05 Score=74.52 Aligned_cols=172 Identities=15% Similarity=0.241 Sum_probs=98.3
Q ss_pred CCCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccc-
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESE- 234 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~- 234 (420)
...++.|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....| +.+. ......
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~sk 282 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQK 282 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhcc
Confidence 345688888888888765421 334578899999999999999999999875543 1121 111111
Q ss_pred ccC-HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCHH----------------HHHHHhcCCCCC
Q 046970 235 RVG-LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKPE----------------QLIFLVGGLDRF 297 (420)
Q Consensus 235 ~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 297 (420)
..+ .....+.+ ....-...+++|++|+++... .+..++..+..+
T Consensus 283 ~vGesek~ir~l-------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 283 YVGEGARMVREL-------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SSSHHHHHHHHH-------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHH-------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 000 01111111 122224578999999985320 122233222211
Q ss_pred --CCCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcccCCCC-CchhHHHHHHHHHHHhcCCh
Q 046970 298 --GPRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFAFRQKI-CPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 298 --~~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 365 (420)
..+..||.||..+.. ...-..+..++++..+.++-.++|..+.-.... ...+ ...|++.+.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 234456667764433 222246788999999999999999877633221 1222 346677777753
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.11 E-value=7.1e-06 Score=81.39 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=82.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc-----cceEEEE-eccccccccCHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF-----EGECFIT-NVREESERVGLVH 240 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-----~~~~~v~-~~~~~~~~~~~~~ 240 (420)
..+.++||+.+++.+...|... ...-+.|+|++|+|||+||+.+++.+.... ....++. +..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 4467999999999999988643 234568999999999999999999874422 1111221 110
Q ss_pred HHHHHHHHHhhccccCCCC-Cc-hHHHHHHhcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhh---hh-
Q 046970 241 LRERVLSEILEENLKIGTL-NL-PEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQV---FD- 314 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~-~~-~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~---~~- 314 (420)
... .... .. ...+...-..++.+|++| ...+....|.+.+. ....++|.+|..... ..
T Consensus 246 ------~~~------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ------TKY------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------ccc------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000 0001 11 222333333567899999 22222333444443 234556655544331 00
Q ss_pred ---hcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 315 ---ECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 315 ---~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.......+.+++.+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 01122468999999999999998765
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.09 E-value=8.2e-06 Score=76.03 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.2
Q ss_pred Ccccccccceeeeccccc------------CCCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 170 GSVGVNSRIRHIKSLLHL------------GLPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.++|.+..++.+...+.. .......+.|+|++|+|||+||+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356666666655554432 011245688999999999999999998773
No 64
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=7.7e-06 Score=76.27 Aligned_cols=143 Identities=10% Similarity=0.068 Sum_probs=85.3
Q ss_pred ccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhh---ccccceEEEEeccccccccCHHHHHHHHHHHHhhc
Q 046970 176 SRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQIS---SEFEGECFITNVREESERVGLVHLRERVLSEILEE 252 (420)
Q Consensus 176 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~ 252 (420)
..++.|...+..+. .+...++|++|+||||+|+.+++... ........+... ....++..+ +++...+...
T Consensus 4 ~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~~~~ 77 (305)
T 2gno_A 4 DQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFLNYS 77 (305)
T ss_dssp CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHHTSC
T ss_pred HHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHHhhc
Confidence 34445555555443 67889999999999999999987531 112333444311 011222222 2233222111
Q ss_pred cccCCCCCchHHHHHHhcCCeEEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEeecCCh-hhhhhcCCCeEEEeCCCCH
Q 046970 253 NLKIGTLNLPEYIKERLQQMKVFIVLDDVNK--PEQLIFLVGGLDRFGPRSRIIVTTRDK-QVFDECEVDSIYEVEGLNK 329 (420)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~--~~~l~~l~~~~~~~~~g~~IIiTtR~~-~~~~~~~~~~~~~l~~L~~ 329 (420)
. ..+++-++|+|+++. ....+.|+..+....+.+.+|++|.++ .+.+..... .+++++++.
T Consensus 78 p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 78 P---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp C---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred c---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 0 023567899999864 344556665555445677777766544 344444444 899999999
Q ss_pred HHHHHHHHhcc
Q 046970 330 DESLELFSNFA 340 (420)
Q Consensus 330 ~ea~~L~~~~a 340 (420)
++..+.+....
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.07 E-value=4.2e-06 Score=71.66 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+.|+|++|+|||||++.+++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999875
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.06 E-value=1.3e-05 Score=84.45 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=86.9
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc------ccceEEEEecccccc----cc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE------FEGECFITNVREESE----RV 236 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~v~~~~~~~~----~~ 236 (420)
....++||+.+++.+.+.|... ....+.|+|++|+|||+||+.+++.+... ....++..+...... ..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 4467999999999999988754 34567899999999999999999876332 122333221111100 00
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCchHHHHHHh-cCCeEEEEEeCCCCH----------HHHHHHh-cCCCCCCCCcEEE
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNLPEYIKERL-QQMKVFIVLDDVNKP----------EQLIFLV-GGLDRFGPRSRII 304 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVLDdv~~~----------~~l~~l~-~~~~~~~~g~~II 304 (420)
..... ...+.+.+ ..++.+|++|+++.. .+...++ ..+. ....++|
T Consensus 262 ~~e~~--------------------l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I 319 (758)
T 1r6b_X 262 DFEKR--------------------FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVI 319 (758)
T ss_dssp CHHHH--------------------HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEE
T ss_pred hHHHH--------------------HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEE
Confidence 01111 11222222 235789999999644 2233333 3332 2345566
Q ss_pred eecCChhhhhh-------cCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 305 VTTRDKQVFDE-------CEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 305 iTtR~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.+|........ ......+.+++.+.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66554321100 1112468999999999998887644
No 67
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.2e-05 Score=78.11 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=89.6
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccc-ccc
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREES-ERV 236 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~-~~~ 236 (420)
.++.|.+...++|.+.+.. +....+-+.++|++|+|||+||+++++.....| +.+. ..... ...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~-~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVN-GSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEE-GGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEe-cchhhcccc
Confidence 5667888777777664431 334567899999999999999999999875433 1122 11111 000
Q ss_pred C-HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCC--C
Q 046970 237 G-LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDR--F 297 (420)
Q Consensus 237 ~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~--~ 297 (420)
+ .....+.+ +...-...++++.+|+++.. ..+..|+..+.. .
T Consensus 248 Ge~e~~ir~l-------------------F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 248 GEGPRMVRDV-------------------FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp SHHHHHHHHH-------------------HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred chhHHHHHHH-------------------HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0 11111111 11222356899999988321 112333322221 1
Q ss_pred CCCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHH-HHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCC
Q 046970 298 GPRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKD-ESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 298 ~~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~-ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~ 364 (420)
..+..||.||..+.. ......+..++++.++.. +-.++|..+.-+.. .+..+ ...+++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 234556777765433 222234567788766544 44556655543222 12222 34666777765
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=3.7e-05 Score=74.80 Aligned_cols=171 Identities=23% Similarity=0.363 Sum_probs=96.6
Q ss_pred CCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc-
Q 046970 168 FTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER- 235 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~- 235 (420)
..++.|.+..+++|.+.+.. +....+-|.++|+||+|||+||+++++.....| +..........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 35667888777777664431 234467899999999999999999999875433 22111111110
Q ss_pred cC-HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC-
Q 046970 236 VG-LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF- 297 (420)
Q Consensus 236 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~- 297 (420)
.+ .....+.+ ....-...+++|.+|+++.. ..+..|+..+..+
T Consensus 256 ~Gese~~ir~~-------------------F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIREM-------------------FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHHH-------------------HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHH-------------------HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00 01111111 11222457899999998532 0123333332211
Q ss_pred -CCCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCCh
Q 046970 298 -GPRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 298 -~~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~P 365 (420)
..+..||.||..+..++. ...+..++++..+.++-.++|..+.-+.. ....+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 234567777765544322 22456788988888888888887763322 12222 345667777653
No 69
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.6e-05 Score=75.79 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=94.1
Q ss_pred CCCcccccccceeeecccc-----------cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccc-c
Q 046970 168 FTGSVGVNSRIRHIKSLLH-----------LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESE-R 235 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~-~ 235 (420)
..++.|.+...++|.+.+. .+....+-|.++|+||+|||.||+++++.....| +......... .
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 3556677776666655432 1233467899999999999999999999865432 2211111111 0
Q ss_pred cC-HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCC
Q 046970 236 VG-LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFG 298 (420)
Q Consensus 236 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 298 (420)
.+ .....+.++ ...-...+++|.+|+++.. ..+..++..+..+.
T Consensus 256 vGese~~ir~lF-------------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 256 IGEGAKLVRDAF-------------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHH-------------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00 111111111 1112346899999998422 01233443333222
Q ss_pred --CCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCC
Q 046970 299 --PRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 299 --~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~ 364 (420)
.+..||.||..+..+.. -..+..++++..+.++-.++|..+.-+-. ....+ ...+++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 34456667765544322 23567889998898888888876653222 11222 34667777765
No 70
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.03 E-value=1e-05 Score=75.59 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=33.1
Q ss_pred cccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 171 SVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 556555555554444321 112357999999999999999999997644
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.01 E-value=3.4e-05 Score=76.15 Aligned_cols=172 Identities=14% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCcccccccceeeeccccc----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCH
Q 046970 169 TGSVGVNSRIRHIKSLLHL----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGL 238 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 238 (420)
.+++|.+..++++.+.+.. +....+-+.|+|++|+|||+||+.++......| +.+. ........ .
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~-~ 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELF-V 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCC-T
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHH-h
Confidence 4466666655555443321 111234588999999999999999998764332 1121 11111100 0
Q ss_pred HHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC--CCC
Q 046970 239 VHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF--GPR 300 (420)
Q Consensus 239 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~g 300 (420)
.. ... .....+.......+.+|+||+++.. ..+..++..+..+ ..+
T Consensus 91 g~-~~~---------------~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 91 GV-GAA---------------RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp TH-HHH---------------HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred cc-cHH---------------HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 00 000 0022333444567899999998432 1233343322111 235
Q ss_pred cEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCCCC-chhHHHHHHHHHHHhcCCh
Q 046970 301 SRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQKIC-PKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 301 ~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 365 (420)
..||.||..+..+.. ......+.++..+.++-.+++..+.-..... ... ...+++.+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 567777766544321 1345688899989888888887665322211 111 234666677766
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.96 E-value=5.5e-05 Score=74.73 Aligned_cols=50 Identities=26% Similarity=0.220 Sum_probs=37.7
Q ss_pred CCCcccccccceeeeccc---ccCCCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 168 FTGSVGVNSRIRHIKSLL---HLGLPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...++|.+..++.+..++ ..+....+.+.++|++|+|||+||+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 367999998877654433 33333346788999999999999999998764
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.95 E-value=1.8e-05 Score=83.31 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=83.0
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccc------cceEEEEeccccccccCHHH
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEF------EGECFITNVREESERVGLVH 240 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~~~ 240 (420)
..+.++||+.+++.+...|... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 4467999999999999988653 234578999999999999999999863321 111111100
Q ss_pred HHHHHHHHHhhccccCCCCC-c-hHHHHHHhcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhh---hh
Q 046970 241 LRERVLSEILEENLKIGTLN-L-PEYIKERLQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVF---DE 315 (420)
Q Consensus 241 l~~~ll~~l~~~~~~~~~~~-~-~~~l~~~l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~---~~ 315 (420)
+... ....+ . ...+......++.+|++| ...+....+.+.+. ....++|.||...... ..
