BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046976
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PK +V I+GAG++G+S A L + GH+V ++
Sbjct: 46 PK-RVVIVGAGMSGLSAAYVLANAGHQVTVL 75
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PK V I+GAG+AG+S A L GH+V ++
Sbjct: 33 PK-HVVIVGAGMAGLSAAYVLAGAGHQVTVL 62
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 55 HYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
H + K V IIG G AG S A +L G ++LL+
Sbjct: 1 HMKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLV 35
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLL 88
+AIIG G+AG+S A L GH+V L
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHL 30
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 67 GAGLAGMSTAVELLDHGHEVLL 88
GAG G TAVELL HG++V++
Sbjct: 13 GAGYIGSHTAVELLAHGYDVVI 34
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
+ I+GAG GM+TAV L+ G++ LL+
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYDDLLL 28
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 4 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 33
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
H198a Variant From Acidithiobacillus Ferrooxidans In
Complex With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide
And Decylubiquinone
Length = 437
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate
Of Porcine Kidney D-Amino Acid Oxidase
pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate
Of Porcine Kidney D-Amino Acid Oxidase
Length = 340
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
++V +IGAG+ G+STA+ + + H VL
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans
In Complex With Decylubiquinone
Length = 437
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 63 VAIIGAGLAGMSTAVEL---LDHGHEVLLI 89
V I+GAG GM A E+ L GHEV LI
Sbjct: 4 VVILGAGTGGMPAAYEMKEALGSGHEVTLI 33
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PK V ++GAG++G+S A L GH+V ++
Sbjct: 33 PK-HVVVVGAGMSGLSAAYVLSGAGHQVTVL 62
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PK V ++GAG++G+S A L GH+V ++
Sbjct: 33 PK-HVVVVGAGMSGLSAAYVLAGAGHKVTVL 62
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney
pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1VE9|A Chain A, Porcine Kidney D-amino Acid Oxidase
pdb|1VE9|B Chain B, Porcine Kidney D-amino Acid Oxidase
Length = 347
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
++V +IGAG+ G+STA+ + + H VL
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27
>pdb|1LU9|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LUA|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
Length = 287
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 24 GPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHG 83
GP F V LD+N S+ + A L + K V + G G GM +A L G
Sbjct: 85 GP-FRVSCMLDSNGSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEG 143
Query: 84 HEVLL 88
EV+L
Sbjct: 144 AEVVL 148
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|G Chain G, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|J Chain J, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2E48|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E49|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E49|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E49|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E49|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E4A|A Chain A, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E4A|B Chain B, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E4A|C Chain C, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E4A|D Chain D, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E82|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|2E82|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|2E82|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|2E82|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|3CUK|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
pdb|3CUK|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
pdb|3CUK|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
pdb|3CUK|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
Length = 347
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
++V +IGAG+ G+STA+ + + H VL
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
pdb|3G3E|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
pdb|3G3E|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
pdb|3G3E|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
Length = 351
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
++V +IGAG+ G+STA+ + + H VL
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex
With Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PEH V IIG+G AG+S A+ L D H+V+++
Sbjct: 5 PEH----SCDVLIIGSGAAGLSLALRLADQ-HQVIVL 36
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 53 PEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PEH V IIG+G AG+S A+ L D H+V+++
