Query 046976
Match_columns 89
No_of_seqs 159 out of 2239
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12831 putative oxidoreducta 99.7 7.9E-18 1.7E-22 129.8 6.4 80 6-89 79-169 (464)
2 TIGR03315 Se_ygfK putative sel 99.7 7E-18 1.5E-22 140.2 6.3 81 6-89 476-566 (1012)
3 PRK12810 gltD glutamate syntha 99.7 2.1E-17 4.5E-22 127.2 5.9 81 6-89 83-172 (471)
4 PRK09853 putative selenate red 99.7 3.6E-17 7.9E-22 135.9 6.1 82 6-89 478-568 (1019)
5 PRK12779 putative bifunctional 99.7 5.4E-17 1.2E-21 134.3 6.0 84 6-89 239-335 (944)
6 PRK12775 putative trifunctiona 99.7 8.4E-17 1.8E-21 133.7 6.0 79 6-89 370-459 (1006)
7 PRK12769 putative oxidoreducta 99.7 1.2E-16 2.6E-21 127.3 6.4 81 6-89 265-356 (654)
8 TIGR01318 gltD_gamma_fam gluta 99.7 1.6E-16 3.5E-21 122.5 6.2 81 6-89 79-170 (467)
9 PRK12814 putative NADPH-depend 99.7 2.3E-16 5.1E-21 125.9 6.9 81 6-89 133-222 (652)
10 PRK12809 putative oxidoreducta 99.6 3.2E-16 7E-21 124.7 6.6 81 6-89 248-339 (639)
11 TIGR01317 GOGAT_sm_gam glutama 99.6 3.3E-16 7.2E-21 121.3 6.1 81 6-89 83-172 (485)
12 PRK12771 putative glutamate sy 99.6 4.9E-16 1.1E-20 121.8 6.2 80 6-89 78-166 (564)
13 PRK06567 putative bifunctional 99.6 3.7E-16 7.9E-21 129.7 5.4 82 7-89 310-412 (1028)
14 TIGR01316 gltA glutamate synth 99.6 8.1E-16 1.8E-20 117.9 6.6 81 5-89 66-162 (449)
15 PRK11749 dihydropyrimidine deh 99.6 1.1E-15 2.4E-20 117.0 6.1 80 6-89 79-169 (457)
16 PRK13984 putative oxidoreducta 99.6 3.9E-15 8.5E-20 117.3 6.6 81 7-89 223-312 (604)
17 PRK12778 putative bifunctional 99.6 1.2E-15 2.6E-20 123.2 3.6 81 6-89 368-460 (752)
18 COG0493 GltD NADPH-dependent g 99.5 2.7E-14 5.9E-19 110.9 5.7 79 8-89 63-152 (457)
19 KOG0399 Glutamate synthase [Am 99.4 1.1E-13 2.4E-18 116.2 4.8 80 7-89 1726-1814(2142)
20 PLN02487 zeta-carotene desatur 98.8 1.3E-08 2.8E-13 81.1 6.1 59 31-89 46-104 (569)
21 PF01494 FAD_binding_3: FAD bi 98.6 4.2E-08 9.2E-13 70.3 4.1 29 61-89 2-30 (356)
22 COG1635 THI4 Ribulose 1,5-bisp 98.6 5.4E-08 1.2E-12 70.6 3.5 29 61-89 31-59 (262)
23 PRK07364 2-octaprenyl-6-methox 98.5 1.5E-07 3.3E-12 70.4 5.6 30 60-89 18-47 (415)
24 PF13450 NAD_binding_8: NAD(P) 98.5 1.5E-07 3.2E-12 55.8 3.6 25 65-89 1-25 (68)
25 PF01946 Thi4: Thi4 family; PD 98.5 9.2E-08 2E-12 68.9 3.2 29 61-89 18-46 (230)