T Consensus 245 ----------g~~~-~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ----------GTKY-RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----------cccc-cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000 00111 1 233333344678899999 22233333444443 2345666665543310 00
Q ss_pred ----cCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 316 ----CEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 316 ----~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
......+.+++.+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0122568999999999999998654
No 74
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.87 E-value=6.4e-06 Score=68.30 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=28.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
....++|+|++|+|||||++.++......-....++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3568999999999999999999997654311255554
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.86 E-value=1.2e-05 Score=73.41 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=34.3
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+.++|.+..+.++.+.+..-......+.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5688988888877765543222235678999999999999999998654
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.85 E-value=6.1e-05 Score=69.79 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.++.+.|+|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678899999999999999999987443
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.85 E-value=0.00012 Score=69.18 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCcccccccceeeecccccC---CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLG---LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERV 245 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~l 245 (420)
..++|.+..++.+...+... ......++|+|++|+||||||+.+++.+...+. ... .... .....+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~~--~~~~~l---- 93 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPVL--VKQGDM---- 93 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTTC--CSHHHH----
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chHh--cCHHHH----
Confidence 45777776666665555421 123467899999999999999999998743321 111 0000 000111
Q ss_pred HHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCCC--------C----------CCcEEE-
Q 046970 246 LSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDRF--------G----------PRSRII- 304 (420)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~~--------~----------~g~~II- 304 (420)
..+...+ .++.++++|+++.. ...+.+...+... + +...++
T Consensus 94 -----------------~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 94 -----------------AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------------HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------------HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 0011111 13346777877432 2222222111000 0 112222
Q ss_pred eecCChhhhhh--cCCCeEEEeCCCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCChHHHHHH
Q 046970 305 VTTRDKQVFDE--CEVDSIYEVEGLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNPLALKVL 371 (420)
Q Consensus 305 iTtR~~~~~~~--~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 371 (420)
.|++...+... ........+++.+.++..+++.+.+-.....- ..+.+..|++.+.|.|..+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~--~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI--EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHhcCCChHHHHHH
Confidence 34443322111 12334688999999999999987763222111 1255788999999999765433
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00014 Score=69.98 Aligned_cols=169 Identities=20% Similarity=0.273 Sum_probs=94.0
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc-c
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER-V 236 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~-~ 236 (420)
.++.|.+...++|.+.+.. +....+-|.++|++|.|||.||+++++.....| +..+....... .
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccC
Confidence 4566777777777664421 223467899999999999999999999875543 11111111110 0
Q ss_pred -CHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCC--
Q 046970 237 -GLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRF-- 297 (420)
Q Consensus 237 -~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~-- 297 (420)
......+.+ ....-...+++|.+|+++.. ..+..++..+..+
T Consensus 258 Gesek~ir~l-------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 258 GDGPRLCRQI-------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp SHHHHHHHHH-------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHH-------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 011111111 11122356899999987421 1122333222211
Q ss_pred CCCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcccCCCC-CchhHHHHHHHHHHHhcCC
Q 046970 298 GPRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFAFRQKI-CPKDFLVLSKRVVDYANGN 364 (420)
Q Consensus 298 ~~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~~~G~ 364 (420)
..+..||.||..+..++. -..+..++++.-+.++-.++|..+.-.... ...+ ...+++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 234456667765544332 134567888888888888898877633221 1222 34666777665
No 79
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.83 E-value=2.5e-05 Score=68.02 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.6
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.+.|+|++|+|||+||+.+++....+....+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68899999999999999999998766544555554
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.79 E-value=2.8e-05 Score=81.27 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=96.1
Q ss_pred CCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccc-cc
Q 046970 168 FTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREES-ER 235 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~-~~ 235 (420)
...+.|.+..+++|.+.+.. +...++-|.++|++|+|||+||+.+++....+| +.+. ..... ..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hHHhhccc
Confidence 35678899888888775431 223467899999999999999999998764432 2222 11100 00
Q ss_pred cC-HHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH-------------HHHHHHhcCCCCC--CC
Q 046970 236 VG-LVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP-------------EQLIFLVGGLDRF--GP 299 (420)
Q Consensus 236 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~ 299 (420)
.+ ....+ ...+.......+++|++|+++.. ..+..|+..+..+ ..
T Consensus 279 ~gese~~l-------------------r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 279 AGESESNL-------------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TTHHHHHH-------------------HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred chHHHHHH-------------------HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 00 00001 12222233457899999998432 1122333222111 12
Q ss_pred CcEEEeecCChhhh-----hhcCCCeEEEeCCCCHHHHHHHHHhcccCCC-CCchhHHHHHHHHHHHhcCCh
Q 046970 300 RSRIIVTTRDKQVF-----DECEVDSIYEVEGLNKDESLELFSNFAFRQK-ICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 300 g~~IIiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~~~G~P 365 (420)
+..||.||.....+ ........++++..+.++-.++|..+.-... ....+ ...+++.+.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 33455566544332 2123567889999999999999987763322 11222 345667777663
No 81
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.76 E-value=1.5e-05 Score=74.40 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=37.2
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358888888888877765422334568899999999999999998864
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=2.2e-06 Score=70.61 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=33.4
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
-.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357888888888877765321223457899999999999999987654
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.65 E-value=0.00018 Score=75.99 Aligned_cols=152 Identities=20% Similarity=0.293 Sum_probs=87.3
Q ss_pred CCCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccc
Q 046970 167 DFTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESER 235 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~ 235 (420)
....++|.+..+++|.+++.. .......+.|+|++|+||||||+.++......| +.+. .......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh
Confidence 346789999999999887753 223456899999999999999999998764432 2222 1110000
Q ss_pred cCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCCC
Q 046970 236 VGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFGP 299 (420)
Q Consensus 236 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~~ 299 (420)
........ + ...+.......+.++++|+++.. ..+..++..... ..
T Consensus 278 -~~g~~~~~-l---------------~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 278 -LAGESESN-L---------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp -STTHHHHH-H---------------HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred -hhhhHHHH-H---------------HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 00000000 0 11122222346789999998321 122233333321 23
Q ss_pred CcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 300 RSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 300 g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
+..+|.||..+..+.. ......+.+...+.++-.+++..++
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4556666665432221 1244667888999999999998766
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.58 E-value=0.00011 Score=77.33 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=81.6
Q ss_pred CCcccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHH
Q 046970 169 TGSVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHL 241 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l 241 (420)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++.....-...+.+. +..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 46889888887777666421 112337999999999999999999998643322233333 22222111100
Q ss_pred HHHHHHHHhhccccCCCCCc-hHHHHHHhcCCeEEEEEeCCCCH--HHHHHHhcCCCC-----------CCCCcEEEeec
Q 046970 242 RERVLSEILEENLKIGTLNL-PEYIKERLQQMKVFIVLDDVNKP--EQLIFLVGGLDR-----------FGPRSRIIVTT 307 (420)
Q Consensus 242 ~~~ll~~l~~~~~~~~~~~~-~~~l~~~l~~~~~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~g~~IIiTt 307 (420)
... ...++ .....+|+||+++.. +....|+..+.. ...+.+||+||
T Consensus 568 -----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 001 12222 123458999999543 223333322110 12356788888
Q ss_pred CCh-----------------hhhhhcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 308 RDK-----------------QVFDECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 308 R~~-----------------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
... .+.. ....++.+.+|+.++..+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 731 1111 234688999999999988886654
No 85
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=0.00073 Score=67.03 Aligned_cols=145 Identities=13% Similarity=0.145 Sum_probs=77.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhc--
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQ-- 270 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~-- 270 (420)
+-+.|+|++|+||||||+.++..... ..+.+. ........ .... ...+...++
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~~-~g~~--------------------~~~v~~lfq~a 119 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVG--------------------AARVRDLFETA 119 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSSC-TTHH--------------------HHHHHHHTTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHhh-hhhH--------------------HHHHHHHHHHH
Confidence 34899999999999999999987642 222232 11111100 0000 111222222
Q ss_pred --CCeEEEEEeCCCCH----------------HHHHHHhcCCCCC--CCCcEEEeecCChhhhhh-----cCCCeEEEeC
Q 046970 271 --QMKVFIVLDDVNKP----------------EQLIFLVGGLDRF--GPRSRIIVTTRDKQVFDE-----CEVDSIYEVE 325 (420)
Q Consensus 271 --~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~g~~IIiTtR~~~~~~~-----~~~~~~~~l~ 325 (420)
..+.++++|+++.. ..+..++..+..+ ..+..++.||..+..+.. ......+.++
T Consensus 120 ~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~ 199 (499)
T 2dhr_A 120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199 (499)
T ss_dssp SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECC
T ss_pred HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecC
Confidence 23589999998421 1233444332211 233456666766654332 1345688999
Q ss_pred CCCHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh
Q 046970 326 GLNKDESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 326 ~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 365 (420)
..+.++-.+++..++-.....+.. ....++..+.|+.
T Consensus 200 ~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 200 APDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp CCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred CCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 999999999998776322111110 1234555666654
No 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=0.0016 Score=59.47 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=68.0
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHH-hcCCe
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKER-LQQMK 273 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-l~~~~ 273 (420)
++|+|++|+||||||+.++..... ..+.+.. ...... ......+ .+ ..+.+. -...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g-~~l~~~-~~~~~~~-~i----------------~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKG-PELLNM-YVGESER-AV----------------RQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEET-TTTCSS-TTHHHHH-HH----------------HHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEc-HHHHhh-hhhHHHH-HH----------------HHHHHHHHhcCC
Confidence 899999999999999999987643 2233331 111100 0111111 11 111111 13357
Q ss_pred EEEEEeCCCCH-------------HHHHHHhcCCCC--CCCCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHH
Q 046970 274 VFIVLDDVNKP-------------EQLIFLVGGLDR--FGPRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESL 333 (420)
Q Consensus 274 ~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~ 333 (420)
.++++|+++.. .....++..+.. .....-++.+|..+.++.. ......+.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 88899988532 011222222211 1123345567766655432 246678899999999999
Q ss_pred HHHHhcc
Q 046970 334 ELFSNFA 340 (420)
Q Consensus 334 ~L~~~~a 340 (420)
+++..+.