Sbjct: 5 PEH----SCDVLIIGSGAAGLSLALRLADQ-HQVIVL 36
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
GP ++ I+GAG+AG+ L GH+V ++
Sbjct: 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTIL 73
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Id Mar208
Length = 425
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEV 86
K +IGAGL G+ +A L GHEV
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEV 26
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
++ V ++GAGL G+STA+ L G VL++
Sbjct: 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVV 34
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+VA+IGAG++G++ A +L HG V +
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVF 42
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K+ I+GAG +G +L + GH+V +I
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHII 32
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K+ I+GAG +G +L + GH+V +I
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHII 32
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K+ I+GAG +G +L + GH+V +I
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHII 32
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
+ IIG+G+AG+S V L G +V LI
Sbjct: 2 IYIIGSGIAGLSAGVALRRAGKKVTLI 28
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
K +A++GAG AG++ A+ GH+V L
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTL 401
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
G V +IG G++G+S A L ++G VL++
Sbjct: 11 GHMFDVVVIGGGISGLSAAKLLTEYGVSVLVL 42
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K KV IIGAG+AG+ A L +G + L+
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K KV IIGAG+AG+ A L +G + L+
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K KV IIGAG+AG+ A L +G + L+
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K KV IIGAG+AG+ A L +G + L+
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K KV IIGAG+AG+ A L +G + L+
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 62 KVAIIGAGLAGMSTAVELLDHG 83
KVA+IGAG G S A L++ G
Sbjct: 7 KVALIGAGFVGSSYAFALINQG 28
>pdb|2RQA|A Chain A, Solution Structure Of Lgp2 Ctd
Length = 137
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 4 SLLL--PATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVN 43
S+LL P + KWSRV P F N+SD+S++
Sbjct: 96 SMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENLSDLSLD 137
>pdb|3EQT|A Chain A, Crystal Structure Of Human Lgp2 C-Terminal Domain In
Complex With Dsrna
pdb|3EQT|B Chain B, Crystal Structure Of Human Lgp2 C-Terminal Domain In
Complex With Dsrna
Length = 145
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 4 SLLL--PATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVN 43
S+LL P + KWSRV P F N+SD+S++
Sbjct: 97 SMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENLSDLSLD 138
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 62 KVAIIGAGLAGMSTAVELLDHG 83
KVA+IGAG G S A L++ G
Sbjct: 7 KVALIGAGFVGSSYAFALINQG 28
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 65 IIGAGLAGMSTAVELLDHGHEVLL 88
+IG G GM++A E HG VLL
Sbjct: 47 VIGGGPGGMASAKEAAAHGARVLL 70
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|3HWR|A Chain A, Crystal Structure Of PaneAPBA FAMILY KETOPANTOATE
REDUCTASE (Yp_299159.1) From Ralstonia Eutropha Jmp134
At 2.15 A Resolution
pdb|3HWR|B Chain B, Crystal Structure Of PaneAPBA FAMILY KETOPANTOATE
REDUCTASE (Yp_299159.1) From Ralstonia Eutropha Jmp134
At 2.15 A Resolution
Length = 318
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
KVAI GAG G L GHEV+LI
Sbjct: 21 KVAIXGAGAVGCYYGGXLARAGHEVILI 48
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 GAGLAGMSTAVELLDHGHEVLLI 89
G+G G T V+LL +GH+V+++
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
Length = 245
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLL 88
K+A++G G G + A L D GHEV +
Sbjct: 21 KIAVLGTGTVGRTXAGALADLGHEVTI 47
>pdb|2W4R|A Chain A, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|B Chain B, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|C Chain C, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|D Chain D, Crystal Structure Of The Regulatory Domain Of Human Lgp2
Length = 142
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 4 SLLL--PATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVN 43
S+LL P + KWSRV P F N+SD+S++
Sbjct: 101 SMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENLSDLSLD 142
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 53 PEHYRGPKLK--VAIIGAGLAGMSTAVELLDHGHEVLL 88
PE +R K K V I+GAG +G A L++ G+ V L
Sbjct: 380 PEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHL 417
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 53 PEHYRGPKLK--VAIIGAGLAGMSTAVELLDHGHEVLL 88
PE +R K K V I+GAG +G A L++ G+ V L
Sbjct: 380 PEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHL 417
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLL 88