26 COG0644 FixC Dehydrogenases (f 98.5 1.3E-07 2.8E-12 71.4 4.1 30 60-89 3-32 (396)
27 PLN00093 geranylgeranyl diphos 98.5 3.2E-07 7E-12 71.0 5.5 30 60-89 39-68 (450)
28 PRK10157 putative oxidoreducta 98.4 2.5E-07 5.5E-12 70.7 4.4 30 60-89 5-34 (428)
29 PRK09126 hypothetical protein; 98.4 2.5E-07 5.4E-12 68.8 4.2 29 61-89 4-32 (392)
30 PRK07045 putative monooxygenas 98.4 2.7E-07 5.8E-12 68.8 4.3 30 60-89 5-34 (388)
31 PRK04176 ribulose-1,5-biphosph 98.4 2.9E-07 6.4E-12 66.6 4.3 29 61-89 26-54 (257)
32 COG1233 Phytoene dehydrogenase 98.4 2.7E-07 5.9E-12 71.8 4.2 30 60-89 3-32 (487)
33 PRK08849 2-octaprenyl-3-methyl 98.4 3.2E-07 7E-12 68.6 4.3 29 61-89 4-32 (384)
34 PRK07236 hypothetical protein; 98.4 4.2E-07 9.1E-12 67.9 4.7 30 60-89 6-35 (386)
35 PRK10015 oxidoreductase; Provi 98.4 3.4E-07 7.4E-12 70.2 4.2 30 60-89 5-34 (429)
36 PRK06847 hypothetical protein; 98.4 4.4E-07 9.6E-12 66.9 4.6 29 61-89 5-33 (375)
37 PRK10262 thioredoxin reductase 98.4 5.2E-07 1.1E-11 65.9 4.8 30 60-89 6-35 (321)
38 PRK05714 2-octaprenyl-3-methyl 98.4 3.6E-07 7.8E-12 68.5 4.0 29 61-89 3-31 (405)
39 PRK08773 2-octaprenyl-3-methyl 98.4 3.8E-07 8.3E-12 68.1 4.1 30 60-89 6-35 (392)
40 TIGR00292 thiazole biosynthesi 98.4 4.8E-07 1E-11 65.5 4.4 29 61-89 22-50 (254)
41 COG0654 UbiH 2-polyprenyl-6-me 98.4 4.7E-07 1E-11 68.1 4.4 29 61-89 3-31 (387)
42 PRK07608 ubiquinone biosynthes 98.4 4.2E-07 9.2E-12 67.3 4.1 30 60-89 5-34 (388)
43 PRK08013 oxidoreductase; Provi 98.4 4.3E-07 9.3E-12 68.3 4.2 29 61-89 4-32 (400)
44 PRK05732 2-octaprenyl-6-methox 98.4 4.3E-07 9.2E-12 67.3 4.1 30 60-89 3-35 (395)
45 TIGR02360 pbenz_hydroxyl 4-hyd 98.4 5E-07 1.1E-11 68.0 4.5 29 61-89 3-31 (390)
46 PRK08163 salicylate hydroxylas 98.4 5.1E-07 1.1E-11 67.2 4.5 29 61-89 5-33 (396)
47 PRK08020 ubiF 2-octaprenyl-3-m 98.4 4.2E-07 9.2E-12 67.6 3.9 30 60-89 5-34 (391)
48 KOG0029 Amine oxidase [Seconda 98.4 5.5E-07 1.2E-11 71.0 4.7 31 59-89 14-44 (501)
49 COG0492 TrxB Thioredoxin reduc 98.3 5.5E-07 1.2E-11 67.0 4.3 29 60-88 3-32 (305)
50 PRK06475 salicylate hydroxylas 98.3 5.9E-07 1.3E-11 67.5 4.4 29 61-89 3-31 (400)
51 PLN02985 squalene monooxygenas 98.3 7.7E-07 1.7E-11 70.0 5.1 30 60-89 43-72 (514)
