Query 046971
Match_columns 244
No_of_seqs 117 out of 1230
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 6.5E-27 1.4E-31 219.1 26.3 198 38-235 12-262 (455)
2 PRK00187 multidrug efflux prot 99.9 1.1E-24 2.5E-29 204.2 27.6 196 38-233 5-255 (464)
3 PRK10367 DNA-damage-inducible 99.9 2.4E-24 5.1E-29 201.0 26.9 197 38-234 4-252 (441)
4 KOG1347 Uncharacterized membra 99.9 1.1E-24 2.4E-29 204.5 21.1 207 30-236 15-269 (473)
5 PRK10189 MATE family multidrug 99.9 2.3E-23 5E-28 196.2 27.4 192 41-232 27-277 (478)
6 PRK09575 vmrA multidrug efflux 99.9 2.9E-22 6.3E-27 187.3 25.5 195 39-233 8-253 (453)
7 PRK01766 multidrug efflux prot 99.9 1.2E-21 2.7E-26 182.7 27.0 199 36-234 5-259 (456)
8 PRK00187 multidrug efflux prot 99.8 1.6E-17 3.4E-22 156.0 23.4 172 36-207 229-442 (464)
9 PRK01766 multidrug efflux prot 99.8 2.2E-17 4.8E-22 154.0 22.3 172 36-207 232-440 (456)
10 COG0534 NorM Na+-driven multid 99.8 1.5E-16 3.3E-21 149.2 23.4 175 33-207 231-441 (455)
11 PRK09575 vmrA multidrug efflux 99.8 2.6E-16 5.6E-21 147.2 23.1 172 36-207 227-434 (453)
12 PRK10189 MATE family multidrug 99.7 6E-16 1.3E-20 145.9 24.0 172 36-207 252-460 (478)
13 TIGR00797 matE putative efflux 99.7 1.6E-14 3.4E-19 129.1 24.7 184 51-234 1-236 (342)
14 PRK10367 DNA-damage-inducible 99.7 6.8E-14 1.5E-18 130.7 24.8 168 39-207 228-429 (441)
15 TIGR01695 mviN integral membra 99.6 1E-13 2.2E-18 130.3 25.0 195 38-232 218-457 (502)
16 TIGR01695 mviN integral membra 99.5 7.2E-12 1.6E-16 117.7 25.2 187 45-231 2-240 (502)
17 PF01554 MatE: MatE; InterPro 99.5 4.1E-14 9E-19 113.3 6.0 129 51-179 1-159 (162)
18 PF03023 MVIN: MviN-like prote 99.5 6.3E-11 1.4E-15 111.1 26.8 196 38-233 193-433 (451)
19 TIGR02900 spore_V_B stage V sp 99.4 3.8E-10 8.3E-15 105.6 25.7 180 36-219 218-447 (488)
20 TIGR02900 spore_V_B stage V sp 99.3 1.3E-09 2.7E-14 102.1 23.5 182 46-231 2-242 (488)
21 COG0728 MviN Uncharacterized m 99.3 5E-09 1.1E-13 99.2 26.7 201 40-241 229-476 (518)
22 PRK15099 O-antigen translocase 99.3 2.8E-09 6E-14 98.4 23.6 169 36-206 208-409 (416)
23 PRK15099 O-antigen translocase 99.2 6.7E-09 1.5E-13 95.9 23.3 175 53-231 11-232 (416)
24 PRK10459 colanic acid exporter 99.2 1.4E-08 3E-13 95.6 24.7 166 39-206 203-402 (492)
25 COG2244 RfbX Membrane protein 98.8 2.6E-06 5.7E-11 79.8 23.4 153 38-194 208-396 (480)
26 PF14667 Polysacc_synt_C: Poly 98.5 1.6E-06 3.4E-11 68.3 11.6 72 136-207 2-78 (146)
27 TIGR00797 matE putative efflux 98.5 2.8E-06 6.1E-11 75.7 13.3 105 35-139 208-341 (342)
28 PF03023 MVIN: MviN-like prote 98.2 0.00094 2E-08 62.8 24.6 116 112-227 75-211 (451)
29 PF01943 Polysacc_synt: Polysa 97.9 0.012 2.5E-07 50.0 24.3 179 49-231 5-222 (273)
30 KOG1347 Uncharacterized membra 97.9 5.5E-05 1.2E-09 71.6 8.6 164 39-202 243-445 (473)
31 PRK10459 colanic acid exporter 97.9 0.0054 1.2E-07 57.7 22.1 173 52-229 14-222 (492)
32 PF13440 Polysacc_synt_3: Poly 97.7 0.027 5.8E-07 47.4 22.5 166 62-232 3-201 (251)
33 PF07260 ANKH: Progressive ank 97.3 0.14 2.9E-06 46.1 21.6 189 41-232 9-253 (345)
34 COG0728 MviN Uncharacterized m 96.8 0.52 1.1E-05 45.3 25.0 185 39-226 7-244 (518)
35 COG2244 RfbX Membrane protein 96.3 0.75 1.6E-05 43.0 19.4 188 41-231 4-230 (480)
36 PF01943 Polysacc_synt: Polysa 93.7 0.43 9.3E-06 40.3 8.5 52 39-90 201-253 (273)
37 PF04506 Rft-1: Rft protein; 88.8 24 0.00053 34.3 17.9 165 43-207 253-468 (549)
38 PF13440 Polysacc_synt_3: Poly 87.7 4 8.8E-05 34.0 8.6 46 45-90 185-231 (251)
39 KOG2864 Nuclear division RFT1 65.9 1.3E+02 0.0028 28.9 17.5 95 113-207 345-447 (530)
40 PF05483 SCP-1: Synaptonemal c 33.5 13 0.00027 36.9 -0.3 13 1-13 709-721 (786)
41 PF01340 MetJ: Met Apo-repress 23.4 63 0.0014 23.6 1.9 45 3-47 49-93 (104)
42 PF04172 LrgB: LrgB-like famil 23.0 4.7E+02 0.01 22.2 12.6 94 37-130 65-166 (215)
43 PF14715 FixP_N: N-terminal do 22.6 37 0.00081 22.0 0.6 19 2-26 4-22 (51)
44 TIGR00659 conserved hypothetic 22.0 5.1E+02 0.011 22.2 12.8 94 37-130 75-176 (226)
45 PF04854 DUF624: Protein of un 20.4 2.9E+02 0.0062 18.7 5.4 24 31-54 45-68 (77)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.96 E-value=6.5e-27 Score=219.08 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH---------------
Q 046971 38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL--------------- 99 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~--------------- 99 (244)
.+++.|+++|+++|++++++.+++++++|++++||+|++++||+++++++.++. ..++..|.
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 677999999999999999999999999999999999999999999999998852 22233332
Q ss_pred -HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 046971 100 -FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWV 168 (244)
Q Consensus 100 -~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i 168 (244)
+...++++.+ ...++.+++++++++++|+.+.+.+|+++..++.|+..++.++++++|+.||+|+||++
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 1222222221 11288999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--------hc-CCchHHHHHHHHHHHHHHHHHHHHHH--H-------------hhccHHHHHHHHHHHH
Q 046971 169 SLASLLVHIFV--------MQ-LGLIRTAVTSNFSWWVLVFGMFGYVA--S-------------AFSGPCEFVKLSVASG 224 (244)
Q Consensus 169 ~li~~vv~i~l--------~~-lGv~Gaa~A~~is~~~~~ll~~~~~~--~-------------~~~~~~~~lkig~P~~ 224 (244)
+++++++|+++ .+ ||+.|+|+||.+++++.+++.++++. . .++.+|+++|+|.|++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~ 251 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF 251 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence 99999999999 34 99999999999999999998877764 1 1235789999999999
Q ss_pred HHHHHHHHHHH
Q 046971 225 VMLCFSVQKIY 235 (244)
Q Consensus 225 ~~~~~e~~~~~ 235 (244)
++...|...+.
T Consensus 252 ~~~~~~~~~~~ 262 (455)
T COG0534 252 LESLSESLGFL 262 (455)
T ss_pred HHHHHHHHHHH
Confidence 99988876653
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=1.1e-24 Score=204.21 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=161.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH---------------
Q 046971 38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL--------------- 99 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~--------------- 99 (244)
.+++.|+++++++|..++++.+.+.+++|++++||+|++++||++++.++.+++ ..++..|.