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998765
No 87
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.55 E-value=6.8e-05 Score=65.97 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=27.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
....++.|+|.+|+|||||+..++. ..-..++|+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 3567999999999999999999988 2224566665
No 88
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.49 E-value=0.00086 Score=60.43 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=74.7
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh-cCCe
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL-QQMK 273 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-~~~~ 273 (420)
+.|+|++|+|||||++.++..... ..+.+.. ....... ...... ....+.+.. ...+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~-~~~~~~~-~~~~~~-----------------~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEMF-VGVGAA-----------------RVRDLFETAKRHAP 109 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHSC-TTHHHH-----------------HHHHHHHHHTTSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH-HHHHHHH-hhHHHH-----------------HHHHHHHHHHhcCC
Confidence 889999999999999999987642 2223320 0000000 000000 011122222 2356
Q ss_pred EEEEEeCCCCH----------------HHHHHHhcCCCCC--CCCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHH
Q 046970 274 VFIVLDDVNKP----------------EQLIFLVGGLDRF--GPRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKD 330 (420)
Q Consensus 274 ~LlVLDdv~~~----------------~~l~~l~~~~~~~--~~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ 330 (420)
.++++|+++.. ..+..++..+... .....++.||..+..+.. ......++++..+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 189 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHH
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHH
Confidence 89999998321 0122333222111 122334556665554322 235678899999999
Q ss_pred HHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh
Q 046970 331 ESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 331 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 365 (420)
+-.+++..++-......+ .....+++.+.|+-
T Consensus 190 ~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 190 GREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 888888766522211111 11345666677654
No 89
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.47 E-value=0.00047 Score=64.81 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 56899998888877766543 368899999999999999999876443
No 90
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.42 E-value=0.0011 Score=60.65 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=75.4
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh-cCCe
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL-QQMK 273 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-~~~~ 273 (420)
+.|+|++|+|||||++.++..... ..+.+.. ....... ...... ....+.+.. ...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~-~~~~~~~-~~~~~~-----------------~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEMF-VGVGAA-----------------RVRDLFETAKRHAP 133 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHST-TTHHHH-----------------HHHHHHHHHHTSCS
T ss_pred EEEECCCcChHHHHHHHHHHHcCC---CEEEecH-HHHHHHH-hhHHHH-----------------HHHHHHHHHHhcCC
Confidence 889999999999999999987642 2233321 0000000 000000 011122222 2356
Q ss_pred EEEEEeCCCCH----------------HHHHHHhcCCCCCC--CCcEEEeecCChhhhh-----hcCCCeEEEeCCCCHH
Q 046970 274 VFIVLDDVNKP----------------EQLIFLVGGLDRFG--PRSRIIVTTRDKQVFD-----ECEVDSIYEVEGLNKD 330 (420)
Q Consensus 274 ~LlVLDdv~~~----------------~~l~~l~~~~~~~~--~g~~IIiTtR~~~~~~-----~~~~~~~~~l~~L~~~ 330 (420)
.++++|+++.. ..+..++..+.... ....++.||..+..+. .......++++..+.+
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 213 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHH
Confidence 89999998421 11233333222111 1233445666554432 1235568899999999
Q ss_pred HHHHHHHhcccCCCCCchhHHHHHHHHHHHhcCCh
Q 046970 331 ESLELFSNFAFRQKICPKDFLVLSKRVVDYANGNP 365 (420)
Q Consensus 331 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 365 (420)
+-.+++..++-......+. ....+++.+.|+.
T Consensus 214 ~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 214 GREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred HHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 8888887665222111111 1345667777765
No 91
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.41 E-value=0.00022 Score=71.97 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....++|+|++|+||||||+.++......
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45689999999999999999999887443
No 92
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.31 E-value=0.00032 Score=67.29 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+.|+|++|+|||+||+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998773
No 93
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.21 E-value=0.0027 Score=54.50 Aligned_cols=112 Identities=19% Similarity=0.097 Sum_probs=59.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHh----hccccCCC---------C
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEIL----EENLKIGT---------L 259 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~----~~~~~~~~---------~ 259 (420)
..|.|++..|.||||+|..++-+...+-..+.++.-.... ...+-..+.+.+. +. +....... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHHH
Confidence 4566777777999999999998876654455555322211 1122223333320 00 00000000 0
Q ss_pred Cc-hHHHHHHhcCC-eEEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEeecCCh
Q 046970 260 NL-PEYIKERLQQM-KVFIVLDDVN--------KPEQLIFLVGGLDRFGPRSRIIVTTRDK 310 (420)
Q Consensus 260 ~~-~~~l~~~l~~~-~~LlVLDdv~--------~~~~l~~l~~~~~~~~~g~~IIiTtR~~ 310 (420)
.. ...+++.+.+. -=|||||++. +.+.+-.++... .....||+|+|+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 01 33445555544 4599999872 334444444433 3667899999986
No 94
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.18 E-value=0.0035 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.++|+|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.18 E-value=0.00016 Score=67.02 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999886
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.18 E-value=0.00044 Score=62.79 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=64.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhc-cccCCCCCchHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEE-NLKIGTLNLPEYIKERL 269 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~l 269 (420)
...+++|+|++|.|||||++.+...+...+.+.+.+....-........ .+..+ ............+.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--------~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--------SIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--------SEEEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--------eeeeHHHhCCCHHHHHHHHHHHH
Confidence 4579999999999999999999987655434555544211000000000 00000 00111111256677777
Q ss_pred cCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhh
Q 046970 270 QQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQV 312 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~ 312 (420)
..++-+|++|...+.+....++... ..|.-|++||.+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 7788899999997666655444332 246668888877543
No 97
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.17 E-value=0.00012 Score=69.50 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=66.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceE-EEEeccccccccCHHHHHHHHHHHHhhccc-cCCCCCchHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGEC-FITNVREESERVGLVHLRERVLSEILEENL-KIGTLNLPEYIKERL 269 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~-~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~l~~~l 269 (420)
..+++|+|+.|.|||||.+.+...+.......+ .+.+..+...... .....+.. ........+.+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~---------~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK---------KCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS---------SSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc---------ccceeeeeeccccCCHHHHHHHHh
Confidence 459999999999999999999987655433333 2221111100000 00000000 111112266888999
Q ss_pred cCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChhhh
Q 046970 270 QQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQVF 313 (420)
Q Consensus 270 ~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~~~ 313 (420)
...+=+|++|...+.+.++.+.... ..|..+|+|+.+....
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999999998877766554432 2466689999877654
No 98
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.14 E-value=0.00022 Score=75.09 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCcccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 169 TGSVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45888888887776655421 1123578999999999999999999877
No 99
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.01 E-value=0.00087 Score=71.44 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred CcccccccceeeecccccC-------CCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 170 GSVGVNSRIRHIKSLLHLG-------LPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 170 ~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.++|.+..++.+...+... ......+.|+|++|+|||+||+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789888888876665421 112358899999999999999999987643
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.99 E-value=0.0015 Score=60.85 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=28.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh-ccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS-SEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~v~ 227 (420)
...+.|+|++|+|||+||..+++... ..-..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46788999999999999999999876 5433445554
No 101
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.95 E-value=0.02 Score=53.83 Aligned_cols=155 Identities=10% Similarity=-0.037 Sum_probs=93.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh-ccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS-SEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERL 269 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 269 (420)
-.++..++|+.|.||++.+..+...+. ..|+....+. .. ...++..+...+-. .-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~-------------------~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQA-------------------MSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHH-------------------HHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcC-------------------cCC
Confidence 356899999999999999999998764 3343211111 11 12333333322211 112
Q ss_pred cCCeEEEEEeCCCC---HHHHHHHhcCCCCCCCCcEEEeecCC-------hhhhhh-cCCCeEEEeCCCCHHHHHHHHHh
Q 046970 270 QQMKVFIVLDDVNK---PEQLIFLVGGLDRFGPRSRIIVTTRD-------KQVFDE-CEVDSIYEVEGLNKDESLELFSN 338 (420)
Q Consensus 270 ~~~~~LlVLDdv~~---~~~l~~l~~~~~~~~~g~~IIiTtR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~ 338 (420)
.+++-++|+|+++. ....+.|...+....+++.+|+++.+ ..+... ......++..+++.++..+.+..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35667889999865 24455555555444567777766543 123333 23457889999999999988877
Q ss_pred cccCCCCCchhHHHHHHHHHHHhcCChHHHHH
Q 046970 339 FAFRQKICPKDFLVLSKRVVDYANGNPLALKV 370 (420)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 370 (420)
.+-.....-+ .+.+..+++.++|.+..+..
T Consensus 154 ~~~~~g~~i~--~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNLELD--DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTCEEC--HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCCCCC--HHHHHHHHHHhchHHHHHHH
Confidence 6633221111 24567888888988877664
No 102
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.92 E-value=0.0032 Score=59.59 Aligned_cols=49 Identities=31% Similarity=0.258 Sum_probs=36.0
Q ss_pred eeeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 179 RHIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 179 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..|...|. .+-+...++.|+|++|+|||||+.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34445554 34445789999999999999999999987655434566776
No 103
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.0033 Score=56.96 Aligned_cols=25 Identities=40% Similarity=0.328 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|.|++|.|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998755
No 104
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.88 E-value=0.003 Score=56.34 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||++.++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999998754
No 105
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.82 E-value=0.0033 Score=55.74 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=36.6
Q ss_pred hHHHHHHhcCCeEEEEEeCCC---CHHHHHHHhcC-CCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 262 PEYIKERLQQMKVFIVLDDVN---KPEQLIFLVGG-LDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~---~~~~l~~l~~~-~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
.-.+.+.+..++-+++||+.. +......+... +.....+..||++|++...... .++++.+
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l 202 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 202 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh--CCEEEEE
Confidence 445666777888899999873 23333333332 2222346678999998766543 4555544
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.69 E-value=0.00072 Score=64.71 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=64.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEE-EeccccccccCHHHHHHHHHHHHhhc-cccCCCCCchHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI-TNVREESERVGLVHLRERVLSEILEE-NLKIGTLNLPEYIKER 268 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v-~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~ 268 (420)
...+++|+|++|.|||||++.+...+.....+.+.+ .+.-+....... .+..+ ............++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeecCCCHHHHHHHHHHH
Confidence 457899999999999999999998765543344433 211000000000 00000 0011111126678888
Q ss_pred hcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 269 LQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 269 l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
+...+-+|++|.+.+.+.+...+... ..|..+|.|+....
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 88888899999998777665544332 24666888887654
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.65 E-value=0.00087 Score=56.68 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.6
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 108
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.64 E-value=0.0015 Score=58.94 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998754
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.63 E-value=0.0006 Score=60.18 Aligned_cols=36 Identities=17% Similarity=-0.210 Sum_probs=28.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
...++.|+|.+|+||||++..++++...+-..+..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 357899999999999999999999876654444444
No 110
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.62 E-value=0.0031 Score=58.27 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.9
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccc--cceEEEE
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEF--EGECFIT 227 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~v~ 227 (420)
++.|+|++|+|||||+.+++......+ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999998765542 4567776
No 111
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.58 E-value=0.0026 Score=66.55 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccC
Q 046970 169 TGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVG 237 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 237 (420)
..+.|.+...++|.+.+.. +....+-+.++|++|.|||.||+++++.....| +. ++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~----v~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS----IK---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE----CC----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE----ec----
Confidence 4556776666666554431 112356688999999999999999999764432 22 10
Q ss_pred HHHHHHHHHHHHhhccccCCCCCc-hHHHHHHh-cCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCC-
Q 046970 238 LVHLRERVLSEILEENLKIGTLNL-PEYIKERL-QQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFG- 298 (420)
Q Consensus 238 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~- 298 (420)
.. .+++...+ ..+. ...+.+.. ...+++|++|+++.. ..+..|+..+....
T Consensus 544 ~~----~l~s~~vG------ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 GP----ELLTMWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HH----HHHTTTCS------SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred cc----hhhccccc------hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 01 11111111 1111 22233333 457899999998431 01333443332222
Q ss_pred -CCcEEEeecCChhh-----hhhcCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 299 -PRSRIIVTTRDKQV-----FDECEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 299 -~g~~IIiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.+.-||.||..+.. +..-.....+.++.-+.++-.++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 23334445554332 2222456788888777777777887665
No 112
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.54 E-value=0.00054 Score=72.37 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=79.7
Q ss_pred CCCcccccccceeeeccccc-----------CCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEecccccccc
Q 046970 168 FTGSVGVNSRIRHIKSLLHL-----------GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERV 236 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~ 236 (420)
...++|.+...+.|.+.+.. +......+.++|++|+|||+||+.++......|-. +. .......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l~~~- 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPELLTM- 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSSTTC-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHhhhh-
Confidence 34567777766666554431 11235678899999999999999999987543311 11 1000000
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCc-hHHHHHHh-cCCeEEEEEeCCCCH----------------HHHHHHhcCCCCCC
Q 046970 237 GLVHLRERVLSEILEENLKIGTLNL-PEYIKERL-QQMKVFIVLDDVNKP----------------EQLIFLVGGLDRFG 298 (420)
Q Consensus 237 ~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 298 (420)
-...... ...+.+.. ...+.++++|+++.. ..+..++..+....