52 PRK08243 4-hydroxybenzoate 3-m 98.3 6.5E-07 1.4E-11 67.1 4.5 29 61-89 3-31 (392)
53 PRK07208 hypothetical protein; 98.3 6.6E-07 1.4E-11 68.5 4.5 30 60-89 4-33 (479)
54 PRK07494 2-octaprenyl-6-methox 98.3 5.8E-07 1.2E-11 66.8 4.1 30 60-89 7-36 (388)
55 PLN02852 ferredoxin-NADP+ redu 98.3 8.2E-07 1.8E-11 69.9 5.1 30 60-89 26-57 (491)
56 TIGR01421 gluta_reduc_1 glutat 98.3 7.4E-07 1.6E-11 68.6 4.5 30 60-89 2-31 (450)
57 PRK08850 2-octaprenyl-6-methox 98.3 6.4E-07 1.4E-11 67.3 4.0 29 61-89 5-33 (405)
58 PRK06617 2-octaprenyl-6-methox 98.3 6.7E-07 1.5E-11 66.7 4.1 29 61-89 2-30 (374)
59 PRK08244 hypothetical protein; 98.3 7.6E-07 1.7E-11 68.7 4.4 29 61-89 3-31 (493)
60 TIGR01424 gluta_reduc_2 glutat 98.3 7.5E-07 1.6E-11 68.2 4.3 30 60-89 2-31 (446)
61 PRK06184 hypothetical protein; 98.3 8.3E-07 1.8E-11 68.7 4.6 29 61-89 4-32 (502)
62 TIGR02733 desat_CrtD C-3',4' d 98.3 8.5E-07 1.8E-11 68.3 4.5 29 61-89 2-30 (492)
63 PRK07251 pyridine nucleotide-d 98.3 8.7E-07 1.9E-11 67.5 4.4 30 60-89 3-32 (438)
64 PRK08010 pyridine nucleotide-d 98.3 8.9E-07 1.9E-11 67.5 4.4 30 60-89 3-32 (441)
65 PRK06116 glutathione reductase 98.3 8.6E-07 1.9E-11 67.7 4.3 30 60-89 4-33 (450)
66 PRK06185 hypothetical protein; 98.3 9.1E-07 2E-11 66.1 4.3 30 60-89 6-35 (407)
67 TIGR03143 AhpF_homolog putativ 98.3 8.6E-07 1.9E-11 70.0 4.3 30 60-89 4-33 (555)
68 PRK06126 hypothetical protein; 98.3 9.1E-07 2E-11 69.1 4.4 30 60-89 7-36 (545)
69 PRK05868 hypothetical protein; 98.3 1E-06 2.3E-11 66.0 4.5 29 61-89 2-30 (372)
70 PLN02172 flavin-containing mon 98.3 1E-06 2.2E-11 68.6 4.4 30 60-89 10-39 (461)
71 TIGR03140 AhpF alkyl hydropero 98.3 1.1E-06 2.3E-11 68.8 4.5 30 60-89 212-241 (515)
72 COG0665 DadA Glycine/D-amino a 98.3 1.2E-06 2.7E-11 64.5 4.4 30 60-89 4-33 (387)
73 PRK15317 alkyl hydroperoxide r 98.3 1.4E-06 3.1E-11 68.0 4.9 30 60-89 211-240 (517)
74 TIGR00562 proto_IX_ox protopor 98.2 1.3E-06 2.7E-11 66.4 4.4 29 61-89 3-35 (462)
75 PLN02576 protoporphyrinogen ox 98.2 1.3E-06 2.8E-11 67.1 4.4 30 60-89 12-42 (496)
76 PRK06115 dihydrolipoamide dehy 98.2 1.3E-06 2.9E-11 67.3 4.4 29 61-89 4-32 (466)
77 PRK07333 2-octaprenyl-6-methox 98.2 1.1E-06 2.3E-11 65.5 3.7 29 61-89 2-32 (403)
78 PLN02463 lycopene beta cyclase 98.2 2.1E-06 4.6E-11 66.7 5.3 30 60-89 28-57 (447)