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 467899999999999999999999999999999999999999999999998752 22333333
Q ss_pred -HHHHHHHHHH---------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 046971 100 -FLSVNRSFVI---------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS 169 (244)
Q Consensus 100 -~~~~~~~~~~---------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~ 169 (244)
+...++++.+ ....+.++++++++.|+|+.+.+.+|+++..+++|+..+...+++++|++||++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 1222222111 111567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H------h-------hccHHHHHHHHHH
Q 046971 170 LASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S------A-------FSGPCEFVKLSVA 222 (244)
Q Consensus 170 li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~------~-------~~~~~~~lkig~P 222 (244)
+++.++|+++ |++|+.|+|+|+.+++....+.+.++++ . . ++.+|+++|+|+|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 9999999888 4699999999999999888776554443 0 0 1235899999999
Q ss_pred HHHHHHHHHHH
Q 046971 223 SGVMLCFSVQK 233 (244)
Q Consensus 223 ~~~~~~~e~~~ 233 (244)
.+++.+.|...
T Consensus 245 ~~~~~~~~~~~ 255 (464)
T PRK00187 245 IGGTYAVEVGL 255 (464)
T ss_pred HHHHHHHHHHH
Confidence 99988887644
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.94 E-value=2.4e-24 Score=201.00 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHH---HHHHHHHHH--------------
Q 046971 38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL-GDLELAAISIANNVVVA---LNYGLLVIL-------------- 99 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l-G~~alAa~~l~~~i~~~---~~~~i~~G~-------------- 99 (244)
.+++.|+++|+++|+.++++.+++++++|+.++||+ |++++||++++.++.++ ...++..|.
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 467899999999999999999999999999999999 67799999999988764 222333332
Q ss_pred --HHHHHHHHHHHH----------HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 046971 100 --FLSVNRSFVISL----------INWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW 167 (244)
Q Consensus 100 --~~~~~~~~~~~~----------~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~ 167 (244)
+...+++..+.. ..+.+++++++++|+|+.+.+.+|+++..++.|+..+..++++++||.||+|.||+
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 122222221111 15678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHHH----h------h-----ccHHHHHHHHHHHHH
Q 046971 168 VSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVAS----A------F-----SGPCEFVKLSVASGV 225 (244)
Q Consensus 168 i~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~~----~------~-----~~~~~~lkig~P~~~ 225 (244)
++++++++|+++ +++|+.|+|+||.+++++.+++..+++.+ . + ..+|+++|+|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999998 58999999999999999988776555431 0 1 125788999999999
Q ss_pred HHHHHHHHH
Q 046971 226 MLCFSVQKI 234 (244)
Q Consensus 226 ~~~~e~~~~ 234 (244)
+.+.+..++
T Consensus 244 ~~~~~~~~~ 252 (441)
T PRK10367 244 RSLLLQLCF 252 (441)
T ss_pred HHHHHHHHH
Confidence 888776553
No 4
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=204.46 Aligned_cols=207 Identities=32% Similarity=0.449 Sum_probs=186.3
Q ss_pred CchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHH----------
Q 046971 30 SDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVIL---------- 99 (244)
Q Consensus 30 ~~~~~~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~~~~i~~G~---------- 99 (244)
+..+.++..++|.|++++++.|+++..+.+++.+++++.|+||+|+.++|+.++++...|.+++++..|+
T Consensus 15 ~~~~~~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQ 94 (473)
T KOG1347|consen 15 PVNPFFSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQ 94 (473)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHh
Confidence 3334555669999999999999999999999999999999999999999999999999998888887766
Q ss_pred ----------HHHHHHHHHHHHH---------HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 046971 100 ----------FLSVNRSFVISLI---------NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQL 160 (244)
Q Consensus 100 ----------~~~~~~~~~~~~~---------~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G 160 (244)
+.+++|+..+... .+.++++..+++|+++...+..|.++.+|.++.......+++++|+|+
T Consensus 95 a~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~ 174 (473)
T KOG1347|consen 95 AFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQS 174 (473)
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhcc
Confidence 5677776554331 778999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH------------HhhccHHHHHHHHH
Q 046971 161 KTKVIAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA------------SAFSGPCEFVKLSV 221 (244)
Q Consensus 161 ~~~~~m~i~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~------------~~~~~~~~~lkig~ 221 (244)
++.+..+++..+.++|+++ +++|..|++++..++++........|+. ..++++++++|.++
T Consensus 175 ~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai 254 (473)
T KOG1347|consen 175 ITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAI 254 (473)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhh
Confidence 9999999999999999998 7899999999999999999998887765 12788999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 046971 222 ASGVMLCFSVQKIYQ 236 (244)
Q Consensus 222 P~~~~~~~e~~~~~~ 236 (244)
|+++|.|.|||.+..
T Consensus 255 ~s~~miclE~w~~ei 269 (473)
T KOG1347|consen 255 PSAVMICLEWWAYEI 269 (473)
T ss_pred cchheeHHHHHHHHH
Confidence 999999999998754
No 5
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=2.3e-23 Score=196.23 Aligned_cols=192 Identities=11% Similarity=0.115 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH----------------HH
Q 046971 41 ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL----------------FL 101 (244)
Q Consensus 41 ~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~----------------~~ 101 (244)
..|+++|+++|..++++.+++++++|+.++|++|++++||++++.++.++ ...++..|. +.
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~ 106 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARA 106 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 48999999999999999999999999999999999999999999998775 222333332 12
Q ss_pred HHHHHHHH----------HHHHhHHHHHHHcC--CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 046971 102 SVNRSFVI----------SLINWKMLVLKLLG--QPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS 169 (244)
Q Consensus 102 ~~~~~~~~----------~~~~~~~~il~~fg--~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~ 169 (244)
..+++..+ ...+++++++.+++ .|+|+.+.+.+|+++..++.|+..+..++++++||.||++.||+++
T Consensus 107 ~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~ 186 (478)
T PRK10189 107 AARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLIN 186 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHH
Confidence 22222111 11267889999994 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H--------------hhccHHHHHHHHH
Q 046971 170 LASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S--------------AFSGPCEFVKLSV 221 (244)
Q Consensus 170 li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~--------------~~~~~~~~lkig~ 221 (244)
+++.++|+++ |++|+.|+|+|+.+++++.+++..+++. . .++.+|+++|+|+
T Consensus 187 ~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~ 266 (478)
T PRK10189 187 GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGI 266 (478)
T ss_pred HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhc
Confidence 9998988887 4799999999999999998876654432 0 1134689999999
Q ss_pred HHHHHHHHHHH
Q 046971 222 ASGVMLCFSVQ 232 (244)
Q Consensus 222 P~~~~~~~e~~ 232 (244)
|++++...+-.
T Consensus 267 P~~~~~~~~~~ 277 (478)
T PRK10189 267 PASIESVLFNG 277 (478)
T ss_pred cHHHHHHHHHH
Confidence 99997666554
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=2.9e-22 Score=187.28 Aligned_cols=195 Identities=17% Similarity=0.163 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHHH---HHHHHHHH---------------
Q 046971 39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL-GDLELAAISIANNVVVAL---NYGLLVIL--------------- 99 (244)
Q Consensus 39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l-G~~alAa~~l~~~i~~~~---~~~i~~G~--------------- 99 (244)
++..|+++++++|..++++.+.+++++|+.++||+ |++++||++++.++.++. .++++.|.
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 45779999999999999999999999999999996 999999999999987741 12222222
Q ss_pred -HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 046971 100 -FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWV 168 (244)
Q Consensus 100 -~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i 168 (244)
+...++...+ ....++++++.+++.|+|+.+.+.+|+++..++.|+..+...+..++|+.||++.|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 1222222111 11177899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH----------H----hhccHHHHHHHHHHHHHHH
Q 046971 169 SLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA----------S----AFSGPCEFVKLSVASGVML 227 (244)
Q Consensus 169 ~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~----------~----~~~~~~~~lkig~P~~~~~ 227 (244)
++++.++|+++ +++|+.|+++|+.+++++..++..++++ + .++.+|+++|+|+|++++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 99999999888 5799999999999999999887766553 0 1133689999999999988
Q ss_pred HHHHHH
Q 046971 228 CFSVQK 233 (244)
Q Consensus 228 ~~e~~~ 233 (244)
..+...
