Query 046974
Match_columns 212
No_of_seqs 175 out of 290
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 9.3E-90 3.2E-94 583.0 16.1 186 1-186 1-188 (189)
2 4a1a_O RPL19, 60S ribosomal pr 100.0 2.6E-87 8.8E-92 566.5 14.0 177 1-177 1-179 (185)
3 3iz5_T 60S ribosomal protein L 100.0 5.4E-87 1.8E-91 572.3 14.5 198 1-201 1-204 (209)
4 2zkr_p 60S ribosomal protein L 100.0 3.8E-85 1.3E-89 557.1 10.7 185 1-185 1-187 (196)
5 4a17_O RPL19, 60S ribosomal pr 100.0 5.1E-83 1.8E-87 540.0 16.8 165 1-165 1-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 1.9E-77 6.5E-82 492.5 13.1 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 3.3E-77 1.1E-81 491.6 14.4 146 1-146 1-146 (150)
8 3jyw_P 60S ribosomal protein L 100.0 2.7E-73 9.4E-78 478.2 8.3 154 2-155 1-154 (176)
9 1fme_A FSD-EY peptide; beta-BE 65.0 2.3 7.8E-05 25.8 1.0 21 126-146 6-26 (28)
10 3fx0_A NF-kappa-B essential mo 33.1 1.1E+02 0.0038 23.3 6.1 49 136-184 41-90 (96)
11 3jsv_C NF-kappa-B essential mo 28.2 74 0.0025 24.2 4.3 47 137-183 27-74 (94)
12 2jt1_A PEFI protein; solution 26.0 37 0.0013 24.1 2.2 35 26-60 24-64 (77)
13 2ab3_A ZNF29; zinc finger prot 21.4 37 0.0013 16.9 1.1 15 129-143 11-25 (29)
14 2m0d_A Zinc finger and BTB dom 20.6 58 0.002 16.1 1.8 15 129-143 10-24 (30)
15 1ard_A Yeast transcription fac 20.1 72 0.0025 15.7 2.2 16 129-144 9-24 (29)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=9.3e-90 Score=583.02 Aligned_cols=186 Identities=53% Similarity=0.889 Sum_probs=183.0
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE 160 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae 160 (212)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhH--HHHhccCCCCCCCCC
Q 046974 161 AKRAKNKASRS--EERLAKGPGGAPTTA 186 (212)
Q Consensus 161 Arr~k~k~~r~--eerl~~k~~e~~~~~ 186 (212)
|+|+|++++++ +|++|++++||++++
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~~~~~~ 188 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDALLKED 188 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999 999999999998753
No 2
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=2.6e-87 Score=566.45 Aligned_cols=177 Identities=64% Similarity=1.011 Sum_probs=145.8
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE 160 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae 160 (212)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhH--HHHhcc
Q 046974 161 AKRAKNKASRS--EERLAK 177 (212)
Q Consensus 161 Arr~k~k~~r~--eerl~~ 177 (212)
|+|+|++++++ ++++|.
T Consensus 161 a~r~k~k~~r~~~~~~~~~ 179 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQI 179 (185)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 99999999999 787763
No 3
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=5.4e-87 Score=572.29 Aligned_cols=198 Identities=80% Similarity=1.144 Sum_probs=174.3
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CcchHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE 160 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae 160 (212)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|++||+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhH--HHH----hccCCCCCCCCCCCCCCCCcccCcccc
Q 046974 161 AKRAKNKASRS--EER----LAKGPGGAPTTAPPAAASRSTEVPKKF 201 (212)
Q Consensus 161 Arr~k~k~~r~--eer----l~~k~~e~~~~~~~~~~~~~~~~~~~~ 201 (212)
|+|+|++++++ +++ +++-...-..+++ .|+++|+++.+
T Consensus 161 Arr~k~k~~r~rr~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 204 (209)
T 3iz5_T 161 AKRAKSKASRERKIARREERLAPGPERSCTSTS---GCSSSCGTKEG 204 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccccccC---Ccccccccccc
Confidence 99999999998 555 2222222222222 47888888765
No 4
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.8e-85 Score=557.15 Aligned_cols=185 Identities=65% Similarity=1.040 Sum_probs=150.5
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||+++||||||+++||++||||||||+||+||+|+.+|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE 160 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae 160 (212)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++|+++|+||||
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhH--HHHhccCCCCCCCC
Q 046974 161 AKRAKNKASRS--EERLAKGPGGAPTT 185 (212)
Q Consensus 161 Arr~k~k~~r~--eerl~~k~~e~~~~ 185 (212)
|+|++++++++ +++++++.++|+..