T Consensus 551 ------------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 551 ------------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ------------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred ------------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 0000011 11122221 224578889987431 12355555554322
Q ss_pred --CCcEEEeecCChhhhhh-----cCCCeEEEeCCCCHHHHHHHHHhcc
Q 046970 299 --PRSRIIVTTRDKQVFDE-----CEVDSIYEVEGLNKDESLELFSNFA 340 (420)
Q Consensus 299 --~g~~IIiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~a 340 (420)
.+..||.||..+..+.. -.....+.++..+.++-.+++..+.
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 23345556654332221 1234567788888889889988766
No 113
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.51 E-value=0.015 Score=53.36 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=36.6
Q ss_pred hHHHHHHhcCCeEEEEEeCCC---CHHHHHHHhcC-CCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 262 PEYIKERLQQMKVFIVLDDVN---KPEQLIFLVGG-LDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~---~~~~l~~l~~~-~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
.-.+.+.+..++-+++||... +...-..+... +.....|..||++|.+...... .+.++.+
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~--~d~i~~l 231 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 231 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--SSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 445666777888899999873 23333333332 2222346679999998776543 4455544
No 114
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.50 E-value=0.004 Score=59.73 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45799999999999999999998643
No 115
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.49 E-value=0.0045 Score=58.47 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=33.7
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc------cccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS------EFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~v~ 227 (420)
|..+|..+-+...++.|+|.+|+||||||.+++..... .-..++|+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44445434456789999999999999999999986422 223566776
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.48 E-value=0.0014 Score=54.83 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.46 E-value=0.013 Score=54.29 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+++|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887654
No 118
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.45 E-value=0.0031 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|++|.|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998875
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.45 E-value=0.0013 Score=57.42 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|.|++|.|||||++.++..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999987653
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.0016 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....|.|+|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999876
No 121
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.42 E-value=0.0077 Score=56.12 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=35.2
Q ss_pred cceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 177 RIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 177 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
-+..|..++ .+-....++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 54 G~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 54 GFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 344444444 34445679999999999999999999977644335566665
No 122
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.38 E-value=0.012 Score=55.86 Aligned_cols=50 Identities=34% Similarity=0.304 Sum_probs=35.8
Q ss_pred ceeeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 178 IRHIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 178 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+..|..+|. .+-+...++.|+|.+|+||||||.+++......-..++|++
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 334444454 23344678999999999999999999987654444677776
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.38 E-value=0.0022 Score=60.14 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc------ccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE------FEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------f~~~~~v~ 227 (420)
|..+|..+-+...++.|+|.+|+||||||.+++...... -..++|+.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 334443333346799999999999999999999865322 23567776
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.34 E-value=0.0019 Score=55.22 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|+|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 125
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.33 E-value=0.0028 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998765
No 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.32 E-value=0.002 Score=54.82 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+.|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.28 E-value=0.0012 Score=62.96 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+.|+|++|+|||++|+.+++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999998763
No 128
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.27 E-value=0.005 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+|.|.|+||+||+|.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999998865
No 129
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.26 E-value=0.0034 Score=54.27 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998876
No 130
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.24 E-value=0.0022 Score=54.79 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
++++|.|++|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765443
No 131
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.23 E-value=0.0024 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|.|.+|+|||||++.+...+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999987643
No 132
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.22 E-value=0.0044 Score=52.83 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
..|.|.|++|+||||+|+.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 133
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.22 E-value=0.0019 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988753
No 134
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.22 E-value=0.0016 Score=55.75 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=23.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4688999999999999999988765444
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.21 E-value=0.0039 Score=58.57 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=61.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhcccc-C--CCCCchHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLK-I--GTLNLPEYIKER 268 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~--~~~~~~~~l~~~ 268 (420)
...++|+|++|.|||||++.++..+.. ..+.+.+.+..+..... . ..... . ........+...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-H------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-C------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-c------------hhEEEEEeCCChhHHHHHHHH
Confidence 458999999999999999999876544 24566665432211000 0 00000 0 122226778888
Q ss_pred hcCCeEEEEEeCCCCHHHHHHHhcCCCCCCCCc-EEEeecCChh
Q 046970 269 LQQMKVFIVLDDVNKPEQLIFLVGGLDRFGPRS-RIIVTTRDKQ 311 (420)
Q Consensus 269 l~~~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~-~IIiTtR~~~ 311 (420)
|..++-+|+||++.+.+.++.+ ..+. .|. -+|+|+....
T Consensus 237 L~~~p~ilildE~~~~e~~~~l-~~~~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFY-NVLC---SGHKGTLTTLHAGS 276 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHH-HHHH---TTCCCEEEEEECSS
T ss_pred hhhCCCEEEEcCCChHHHHHHH-HHHh---cCCCEEEEEEcccH
Confidence 8888999999999775544433 2322 232 3677776544
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.20 E-value=0.0033 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0027 Score=56.57 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=32.0
Q ss_pred cccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 183 SLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 183 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.|..+-....++.|.|.+|+||||||.+++......-..++|+.
T Consensus 14 ~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 14 EILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 333333334679999999999999999999876544434566665
No 138
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.19 E-value=0.0027 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 139
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.17 E-value=0.0028 Score=53.03 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.++|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998763
No 140
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.17 E-value=0.0055 Score=52.14 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...++.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999988754
No 141
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.17 E-value=0.0034 Score=56.04 Aligned_cols=37 Identities=32% Similarity=0.293 Sum_probs=27.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh-ccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS-SEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~v~ 227 (420)
...+++|.|++|+|||||++.++.... ..-..+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 467999999999999999999985322 2233455554
No 142
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.17 E-value=0.0025 Score=53.32 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=18.7
Q ss_pred eEEEEeccCcchHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAI 212 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~ 212 (420)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 143
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.15 E-value=0.0027 Score=53.89 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 144
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.14 E-value=0.01 Score=55.71 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=35.8
Q ss_pred cccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 173 GVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 173 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|...-...|..++. +-....++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 33333444444443 3345679999999999999999999987654333455554
No 145
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.12 E-value=0.003 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|+|++|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 146
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.12 E-value=0.0029 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|+|++|+|||||++.++.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4578999999999999999999987643
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.11 E-value=0.0024 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.10 E-value=0.0032 Score=55.41 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=28.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+++|.|++|+|||||++.++......-..+.|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4568999999999999999999976544323445554
No 149
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.06 E-value=0.0033 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=23.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.+|.|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987753
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.05 E-value=0.0034 Score=55.25 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhc------cccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISS------EFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~v~ 227 (420)
....+++|+|++|+|||||++.++..... .-...+|+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 35679999999999999999999875432 123466665
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.01 E-value=0.0029 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+.|.|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.00 E-value=0.0042 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|++|.|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999988764
No 153
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.99 E-value=0.0044 Score=57.95 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.4
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
|..+|..+-+...++.|+|.+|+|||+||.+++...
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444333456899999999999999999999763
No 154
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.98 E-value=0.0068 Score=50.83 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++++|.|.+|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999887654
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.004 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.9
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.++.|.|++|+||||||+.++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999875
No 156
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.96 E-value=0.0046 Score=62.03 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=28.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
....+++|.|.+|+|||||++.++......-..++++.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34679999999999999999999986654322234443
No 157
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0061 Score=54.25 Aligned_cols=47 Identities=32% Similarity=0.371 Sum_probs=31.6
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHh-hccccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI-SSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~f~~~~~v~ 227 (420)
|.++|..+-+...++.|.|.+|+|||+||.+++... ...-..++++.
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 334444333456799999999999999999987653 33334455554
No 158
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.93 E-value=0.0032 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.93 E-value=0.0049 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 160
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.92 E-value=0.0097 Score=56.25 Aligned_cols=48 Identities=29% Similarity=0.316 Sum_probs=35.0
Q ss_pred eeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 180 HIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.|..+|. .+-+..+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444454 33345679999999999999999999987655444567776
No 161
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.92 E-value=0.029 Score=54.77 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=26.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGEC 224 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 224 (420)
.+.++|+|.+|+|||||+..++.....++...+
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 346889999999999999999987665443333
No 162
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.92 E-value=0.0042 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.4
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0047 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 164
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.90 E-value=0.0033 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999988763
No 165
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.90 E-value=0.0046 Score=55.57 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+|+|.|++|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999988654
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.89 E-value=0.005 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998865
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.89 E-value=0.0041 Score=55.21 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=32.5
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc------cccceEEEE
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS------EFEGECFIT 227 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~v~ 227 (420)
|..+|..+-....++.|+|++|+|||||+..++..... .-..++|+.
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 33344333334679999999999999999999985322 124567776
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.88 E-value=0.0044 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|+|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 169
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.88 E-value=0.0038 Score=57.48 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+|+|.|.+|+||||||+.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4679999999999999999999887654
No 170
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.87 E-value=0.0047 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 171
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.86 E-value=0.0034 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=18.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988753
No 172
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.84 E-value=0.0035 Score=53.21 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.6
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+|+|.|++|+||||+|+.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999875
No 173
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.84 E-value=0.0047 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998764
No 174
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.012 Score=58.87 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|+|++|+|||||.+.++..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999998864
No 175
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.83 E-value=0.0083 Score=52.12 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=24.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..+|+|.|++|+||||+++.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987543
No 176
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.82 E-value=0.0059 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.81 E-value=0.0047 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 178
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.80 E-value=0.0057 Score=52.98 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=24.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...|+|.|++|+||||+|+.++..+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3589999999999999999999987543
No 179
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.77 E-value=0.0043 Score=52.23 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.5
Q ss_pred CceEEEEeccCcchHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAI 212 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~ 212 (420)
...+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999963
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.76 E-value=0.0043 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+|.|.|++|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999875
No 181
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.76 E-value=0.0051 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998654
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.75 E-value=0.0052 Score=53.41 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|+|++|+|||||++.+...+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456999999999999999999988653
No 183
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.75 E-value=0.0063 Score=52.76 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988753
No 184
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.75 E-value=0.0064 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|+.|.|||||++.++..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998865
No 185
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.74 E-value=0.0062 Score=50.56 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45799999999999999999999876
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.74 E-value=0.013 Score=55.48 Aligned_cols=48 Identities=33% Similarity=0.364 Sum_probs=35.1
Q ss_pred eeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 180 HIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 180 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.|..+|. .+-+..+++.|.|.+|+||||||.+++......-..++|++
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444444 33345679999999999999999999987655444677776
No 187
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.74 E-value=0.034 Score=52.80 Aligned_cols=30 Identities=20% Similarity=-0.001 Sum_probs=25.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
..+.++|+|.+|+|||||++.+++.+..+.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 467899999999999999999998775543
No 188
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.034 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|+|++|+|||||.+.++..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4679999999999999999998864
No 189
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.73 E-value=0.0058 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...|.|.|++|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998876
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.73 E-value=0.0073 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+|+|.|++|+||||+|+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 191
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.72 E-value=0.0055 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|.|++|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 192
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.71 E-value=0.0056 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 193
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.69 E-value=0.01 Score=54.93 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=28.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+++|+|++|+|||||++.++..+... .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 46799999999999999999999876543 3344443
No 194
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.68 E-value=0.0073 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 195
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.67 E-value=0.0041 Score=53.73 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=28.5
Q ss_pred ceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 178 IRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 178 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+..+..++.. .+....+.|+|++|+||||+|..+++.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444442 223446899999999999999999988754
No 196
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.67 E-value=0.0049 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+.++|+|++|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999987653
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.66 E-value=0.0072 Score=51.03 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|.|++|+||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987643
No 198
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.66 E-value=0.023 Score=57.60 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|++|.|||||++.++..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346799999999999999999988643
No 199
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.65 E-value=0.0064 Score=50.63 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 200
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.65 E-value=0.0076 Score=52.29 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
..+|+|.|++|+||||+++.++..+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.64 E-value=0.0055 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.+|+|+|++|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 202
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.64 E-value=0.018 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999988744
No 203
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.64 E-value=0.0067 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 204
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.63 E-value=0.012 Score=54.41 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=28.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...+++|+|++|+|||||++.++..+... .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 46799999999999999999999876543 3344443
No 205
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0068 Score=52.14 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+|+|+|++|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
No 206
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.61 E-value=0.034 Score=56.58 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=67.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc-----cc-ceEEEEeccccccccCHHHHH--------------HHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE-----FE-GECFITNVREESERVGLVHLR--------------ERVLSEIL 250 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~-~~~~v~~~~~~~~~~~~~~l~--------------~~ll~~l~ 250 (420)
...+++|.|++|+|||||++.++..+... +. ...++..-........+.... .+++..+.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 35699999999999999999999754321 11 122332111010111222221 11222221
Q ss_pred hccc---cCCCCCc----hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcC
Q 046970 251 EENL---KIGTLNL----PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECE 317 (420)
Q Consensus 251 ~~~~---~~~~~~~----~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~ 317 (420)
-... ....+.. .-.+.+.|..++-+|+||.-.+ . ..+..++..+.. ..|..||++|.+...+...