T Consensus 248 ~~~~~~ 253 (453)
T PRK09575 248 LYGSFV 253 (453)
T ss_pred HHHHHH
Confidence 776554
No 7
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.90 E-value=1.2e-21 Score=182.66 Aligned_cols=199 Identities=22% Similarity=0.345 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH-------------
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL------------- 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~------------- 99 (244)
++.++..|+++|+++|..++++.+.+.+.+|+.++|++|++++||++++.++.+. +..++..|.
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4568889999999999999999999999999999999999999999999887653 122333332
Q ss_pred ---HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971 100 ---FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA 166 (244)
Q Consensus 100 ---~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m 166 (244)
.....++..+ ....++++++++++.|+|+.+.+.+|+++..++.|+..+..++++++|+.||+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 1111111111 111667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H-------------hhccHHHHHHH
Q 046971 167 WVSLASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S-------------AFSGPCEFVKL 219 (244)
Q Consensus 167 ~i~li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~-------------~~~~~~~~lki 219 (244)
+.++++.++|+++ |++|+.|+++|+.+++++..++..++++ + .++.+|+++++
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 9999999999887 3689999999999999999887766553 1 11346899999
Q ss_pred HHHHHHHHHHHHHHH
Q 046971 220 SVASGVMLCFSVQKI 234 (244)
Q Consensus 220 g~P~~~~~~~e~~~~ 234 (244)
|+|.+++.+.|...+
T Consensus 245 ~~P~~~~~~~~~~~~ 259 (456)
T PRK01766 245 GLPIGLAIFFEVSLF 259 (456)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999988886543
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.80 E-value=1.6e-17 Score=156.00 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=142.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH-------------
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL------------- 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~------------- 99 (244)
+..++..|+++|+++|..++++.+.....+|+.+++++|++++||.+++.++.++ +..++..|.
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3467789999999999999999999999999999999999999999999998775 233333333
Q ss_pred ---HHHHHHHHH----------HHHHHhHHHHHHHcCC--Ch---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 046971 100 ---FLSVNRSFV----------ISLINWKMLVLKLLGQ--PD---DVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLK 161 (244)
Q Consensus 100 ---~~~~~~~~~----------~~~~~~~~~il~~fg~--~~---~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~ 161 (244)
......+.. +....++++++++|.. ++ |+.+.+..|+++..++.++..++.++.+++||.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 111111111 1122788999999953 44 78999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 162 TKVIAWVSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 162 ~~~~m~i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
++.++++++++. ++|+|+ +++|+.|+|+++.+++++..+.....++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 899988 5799999999999999998877765554
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.79 E-value=2.2e-17 Score=154.00 Aligned_cols=172 Identities=18% Similarity=0.169 Sum_probs=144.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH-------------
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL------------- 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~------------- 99 (244)
+..++..|+++++++|..++++.+...+.++..+++++|++++||.+++.++.++. ..++..|.
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34678899999999999999999999999999999999999999999999988752 22332222
Q ss_pred ---HHHHHHHHH----------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971 100 ---FLSVNRSFV----------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA 166 (244)
Q Consensus 100 ---~~~~~~~~~----------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m 166 (244)
......+.. +....+++++.++|++|+|+.+.+..|+++..++.++..++.++++++||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 111111111 1122789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 167 WVSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 167 ~i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
.+++++. ++++|+ +++|+.|+|+++.+++++..++..++++
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~ 440 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLR 440 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 688886 5799999999999999999998776664
No 10
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.76 E-value=1.5e-16 Score=149.20 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=148.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH----------
Q 046971 33 SLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL---------- 99 (244)
Q Consensus 33 ~~~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~---------- 99 (244)
+..+.+++..|+++|+++|..++++.......+.+.+++++|++++||.+++.++.++ +.+|+..+.
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4467888999999999999999999999999999999999999999999999999886 233443333
Q ss_pred ------HHHHHHH----------HHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971 100 ------FLSVNRS----------FVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK 163 (244)
Q Consensus 100 ------~~~~~~~----------~~~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~ 163 (244)
....... ..+....+++++.++|.+|+|+.+.+.+|+++..+..++...+.+..+++||.||+|
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 0111111 111222899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHH-----hc-CCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 164 VIAWVSLASL-LVHIFV-----MQ-LGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 164 ~~m~i~li~~-vv~i~l-----~~-lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
.|+++++++. .+.+|+ .. +|..|.|++...++.+..++..++++
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~ 441 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLR 441 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 567887 33 99999999999999999998887775
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.75 E-value=2.6e-16 Score=147.23 Aligned_cols=172 Identities=12% Similarity=0.104 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hHHHHHHHHHHHHHH---HHHHHHHHH------------
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGD-LELAAISIANNVVVA---LNYGLLVIL------------ 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~-~alAa~~l~~~i~~~---~~~~i~~G~------------ 99 (244)
+..++..|+++|+++|..+++........+...+++++|+ +++|+++++.++.++ +.+++..|.
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence 4567889999999999999999999999999999999996 589999999998775 223333333
Q ss_pred ----HHHHHHHHH----------HHHHHhHHHHHHHcCC-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 046971 100 ----FLSVNRSFV----------ISLINWKMLVLKLLGQ-PDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKV 164 (244)
Q Consensus 100 ----~~~~~~~~~----------~~~~~~~~~il~~fg~-~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~ 164 (244)
......++. +....++++++++|+. |||+.+.+.+|+++..+++|+..+..++++++||.||++.
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK 386 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 111111111 1122789999999995 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 165 IAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 165 ~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
+|.+++.+.++++|+ +.+|+.|+|+++.+++++..++..++++
T Consensus 387 ~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 387 ALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 999999888889987 3489999999999999998887766554
No 12
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.74 E-value=6e-16 Score=145.93 Aligned_cols=172 Identities=14% Similarity=0.098 Sum_probs=143.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH-------------
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL------------- 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~------------- 99 (244)
+..++..|+++|+++|..++++......++.+.+++++|++++||.+++.++.++. .+++..+.
T Consensus 252 ~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 252 PLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred cCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34678999999999999999999999999999999999999999999999988752 23333322
Q ss_pred ---HHHHHHH----H------HHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971 100 ---FLSVNRS----F------VISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA 166 (244)
Q Consensus 100 ---~~~~~~~----~------~~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m 166 (244)
......+ . .+..+.+++++.++|.+|+|+.+.+..++++.++..|+..+..+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 0001111 1 11122789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 167 WVSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 167 ~i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
++++++. ++.+|+ +++|+.|.|++..+++.+..++..++++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~ 460 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMV 460 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 677777 4789999999999999999887766664
No 13
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.69 E-value=1.6e-14 Score=129.11 Aligned_cols=184 Identities=24% Similarity=0.376 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH----------------HHHHHHHHHH--
Q 046971 51 PTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL----------------FLSVNRSFVI-- 109 (244)
Q Consensus 51 P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~----------------~~~~~~~~~~-- 109 (244)
|..++++...+.+.+|+.+++++|++++++++++.++.++. ..++..|. .........+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999998877641 22333333 1111111111
Q ss_pred --------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH--
Q 046971 110 --------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-- 179 (244)
Q Consensus 110 --------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l-- 179 (244)
....+++++..+++.|++..+.+.+|+++..++.++..+...+++++|+.||++.++..++++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 1127789999999988999999999999999999999999999999999999999999999998888776
Q ss_pred ---h-c---CCchHHHHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHHHHHHHHHHHHHHH
Q 046971 180 ---M-Q---LGLIRTAVTSNFSWWVLVFGMFGYVAS--------------AFSGPCEFVKLSVASGVMLCFSVQKI 234 (244)
Q Consensus 180 ---~-~---lGv~Gaa~A~~is~~~~~ll~~~~~~~--------------~~~~~~~~lkig~P~~~~~~~e~~~~ 234 (244)
. . +|+.|+++++.+++.+.+++..++.++ .++.+|++++.|.|.......++...
