BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046976
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic
OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1
Length = 574
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 69/90 (76%), Gaps = 4/90 (4%)
Query: 1 MGSSLLLPATSVTGVKWSRVQ----VKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHY 56
M SS L +S GV +V+ ++ F +R++LDT VSDMSVNAPKGLF PEPEHY
Sbjct: 1 MASSTCLIHSSSFGVGGKKVKMNTMIRSKLFSIRSALDTKVSDMSVNAPKGLFPPEPEHY 60
Query: 57 RGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
RGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 61 RGPKLKVAIIGAGLAGMSTAVELLDQGHEV 90
>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3
Length = 558
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 66/86 (76%), Gaps = 4/86 (4%)
Query: 1 MGSSLLLPATSVTGVKWSRVQVKGPRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPK 60
M SS++ AT V +K RF+V +SLD++VSDMSVNAPKGLF PEP Y+GPK
Sbjct: 1 MASSVVFAATGSLSVP----PLKSRRFYVNSSLDSDVSDMSVNAPKGLFPPEPVPYKGPK 56
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
LKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 57 LKVAIIGAGLAGMSTAVELLDQGHEV 82
>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes
erecta PE=2 SV=1
Length = 587
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 59/99 (59%), Positives = 66/99 (66%), Gaps = 19/99 (19%)
Query: 5 LLLPATSVTGVKWS-----------------RVQVKGPRFHVRASLDTNVSDMSVNAPKG 47
L PATS G + S R++V+ + VR+ LD +VSDM NAPKG
Sbjct: 12 LCFPATSAAGARTSFRTTDTFLRYRRSRQLTRLKVR--KAVVRSDLDRDVSDMRTNAPKG 69
Query: 48 LFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
LF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 70 LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEV 108
>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=ZDS PE=2 SV=1
Length = 588
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/58 (87%), Positives = 53/58 (91%)
Query: 29 VRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEV 86
+RA LD+ VSDMS NAPKGLF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV
Sbjct: 48 IRADLDSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEV 105
>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=ZDS PE=1 SV=1
Length = 588
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 55/62 (88%)
Query: 25 PRFHVRASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGH 84
P+ +RA L++ VSDMS NAPKGLF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GH
Sbjct: 44 PKSVIRADLNSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGH 103
Query: 85 EV 86
EV
Sbjct: 104 EV 105
>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays
GN=ZDS1 PE=2 SV=1
Length = 570
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/41 (92%), Positives = 38/41 (92%)
Query: 48 LFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
LF PEPEHYRGPKLKVAIIGAGLAGMSTAVELLD GHEV L
Sbjct: 52 LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDL 92
>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=crtQ PE=3 SV=1
Length = 489
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
++VAI+GAGLAGM+TAVEL+D GHEV L
Sbjct: 1 MRVAIVGAGLAGMATAVELVDAGHEVEL 28
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 1 MGSSLLLPATSVTGVKWSRVQVKGPRFHV-----RASLDTNVSDMSVNAPKGLFLPEPEH 55
MG S +P + + R GP V R L+ V+ + + F P
Sbjct: 30 MGHSFRVPTSQALKTRTRRRSTAGPLQVVCVDIPRPELENTVNFLEAASLSASFRSAPRP 89
Query: 56 YRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+ LKV I GAGLAG+STA L D GH+ LL+
Sbjct: 90 AK--PLKVVIAGAGLAGLSTAKYLADAGHKPLLL 121
>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=crtQ PE=3 SV=2
Length = 479
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEV 86
++VAI+GAGLAG++TA++L D G EV
Sbjct: 1 MRVAIVGAGLAGLATAIDLADAGCEV 26
>sp|Q99042|OXDA_TRIVR D-amino-acid oxidase OS=Trigonopsis variabilis GN=DAO1 PE=3 SV=1
Length = 356
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 24/28 (85%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K+ +IGAG+AG++TA++LL GHEV ++
Sbjct: 3 KIVVIGAGVAGLTTALQLLRKGHEVTIV 30
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 51 PEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
P PE L+V ++GAGLAG+STA L D GH+ +L+
Sbjct: 92 PRPEK----GLEVVVVGAGLAGLSTAKYLADAGHKPILL 126