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~- 538 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV- 538 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence 1111 1111221 4466777888899999997622 2 223333322210 1356789999987766543
Q ss_pred CCeEEEe
Q 046970 318 VDSIYEV 324 (420)
Q Consensus 318 ~~~~~~l 324 (420)
.+.++.+
T Consensus 539 adrv~vl 545 (607)
T 3bk7_A 539 SDRLIVF 545 (607)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 3455544
No 207
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.60 E-value=0.0067 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.540 Sum_probs=22.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+|+|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997743
No 208
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.58 E-value=0.0092 Score=52.30 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...++|.|.|+||+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998865
No 209
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.57 E-value=0.0079 Score=55.92 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....+++|.|++|+|||||++.++..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 35689999999999999999999986643
No 210
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.55 E-value=0.029 Score=54.87 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=43.0
Q ss_pred cccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEEeccccccccCHHHHHHHHHHH
Q 046970 173 GVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFITNVREESERVGLVHLRERVLSE 248 (420)
Q Consensus 173 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~l~~~ll~~ 248 (420)
|...-+..|..++ .+-....++.|.|.+|+||||||..++...... -..++|+. ...+...+...++..
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCS 251 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 3333344454555 344456799999999999999999999876543 23456654 123344555555543
No 211
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.54 E-value=0.0076 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...++.|.|++|+||||+|+.+..++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 212
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.53 E-value=0.0069 Score=53.26 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|+|++|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999998764
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.52 E-value=0.0058 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998865
No 214
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.51 E-value=0.029 Score=56.21 Aligned_cols=132 Identities=18% Similarity=0.223 Sum_probs=67.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc-----cc-ceEEEEeccccccccCHHHHHHHH----------HHHHhhc--
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE-----FE-GECFITNVREESERVGLVHLRERV----------LSEILEE-- 252 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----f~-~~~~v~~~~~~~~~~~~~~l~~~l----------l~~l~~~-- 252 (420)
...+++|+|++|+|||||++.++...... +. ...++..-........+....... ...+...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG 390 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 35699999999999999999999754321 11 123332111111112222222211 1111110
Q ss_pred --cc---cCCCCCc----hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcC
Q 046970 253 --NL---KIGTLNL----PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECE 317 (420)
Q Consensus 253 --~~---~~~~~~~----~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~ 317 (420)
.. ....+.- .-.+.+.|..++-+|+||.-.+ . ..+..++..+.. ..|..||++|.+...+...
T Consensus 391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vsHd~~~~~~~- 468 (538)
T 1yqt_A 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV- 468 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence 00 0111111 3466777888899999997632 2 223333322210 1355688899987766543
Q ss_pred CCeEEEe
Q 046970 318 VDSIYEV 324 (420)
Q Consensus 318 ~~~~~~l 324 (420)
++.++.+
T Consensus 469 ~drv~vl 475 (538)
T 1yqt_A 469 SDRLMVF 475 (538)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 3455544
No 215
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.50 E-value=0.0025 Score=60.11 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 167 DFTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 167 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
....++|.+.....+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456889887544432222211 223488999999999999999998764
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.48 E-value=0.0022 Score=63.68 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+.++|.+..++.+...+..+ ..+.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45889988887776666533 4788999999999999999988663
No 217
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.47 E-value=0.0079 Score=54.06 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|+|.|++|+|||||++.++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999875
No 218
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.47 E-value=0.0034 Score=56.15 Aligned_cols=26 Identities=19% Similarity=-0.017 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....|+|.|++|+||||+|+.+++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.47 E-value=0.0072 Score=52.30 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.+++|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 220
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.47 E-value=0.0079 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 221
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.45 E-value=0.013 Score=53.89 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=29.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcccc-ceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFE-GECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~v~ 227 (420)
....+++|.|.+|+|||||++.++..+..... .+.|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34679999999999999999999987654422 344554
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.45 E-value=0.034 Score=53.94 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=25.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...++.++|++|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877554
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.45 E-value=0.0088 Score=53.77 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...++.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988763
No 224
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.44 E-value=0.0059 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.5
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 225
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.41 E-value=0.0074 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...|.|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998865
No 226
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.40 E-value=0.03 Score=54.93 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred cceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 177 RIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 177 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
-+..|...+ .+-....++.|.|.+|+|||||+..++...... -..++|+.
T Consensus 189 G~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 189 GFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 333444444 233456799999999999999999999876543 23456654
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.39 E-value=0.017 Score=54.12 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....+++|+|++|+|||||++.++..++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 357899999999999999999999876543
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.37 E-value=0.01 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+|.|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999998765
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.37 E-value=0.016 Score=54.79 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=27.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
...+++|+|++|+|||||++.++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 46899999999999999999999876543 333444
No 230
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.36 E-value=0.009 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998863
No 231
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0077 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.064 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...|.|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 232
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.35 E-value=0.028 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|.|+|++|+||||+|+.++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988754
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.35 E-value=0.019 Score=53.52 Aligned_cols=37 Identities=22% Similarity=0.140 Sum_probs=28.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
...++++|+|.+|+||||++..++..+...-..+.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568999999999999999999998776543333333
No 234
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.33 E-value=0.0086 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 235
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.33 E-value=0.0032 Score=59.21 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
....+.|+|++|+||||+++.++..+...|
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345688999999999999999998765444
No 236
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.30 E-value=0.024 Score=55.41 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=35.1
Q ss_pred ccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 176 SRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 176 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.-+..|..++. +-....++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 182 TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 182 SGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33344444442 4445679999999999999999999987655433455554
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.30 E-value=0.05 Score=52.81 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+.+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877654
No 238
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.30 E-value=0.017 Score=53.71 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+.++|+|+|-||+||||.+..++.-+...-..+.-++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999887766544455554
No 239
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.30 E-value=0.023 Score=60.48 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.9
Q ss_pred CceEEEEeccCcchHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIF 213 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~ 213 (420)
...+++|+|++|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999984
No 240
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.26 E-value=0.0093 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998876
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.25 E-value=0.15 Score=49.48 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=25.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++|.++|.+|+||||++..++..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887654
No 242
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.25 E-value=0.0098 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
++++|+|.+|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999876543
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.24 E-value=0.0086 Score=51.31 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+++|+|++|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998764
No 244
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.22 E-value=0.014 Score=59.46 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+....++|+|++|.|||||++.+..-+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 356799999999999999999987643
No 245
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.20 E-value=0.0086 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...|+|+|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998763
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.18 E-value=0.0091 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..|.|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 247
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.16 E-value=0.0071 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=17.1
Q ss_pred CceEEEEeccCcchHHHHHHHHH-HHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIF-NQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~-~~~ 216 (420)
...+++|+|++|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999998 654
No 248
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.16 E-value=0.079 Score=53.54 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+++.|+|.+|.||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999876554
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.13 E-value=0.021 Score=56.07 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
....+++|+|.+|+|||||++.++..+... .+.+++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 356899999999999999999999877543 3445554
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.11 E-value=0.0093 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|+|++|+|||||.+.++.-+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 346799999999999999999988643
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.09 E-value=0.019 Score=52.84 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987753
No 252
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.08 E-value=0.014 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+++|.|++|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999988765
No 253
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.07 E-value=0.016 Score=53.97 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....+++|.|++|+|||||++.+...+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34679999999999999999999877653
No 254
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.06 E-value=0.013 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred EEEEeccCcchHHHHHHHHHHHhh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
+|+|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988753
No 255
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.05 E-value=0.013 Score=59.45 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....++|+|++|.|||||++.+...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999988764
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.04 E-value=0.011 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.. .+++|+|++|.|||||.+.++.-+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 799999999999999999998754
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.04 E-value=0.018 Score=52.53 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...++.|+|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999976543
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.99 E-value=0.012 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.5
Q ss_pred cccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 183 SLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 183 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+|..+-+...++.|+|++|+|||||+..++...
T Consensus 122 ~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 122 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444344457899999999999999999999876
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.99 E-value=0.024 Score=47.83 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.++++|.|.+|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.93 E-value=0.0088 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||.+.++.-+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999988643
No 261
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.92 E-value=0.014 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.91 E-value=0.011 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|+|++|+|||||.+.++.-+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999988643
No 263
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.91 E-value=0.014 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 264
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.89 E-value=0.016 Score=50.56 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 265
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.88 E-value=0.016 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...|.|.|++|+||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 266
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.86 E-value=0.011 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|+|++|.|||||.+.++..+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4569999999999999999998875543
No 267
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.83 E-value=0.011 Score=60.10 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
+....++|+|++|.|||||++.+...