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~ 236 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSF 236 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3 3 559999999999999988877655431 12457999999999999888777543
No 14
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.65 E-value=6.8e-14 Score=130.73 Aligned_cols=168 Identities=9% Similarity=0.004 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH----------------
Q 046971 39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL---------------- 99 (244)
Q Consensus 39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~---------------- 99 (244)
++..|+++|++.|..++++.......+.+.+++++|++++||++++.++.++ +.+|+..|.
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4578999999999999999999999999999999999999999999999875 223333332
Q ss_pred HHHHHHH----HH------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHhcCChhHH
Q 046971 100 FLSVNRS----FV------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQ----FPLQTFLQSQLKTKVI 165 (244)
Q Consensus 100 ~~~~~~~----~~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~----~~~~~~lra~G~~~~~ 165 (244)
.....+. .. +....+++++..+|++|+|+.+.+..|+++..+..+..... ..+++.+||. |++.|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~ 386 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHH
Confidence 0111111 11 11227899999999999999999999999987653322233 3455556665 79999
Q ss_pred HHHHHHHHHH-HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 166 AWVSLASLLV-HIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 166 m~i~li~~vv-~i~l~~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
|++++++..+ -++++++|+.|+|++..+++.+..++...+++
T Consensus 387 ~~~~~~~~~~~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~ 429 (441)
T PRK10367 387 MAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWR 429 (441)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998754 23337899999999999999999988876665
No 15
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.64 E-value=1e-13 Score=130.28 Aligned_cols=195 Identities=17% Similarity=0.145 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH----HHHHHHHH--------------
Q 046971 38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL----NYGLLVIL-------------- 99 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~----~~~i~~G~-------------- 99 (244)
.++..|+++|+++|..++++.......+|+.+.+++|+.++++++.+.++.++. ..++..++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 456789999999999999999999999999998888999999999999887652 12222222
Q ss_pred --HHHHHHH----HHH------HHHHhHHHHHHHcCC----ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971 100 --FLSVNRS----FVI------SLINWKMLVLKLLGQ----PDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK 163 (244)
Q Consensus 100 --~~~~~~~----~~~------~~~~~~~~il~~fg~----~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~ 163 (244)
.....+. ..+ ....+++++.+++.+ |+|..+.+..++++.+++.++..+...+.+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 1111111 111 112788999888754 567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHH
Q 046971 164 VIAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVASA------FSGPCEFVKLSVASGVMLCFSVQ 232 (244)
Q Consensus 164 ~~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~------~~~~~~~lkig~P~~~~~~~e~~ 232 (244)
.+++.++++.++|+++ +.+|+.|+|+|+.+++.+..++..+++++. .+..+.+.|.-+++.+|...-++
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~m~~~~~~ 457 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYL 457 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999889887 678999999999999999988877666532 22345677777777777666543
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.52 E-value=7.2e-12 Score=117.74 Aligned_cols=187 Identities=12% Similarity=0.071 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHH-HHHHHHHHHHHHH-HH----HHHHHH---------HH-----HH
Q 046971 45 LWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLEL-AAISIANNVVVAL-NY----GLLVIL---------FL-----SV 103 (244)
Q Consensus 45 ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~al-Aa~~l~~~i~~~~-~~----~i~~G~---------~~-----~~ 103 (244)
+.|-+.=..++++.+...+++|..+++| +|++++ ++++++.++.+.. .. ++..+. .. ..
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~ 81 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKEARRAF 81 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3455666788899999999999999999 799999 7999999887542 11 122222 11 11
Q ss_pred HHHHHH-----------HHHHhHHHHHHHc--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 046971 104 NRSFVI-----------SLINWKMLVLKLL--GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSL 170 (244)
Q Consensus 104 ~~~~~~-----------~~~~~~~~il~~f--g~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~l 170 (244)
...... ...++++++..++ |.|+|..+.+.+|+++..++.|+..+...+++++|+.||.+.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 161 (502)
T TIGR01695 82 ANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPI 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHH
Confidence 111110 0115678888887 568888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-----hcCCchHHH--HHHHHHHHHHHHHHHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHH
Q 046971 171 ASLLVHIFV-----MQLGLIRTA--VTSNFSWWVLVFGMFGYVAS-----------AFSGPCEFVKLSVASGVMLCFSV 231 (244)
Q Consensus 171 i~~vv~i~l-----~~lGv~Gaa--~A~~is~~~~~ll~~~~~~~-----------~~~~~~~~lkig~P~~~~~~~e~ 231 (244)
+.++++++. +++|..|++ +++.+++.+..++...++++ ..+.+|+++|.|.|..+....+.
T Consensus 162 ~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~ 240 (502)
T TIGR01695 162 LFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQ 240 (502)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 998877654 788999988 99999999988877655431 12457999999999998766554
No 17
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.49 E-value=4.1e-14 Score=113.33 Aligned_cols=129 Identities=26% Similarity=0.376 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH----------------HHHHHHHHH---
Q 046971 51 PTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL----------------FLSVNRSFV--- 108 (244)
Q Consensus 51 P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~----------------~~~~~~~~~--- 108 (244)
|..++++.+.+.+.+|+.+++++|++++|+++++.++.++. ..++..|. ....++...
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 89999999999999999999999999999999999998852 23333343 111111111
Q ss_pred -------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHH
Q 046971 109 -------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASL-LVHIFV 179 (244)
Q Consensus 109 -------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~-vv~i~l 179 (244)
+....++++++.+|+.|+|+.+.+.+|+++..++.|+..+..++++++||.||++.+++.++++. ++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 11227889999999999999999999999999999999999999999999999999999999999 899986
No 18
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.47 E-value=6.3e-11 Score=111.14 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH----HHHHHHHH--------------
Q 046971 38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL----NYGLLVIL-------------- 99 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~----~~~i~~G~-------------- 99 (244)
..+..|+++|...|..++........++|+.+.+.+++-++++..-+.++.++. +.++....
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 345689999999999999999999999999999999999999999999998863 11222211
Q ss_pred --HHHHHHHHH----H------HHHHhHHHHHHHc---C-CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971 100 --FLSVNRSFV----I------SLINWKMLVLKLL---G-QPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK 163 (244)
Q Consensus 100 --~~~~~~~~~----~------~~~~~~~~il~~f---g-~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~ 163 (244)
.....+.+. + .+..+++++.+++ | -++|-.+....++++.++++|+..+...+.+.+.++||+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 111222211 1 1127788887764 2 3777788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHh-----hccHHH-HHHHHHHHHHHHHHHHH
Q 046971 164 VIAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVASA-----FSGPCE-FVKLSVASGVMLCFSVQ 232 (244)
Q Consensus 164 ~~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~-----~~~~~~-~lkig~P~~~~~~~e~~ 232 (244)
.|+.+++++.++|+++ +.+|..|.++|+.++.++.+++++.+.++. .+.++. ..+.-.+++++...=+|
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLGLFSFRKILLFLLKILLASALMAVILLL 432 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 889999999999999999999888777533 233333 33345556655544444
Q ss_pred H
Q 046971 233 K 233 (244)
Q Consensus 233 ~ 233 (244)
.
T Consensus 433 ~ 433 (451)
T PF03023_consen 433 L 433 (451)
T ss_pred H
Confidence 3
No 19
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.38 E-value=3.8e-10 Score=105.59 Aligned_cols=180 Identities=17% Similarity=0.129 Sum_probs=128.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C---hhHHHHHHH----HHHHHHHH---HHHHHHHH--
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL----G---DLELAAISI----ANNVVVAL---NYGLLVIL-- 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l----G---~~alAa~~l----~~~i~~~~---~~~i~~G~-- 99 (244)
+..++..|++++.++|..++++.....+.+|+.++|++ | ..+.+.+|. +.++.++. ..++..+.
