Query 046971
Match_columns 244
No_of_seqs 117 out of 1230
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 9.2E-20 3.1E-24 166.7 17.2 200 35-234 4-258 (460)
2 3mkt_A Multi antimicrobial ext 99.7 7.5E-16 2.6E-20 140.6 15.7 173 35-207 230-444 (460)
3 3tx3_A Uncharacterized protein 14.8 4.1E+02 0.014 21.7 6.7 40 8-48 105-147 (249)
4 1cmb_A Met APO-repressor; DNA- 10.5 92 0.0032 21.7 1.1 44 3-46 49-92 (104)
5 2beq_D E2 glycoprotein; viral 6.3 2.4E+02 0.0083 17.2 1.6 13 229-241 36-48 (48)
6 2cwo_A P21, RNA silencing supp 5.5 3.6E+02 0.012 20.2 2.5 41 7-47 68-110 (197)
7 2imu_A Structural polyprotein 5.1 3.9E+02 0.013 15.9 1.9 16 38-53 3-18 (46)
8 1z9i_A Epidermal growth factor 4.1 6.1E+02 0.021 15.7 2.4 24 16-39 17-40 (53)
9 1ykh_B RNA polymerase II holoe 3.9 1E+03 0.036 17.2 4.1 26 8-33 64-89 (132)
10 1pi1_A MOB1A; mitotic EXIT net 3.7 7.4E+02 0.025 19.3 3.2 28 21-48 98-127 (185)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.83 E-value=9.2e-20 Score=166.67 Aligned_cols=200 Identities=18% Similarity=0.319 Sum_probs=164.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH------------
Q 046971 35 TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL------------ 99 (244)
Q Consensus 35 ~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~------------ 99 (244)
.+..+++.|+++|.++|..++++...+.+++|+.++||+|++++++++++.++.++ ...++..|.
T Consensus 4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567899999999999999999999999999999999999999999999998664 223333343
Q ss_pred ----HHHHHHHHHH---------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971 100 ----FLSVNRSFVI---------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA 166 (244)
Q Consensus 100 ----~~~~~~~~~~---------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m 166 (244)
.........+ ....+.++++.+++.++++.+.+..|+++..++.++..+...+++++|+.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 1222221111 112677888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHHH----------------hhccHHHHHHH
Q 046971 167 WVSLASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVAS----------------AFSGPCEFVKL 219 (244)
Q Consensus 167 ~i~li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~~----------------~~~~~~~~lki 219 (244)
..++++.++|+++ |++|+.|+++|+.+++++..++..+++++ .++.+|+++|.
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 9999999999887 26999999999999999999887766641 12457899999
Q ss_pred HHHHHHHHHHHHHHH
Q 046971 220 SVASGVMLCFSVQKI 234 (244)
Q Consensus 220 g~P~~~~~~~e~~~~ 234 (244)
|+|..++.+.++...
T Consensus 244 ~~p~~~~~~~~~~~~ 258 (460)
T 3mkt_A 244 GFPVAAALFFEVTLF 258 (460)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999888876543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.67 E-value=7.5e-16 Score=140.61 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=142.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH------------
Q 046971 35 TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL------------ 99 (244)
Q Consensus 35 ~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~------------ 99 (244)
.+..++..|+++|+++|..++++.......+|+.+++++|++++|+++++.++.++. ..++..+.
T Consensus 230 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 230 HKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp CSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345567889999999999999999999999999999999999999999999998752 12222222
Q ss_pred ----HHHHHH----HHH------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 046971 100 ----FLSVNR----SFV------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVI 165 (244)
Q Consensus 100 ----~~~~~~----~~~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~ 165 (244)
.....+ ... +.+..+++++..+|..|+++.+.+..++++..++.++..+...+.++++|.||++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 001111 111 122288999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHH-----hc-------CCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971 166 AWVSLASL-LVHIFV-----MQ-------LGLIRTAVTSNFSWWVLVFGMFGYVA 207 (244)
Q Consensus 166 m~i~li~~-vv~i~l-----~~-------lGv~Gaa~A~~is~~~~~ll~~~~~~ 207 (244)
+++++++. ++|+|+ +. +|+.|+|+|+.+++.+..++..++++
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 899887 44 99999999999999998887765543
No 3
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=14.83 E-value=4.1e+02 Score=21.69 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=22.1
Q ss_pred hhhHHhhhhhhhhhccCCCCCC--C-chHHhhhhHHHHHHHHHH
Q 046971 8 YDFIVAAVTLEDLASTVPSQDD--S-DQSLTRKFWTESKKLWHI 48 (244)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~k~ilki 48 (244)
||-+-..||-+ +...+|+++. + -+|.-+..+++.|++...