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34679999999999999999988764
No 268
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.82 E-value=0.01 Score=54.55 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+|+|.|..|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 269
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.82 E-value=0.012 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|+|++|+|||||++.++..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 356799999999999999999988643
No 270
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.82 E-value=0.015 Score=52.83 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=37.0
Q ss_pred hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 262 PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
.-.+.+.|..++-+|+||.... . ..+..++..+. ..|..||++|.+.........+.++.+
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC--CSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 4455666777888999998632 2 23444444443 246779999998776544223444444
No 271
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.81 E-value=0.016 Score=51.40 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|.|++|+||||+++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 272
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.80 E-value=0.016 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.7
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998763
No 273
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.80 E-value=0.053 Score=57.60 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
+...+++|+|++|.|||||.+.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3467999999999999999998864
No 274
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.79 E-value=0.016 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 275
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=94.74 E-value=0.014 Score=45.13 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCcccEEecCccccccCcchHHHHHHHhhCCCceeeeCCCCCCCcchHHHHHHhhhcceeEEEecccccccCC
Q 046970 9 KGRYDVFLSFRGEDTRDNFTSHLFAALRQKRIKIFIDEEANRGDEISLALLNAIEGSKISIVIFSKNYASSSG 81 (420)
Q Consensus 9 ~~~~dvfis~~~~d~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~s~w 81 (420)
..+|.+||||+.+|. .+.|...|.+.|+. |.| +.|+.|.++|++.+++-+.|.|
T Consensus 2 ~~~~~lFISh~~~d~----~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~w 55 (111)
T 1eiw_A 2 TAEIRLYITEGEVED----YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDE 55 (111)
T ss_dssp CCCEEEEECCCCSHH----HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHH
T ss_pred CceEEEEEecccHhH----HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChH
Confidence 357999999999982 44555555555664 333 5678999999999999889999
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.73 E-value=0.015 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999998643
No 277
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.72 E-value=0.031 Score=51.40 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877654
No 278
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.72 E-value=0.016 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.++.|+|++|+||||||..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.72 E-value=0.019 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+|+|.|++|+||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998865
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.72 E-value=0.012 Score=51.19 Aligned_cols=24 Identities=42% Similarity=0.182 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..+++|.|++|.|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999875
No 281
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.72 E-value=0.014 Score=52.68 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....+++|.|++|.|||||.+.++.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345799999999999999999998643
No 282
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.71 E-value=0.06 Score=53.50 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=31.2
Q ss_pred CCCCceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 188 GLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 188 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
+-....++.|.|.+|+||||||.+++.....+ -..++|+.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34456799999999999999999999877554 33566665
No 283
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.70 E-value=0.028 Score=49.28 Aligned_cols=33 Identities=15% Similarity=-0.166 Sum_probs=25.1
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
.|.+.|.||+||||+|..++.....+-..+.++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 477899999999999999998875543334343
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.69 E-value=0.016 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|+|++|.|||||.+.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999874
No 285
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.68 E-value=0.023 Score=53.81 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....+|+|+|.+|+|||||+..++..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999887644
No 286
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.67 E-value=0.043 Score=48.45 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.66 E-value=0.013 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||++.++.-+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999988643
No 288
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.66 E-value=0.014 Score=66.51 Aligned_cols=47 Identities=34% Similarity=0.374 Sum_probs=35.1
Q ss_pred eecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 181 IKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 181 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|..+|. .+-...+.+.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444444 33345789999999999999999999987665545667776
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.64 E-value=0.014 Score=52.07 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|+|++|.|||||.+.++.-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999864
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.63 E-value=0.012 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999988643
No 291
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.60 E-value=0.014 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||++.++.-+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999998643
No 292
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.59 E-value=0.034 Score=47.32 Aligned_cols=26 Identities=23% Similarity=0.020 Sum_probs=22.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999888877643
No 293
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.58 E-value=0.038 Score=49.51 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367889999999999999999998766
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.58 E-value=0.15 Score=49.55 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+|+|+|.+|+||||++..++..+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999876544
No 295
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.57 E-value=0.015 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||++.++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999998754
No 296
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.57 E-value=0.044 Score=47.58 Aligned_cols=109 Identities=15% Similarity=0.020 Sum_probs=53.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc--cCCCCCchHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL--KIGTLNLPEYIKER 268 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~l~~~ 268 (420)
...+..++|..|.||||.+...+.+...+-..++.+.-. ...+.+.. .+.+.+..... .... ...+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~--~d~R~ge~----~i~s~~g~~~~a~~~~~---~~~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC--IDNRYSEE----DVVSHNGLKVKAVPVSA---SKDIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSS---GGGGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec--cCCcchHH----HHHhhcCCeeEEeecCC---HHHHHHH
Confidence 357889999999999999999998876554334443311 01111222 22233211111 1111 1122222
Q ss_pred hcCCeEEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEeecCChh
Q 046970 269 LQQMKVFIVLDDVN--KPEQLIFLVGGLDRFGPRSRIIVTTRDKQ 311 (420)
Q Consensus 269 l~~~~~LlVLDdv~--~~~~l~~l~~~~~~~~~g~~IIiTtR~~~ 311 (420)
+.++--+|++|.+. +.++++.+.... ..+..||+|.++..
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 33334499999872 234443332211 24678999998643
No 297
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.56 E-value=0.012 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.53 E-value=0.016 Score=52.70 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=36.8
Q ss_pred hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhhcCCCeEEEe
Q 046970 262 PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDECEVDSIYEV 324 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~~~~~~~~~l 324 (420)
.-.+.+.|-.++-+|+||+... . ..+..++..+.. ..|..||++|.+...+.. .+.++.|
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~g~tviivtHd~~~~~~--~d~v~~l 229 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE-WASRTVLLITQQLSLAER--AHHILFL 229 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT-TTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 4556677788889999998632 2 223333333321 136678999998776543 4555555
No 299
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.52 E-value=0.012 Score=57.21 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
.+-+.++|++|+||||+|+.++..+...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3458899999999999999999876443
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.51 E-value=0.016 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999988643
No 301
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.51 E-value=0.015 Score=54.21 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.++|.|+|+.|+|||||+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998753
No 302
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.51 E-value=0.071 Score=46.44 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...|.|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999987654
No 303
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.49 E-value=0.024 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++.|.|+.|+||||||..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999875
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.48 E-value=0.02 Score=52.80 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=24.9
Q ss_pred CCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 188 GLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 188 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.-+...+++|+|++|.|||||++.+...+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34456799999999999999999998765
No 305
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.47 E-value=0.016 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||++.++.-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999988643
No 306
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.46 E-value=0.019 Score=51.74 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=26.9
Q ss_pred eecccccCCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 181 IKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 181 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+..+|....+....+.|+|++|.|||.+|..+++..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 444555332334579999999999999999999853
No 307
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.46 E-value=0.16 Score=49.47 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=35.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc-cceEEEEeccccccccCHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF-EGECFITNVREESERVGLVHLRERVLS 247 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~l~~~ll~ 247 (420)
..+.++|.|.+|+|||+|+..+++.+.... +.++++ .+++. ...+.++.+.+..
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGER--TREGNDLYHEMIE 206 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCC--HHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCc--chHHHHHHHHhhh
Confidence 456889999999999999999998764432 334443 33332 2334555555544
No 308
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.46 E-value=0.038 Score=51.00 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..++|+|+|-||+||||+|..++..+...-..++.++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4688999999999999999999988766533444444
No 309
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.46 E-value=0.022 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 310
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.45 E-value=0.033 Score=48.42 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
....++|+|.+|+|||||+..+.......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 35789999999999999999999876444
No 311
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.44 E-value=0.044 Score=57.54 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
+..++++|+|++|.|||||.+.++.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35679999999999999999998863
No 312
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.43 E-value=0.02 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.++++|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999999865
No 313
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.033 Score=48.64 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...|+|+|.+|+|||||+..++......
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 5678899999999999999999875433
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.41 E-value=0.018 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.121 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 315
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.35 E-value=0.092 Score=51.49 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=23.6
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
.+.|.|.+|.|||+++..++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999998775543
No 316
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.33 E-value=0.041 Score=49.60 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=27.3
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
++|+|.|-||+||||+|..++..+..+-..++.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57788999999999999999998765533445544
No 317
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.31 E-value=0.034 Score=51.21 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999987765433344443
No 318
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.30 E-value=0.018 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||.+.++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998653
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.28 E-value=0.022 Score=48.47 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.-.++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998753
No 320
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.27 E-value=0.014 Score=59.57 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=38.1
Q ss_pred CCCcccccccceeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 168 FTGSVGVNSRIRHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 168 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 356888888777777666633 488999999999999999999876443
No 321
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.23 E-value=0.044 Score=50.06 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=27.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.++|+|.|-||+||||+|..++..+...-..++.++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999988765433344443
No 322
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.20 E-value=0.069 Score=49.76 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=26.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
..++...|-||+||||+|..++..+...-..+.-+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 46777789999999999999998776553334333
No 323
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.15 E-value=0.024 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-.++|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.12 E-value=0.049 Score=61.30 Aligned_cols=53 Identities=30% Similarity=0.314 Sum_probs=37.5
Q ss_pred cccceeeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 175 NSRIRHIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 175 ~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..-..+|..+|. .+-....++.|.|.+|+||||||.+++......-..++|+.
T Consensus 714 ~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 333444555554 33445679999999999999999999987765434566665
No 325
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.09 E-value=0.53 Score=47.08 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=39.8
Q ss_pred eEEEEEeCCCCHH-----H----HHHHhcCCCCCCCCcEEEeecCChh--hhh---hcCCCeEEEeCCCCHHHHHHHHH
Q 046970 273 KVFIVLDDVNKPE-----Q----LIFLVGGLDRFGPRSRIIVTTRDKQ--VFD---ECEVDSIYEVEGLNKDESLELFS 337 (420)
Q Consensus 273 ~~LlVLDdv~~~~-----~----l~~l~~~~~~~~~g~~IIiTtR~~~--~~~---~~~~~~~~~l~~L~~~ea~~L~~ 337 (420)
.++||+|++.+.- . +..+...-. ..|.++|++|..+. ... .......+.+..-+..++..++-
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR--a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR--AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT--TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh--hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4799999997542 1 333333222 46888888887654 211 11245567788888999988874
No 326
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.09 E-value=0.014 Score=56.18 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=32.7
Q ss_pred eeeecccccCCCCceEEEEeccCcchHHHHHHHHHHHhhc------cccceEEEE
Q 046970 179 RHIKSLLHLGLPDFRIVGIWGMGGIGKTTFAGAIFNQISS------EFEGECFIT 227 (420)
Q Consensus 179 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~f~~~~~v~ 227 (420)
..|..+|..+-....++.|+|++|+|||||+..++-.... .-..++|+.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3344455434445679999999999999999988743221 123467776
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.03 E-value=0.026 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.256 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998743
No 328
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.02 E-value=0.029 Score=53.51 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=24.6
Q ss_pred CCCCceEEEEeccCcchHHHHHHHHHHHh
Q 046970 188 GLPDFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 188 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.+...+++|+|++|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34456799999999999999999999754
No 329
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.99 E-value=0.025 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....+++|+|++|.|||||++.++.-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 35679999999999999999998764
No 330
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.98 E-value=0.042 Score=51.58 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|+|.+|+|||||.+.+...+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4679999999999999999999876543
No 331
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.98 E-value=0.062 Score=52.59 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=35.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc-cccceEEEEeccccccccCHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS-EFEGECFITNVREESERVGLVHLRERVLS 247 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~l~~~ll~ 247 (420)
..+.++|.|.+|+|||+|+.++++.+.. +-+.++++ .+++. .....++.+.+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGER--TREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCC--SHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccC--cHHHHHHHHhhhc
Confidence 4567899999999999999999998644 33444544 34332 2234555555543
No 332
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.96 E-value=0.076 Score=46.75 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 333
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.95 E-value=0.083 Score=46.79 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=28.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
...|.|.|+.|+||||+++.++..+... +..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4689999999999999999999987553 44344443
No 334
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.94 E-value=0.092 Score=46.06 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998765
No 335
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.93 E-value=0.03 Score=52.77 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45699999999999999999998743
No 336
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.93 E-value=0.028 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.++|+|++|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 337
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.91 E-value=0.045 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998753
No 338
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.90 E-value=0.028 Score=53.09 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998643
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.89 E-value=0.035 Score=45.22 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 340
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.85 E-value=0.034 Score=45.98 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999976
No 341
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.84 E-value=0.031 Score=52.89 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=33.7
Q ss_pred hHHHHHHhcCCeEEEEEeCCCC---H---HHHHHHhcCCCCCCCCcEEEeecCChhhhhh
Q 046970 262 PEYIKERLQQMKVFIVLDDVNK---P---EQLIFLVGGLDRFGPRSRIIVTTRDKQVFDE 315 (420)
Q Consensus 262 ~~~l~~~l~~~~~LlVLDdv~~---~---~~l~~l~~~~~~~~~g~~IIiTtR~~~~~~~ 315 (420)
.-.+.+.|..++-+|++|...+ . ..+..++..+.. ..|..||++|.+......