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p 297 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVP 297 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999874 2 222333332 22333321 11222222
Q ss_pred --------------HHHHHHHH----HH------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046971 100 --------------FLSVNRSF----VI------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTF 155 (244)
Q Consensus 100 --------------~~~~~~~~----~~------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~ 155 (244)
.....+.. .+ .+..++++++.++..+++ +..|+++.+++.++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 11 122778899888765543 678999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHH
Q 046971 156 LQSQLKTKVIAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVASAF---SGPCEFVKL 219 (244)
Q Consensus 156 lra~G~~~~~m~i~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~~---~~~~~~lki 219 (244)
+++.||+|.+++.++++.++|+++ |.+|+.|+|+|+.+++.+..++..++.++.. .+++++.+.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIRITIDLSDFLIF 447 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 999999999999999999888886 5689999999999999999888877765222 235555543
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.29 E-value=1.3e-09 Score=102.12 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH----H------------HHHH
Q 046971 46 WHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL----F------------LSVN 104 (244)
Q Consensus 46 lki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~----~------------~~~~ 104 (244)
+|-+.|..++++.+...+++|+.+++| +|+++.++++.+.++.++. ..|+..+. + ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 466899999999999999999999999 5999999999999877642 12333333 0 0001
Q ss_pred HHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046971 105 RSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLL 174 (244)
Q Consensus 105 ~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~v 174 (244)
.+..+ ....+.+.+...++.+++. ..|+++..+..|+..+...+++++|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 11111 1114566666666666653 357788889999999999999999999999999999999887
Q ss_pred HHHHH------------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H---h----------hccHHHHHHHHHHHHHH
Q 046971 175 VHIFV------------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S---A----------FSGPCEFVKLSVASGVM 226 (244)
Q Consensus 175 v~i~l------------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~---~----------~~~~~~~lkig~P~~~~ 226 (244)
+|+++ .+.|+.|+++++.+++++..++.+++++ + + ++.+|++++.|+|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 77554 2457889999999999998887655443 1 1 12468999999999987
Q ss_pred HHHHH
Q 046971 227 LCFSV 231 (244)
Q Consensus 227 ~~~e~ 231 (244)
...+.
T Consensus 238 ~~~~~ 242 (488)
T TIGR02900 238 RFIGS 242 (488)
T ss_pred HHHHH
Confidence 66654
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.28 E-value=5e-09 Score=99.25 Aligned_cols=201 Identities=17% Similarity=0.223 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH----HHHHHHHH----------------
Q 046971 40 TESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL----NYGLLVIL---------------- 99 (244)
Q Consensus 40 ~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~----~~~i~~G~---------------- 99 (244)
+..|++++...|+.++.....+..++|+.+.+.+.+-+++...-+.++.++. +.++..-+
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 7889999999999999999999999999999999999999999999999863 22222222
Q ss_pred HHHHHHHH----HH------HHHHhHHHHHHHc---C-CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 046971 100 FLSVNRSF----VI------SLINWKMLVLKLL---G-QPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVI 165 (244)
Q Consensus 100 ~~~~~~~~----~~------~~~~~~~~il~~f---g-~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~ 165 (244)
...+++++ ++ .+..+++|+.+.+ | -+++-...+.+-++....++|+..+...+...+.+.+|+|+|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 11112211 11 1227888887764 3 356666678888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHH
Q 046971 166 AWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVASA--------FSGPCEFVKLSVASGVMLCFSVQ 232 (244)
Q Consensus 166 m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~--------~~~~~~~lkig~P~~~~~~~e~~ 232 (244)
|.+++++.++|+.+ +.+|..|.+.|+.++-++++.++++..++. +.... ..|+-+-++++...-|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~-~~k~~l~~~i~~~~~~~ 467 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL-ILKLLLASAIMAAALLA 467 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999888 778999999999999999888887776522 12223 67888888887777776
Q ss_pred HHHHhhhhh
Q 046971 233 KIYQTSEKW 241 (244)
Q Consensus 233 ~~~~~~~~~ 241 (244)
....+...|
T Consensus 468 ~~~~~~~~~ 476 (518)
T COG0728 468 LLHLAQREW 476 (518)
T ss_pred HHHHHHHHH
Confidence 665555344
No 22
>PRK15099 O-antigen translocase; Provisional
Probab=99.26 E-value=2.8e-09 Score=98.44 Aligned_cols=169 Identities=9% Similarity=0.008 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHH----HHHHHHHHH-----------
Q 046971 36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAG-HLGDLELAAISIANNVVVA----LNYGLLVIL----------- 99 (244)
Q Consensus 36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg-~lG~~alAa~~l~~~i~~~----~~~~i~~G~----------- 99 (244)
+.+++..|+++++++|..++++.....+..|+.+++ ++|+++++.++.+.++.+. ...++..+.
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~ 287 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKR 287 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 346788899999999999999999999999999997 7999999999999998552 222233333
Q ss_pred --HHHHHHHHH----------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 046971 100 --FLSVNRSFV----------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW 167 (244)
Q Consensus 100 --~~~~~~~~~----------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~ 167 (244)
.....+... +...++++++.+++..++ .+.+.+++++..++.++......+...+-+.++++..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111110 111178899999887654 122567888877777776666666666667888888888
Q ss_pred HHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHH
Q 046971 168 VSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYV 206 (244)
Q Consensus 168 i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~ 206 (244)
..+...++++++ |.+|..|+++|+.+++.+...+..+..
T Consensus 366 ~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~ 409 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVF 409 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888866 779999999999999999988776544
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.20 E-value=6.7e-09 Score=95.86 Aligned_cols=175 Identities=9% Similarity=-0.049 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH----
Q 046971 53 IFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVALNYGLLVIL------------------FLSVNRSFVI---- 109 (244)
Q Consensus 53 ~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~~~~i~~G~------------------~~~~~~~~~~---- 109 (244)
..+.......+++....++| +|+++.+.++...++.++.......|. ......+..+
T Consensus 11 ~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~~~~~~~~~~~~~~~~~l~~~~ 90 (416)
T PRK15099 11 AASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMVLGF 90 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555566666767777 699999998888887764322222232 0111111111
Q ss_pred ------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH----
Q 046971 110 ------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV---- 179 (244)
Q Consensus 110 ------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l---- 179 (244)
....+.+++...++.+++. ..+..+..+..+...+...+.+.+|+.||++.++..++++.++|+.+
T Consensus 91 ~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l~i~~ 166 (416)
T PRK15099 91 STLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAAYYLC 166 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1126778888888777752 35566666666677888899999999999999999999999999866
Q ss_pred hc-CCchHHHHHHHHHHHHHHHHHHHHHH-H----------h--hccHHHHHHHHHHHHHHHHHHH
Q 046971 180 MQ-LGLIRTAVTSNFSWWVLVFGMFGYVA-S----------A--FSGPCEFVKLSVASGVMLCFSV 231 (244)
Q Consensus 180 ~~-lGv~Gaa~A~~is~~~~~ll~~~~~~-~----------~--~~~~~~~lkig~P~~~~~~~e~ 231 (244)
.. .|+.|+++|+.+++.+..+...++++ + . ++.+|++++.|.|...+....+
T Consensus 167 ~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~ 232 (416)
T PRK15099 167 YRLGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP 232 (416)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 39999999999999888765544332 0 1 2347999999999888766544
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.18 E-value=1.4e-08 Score=95.65 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHH--HH--H--------------
Q 046971 39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVALNYGLL--VI--L-------------- 99 (244)
Q Consensus 39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~~~~i~--~G--~-------------- 99 (244)
++..|++++.+.|...+++.....+-+|+.++|+ +|+++++.++.+.++.+.....+. .+ .
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~ 282 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKL 282 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence 5678999999999999999999999999999998 588899999999988764211111 11 1
Q ss_pred HHHHHHHH----H------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 046971 100 FLSVNRSF----V------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS 169 (244)
Q Consensus 100 ~~~~~~~~----~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~ 169 (244)
.....+.. . +.+..+++++..++..++ ...+...+++..+...+..........+++.||+|.++..+
T Consensus 283 ~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 360 (492)
T PRK10459 283 RVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWN 360 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHH
Confidence 11111111 1 112267888876654333 35577888999998888888899999999999999999999
Q ss_pred HHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHH
Q 046971 170 LASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYV 206 (244)
Q Consensus 170 li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~ 206 (244)
++.+++++|. +.+|+.|+++|+.+++.+......++.