VA+IG+G G A HGH+VLL
Sbjct: 8 VAVIGSGTMGAGIAEVAASHGHQVLL 33
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
GP+ V ++GAG++G+S A L + G LLI
Sbjct: 4 GPR--VIVVGAGMSGISAAKRLSEAGITDLLI 33
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 58 GPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
GP+ V ++GAG++G+S A L + G LLI
Sbjct: 4 GPR--VIVVGAGMSGISAAKRLSEAGITDLLI 33
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEV 86
V+I+GAG G + +V L+D+G+EV
Sbjct: 3 VSILGAGAMGSALSVPLVDNGNEV 26
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
V +IG G++G+S A L ++G VL++
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVL 31
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLLI 89
V +IG G++G+S A L ++G VL++
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVL 31
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
+K+A+IG L G +L GHEV+
Sbjct: 1 MKIAVIGQSLFGQEVYCQLRKEGHEVV 27
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 65 IIGAGLAGMSTAVELLDHGHEVLL 88
+IGAG+AG ST L HG V+L
Sbjct: 14 VIGAGIAGASTGYWLSAHGRVVVL 37
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With
6- Formyltetrahydropterin
Length = 329
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87
+K+A+IG L G L GHEV+
Sbjct: 23 MKIAVIGQSLFGQEVYCHLRKEGHEVV 49
>pdb|3ODG|A Chain A, Crystal Structure Of Xanthosine Phosphorylase Bound With
Xanthine From Yersinia Pseudotuberculosis
Length = 287
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 23/94 (24%)
Query: 7 LPATSVTGVKWSRVQVKGPRFH---------VRASLDTNVSDMSVNAPKGLFLPEPEHYR 57
+P T + G R GPRF +RA + + + +G+F+ Y
Sbjct: 148 MPGTPLVGPNDDRF---GPRFFSLANAYDKDLRADMAKIAQQLDIPLTEGVFV----SYP 200
Query: 58 GPKLK-------VAIIGAGLAGMSTAVELLDHGH 84
GP + + IIG + GMS E+L H
Sbjct: 201 GPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAH 234
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+ + IIG+G G+ T L D GH+V +
Sbjct: 9 MNLTIIGSGYVGLVTGACLADIGHDVFCL 37
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHG 83
+K +IGAG+ G+S AV L G
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSG 46
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+VA++GAG G+ A G EV+LI
Sbjct: 196 RVAVVGAGYIGVELAEAFQRKGKEVVLI 223
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLL 88
KVAIIG G AG + L GH+V +
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTI 51
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+VA++GAG G+ A G EV+LI
Sbjct: 196 RVAVVGAGYIGVELAEAFQRKGKEVVLI 223
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+ +IGAG+ G++ A L GHEVL+
Sbjct: 4 DIDCIVIGAGVVGLAIARALAAGGHEVLV 32
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 52 EPEHYRGPKLKVAIIGAGLAGMSTAVELL--DHGHEVLLI 89
EP Y K+ ++G G GM+ A+ +L D EV L+
Sbjct: 17 EPRSYN----KITVVGVGAVGMACAISILMKDLADEVALV 52
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 52 EPEHYRGPKLKVAIIGAGLAGMSTAVELL--DHGHEVLLI 89
EP Y K+ ++G G GM+ A+ +L D EV L+
Sbjct: 16 EPRSYN----KITVVGVGAVGMACAISILMKDLADEVALV 51
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+++A IG G G+ + D GHEV+ +
Sbjct: 9 VRIAXIGTGYVGLVSGACFSDFGHEVVCV 37
>pdb|1C3X|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1QE5|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
Length = 266
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 45 PKGLF--LPEPEHYRGP-KLKVA-IIGAGLAGMSTAVELLDHGH 84
P+G++ P P HY P ++++A I+GA L GMST +E + H
Sbjct: 175 PEGVYAQFPGP-HYETPAEVRMAGILGADLVGMSTTLEAIAARH 217
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+ + IIG+G G+ T L D GH+V +
Sbjct: 9 MNLTIIGSGKVGLVTGACLADIGHDVFCL 37
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+ + IIG+G G+ T L D GH+V +
Sbjct: 9 MNLTIIGSGSVGLVTGACLADIGHDVFCL 37
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad And Uric Acid
Length = 407
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 62 KVAIIGAGLAGMSTAVELLDHG 83
K +IGAG+ G+S AV L G
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSG 46
>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
Epimerase From Corynebacterium Glutamicum. Northeast
Structural Genomics Consortium Target Cgr91
Length = 516
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 56 YRGPKLKVAIIGA-GLAGMSTAVELLDHGHEVL 87
+ G L VAI G+ GL G + +L GHEV+
Sbjct: 143 FDGSPLTVAITGSRGLVGRALTAQLQTGGHEVI 175
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 62 KVAIIGAGLAGMSTAVELL 80
K+AIIGAG +G+ TA LL
Sbjct: 8 KIAIIGAGPSGLVTAKALL 26
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 25.4 bits (54), Expect = 9.7, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 62 KVAIIGAGLAGMSTAVELL 80
K+AIIGAG +G+ TA LL
Sbjct: 10 KIAIIGAGPSGLVTAKALL 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,642,233
Number of Sequences: 62578
Number of extensions: 90272
Number of successful extensions: 655
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 154
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)