Query 046971
Match_columns 244
No_of_seqs 117 out of 1230
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 10:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cmca_ a.43.1.5 (A:) Met repr 14.6 27 0.002 22.6 1.1 45 3-47 49-93 (104)
2 d1rp3b_ a.137.11.1 (B:) Anti-s 8.7 67 0.0049 20.2 1.4 32 14-45 35-66 (87)
3 d2csba3 a.60.2.4 (A:410-464) T 8.2 65 0.0048 18.0 1.1 21 115-135 15-35 (55)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 6.2 2.8E+02 0.021 18.5 4.1 27 7-33 62-88 (129)
5 d2tpta1 a.46.2.1 (A:1-70) Thym 5.0 3.2E+02 0.024 15.6 4.0 28 61-88 22-49 (70)
6 d3dhwa1 f.58.1.1 (A:6-208) D-m 4.7 5E+02 0.037 17.6 5.9 57 16-72 103-160 (203)
7 d2ahob1 a.60.14.1 (B:85-175) E 4.5 4.1E+02 0.03 16.2 4.1 23 2-24 47-70 (91)
8 d1uoua1 a.46.2.1 (A:33-100) Th 4.2 3.7E+02 0.027 15.3 4.0 28 61-88 22-49 (68)
9 d2hwna1 a.31.1.1 (A:5-43) cAMP 4.0 2.8E+02 0.021 14.6 2.1 17 123-139 19-35 (39)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 3.7 7.5E+02 0.054 18.1 18.2 23 180-202 405-427 (447)
No 1
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=14.57 E-value=27 Score=22.63 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=30.1
Q ss_pred ccccchhhHHhhhhhhhhhccCCCCCCCchHHhhhhHHHHHHHHH
Q 046971 3 KHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWH 47 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ilk 47 (244)
.|+|.-....-|.=|-=+-.++|.+++..||.-+..-.+.|.+++
T Consensus 49 RHATNSELLCEAFLHAfTGQPLP~D~Dl~Kd~~~~iP~~~k~~m~ 93 (104)
T d1cmca_ 49 RHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMR 93 (104)
T ss_dssp SCCSHHHHHHHHHHHHHHCCCCCCGGGGBTTSCSCSCHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHhcCCCCCCchhhhhcCcccccHHHHHHHH
Confidence 477776665555555566678999999888766555556665543
No 2
>d1rp3b_ a.137.11.1 (B:) Anti-sigma factor FlgM {Aquifex aeolicus [TaxId: 63363]}
Probab=8.67 E-value=67 Score=20.19 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=22.4
Q ss_pred hhhhhhhhccCCCCCCCchHHhhhhHHHHHHH
Q 046971 14 AVTLEDLASTVPSQDDSDQSLTRKFWTESKKL 45 (244)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i 45 (244)
-|+++..+-..-+.+.+|||+.+.+.+.--++
T Consensus 35 kVelS~iA~~~~~nd~E~kD~skKvkeiKekI 66 (87)
T d1rp3b_ 35 KVTLSKIAQELSKNDVEEKDLEKKVKELKEKI 66 (87)
T ss_dssp HHHHHHHHHHHTTTCCCCSSHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 35677777777777778888877766554433
No 3
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.19 E-value=65 Score=17.98 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.2
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 046971 115 KMLVLKLLGQPDDVAELFGMV 135 (244)
Q Consensus 115 ~~~il~~fg~~~~v~~~a~~Y 135 (244)
++.+++.||.++.+-+.+.+|
T Consensus 15 aerllrafgnpervkqlaref 35 (55)
T d2csba3 15 AERLLRAFGNPERVKQLAREF 35 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 466788899888888877765
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.18 E-value=2.8e+02 Score=18.51 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.1
Q ss_pred chhhHHhhhhhhhhhccCCCCCCCchH
Q 046971 7 QYDFIVAAVTLEDLASTVPSQDDSDQS 33 (244)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (244)
.-|.|+.+=++|.|-.-+|..+.+++.