T Consensus 361 ~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 361 VFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888886 567999999999999999888777666
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.79 E-value=2.6e-06 Score=79.79 Aligned_cols=153 Identities=21% Similarity=0.253 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH---HHHHHHHH--------------
Q 046971 38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL---NYGLLVIL-------------- 99 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~---~~~i~~G~-------------- 99 (244)
.++..|++++.++|..++.....+.+-+|+.++|+ +|+++++-++.+.++.... ..++...+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 57899999999999999999999999999999998 4878888888666655531 11111111
Q ss_pred H--HHHHHH----HHH------HHHHhHHHHHHHc-CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971 100 F--LSVNRS----FVI------SLINWKMLVLKLL-GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA 166 (244)
Q Consensus 100 ~--~~~~~~----~~~------~~~~~~~~il~~f-g~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m 166 (244)
. ....+. ..+ ....++++++..+ |.+.+ .+...+.+.+++.++..+.......+++.|+++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~---~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA---SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 0 111111 111 1127788887765 44332 177788888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHH-----hcCCchHHHHHHHHH
Q 046971 167 WVSLASLLVHIFV-----MQLGLIRTAVTSNFS 194 (244)
Q Consensus 167 ~i~li~~vv~i~l-----~~lGv~Gaa~A~~is 194 (244)
..+.++.++|+.+ +..|+.|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHH-HH
Confidence 9999888776666 888999999999 55
No 26
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.53 E-value=1.6e-06 Score=68.28 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=66.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 136 STWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
+++..++.++..+.....+.+++.||+|.++..++++.++|+++ |.+|..|+++|+.+++.+...+..++.+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999888 8999999999999999999888877776
No 27
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.48 E-value=2.8e-06 Score=75.73 Aligned_cols=105 Identities=22% Similarity=0.326 Sum_probs=80.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH------------
Q 046971 35 TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL------------ 99 (244)
Q Consensus 35 ~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~------------ 99 (244)
.+..++..|+++|+++|..++++.......+|+.+++++|+.++++++++.++.++. ..++..+.
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGD 287 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345677899999999999999999999999999999999999999999999887642 22233332
Q ss_pred ----HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHH
Q 046971 100 ----FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWL 139 (244)
Q Consensus 100 ----~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~ 139 (244)
.....++... ....++++++++|++||++.+.+..|+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1111111111 112778999999999999999999998764
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.24 E-value=0.00094 Score=62.81 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHhHHHHHHHc--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-----hcCC-
Q 046971 112 INWKMLVLKLL--GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-----MQLG- 183 (244)
Q Consensus 112 ~~~~~~il~~f--g~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l-----~~lG- 183 (244)
.++++++..++ |.|++..+.+.++++++.|..++..+...+.+++|++++-..|....++.++.-+.. ...|
T Consensus 75 ~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~ 154 (451)
T PF03023_consen 75 ILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQ 154 (451)
T ss_pred HHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 37888888887 568899999999999999999999999999999999999999999998887655543 4567
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHH---------h--hccHHHHHHHHHHHHHHH
Q 046971 184 --LIRTAVTSNFSWWVLVFGMFGYVAS---------A--FSGPCEFVKLSVASGVML 227 (244)
Q Consensus 184 --v~Gaa~A~~is~~~~~ll~~~~~~~---------~--~~~~~~~lkig~P~~~~~ 227 (244)
+.+.+++..++..+..++.+...++ . .++.|+++|...|..+..
T Consensus 155 ~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 211 (451)
T PF03023_consen 155 ENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSS 211 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHH
Confidence 8889999999999999888777651 1 134789999999988743
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.89 E-value=0.012 Score=49.97 Aligned_cols=179 Identities=17% Similarity=0.096 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH--------H--HHHHH----HHHH
Q 046971 49 VGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL--------F--LSVNR----SFVI 109 (244)
Q Consensus 49 ~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~--------~--~~~~~----~~~~ 109 (244)
+.=...+++.....+++...++.| +|+++.+-++....+.++. .+|+..+. . ..... ....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 84 (273)
T PF01943_consen 5 SLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDKKELRSAYFSSVLFL 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333456666677777778888887 6998888888888776642 22332222 1 01110 1110
Q ss_pred H----HH-HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-----
Q 046971 110 S----LI-NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV----- 179 (244)
Q Consensus 110 ~----~~-~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l----- 179 (244)
. .+ .....+...++.++. ...+........+..........++|+.++.+.....++...++...+
T Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (273)
T PF01943_consen 85 LLIFSLIFLLILLIASFFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLL 160 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 222333234443332 222333222222567788889999999999999998888887666544
Q ss_pred -hcCCchHHHHHHHHHHHHHHHHHHHHHH---------HhhccHHHHHHHHHHHHHHHHHHH
Q 046971 180 -MQLGLIRTAVTSNFSWWVLVFGMFGYVA---------SAFSGPCEFVKLSVASGVMLCFSV 231 (244)
Q Consensus 180 -~~lGv~Gaa~A~~is~~~~~ll~~~~~~---------~~~~~~~~~lkig~P~~~~~~~e~ 231 (244)
.+.++.+..++..++..+..++...+.+ ...+..|+++|.|.|........+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (273)
T PF01943_consen 161 FLGSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEILRFGLPLFLSSLLSW 222 (273)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788889999998888777766654 114578999999999998776654
No 30
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=97.87 E-value=5.5e-05 Score=71.64 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHHH---HHHHHHHHH--------------
Q 046971 39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGD--LELAAISIANNVVVA---LNYGLLVIL-------------- 99 (244)
Q Consensus 39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~--~alAa~~l~~~i~~~---~~~~i~~G~-------------- 99 (244)
.+..++++|+++|..+....+.-..-+-....|.+++ .++++.+++..+... ...++..+.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 8889999999999999999998999999999999985 588998888876653 122333332
Q ss_pred --HH----HHHHHHH------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 046971 100 --FL----SVNRSFV------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW 167 (244)
Q Consensus 100 --~~----~~~~~~~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~ 167 (244)
+. ....+.. ...+..++.+-..|+.|+|+.+...+-.....++........+.++..||.|..+...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 00 0000111 11226778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHH
Q 046971 168 VSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGM 202 (244)
Q Consensus 168 i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~ 202 (244)
+++.+. ++-+|. .++|+.|.|.+...+..+....+
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l 445 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVL 445 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHH
Confidence 998887 666776 67899999999999854444443
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=97.87 E-value=0.0054 Score=57.71 Aligned_cols=173 Identities=9% Similarity=0.092 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHH--------HH--
Q 046971 52 TIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL-------FLSVNRSF--------VI-- 109 (244)
Q Consensus 52 ~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~-------~~~~~~~~--------~~-- 109 (244)
..+++......+++....++| +|+++..-++.+..+.++. .+|+..++ ........ .+
T Consensus 14 ~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (492)
T PRK10459 14 TAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTLYWLNVGLGIVVFV 93 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777787 6999888888887776542 22333333 11111111 00
Q ss_pred HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH------hcCC
Q 046971 110 SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV------MQLG 183 (244)
Q Consensus 110 ~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l------~~lG 183 (244)
....+.+++-.+++. |+ ...++++..+..++..+....++.+|+..+.+.....+++..++...+ .+.|
T Consensus 94 ~~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~~~~g 168 (492)
T PRK10459 94 LVFLLSPLIADFYHN-PE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAFFWPG 168 (492)
T ss_pred HHHHHHHHHHHHcCC-hh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 111334555455543 43 234667777777778888889999999999998888777776544433 6788
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH----H----hhccHHHHHHHHHHHHHHHHH
Q 046971 184 LIRTAVTSNFSWWVLVFGMFGYVA----S----AFSGPCEFVKLSVASGVMLCF 229 (244)
Q Consensus 184 v~Gaa~A~~is~~~~~ll~~~~~~----~----~~~~~~~~lkig~P~~~~~~~ 229 (244)
+.+..++..++..+..+......+ . ..+.+|++++.|.|.......
T Consensus 169 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 169 ALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccceecHHHHHHHHhhhHHHHHHHHH
Confidence 989999999988877665433322 1 134578999999999875543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.66 E-value=0.027 Score=47.45 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=105.4
Q ss_pred HHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH----HHH--HhHHHHH
Q 046971 62 LFVITQAFAGH-LGDLELAAISIANNVVVALNYGLLVIL---------------FLSVNRSFVI----SLI--NWKMLVL 119 (244)
Q Consensus 62 ~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~~~~i~~G~---------------~~~~~~~~~~----~~~--~~~~~il 119 (244)
.+++...+++| +|+++.+-++....+..+...-...|+ .......... ... .+...+.