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~-~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHH
Confidence 5567778888999999998632 2 223333332211 136779999998776554
No 342
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.81 E-value=0.035 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 343
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.77 E-value=0.032 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45799999999999999999998743
No 344
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.76 E-value=0.032 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45799999999999999999998743
No 345
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.75 E-value=0.025 Score=47.77 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEeccCcchHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~ 214 (420)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 346
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.75 E-value=0.043 Score=59.17 Aligned_cols=22 Identities=23% Similarity=-0.029 Sum_probs=20.3
Q ss_pred ceEEEEeccCcchHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIF 213 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~ 213 (420)
.++++|+|++|.|||||.+.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5799999999999999999983
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.75 E-value=0.025 Score=49.95 Aligned_cols=26 Identities=31% Similarity=0.147 Sum_probs=22.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHH
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....+++|.|+.|+|||||++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34679999999999999999988765
No 348
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.71 E-value=0.044 Score=51.56 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
....+++|+|.+|+|||||+..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999876543
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.034 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998743
No 350
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.70 E-value=0.11 Score=45.30 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=26.6
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcc-ccceEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSE-FEGECFI 226 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~v 226 (420)
..|.+-|+.|+||||+++.+++.+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 578999999999999999999987554 3234443
No 351
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.69 E-value=0.073 Score=47.11 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=25.7
Q ss_pred EEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
|+|.|-||+||||+|..++..+...-..++.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999998866544444554
No 352
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.63 E-value=0.039 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=22.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998753
No 353
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.62 E-value=0.066 Score=53.37 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+|.++|++|.||||+|+.++..+.-.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35689999999999999999999876433
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.60 E-value=0.034 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEeccCcchHHHHHHHHHHHh
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.+|+|++|.|||||+..++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999987754
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.58 E-value=0.035 Score=52.42 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998643
No 356
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.58 E-value=0.072 Score=50.23 Aligned_cols=28 Identities=29% Similarity=0.276 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
+..+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999976543
No 357
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.57 E-value=0.07 Score=51.61 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=25.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877654
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.55 E-value=0.037 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+++|.|++|+|||||.+.++.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4579999999999999999999864
No 359
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.54 E-value=0.035 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998653
No 360
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.45 E-value=0.072 Score=52.73 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
..++|+|+|.+|+||||++..++..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999876554
No 361
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.44 E-value=0.047 Score=51.83 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...++|+|.+|.|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999988654
No 362
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.44 E-value=0.068 Score=60.21 Aligned_cols=51 Identities=31% Similarity=0.311 Sum_probs=37.7
Q ss_pred cceeeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 177 RIRHIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 177 ~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
-+..|..+|. .+-+..+++.|+|.+|+||||||.+++......-..++|++
T Consensus 367 Gi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3444555554 33445789999999999999999999987665555677776
No 363
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.44 E-value=0.042 Score=55.14 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|+|++|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3578999999999999999999998754
No 364
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.38 E-value=0.039 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 365
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.38 E-value=0.041 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 366
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.35 E-value=0.044 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
-.++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998875
No 367
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.35 E-value=0.049 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.+-+.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467889999999999999999874
No 368
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.34 E-value=0.11 Score=49.03 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+++.+.|-||+||||+|..++..+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998776
No 369
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.33 E-value=0.082 Score=45.27 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=26.4
Q ss_pred eEEEEe-ccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIW-GMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
++|+|+ +-||+||||+|..++..+..+-..++.++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 67999999999999998766534455554
No 370
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.32 E-value=0.04 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45699999999999999999998743
No 371
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.32 E-value=0.039 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999863
No 372
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.21 E-value=0.45 Score=48.34 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+.+.|.|.+|.||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998887654
No 373
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.14 E-value=0.087 Score=60.17 Aligned_cols=57 Identities=28% Similarity=0.287 Sum_probs=40.9
Q ss_pred cccccccceeeecccc-cCCCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 171 SVGVNSRIRHIKSLLH-LGLPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 171 ~vGR~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+...-...|..+|. .+-+...++.|+|++|+||||||.+++......-..++|++
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444555666665 34445789999999999999999999988765544667776
No 374
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.12 E-value=0.23 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....++|+|+.|.|||||++.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 4679999999999999999988764
No 375
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.10 E-value=0.043 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998865
No 376
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.09 E-value=0.16 Score=43.63 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=26.7
Q ss_pred EEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
.|+|=|.-|+||||.++.+++.+..+-..+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3678899999999999999998876644444443
No 377
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.08 E-value=0.047 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5779999999999999999864
No 378
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.07 E-value=0.049 Score=44.55 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 379
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.07 E-value=0.052 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=23.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
.+|.|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 380
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.05 E-value=0.12 Score=48.26 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=28.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+++.+.|-||+||||+|..++..+...-..++.++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889999999999999999987765533444443
No 381
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.04 E-value=0.05 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998864
No 382
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.96 E-value=0.092 Score=45.41 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=24.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhcccc
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFE 221 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~ 221 (420)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865544
No 383
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.95 E-value=0.052 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 384
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.93 E-value=0.051 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 385
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.93 E-value=0.047 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 386
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.062 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998864
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.91 E-value=0.056 Score=44.18 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.1
Q ss_pred EEEeccCcchHHHHHHHHHHH
Q 046970 195 VGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 195 v~I~G~gGiGKTtLa~~~~~~ 215 (420)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 388
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.88 E-value=0.051 Score=45.26 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999874
No 389
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.87 E-value=0.037 Score=54.87 Aligned_cols=28 Identities=4% Similarity=-0.060 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+|.+.|++|+||||+|+.++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998853
No 390
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.86 E-value=0.15 Score=47.99 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...++...|-||+||||+|..++..+...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 45677778999999999999999876554
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.86 E-value=0.051 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999874
No 392
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.85 E-value=0.067 Score=44.20 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.6
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
--|+|+|.+|+|||||...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4588999999999999999875
No 393
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.84 E-value=0.099 Score=51.42 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=24.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEF 220 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f 220 (420)
..+|.++|++|.||||+++.++..+...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45788999999999999999998765433
No 394
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.83 E-value=0.055 Score=44.37 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 395
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.83 E-value=0.055 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.82 E-value=0.052 Score=44.64 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEeccCcchHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~ 214 (420)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 397
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.81 E-value=0.054 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.9
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988864
No 398
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.77 E-value=0.055 Score=50.97 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+++|.|.+|+|||||.+.++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999999987644
No 399
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.75 E-value=0.11 Score=50.30 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhcc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSE 219 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 219 (420)
...+++|+|+.|.|||||.+.+...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45689999999999999999999876543
No 400
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.74 E-value=0.12 Score=49.17 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=28.6
Q ss_pred CCceEEEEec-cCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 190 PDFRIVGIWG-MGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 190 ~~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
...++|+|+| -||+||||+|..++..+...-..++.++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3567888875 8999999999999988766533455554
No 401
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.72 E-value=0.08 Score=43.93 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 402
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.70 E-value=0.058 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999999864
No 403
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.68 E-value=0.2 Score=48.48 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=48.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhcccc---ceEEEEeccccccccCHHHHHHHHHHHHhhccc----cCCCCCc---
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFE---GECFITNVREESERVGLVHLRERVLSEILEENL----KIGTLNL--- 261 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~~--- 261 (420)
.+.++|.|.+|+|||+|+.++++....+.+ ..+.+..+++. ...+.++.+.+...=..... ...+...
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR--~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT--FEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC--HHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC--cHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 456789999999999999999887654222 23333333322 23344555554332101111 1111111
Q ss_pred ------hHHHHHHhc---CCeEEEEEeCCC
Q 046970 262 ------PEYIKERLQ---QMKVFIVLDDVN 282 (420)
Q Consensus 262 ------~~~l~~~l~---~~~~LlVLDdv~ 282 (420)
.-.+.++++ ++.+||++||+.
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 123455554 579999999983
No 404
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.68 E-value=0.059 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998874
No 405
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.67 E-value=0.07 Score=44.26 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999763
No 406
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.63 E-value=0.07 Score=46.16 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
....|+|+|.+|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998753
No 407
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.63 E-value=0.051 Score=44.53 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.5
Q ss_pred EEEEeccCcchHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~ 214 (420)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.62 E-value=0.061 Score=44.09 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 409
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.62 E-value=0.058 Score=44.28 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999999863
No 410
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.62 E-value=0.057 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEeccCcchHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~ 214 (420)
-|+|+|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 411
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.61 E-value=0.06 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.6
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999885
No 412
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.57 E-value=0.062 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45789999999999999998874
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.55 E-value=0.059 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999873
No 414
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.50 E-value=0.068 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988754
No 415
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.47 E-value=0.063 Score=45.35 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
.--|+|+|.+|+|||||.+.+......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 345789999999999999766655433
No 416
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.47 E-value=0.04 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
....++|+|.+|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998764
No 417
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.47 E-value=0.065 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999874
No 418
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.45 E-value=0.022 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
...+++|+|.+|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 419
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.44 E-value=0.032 Score=50.27 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
....|+|.|..|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999998887653
No 420
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.44 E-value=0.067 Score=44.01 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999763
No 421
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.39 E-value=0.074 Score=59.22 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
....|+|+|..|.|||||++.+..-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4578999999999999999988764
No 422
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.37 E-value=0.067 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999999873
No 423
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.35 E-value=0.092 Score=58.27 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHH------------------------
Q 046970 190 PDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERV------------------------ 245 (420)
Q Consensus 190 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~l------------------------ 245 (420)
+....++|+|+.|.|||||++.+...+... .+.+.+++. .-...+...+.+.+
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~-~G~i~i~g~--~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPL-DGMVSIDGQ--DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED 490 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCS-EEEEEETTE--EGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE--EHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC
Q ss_pred ------------------HHHHhhccc--------cCCCCCc-hHHHHHHhcCCeEEEEEeCC---CCHHHHHHHhcCCC
Q 046970 246 ------------------LSEILEENL--------KIGTLNL-PEYIKERLQQMKVFIVLDDV---NKPEQLIFLVGGLD 295 (420)
Q Consensus 246 ------------------l~~l~~~~~--------~~~~~~~-~~~l~~~l~~~~~LlVLDdv---~~~~~l~~l~~~~~ 295 (420)
+..+..... .....+. .-.+.+.+-.++-+|+||+. -+.+.-..+...+.
T Consensus 491 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_pred CCCCCcEEEeecCChhhhhhcCCCeEEEeCC
Q 046970 296 RFGPRSRIIVTTRDKQVFDECEVDSIYEVEG 326 (420)
Q Consensus 296 ~~~~g~~IIiTtR~~~~~~~~~~~~~~~l~~ 326 (420)
....|..+|+.|++...... .+.++.++.