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~~~~~ 187 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEEIIKT 187 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 89999999888763
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=5.1e-83 Score=540.04 Aligned_cols=165 Identities=61% Similarity=0.973 Sum_probs=162.1
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+|||++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE 160 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae 160 (212)
|+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++|+|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 046974 161 AKRAK 165 (212)
Q Consensus 161 Arr~k 165 (212)
|.-.-
T Consensus 161 a~~~~ 165 (185)
T 4a17_O 161 XXXXX 165 (185)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97654
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=1.9e-77 Score=492.54 Aligned_cols=149 Identities=34% Similarity=0.546 Sum_probs=142.8
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEK 149 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek 149 (212)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999884
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-77 Score=491.55 Aligned_cols=146 Identities=42% Similarity=0.774 Sum_probs=144.6
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974 1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK 80 (212)
Q Consensus 1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk 80 (212)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHH
Q 046974 81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSR 146 (212)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~k 146 (212)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||+...
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~ 146 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHG 146 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHS
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=2.7e-73 Score=478.17 Aligned_cols=154 Identities=56% Similarity=0.928 Sum_probs=151.1
Q ss_pred CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCC
Q 046974 2 VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKR 81 (212)
Q Consensus 2 ~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkR 81 (212)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+|||++++++++|||+|+|+|
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhh
Q 046974 82 RGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKIL 155 (212)
Q Consensus 82 KGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L 155 (212)
+||+|||||+|++||+|||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||+.++|+++.-.-
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~ 154 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAA 154 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHH
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987544
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=64.98 E-value=2.3 Score=25.83 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.5
Q ss_pred hhcCCccccHHHHHHHHHHHH
Q 046974 126 KVKGNVFKNKRVLMESIHKSR 146 (212)
Q Consensus 126 kaKGn~Fknk~~L~e~I~k~k 146 (212)
+-||-+|+|-..|.++|++.+
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999998754
No 10
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=33.09 E-value=1.1e+02 Score=23.33 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhH-HHHhccCCCCCCC
Q 046974 136 RVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS-EERLAKGPGGAPT 184 (212)
Q Consensus 136 ~~L~e~I~k~kaek~r~k~L~dQaeArr~k~k~~r~-eerl~~k~~e~~~ 184 (212)
.-|.+-|.+..++..+-..|..|++.-++-=.+.|. .|+++..|+++..
T Consensus 41 deLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ 90 (96)
T 3fx0_A 41 DKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQE 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 346677777888888888999999999888777777 8999999988764
No 11
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.17 E-value=74 Score=24.20 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhH-HHHhccCCCCCC
Q 046974 137 VLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS-EERLAKGPGGAP 183 (212)
Q Consensus 137 ~L~e~I~k~kaek~r~k~L~dQaeArr~k~k~~r~-eerl~~k~~e~~ 183 (212)
-|.+-|.+..++..+-..|..|++.-++==...|. .|+++..++++.
T Consensus 27 ~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~ 74 (94)
T 3jsv_C 27 KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666777777777778899999888877666666 788888887653
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.97 E-value=37 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.4
Q ss_pred ccchhHHHhhh------hhHHHHhhhhcCceeecCCCCCCh
Q 046974 26 PNEVNEISMAN------SRQNIRKLVKGGFIIRKPTKIHSR 60 (212)
Q Consensus 26 Pne~~eIa~A~------SRq~IRkLIkdGlIi~Kpv~~hSR 60 (212)
|=.+.||+++. -|.++..|.+.|+|.+-|..-.++
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~ 64 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVP 64 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSC
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcH
Confidence 44566666543 488999999999999988544444
No 13
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=21.40 E-value=37 Score=16.91 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.6
Q ss_pred CCccccHHHHHHHHH
Q 046974 129 GNVFKNKRVLMESIH 143 (212)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (212)
|..|.+.+.|..|+.
T Consensus 11 ~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 11 GRSFNDRRKLNRHKK 25 (29)
T ss_dssp CEEESSHHHHHHHHG
T ss_pred cCccCCHHHHHHHHH
Confidence 678999999999863
No 14
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.62 E-value=58 Score=16.11 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.9
Q ss_pred CCccccHHHHHHHHH
Q 046974 129 GNVFKNKRVLMESIH 143 (212)
Q Consensus 129 Gn~Fknk~~L~e~I~ 143 (212)
|..|.+...|..|+.
T Consensus 10 ~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 10 GRSFSDPTSKMRHLE 24 (30)
T ss_dssp CCEESCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 678999999999974
No 15
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.06 E-value=72 Score=15.71 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=13.5
Q ss_pred CCccccHHHHHHHHHH
Q 046974 129 GNVFKNKRVLMESIHK 144 (212)
Q Consensus 129 Gn~Fknk~~L~e~I~k 144 (212)
|..|.+...|..|+..
T Consensus 9 ~~~f~~~~~l~~H~~~ 24 (29)
T 1ard_A 9 TRAFARQEHLKRHYRS 24 (29)
T ss_dssp CCBCSSHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHH
Confidence 7789999999999653
Done!