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVRSAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA 82 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778887 699999888888887765322112333 0111111111 111 2223333
Q ss_pred HHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH------hcCCchHHHHHHHH
Q 046971 120 KLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV------MQLGLIRTAVTSNF 193 (244)
Q Consensus 120 ~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l------~~lGv~Gaa~A~~i 193 (244)
.++++ ++ ...++....+..+...+....++.+|+.+|.+......+...++...+ .+.++.+..++..+
T Consensus 83 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
T PF13440_consen 83 YFFGD-PE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAFII 157 (251)
T ss_pred HHhCC-hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34443 22 335666677788888999999999999999999999988887666332 44577888888888
Q ss_pred HHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHH
Q 046971 194 SWWVLVFGMFGYVASA-----FSGPCEFVKLSVASGVMLCFSVQ 232 (244)
Q Consensus 194 s~~~~~ll~~~~~~~~-----~~~~~~~lkig~P~~~~~~~e~~ 232 (244)
+..+..+....+.+.. ..+.++..|.+.|........+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
T PF13440_consen 158 SALLALLISFYLLRRKLRLSFKFSWRRLLKYGLPFSLSSLLSWL 201 (251)
T ss_pred HHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8887777665544311 12234578999999887776654
No 33
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.26 E-value=0.14 Score=46.11 Aligned_cols=189 Identities=17% Similarity=0.107 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh---HHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHH---
Q 046971 41 ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDL---ELAAISIANNVVVALNYGLL-----VIL----FLSVNR--- 105 (244)
Q Consensus 41 ~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~---alAa~~l~~~i~~~~~~~i~-----~G~----~~~~~~--- 105 (244)
..+.+.+.-+|..++.....+.--+.+.-+++-.++ .+|++|++..+.-++ -+.+ .|+ +...++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~s~rsrr~~v 87 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVNSKRSRRKAV 87 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhcchhhhHHHH
Confidence 456788999999999999988888888888875544 489999999876431 1111 122 100000
Q ss_pred -H-----HHHH----HH---HhHHHH-HHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046971 106 -S-----FVIS----LI---NWKMLV-LKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLA 171 (244)
Q Consensus 106 -~-----~~~~----~~---~~~~~i-l~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li 171 (244)
+ .++. ++ -.+..+ -+.+|.+|++.+.+++-+.++.+.-++..+...+++.+-=+.++......++.
T Consensus 88 l~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~ 167 (345)
T PF07260_consen 88 LCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIA 167 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHH
Confidence 1 1110 11 233443 36689999999999999999998888888999999888877787777777766
Q ss_pred HHHHHHHH------hcC--------CchHHHHHHHHHHHHHHHHHHHHHH--H----h-------hccHHHHHHHHHHHH
Q 046971 172 SLLVHIFV------MQL--------GLIRTAVTSNFSWWVLVFGMFGYVA--S----A-------FSGPCEFVKLSVASG 224 (244)
Q Consensus 172 ~~vv~i~l------~~l--------Gv~Gaa~A~~is~~~~~ll~~~~~~--~----~-------~~~~~~~lkig~P~~ 224 (244)
..+..+++ .++ |+.| .++-...+.....+ .+|.. + . ...++++++...|-+
T Consensus 168 ~v~~qvV~v~~ll~~~l~~~~pllipil~-~y~g~~vr~t~v~L-Gy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~ 245 (345)
T PF07260_consen 168 DVIAQVVLVAILLSMHLEPQDPLLIPILA-LYAGIAVRFTIVCL-GYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLA 245 (345)
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHH-HHHHHHHHHHHHHH-HHHHHHhhhccccCCcccCCChhHHHHHHHHHHHH
Confidence 55444432 111 2211 11111222222222 22211 1 0 124789999999999
Q ss_pred HHHHHHHH
Q 046971 225 VMLCFSVQ 232 (244)
Q Consensus 225 ~~~~~e~~ 232 (244)
......+.
T Consensus 246 ~~~~tq~~ 253 (345)
T PF07260_consen 246 LVLATQRI 253 (345)
T ss_pred HHHHHHHH
Confidence 87777664
No 34
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=96.81 E-value=0.52 Score=45.30 Aligned_cols=185 Identities=15% Similarity=0.086 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh-HHHHHHHHHHHHHHH--HHH---HHHHH-------------
Q 046971 39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDL-ELAAISIANNVVVAL--NYG---LLVIL------------- 99 (244)
Q Consensus 39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~-alAa~~l~~~i~~~~--~~~---i~~G~------------- 99 (244)
.+..|+.+..+.=..++.+. +.+=|+.+..-+|+. .-.|+.+++++=|+. .++ +..+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~---G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~ 83 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRIL---GFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGE 83 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchh
Confidence 44455555555555444443 444455555557875 456999999988852 111 11111
Q ss_pred ---HHHHHHHH--H--------HHHHHhHHHHH-HHcCCC--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971 100 ---FLSVNRSF--V--------ISLINWKMLVL-KLLGQP--DDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK 163 (244)
Q Consensus 100 ---~~~~~~~~--~--------~~~~~~~~~il-~~fg~~--~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~ 163 (244)
....+... . ++..++++.+. ..++.. ++....+....+++.|.+++..+...+.+.+|+.++-.
T Consensus 84 ~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~ 163 (518)
T COG0728 84 EAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFF 163 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeec
Confidence 00111000 0 11116677777 444443 44444688888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH----H-hc-C-CchHHHHHHHHHHHHHHHHHHHHHH---------Hhh--ccHHHHHHHHHHHHH
Q 046971 164 VIAWVSLASLLVHIF----V-MQ-L-GLIRTAVTSNFSWWVLVFGMFGYVA---------SAF--SGPCEFVKLSVASGV 225 (244)
Q Consensus 164 ~~m~i~li~~vv~i~----l-~~-l-Gv~Gaa~A~~is~~~~~ll~~~~~~---------~~~--~~~~~~lkig~P~~~ 225 (244)
.|.+.-++-++.-|. + +. . -..+.++++.++-+...++.+..++ +.+ .+.|++++.-.|+.+
T Consensus 164 ~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l 243 (518)
T COG0728 164 IPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALL 243 (518)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHH
Confidence 988887777654442 2 21 2 2457888899998888888887776 112 368899999988876
Q ss_pred H
Q 046971 226 M 226 (244)
Q Consensus 226 ~ 226 (244)
.
T Consensus 244 ~ 244 (518)
T COG0728 244 G 244 (518)
T ss_pred H
Confidence 3
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=96.30 E-value=0.75 Score=42.95 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH-----------H-HHH
Q 046971 41 ESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL-----------F-LSV 103 (244)
Q Consensus 41 ~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~-----------~-~~~ 103 (244)
..+++.|=+.=...+++.....+++....++| +|+++.+-++.+..+..+. .+|+..+. . ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 34455555555666677777777777777777 6888887777777766542 22222332 0 011
Q ss_pred HHH-HH----HHHH--HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHH--HH
Q 046971 104 NRS-FV----ISLI--NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLAS--LL 174 (244)
Q Consensus 104 ~~~-~~----~~~~--~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~--~v 174 (244)
... .. .... ...-.+....... .+.....+++...+.+........++.+|+.++.+...+..+.. ..
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI---DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLL 160 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 111 11 1111 1111111111111 22344456677888888899999999999999999998884444 11
Q ss_pred HHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHH--H--------Hh--hccHHHHHHHHHHHHHHHHHHH
Q 046971 175 VHIFV-MQLGLIRTAVTSNFSWWVLVFGMFGYV--A--------SA--FSGPCEFVKLSVASGVMLCFSV 231 (244)
Q Consensus 175 v~i~l-~~lGv~Gaa~A~~is~~~~~ll~~~~~--~--------~~--~~~~~~~lkig~P~~~~~~~e~ 231 (244)
..... ......+..++..++......+...+. + .. ++.+++.++.|+|.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 230 (480)
T COG2244 161 AAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNF 230 (480)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHH
Confidence 11222 222344566666666666555544333 1 11 4578999999999988666554
No 36
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=93.69 E-value=0.43 Score=40.25 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHH
Q 046971 39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL-GDLELAAISIANNVVVA 90 (244)
Q Consensus 39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l-G~~alAa~~l~~~i~~~ 90 (244)
++..|+++|.+.|..++.+......-+|..+++++ |+++++-++++.++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~ 253 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASA 253 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999995 88899999999988764
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=88.82 E-value=24 Score=34.31 Aligned_cols=165 Identities=10% Similarity=0.059 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cC-hhHHHHHHHHHHHHHHH---HHHHH-------HH-H-------H-
Q 046971 43 KKLWHIVGPTIFNRVASYSLFVITQAFAGH--LG-DLELAAISIANNVVVAL---NYGLL-------VI-L-------F- 100 (244)
Q Consensus 43 k~ilki~~P~~l~~l~~~~~~~vd~~~vg~--lG-~~alAa~~l~~~i~~~~---~~~i~-------~G-~-------~- 100 (244)
+++++++.....+.+.--+..=-|.+.+.. +. .++-+.+++++++-++. .+... +. . .