T Consensus 62 A~dii~kakqId~LI~sLP~~~~see~ 88 (129)
T d1ykhb1 62 STDIILKTRQINKLIDSLPGVDVSAEE 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCHHH
T ss_pred HHHHHHHHhhHHHHHHhCCCCCCCHHH
Confidence 347888899999999999998877554
No 5
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=4.98 E-value=3.2e+02 Score=15.64 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHH
Q 046971 61 SLFVITQAFAGHLGDLELAAISIANNVV 88 (244)
Q Consensus 61 ~~~~vd~~~vg~lG~~alAa~~l~~~i~ 88 (244)
+..+++.++=|++++.+++++-.+...-
T Consensus 22 ~~~~~~~i~~g~~~d~qi~afL~al~~k 49 (70)
T d2tpta1 22 IRFFINGIRDNTISEGQIAALAMTIFFH 49 (70)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHc
Confidence 3456778888889888888887776643
No 6
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=4.72 E-value=5e+02 Score=17.55 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=35.9
Q ss_pred hhhhhhccCCCCCCCchHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046971 16 TLEDLASTVPSQDDSDQSLTRKFWTESKK-LWHIVGPTIFNRVASYSLFVITQAFAGH 72 (244)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-ilki~~P~~l~~l~~~~~~~vd~~~vg~ 72 (244)
..+.++.-+++.+|.-+++--+-++.+++ ++..+.|..+..........+....+..
T Consensus 103 ~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~ 160 (203)
T d3dhwa1 103 VENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG 160 (203)
T ss_dssp HHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcccchHHHHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777666664444555544 5677777777777666555555544443
No 7
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.48 E-value=4.1e+02 Score=16.24 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=15.2
Q ss_pred cccccchhhHHh-hhhhhhhhccC
Q 046971 2 EKHATQYDFIVA-AVTLEDLASTV 24 (244)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~ 24 (244)
++.+|-||..-. +.++++.....
T Consensus 47 ~kyg~lY~AFe~a~~~g~~~l~~~ 70 (91)
T d2ahob1 47 AKYGDPITAIEKAVKEGEKILIDA 70 (91)
T ss_dssp TTTSCHHHHHHHHHHSCTHHHHTT
T ss_pred HHHCcHHHHHHHHHhcChhhHhhC
Confidence 577889996654 44667765544
No 8
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.21 E-value=3.7e+02 Score=15.29 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHH
Q 046971 61 SLFVITQAFAGHLGDLELAAISIANNVV 88 (244)
Q Consensus 61 ~~~~vd~~~vg~lG~~alAa~~l~~~i~ 88 (244)
+..+++.++-|++.+.+++++-.+...-
T Consensus 22 ~~~~~~~i~~g~~s~~qi~afL~al~~k 49 (68)
T d1uoua1 22 IRGFVAAVVNGSAQGAQIGAMLMAIRLR 49 (68)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 3466777888888888888887776643
No 9
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.96 E-value=2.8e+02 Score=14.57 Aligned_cols=17 Identities=29% Similarity=0.263 Sum_probs=13.1
Q ss_pred CCChHHHHHHHHHHHHH
Q 046971 123 GQPDDVAELFGMVSTWL 139 (244)
Q Consensus 123 g~~~~v~~~a~~Yl~~~ 139 (244)
.+++++.+.+..|+.-+
T Consensus 19 ~qP~di~~faa~YF~~L 35 (39)
T d2hwna1 19 QQPPDLVDFAVEYFTRL 35 (39)
T ss_dssp HCCSCHHHHHHHHHHHH
T ss_pred HCCchHHHHHHHHHHHH
Confidence 37788888899888644
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.69 E-value=7.5e+02 Score=18.05 Aligned_cols=23 Identities=9% Similarity=-0.214 Sum_probs=10.6
Q ss_pred hcCCchHHHHHHHHHHHHHHHHH
Q 046971 180 MQLGLIRTAVTSNFSWWVLVFGM 202 (244)
Q Consensus 180 ~~lGv~Gaa~A~~is~~~~~ll~ 202 (244)
...|..+..+.......+..++.
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHH
Confidence 34565555444444444444433
Done!