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
L+V I GAGLAG+STA L D GH+ +L+
Sbjct: 105 LQVVIAGAGLAGLSTAKYLADAGHKPILL 133
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
L+V I GAGLAG+STA L D GH+ +L+
Sbjct: 105 LQVVIAGAGLAGLSTAKYLADAGHKPILL 133
>sp|B2HYP8|MNMC_ACIBC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter baumannii (strain ACICU)
GN=mnmC PE=3 SV=1
Length = 623
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 48 LFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
L P + ++ + ++A+IGAG+AG+STA GH+V L
Sbjct: 252 LLEPVRDTFQFTQQRIAVIGAGIAGLSTAWAFAQRGHQVTL 292
>sp|Q981X2|DADA3_RHILO D-amino acid dehydrogenase 3 small subunit OS=Rhizobium loti
(strain MAFF303099) GN=dadA3 PE=3 SV=1
Length = 412
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
K+ +IGAG+AG+STA LL+ G++V ++
Sbjct: 3 KIVVIGAGIAGVSTAYALLEQGYDVTVV 30
>sp|A6VMR0|MNMC_ACTSZ tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Actinobacillus succinogenes (strain ATCC
55618 / 130Z) GN=mnmC PE=3 SV=1
Length = 678
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 42 VNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
VN P FLP+ + G VAIIG G+A + +A+ LL+ G +V L
Sbjct: 256 VNTP--WFLPQAAKFDGAA-DVAIIGGGIASLFSALSLLERGADVTL 299
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
L+V + GAGLAG+STA L D GH+ +L+
Sbjct: 97 LQVVVAGAGLAGLSTAKYLADAGHKPILL 125
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
L + I GAGLAG+STA L D GH+ +L+
Sbjct: 99 LNIVIAGAGLAGLSTAKYLADAGHKPILL 127
>sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MW2)
GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
MSSA476) GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q6GDN7|CRTN_STAAR Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
MRSA252) GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcus aureus (strain N315)
GN=crtN PE=1 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
Newman) GN=crtN PE=1 SV=2
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q5HCY9|CRTN_STAAC Dehydrosqualene desaturase OS=Staphylococcus aureus (strain COL)
GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain NCTC
8325) GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|Q2FDU6|CRTN_STAA3 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
USA300) GN=crtN PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+K+A+IGAG+ G++ A + GHEV +
Sbjct: 1 MKIAVIGAGVTGLAAAARIASQGHEVTI 28
>sp|A9M3T2|DADA_NEIM0 D-amino acid dehydrogenase small subunit OS=Neisseria
meningitidis serogroup C (strain 053442) GN=dadA PE=3
SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+KV ++GAG+AG+S+A L + GHEV +I
Sbjct: 1 MKVLVLGAGVAGVSSAWYLAEAGHEVTVI 29
>sp|Q9K1H5|DADA_NEIMB D-amino acid dehydrogenase small subunit OS=Neisseria
meningitidis serogroup B (strain MC58) GN=dadA PE=3
SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+KV ++GAG+AG+S+A L + GHEV +I
Sbjct: 1 MKVLVLGAGVAGVSSAWYLAEAGHEVTVI 29
>sp|A1KRK7|DADA_NEIMF D-amino acid dehydrogenase small subunit OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=dadA PE=3 SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+KV ++GAG+AG+S+A L + GHEV +I
Sbjct: 1 MKVLVLGAGVAGVSSAWYLAEAGHEVTVI 29
>sp|Q9JX24|DADA_NEIMA D-amino acid dehydrogenase small subunit OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=dadA PE=3 SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+KV ++GAG+AG+S+A L + GHEV +I
Sbjct: 1 MKVLVLGAGVAGVSSAWYLAEAGHEVTVI 29
>sp|A0R4H4|Y5835_MYCS2 KsdD-like steroid dehydrogenase MSMEG_5835 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_5835
PE=1 SV=1
Length = 547
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89
V ++GAGLAG+ A EL++ GH V+++
Sbjct: 5 DVIVVGAGLAGLVAACELVERGHSVIIV 32
>sp|P0A3V3|TR2M_RHIRD Tryptophan 2-monooxygenase OS=Rhizobium radiobacter GN=tms1 PE=3
SV=1
Length = 755
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 49 FLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHG 83
F PE PK KVA+IGAG++G+ A ELL G
Sbjct: 229 FFPEDV----PKPKVAVIGAGISGLVVANELLHAG 259
>sp|P0A3V2|TR2M_AGRT4 Tryptophan 2-monooxygenase OS=Agrobacterium tumefaciens (strain
Ach5) GN=tms1 PE=3 SV=1
Length = 755