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 566666777777777766666678888887 53 44678888887766541 11111 11 0 0
Q ss_pred ----------HHHH---HH-HHHHH--H----HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 046971 101 ----------LSVN---RS-FVISL--I----NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQL 160 (244)
Q Consensus 101 ----------~~~~---~~-~~~~~--~----~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G 160 (244)
..+. +. ..+.+ + .+++.++.+++.+.=....+.+-+++-...+|+++++-+.-++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 0000 11 11111 1 555667777654332223345555666678888999999999999998
Q ss_pred ChhHHHHHHHHHHHHH-------HHH-h-cCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 161 KTKVIAWVSLASLLVH-------IFV-M-QLGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 161 ~~~~~m~i~li~~vv~-------i~l-~-~lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
+++....-+-...+.. ..+ . ++|..|.-+|+++.-.+..+....+++
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~ 468 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIR 468 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8877555444333222 223 4 589999999999999999988877765
No 38
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=87.67 E-value=4 Score=33.97 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHH
Q 046971 45 LWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVA 90 (244)
Q Consensus 45 ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~ 90 (244)
.+|.+.|..++.+.....+-+|.++++. +|+++++.++++.++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~ 231 (251)
T PF13440_consen 185 LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASL 231 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 899999999999988774
No 39
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.95 E-value=1.3e+02 Score=28.90 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=68.7
Q ss_pred HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH-------HHHHHHHHHHHHHHH-hcCCc
Q 046971 113 NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKV-------IAWVSLASLLVHIFV-MQLGL 184 (244)
Q Consensus 113 ~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~-------~m~i~li~~vv~i~l-~~lGv 184 (244)
..++.++.+.|.++=....+..-+++-...+|+++++.+.-+++.+.++.+. -+..+.+=.+.|..| -.+|.
T Consensus 345 ~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~ 424 (530)
T KOG2864|consen 345 AYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGL 424 (530)
T ss_pred cccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhch
Confidence 5566777777765444444557778888899999999999999998876654 333444444666666 56688
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 046971 185 IRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 185 ~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
.|--+|+++...+..+....+++
T Consensus 425 ~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 425 VGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888877765554
No 40
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.51 E-value=13 Score=36.92 Aligned_cols=13 Identities=69% Similarity=0.915 Sum_probs=12.0
Q ss_pred CcccccchhhHHh
Q 046971 1 MEKHATQYDFIVA 13 (244)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (244)
||||-||||-+|-
T Consensus 709 MEKHK~qYDkiVE 721 (786)
T PF05483_consen 709 MEKHKHQYDKIVE 721 (786)
T ss_pred HHHhHHHHHHHHH
Confidence 8999999999993
No 41
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=23.43 E-value=63 Score=23.56 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=26.9
Q ss_pred ccccchhhHHhhhhhhhhhccCCCCCCCchHHhhhhHHHHHHHHH
Q 046971 3 KHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWH 47 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ilk 47 (244)
.|+|.-+...-|.=|-=+-.++|.+++..||.-+..-.+.|++++
T Consensus 49 RHATNSeLLcEAFLHAfTGQPLP~D~dl~kd~~d~ip~~~~~~m~ 93 (104)
T PF01340_consen 49 RHATNSELLCEAFLHAFTGQPLPTDDDLRKDRPDEIPAEAKRIME 93 (104)
T ss_dssp SS-SHHHHHHHHHHHHHH------TTGGGSTSGSSS-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHhcCCCCCChhhhhhcCCccchHHHHHHHH
Confidence 588887777766666667788999999888877777667766654
No 42
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=23.03 E-value=4.7e+02 Score=22.19 Aligned_cols=94 Identities=19% Similarity=0.177 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHH-H--
Q 046971 37 KFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANN-VVVALNYGLLVIL--FLSVNRSFV-I-- 109 (244)
Q Consensus 37 ~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~-i~~~~~~~i~~G~--~~~~~~~~~-~-- 109 (244)
..-+..+.+.|...|...+.+......++....+++ +|-+.--..++.-+ +..-++..+.-.+ ...+..... +
T Consensus 65 PLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitG 144 (215)
T PF04172_consen 65 PLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITG 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345677788888999999999999999999999998 46432222222222 1111122222222 111111111 1
Q ss_pred -HHHHhHHHHHHHcCCChHHHH
Q 046971 110 -SLINWKMLVLKLLGQPDDVAE 130 (244)
Q Consensus 110 -~~~~~~~~il~~fg~~~~v~~ 130 (244)
....++++++++++-++++..
T Consensus 145 i~Ga~~g~~llk~~~I~~~~A~ 166 (215)
T PF04172_consen 145 ILGAVLGPPLLKLLRIKDPVAR 166 (215)
T ss_pred hHHHHhHHHHHhHcccccHHHH
Confidence 122788999999987665443
No 43
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.60 E-value=37 Score=22.03 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=11.9
Q ss_pred cccccchhhHHhhhhhhhhhccCCC
Q 046971 2 EKHATQYDFIVAAVTLEDLASTVPS 26 (244)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (244)
+...|+||+| +|+.-++|+
T Consensus 4 ~~tgH~~DGI------~E~dnplP~ 22 (51)
T PF14715_consen 4 ETTGHEWDGI------RELDNPLPR 22 (51)
T ss_pred CcCCCccCCh------hhhcCCCCH
Confidence 3457888874 466666653
No 44
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=22.01 E-value=5.1e+02 Score=22.23 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHH-HHHHHHHHH-H-HHHHHH--HH--
Q 046971 37 KFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVA-LNYGLLVIL-F-LSVNRS--FV-- 108 (244)
Q Consensus 37 ~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~-~~~~i~~G~-~-~~~~~~--~~-- 108 (244)
+.-+..+.+.|...|+..+.+.-....++....+++ +|-+.--..++.-+=... ++..+.-.+ | ..+... .+
T Consensus 75 PLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitG 154 (226)
T TIGR00659 75 PLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTG 154 (226)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 445667778888899999999999999999999997 464322222333321111 122222211 1 111111 11
Q ss_pred HHHHHhHHHHHHHcCCChHHHH
Q 046971 109 ISLINWKMLVLKLLGQPDDVAE 130 (244)
Q Consensus 109 ~~~~~~~~~il~~fg~~~~v~~ 130 (244)
+....+++.++++++-++++.+
T Consensus 155 i~Ga~~g~~ll~~~~i~~~~A~ 176 (226)
T TIGR00659 155 LLGTVFGPMVLRYFRVKNEIAR 176 (226)
T ss_pred HHHHHHHHHHHHHcCCCcHHHH
Confidence 1122788999999987665443
No 45
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=20.45 E-value=2.9e+02 Score=18.74 Aligned_cols=24 Identities=13% Similarity=-0.026 Sum_probs=14.4
Q ss_pred chHHhhhhHHHHHHHHHHHHHHHH
Q 046971 31 DQSLTRKFWTESKKLWHIVGPTIF 54 (244)
Q Consensus 31 ~~~~~~~~~~~~k~ilki~~P~~l 54 (244)
-+++.+..|+..|+-..+++|..+
T Consensus 45 ~~~f~~~fk~nf~~~~~~~~~~~~ 68 (77)
T PF04854_consen 45 FRDFWRAFKQNFKQSLLLGLILLL 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666666666666544
Done!