T Consensus 571 ~~~~~~t~i~itH~l~~i~~--~d~i~vl~~ 599 (1284)
T 3g5u_A 571 KAREGRTTIVIAHRLSTVRN--ADVIAGFDG 599 (1284)
T ss_dssp HHHTTSEEEEECSCHHHHTT--CSEEEECSS
T ss_pred HHcCCCEEEEEecCHHHHHc--CCEEEEEEC
No 424
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.33 E-value=0.06 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998853
No 425
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.32 E-value=0.09 Score=53.36 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
...+|.|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 426
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.30 E-value=0.07 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999999864
No 427
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.29 E-value=0.07 Score=44.72 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||||...+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 428
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.28 E-value=0.07 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999874
No 429
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.22 E-value=0.073 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.9
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998863
No 430
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.17 E-value=0.074 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346789999999999999999864
No 431
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.17 E-value=0.16 Score=44.73 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=27.3
Q ss_pred CceEEEEe-ccCcchHHHHHHHHHHHhhcc-ccceEEEE
Q 046970 191 DFRIVGIW-GMGGIGKTTFAGAIFNQISSE-FEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~-G~gGiGKTtLa~~~~~~~~~~-f~~~~~v~ 227 (420)
..++|+|+ +-||+||||+|..++..+... -..++.++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 35677777 559999999999999988765 33444444
No 432
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.16 E-value=0.066 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.5
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998863
No 433
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.15 E-value=0.072 Score=44.14 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.13 E-value=0.072 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 435
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.13 E-value=0.076 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=19.8
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999998864
No 436
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.09 E-value=0.092 Score=52.95 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...+|.|.|++|+||||+|+.+..++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999988753
No 437
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.09 E-value=0.11 Score=51.92 Aligned_cols=37 Identities=32% Similarity=0.269 Sum_probs=26.8
Q ss_pred CceEEEEeccCcchHHHHHHHHH-HHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIF-NQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~-~~~~~~f~~~~~v~ 227 (420)
...+++|.|++|+|||||++.++ .-+...-.+.+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46799999999999999999953 32222124567775
No 438
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.076 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999874
No 439
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.08 E-value=0.056 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.4
Q ss_pred ceEEEEeccCcchHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIF 213 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~ 213 (420)
.--|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999885
No 440
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.07 E-value=0.076 Score=44.17 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 441
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.07 E-value=0.074 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999853
No 442
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.078 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35789999999999999999875
No 443
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.078 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.193 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999999864
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.04 E-value=0.09 Score=42.89 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+.+|+|+.|.|||||..+++--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999887543
No 445
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.03 E-value=0.079 Score=43.96 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.--|+|+|.+|+|||||...+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999875
No 446
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.00 E-value=0.083 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999864
No 447
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.98 E-value=0.079 Score=44.88 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.96 E-value=0.066 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|+.|+|||||++.++...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35689999999999999999998854
No 449
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.94 E-value=0.077 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
..+++|.|++|+|||||.+.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3589999999999999999998 53
No 450
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.92 E-value=0.064 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.4
Q ss_pred EEEEeccCcchHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~ 214 (420)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999764
No 451
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.91 E-value=0.081 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998864
No 452
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.078 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998864
No 453
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.89 E-value=0.12 Score=44.32 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 46799999999999999999887654
No 454
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.89 E-value=0.064 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.3
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
.-|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999874
No 455
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.87 E-value=0.079 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999874
No 456
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.86 E-value=0.084 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 457
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.85 E-value=0.065 Score=50.82 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=28.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEe
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITN 228 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~ 228 (420)
....++|+|+.|.|||||++.+...+.. -.+.+.+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~ 210 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIED 210 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEES
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECC
Confidence 3468999999999999999999886543 245566653
No 458
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.84 E-value=0.16 Score=45.41 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=27.5
Q ss_pred CceEEEEe-ccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIW-GMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35678887 67999999999999998765533444444
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.82 E-value=0.081 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|.|||||++.++..+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998643
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.82 E-value=0.085 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999874
No 461
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.79 E-value=0.082 Score=45.15 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 446889999999999999999874
No 462
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.78 E-value=0.087 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999874
No 463
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.78 E-value=0.17 Score=44.98 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=25.3
Q ss_pred eEEEEe-ccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIW-GMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
++|+|+ +-||+||||+|..++..+..+-..++.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 466665 56899999999999998765433444444
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.081 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEeccCcchHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
--|+|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999873
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.77 E-value=0.086 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999874
No 466
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.77 E-value=0.77 Score=40.20 Aligned_cols=107 Identities=15% Similarity=0.012 Sum_probs=52.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccccCCCCCchHHHHHHhcC
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENLKIGTLNLPEYIKERLQQ 271 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 271 (420)
..+..++|.-|.||||-+...+.+...+-..++.+.-. ...+.+ ..+...+- +............ +.+.. +
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~--~D~Ryg-~~i~sr~G--~~~~a~~i~~~~d---i~~~~-~ 89 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA--KDTRYS-SSFCTHDR--NTMEALPACLLRD---VAQEA-L 89 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET--TCCCC--------------CEEEEESSGGG---GHHHH-T
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec--CCccch-HHHHhhcC--CeeEEEecCCHHH---HHHHh-c
Confidence 56889999999999998888887765543333333311 112223 33333331 1111111221111 22222 3
Q ss_pred CeEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEeecCC
Q 046970 272 MKVFIVLDDVNKPEQLIFLVGGLDRFGPRSRIIVTTRD 309 (420)
Q Consensus 272 ~~~LlVLDdv~~~~~l~~l~~~~~~~~~g~~IIiTtR~ 309 (420)
+--+|++|.+.-...+.++...+. ..|..||+|.++
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCS
T ss_pred cCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEecc
Confidence 334999998721111333333322 156789999998
No 467
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.77 E-value=0.083 Score=44.74 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999874
No 468
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.77 E-value=0.083 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999987644
No 469
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.77 E-value=0.11 Score=44.43 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999874
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.70 E-value=0.09 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999863
No 471
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.70 E-value=0.1 Score=45.78 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQIS 217 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 217 (420)
..+|.|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 472
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.66 E-value=0.35 Score=57.09 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+.+.++|++|+|||+||+.+....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC
Confidence 3678899999999999998877653
No 473
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.66 E-value=0.091 Score=44.39 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999999874
No 474
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.66 E-value=0.077 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.0
Q ss_pred CceE--EEEeccCcchHHHHHHHHHHH
Q 046970 191 DFRI--VGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 191 ~~~v--v~I~G~gGiGKTtLa~~~~~~ 215 (420)
...+ ++|+|.+|+|||||.+.++..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3446 999999999999999999863
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.63 E-value=0.1 Score=44.72 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998863
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.63 E-value=0.086 Score=51.32 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 189 LPDFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 189 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
-.....++|.|.+|+|||||++.++...... .+.+.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~ 191 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLI 191 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEe
Confidence 3456799999999999999999999876432 2344443
No 477
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.62 E-value=0.092 Score=44.22 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998863
No 478
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.62 E-value=0.088 Score=44.61 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346789999999999999999873
No 479
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.59 E-value=0.097 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999864
No 480
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.55 E-value=0.094 Score=45.76 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEeccCcchHHHHHHHHHHH
Q 046970 194 IVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 194 vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
-|+|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999998763
No 481
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.55 E-value=0.094 Score=44.66 Aligned_cols=24 Identities=17% Similarity=0.258 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999863
No 482
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.55 E-value=0.25 Score=46.06 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=27.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
..+++...|-||+||||+|..++..+...-..+..+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 356777889999999999999998876553334443
No 483
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.54 E-value=0.062 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..+++|.|++|+|||||.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999988643
No 484
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.53 E-value=0.57 Score=46.30 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHh
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+.|.|..|.|||++++.+...+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999987654
No 485
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.096 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999874
No 486
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.51 E-value=0.12 Score=45.03 Aligned_cols=27 Identities=22% Similarity=0.403 Sum_probs=24.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHHHhhc
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQISS 218 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 218 (420)
...|.+-|+.|+||||+++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 487
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.47 E-value=0.21 Score=47.41 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=27.5
Q ss_pred eEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57888999999999999999987765544455555
No 488
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.43 E-value=0.34 Score=47.14 Aligned_cols=89 Identities=15% Similarity=0.049 Sum_probs=49.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccc---cceEEEEeccccccccCHHHHHHHHHHHHhhccc----cCCCCCc--
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEF---EGECFITNVREESERVGLVHLRERVLSEILEENL----KIGTLNL-- 261 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f---~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~~-- 261 (420)
..+.++|.|.+|+|||+|+..+++....+. +.++.+..+++. ...+.++.+.+...-..... ...+...
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER--~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT--NEEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC--HHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC--cHHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 356778999999999999999998754322 123333333322 22345555555432111111 1111111
Q ss_pred -------hHHHHHHhc---CCeEEEEEeCC
Q 046970 262 -------PEYIKERLQ---QMKVFIVLDDV 281 (420)
Q Consensus 262 -------~~~l~~~l~---~~~~LlVLDdv 281 (420)
.-.+.++++ ++.+||++||+
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 123344444 58999999996
No 489
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.40 E-value=0.035 Score=56.42 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=32.5
Q ss_pred CCcccccccceeeecccccCCC---------CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 169 TGSVGVNSRIRHIKSLLHLGLP---------DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 169 ~~~vGR~~~l~~l~~~L~~~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
+.++|.+...+.+...|..+.. ....+.|+|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 5578887755555444432210 01158899999999999999998754
No 490
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.38 E-value=0.27 Score=48.25 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=46.7
Q ss_pred CceEEEEeccCcchHHHHHH-HHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc----cCCCCCc----
Q 046970 191 DFRIVGIWGMGGIGKTTFAG-AIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL----KIGTLNL---- 261 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~~---- 261 (420)
..+.++|.|.+|+|||+||. .+++... -+..+.+..+++. ...+.++.+.+...=..... ...+...
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR--~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQK--KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCC--HHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC--cHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 35678999999999999965 5555542 3434344334332 22344455554432111111 1111111
Q ss_pred -----hHHHHHHh--cCCeEEEEEeCCC
Q 046970 262 -----PEYIKERL--QQMKVFIVLDDVN 282 (420)
Q Consensus 262 -----~~~l~~~l--~~~~~LlVLDdv~ 282 (420)
.-.+.+++ .++.+|+++||+.
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11233444 3579999999983
No 491
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.35 E-value=0.096 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHHH
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.28 E-value=0.1 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEEEeccCcchHHHHHHHHHHHh
Q 046970 193 RIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 193 ~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
.+++|+|++|+|||||.+.++.-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998754
No 493
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.24 E-value=0.1 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 494
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.21 E-value=0.21 Score=50.54 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHhhccccceEEEE
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQISSEFEGECFIT 227 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~v~ 227 (420)
..+++.+.|.||+||||+|..++..+...-..+..++
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4578889999999999999999987765533444443
No 495
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.18 E-value=0.086 Score=52.75 Aligned_cols=26 Identities=50% Similarity=0.788 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHHHh
Q 046970 191 DFRIVGIWGMGGIGKTTFAGAIFNQI 216 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 216 (420)
...+++|+|++|+|||||++.++...
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998754
No 496
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.14 E-value=0.19 Score=43.67 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=24.7
Q ss_pred eEEEEecc-CcchHHHHHHHHHHHhhccccceEEE
Q 046970 193 RIVGIWGM-GGIGKTTFAGAIFNQISSEFEGECFI 226 (420)
Q Consensus 193 ~vv~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~v 226 (420)
+++.|.|. ||+||||++..++..+..+-..+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 46777775 89999999999998776553333333
No 497
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.14 E-value=0.28 Score=48.03 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=46.4
Q ss_pred CceEEEEeccCcchHHHHHH-HHHHHhhccccceEEEEeccccccccCHHHHHHHHHHHHhhccc----cCCCCCc----
Q 046970 191 DFRIVGIWGMGGIGKTTFAG-AIFNQISSEFEGECFITNVREESERVGLVHLRERVLSEILEENL----KIGTLNL---- 261 (420)
Q Consensus 191 ~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~~---- 261 (420)
..+.++|.|.+|+|||+||. .+++.. +-+..+.+..+++. ...+.++.+.+...-..... ...+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR--~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQK--QSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCC--HHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCc--chHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 45678999999999999965 555544 23434344434332 22344444444331100100 1111111
Q ss_pred -----hHHHHHHhc--CCeEEEEEeCCC
Q 046970 262 -----PEYIKERLQ--QMKVFIVLDDVN 282 (420)
Q Consensus 262 -----~~~l~~~l~--~~~~LlVLDdv~ 282 (420)
.-.+.++++ ++.+|+++||+.
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 112344443 579999999983
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.13 E-value=0.072 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=19.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFN 214 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~ 214 (420)
..-|+|+|.+|+|||||...+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999988764
No 499
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.08 E-value=0.11 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998853
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.08 E-value=0.11 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHHH
Q 046970 192 FRIVGIWGMGGIGKTTFAGAIFNQ 215 (420)
Q Consensus 192 ~~vv~I~G~gGiGKTtLa~~~~~~ 215 (420)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999863
Done!