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 49 FLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHG 83
F PE PK KVA+IGAG++G+ A ELL G
Sbjct: 229 FFPEDV----PKPKVAVIGAGISGLVVANELLHAG 259
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 30 RASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
R LD V+ + F P + L++ I GAGL G+STA L D GH+ +L+
Sbjct: 83 RPELDNTVNYLEAAFLSSTFRASPRPTK--PLEIVIAGAGLGGLSTAKYLADAGHKPILL 140
>sp|A3M8T4|MNMC_ACIBT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755) GN=mnmC PE=3 SV=2
Length = 623
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLL 88
+A+IGAG+AG+STA GH+V L
Sbjct: 267 IAVIGAGIAGLSTAWAFAQRGHQVTL 292
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
L++ I GAGL G+STA L D GH+ +L+
Sbjct: 111 LEIVIAGAGLGGLSTAKYLADAGHKPILL 139
>sp|A6MFL0|OXLA_DEMVE L-amino-acid oxidase OS=Demansia vestigiata PE=2 SV=1
Length = 517
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PK +V ++GAG+AG+S A L GH V+L+
Sbjct: 52 PK-RVVVVGAGMAGLSAAYVLAGAGHNVMLL 81
>sp|Q53552|NHG2_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=4 SV=1
Length = 435
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 57 RGPKLKVAIIGAGLAGMSTAVELLDHGH 84
+ P L+VAI+G G++G++ A+ L H H
Sbjct: 7 KKPALRVAIVGGGISGLALALSLCKHSH 34
>sp|P25017|TR2M2_AGRVI Tryptophan 2-monooxygenase OS=Agrobacterium vitis GN=iaaM PE=3 SV=1
Length = 755
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 49 FLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHG 83
F PE P+ KVA+IGAG++G+ A ELL G
Sbjct: 229 FFPEDV----PRPKVAVIGAGISGLVVASELLHAG 259
>sp|Q8XX54|DADA2_RALSO D-amino acid dehydrogenase 2 small subunit OS=Ralstonia
solanacearum (strain GMI1000) GN=dadA2 PE=3 SV=1
Length = 425
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+++ ++GAG+ G+STA L GH+V L+
Sbjct: 1 MQITVVGAGIVGISTAYALAQEGHQVTLV 29
>sp|Q4JHE1|OXLA_PSEAU L-amino-acid oxidase OS=Pseudechis australis PE=1 SV=1
Length = 517
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
PK +V ++GAG+AG+S A L GH+V L+
Sbjct: 52 PK-RVVVVGAGMAGLSAAYVLAGAGHQVTLL 81
>sp|Q6MHW5|TRMFO_BDEBA Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Bdellovibrio bacteriovorus (strain ATCC 15356
/ DSM 50701 / NCIB 9529 / HD100) GN=trmFO PE=3 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 62 KVAIIGAGLAGMSTAVELLDHGHEVLL 88
K+ ++GAGLAG A++L D G+ V+L
Sbjct: 9 KITVVGAGLAGSECALQLADMGYSVVL 35
>sp|Q2LT41|TRMFO_SYNAS Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Syntrophus aciditrophicus (strain SB) GN=trmFO
PE=3 SV=1
Length = 441
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLL 88
+AIIG GLAG A +LL+ GH V L
Sbjct: 7 IAIIGGGLAGCEAAWQLLNKGHSVTL 32
>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC
7942) GN=pds PE=1 SV=1
Length = 474
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGH 84
++VAI GAGLAG+S A L D GH
Sbjct: 1 MRVAIAGAGLAGLSCAKYLADAGH 24
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
Length = 2111
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 46 KGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLL 88
+G +P P R + +VAIIG+G AG++ A +L GH V++
Sbjct: 1742 EGWIVPRPPAERTGR-RVAIIGSGPAGLAAADQLNRAGHHVVI 1783
>sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis
thaliana GN=FMOGS-OX1 PE=2 SV=1
Length = 459
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 63 VAIIGAGLAGMSTAVELLDHGHEVLL 88
VA+IGAG AG+ TA EL GH V++
Sbjct: 13 VAVIGAGAAGLVTARELRREGHTVVV 38
>sp|B4RR07|DADA_NEIG2 D-amino acid dehydrogenase small subunit OS=Neisseria gonorrhoeae
(strain NCCP11945) GN=dadA PE=3 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+KV ++GAG+AG+S+ L + GHEV +I
Sbjct: 1 MKVLVLGAGVAGVSSVWYLAEAGHEVTVI 29
>sp|Q5F5W1|DADA_NEIG1 D-amino acid dehydrogenase small subunit OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=dadA PE=3 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89
+KV ++GAG+AG+S+ L + GHEV +I
Sbjct: 1 MKVLVLGAGVAGVSSVWYLAEAGHEVTVI 29
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,081,022
Number of Sequences: 539616
Number of extensions: 1192241
Number of successful extensions: 6331
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6042
Number of HSP's gapped (non-prelim): 309
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)