T Consensus 105 ~~~LAE~VE~~-l~g~~~~~~~~~~~~~~l~r~l~~~l~~l~~~ 147 (249)
T 3tx3_A 105 NGLLAEKVERY-ESGESLGDEGFLGLFKDIPRTLKREMQKLMYY 147 (249)
T ss_dssp HHHHHHHHHHH-HTTCCCTTCSSGGGSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HcCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 56676667653 3444444332 1 345556777777776543
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=10.54 E-value=92 Score=21.70 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=29.0
Q ss_pred ccccchhhHHhhhhhhhhhccCCCCCCCchHHhhhhHHHHHHHH
Q 046971 3 KHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLW 46 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 46 (244)
.|+|.-....-|.=|-=+-.++|.+++..||--+..-++.|.++
T Consensus 49 RHATNSELLCEAFLHA~TGQPLP~D~Dl~Kd~~d~iP~~ak~~m 92 (104)
T 1cmb_A 49 RHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIM 92 (104)
T ss_dssp SCCSHHHHHHHHHHHHHHCCCCCCGGGGBTTSCSCSCHHHHHHH
T ss_pred hhcccHHHHHHHHHHHhcCCCCCCchhhhhcCCccchHHHHHHH
Confidence 47776666555555555667889998877776555555555554
No 5
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=6.35 E-value=2.4e+02 Score=17.18 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhhh
Q 046971 229 FSVQKIYQTSEKW 241 (244)
Q Consensus 229 ~e~~~~~~~~~~~ 241 (244)
.||..-||+--||
T Consensus 36 Le~Ln~~E~yiKW 48 (48)
T 2beq_D 36 LQELGKYEQYIKX 48 (48)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHhchhheeecC
Confidence 4666667776666
No 6
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical binding protein, RNA binding protein; 3.30A {Beet yellows virus}
Probab=5.53 E-value=3.6e+02 Score=20.20 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=19.2
Q ss_pred chhhHHhhhhhhhhhccCCCCCCCchHH--hhhhHHHHHHHHH
Q 046971 7 QYDFIVAAVTLEDLASTVPSQDDSDQSL--TRKFWTESKKLWH 47 (244)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~ilk 47 (244)
+++-.+..|++.|--..-|+++++...+ .....++.+.++|
T Consensus 68 ~fnhllvtvehrewme~hp~qss~lr~psr~gemlkeiraflk 110 (197)
T 2cwo_A 68 SFNHLLVTVEHREWMEQHPNQSSKLRVPSRIGEMLKEIRAFLK 110 (197)
T ss_dssp HHHHHHHHHHHHHHTCC------------CHHHHHHHHHHHHT
T ss_pred hhhheeeeehHHHHHHhCcCccccccCchHHHHHHHHHHHHhe
Confidence 4556777889999888888888866544 3334444454444
No 7
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=5.13 E-value=3.9e+02 Score=15.93 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 046971 38 FWTESKKLWHIVGPTI 53 (244)
Q Consensus 38 ~~~~~k~ilki~~P~~ 53 (244)
.++..|.+.|++.|..
T Consensus 3 ~~Diir~irr~a~PVv 18 (46)
T 2imu_A 3 FKDIIRAIRRIAVPVV 18 (46)
T ss_dssp HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhhhhhh
Confidence 3567788888888874
No 8
>1z9i_A Epidermal growth factor receptor; juxtamembrane structure EGFR micelle, transferase; NMR {Homo sapiens}
Probab=4.15 E-value=6.1e+02 Score=15.69 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=17.6
Q ss_pred hhhhhhccCCCCCCCchHHhhhhH
Q 046971 16 TLEDLASTVPSQDDSDQSLTRKFW 39 (244)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ 39 (244)
+.|+.+++.|+.+.-|+....-++
T Consensus 17 ~~E~~EPL~Psg~~pN~a~lRI~K 40 (53)
T 1z9i_A 17 ERELVEPLTPSGEAPNQALLRILK 40 (53)
T ss_dssp GGGSSSSSCSSSSCHHHHHHHHHH
T ss_pred cCcccCcCCcCCCCcchHHHhhcc
Confidence 568889999988888886544443
No 9
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=3.94 E-value=1e+03 Score=17.16 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=20.6
Q ss_pred hhhHHhhhhhhhhhccCCCCCCCchH
Q 046971 8 YDFIVAAVTLEDLASTVPSQDDSDQS 33 (244)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (244)
=|.|..+=++|.|-.-+|..+.++++
T Consensus 64 ~dli~k~kqIe~LIdsLP~~~~see~ 89 (132)
T 1ykh_B 64 TDIILKTRQINKLIDSLPGVDVSAEE 89 (132)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 37788888899999999988876553
No 10
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=3.69 E-value=7.4e+02 Score=19.26 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred hccCCCCCCC--chHHhhhhHHHHHHHHHH
Q 046971 21 ASTVPSQDDS--DQSLTRKFWTESKKLWHI 48 (244)
Q Consensus 21 ~~~~~~~~~~--~~~~~~~~~~~~k~ilki 48 (244)
+..-|.+... .+++.+..++++|+++|+
T Consensus 98 ~~iFPs~~~~~fp~~f~~~~~~I~rRLfRV 127 (185)
T 1pi1_A 98 ETLFPSKIGVPFPKNFMSVAKTILKRLFRV 127 (185)
T ss_dssp TTTSCSSTTSCCCTTHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCCChhHHHHHHHHHHHHHHH
Done!