79 COG2081 Predicted flavoprotein 98.2 1.5E-06 3.1E-11 67.2 4.3 30 60-89 3-32 (408)
80 PRK11259 solA N-methyltryptoph 98.2 1.5E-06 3.2E-11 64.0 4.2 29 61-89 4-32 (376)
81 PRK05249 soluble pyridine nucl 98.2 1.5E-06 3.2E-11 66.4 4.3 30 60-89 5-34 (461)
82 PRK06370 mercuric reductase; V 98.2 1.5E-06 3.3E-11 66.6 4.3 30 60-89 5-34 (463)
83 PRK06416 dihydrolipoamide dehy 98.2 1.6E-06 3.4E-11 66.4 4.4 30 60-89 4-33 (462)
84 TIGR01350 lipoamide_DH dihydro 98.2 1.6E-06 3.4E-11 66.2 4.3 29 61-89 2-30 (461)
85 PRK05976 dihydrolipoamide dehy 98.2 1.6E-06 3.5E-11 66.7 4.4 30 60-89 4-33 (472)
86 PRK12409 D-amino acid dehydrog 98.2 1.7E-06 3.8E-11 64.9 4.4 29 61-89 2-30 (410)
87 PRK05335 tRNA (uracil-5-)-meth 98.2 2E-06 4.3E-11 67.0 4.3 29 61-89 3-31 (436)
88 PLN02697 lycopene epsilon cycl 98.2 3.7E-06 8E-11 66.7 5.9 30 60-89 108-137 (529)
89 PRK07818 dihydrolipoamide dehy 98.2 2.1E-06 4.6E-11 66.0 4.3 30 60-89 4-33 (466)
90 PRK08132 FAD-dependent oxidore 98.2 2.2E-06 4.9E-11 67.0 4.3 30 60-89 23-52 (547)
91 PRK06834 hypothetical protein; 98.1 2.9E-06 6.2E-11 66.2 4.5 29 61-89 4-32 (488)
92 PRK14694 putative mercuric red 98.1 2.9E-06 6.3E-11 65.4 4.4 30 60-89 6-35 (468)
93 PRK07190 hypothetical protein; 98.1 3.1E-06 6.8E-11 66.0 4.6 30 60-89 5-34 (487)
94 PRK06183 mhpA 3-(3-hydroxyphen 98.1 3.3E-06 7.1E-11 66.1 4.5 30 60-89 10-39 (538)
95 TIGR03329 Phn_aa_oxid putative 98.1 5.5E-06 1.2E-10 63.7 5.6 30 60-89 24-55 (460)
96 PRK06292 dihydrolipoamide dehy 98.1 3.1E-06 6.7E-11 64.7 4.2 29 61-89 4-32 (460)
97 PTZ00052 thioredoxin reductase 98.1 3.2E-06 7E-11 66.0 4.2 29 61-89 6-34 (499)
98 PTZ00188 adrenodoxin reductase 98.1 6E-06 1.3E-10 65.4 5.5 30 60-89 39-69 (506)
99 PRK08294 phenol 2-monooxygenas 98.1 6.4E-06 1.4E-10 66.3 5.7 30 60-89 32-62 (634)
100 PLN02927 antheraxanthin epoxid 98.1 3.7E-06 8E-11 68.4 4.4 30 60-89 81-110 (668)
101 PRK11728 hydroxyglutarate oxid 98.1 3.7E-06 8E-11 63.1 4.0 29 61-89 3-33 (393)
102 PRK06467 dihydrolipoamide dehy 98.1 4.8E-06 1E-10 64.4 4.5 30 60-89 4-33 (471)
103 PRK05192 tRNA uridine 5-carbox 98.1 4.4E-06 9.6E-11 67.5 4.4 30 60-89 4-33 (618)
104 PTZ00367 squalene epoxidase; P 98.1 5.3E-06 1.1E-10 66.2 4.8 30 60-89 33-62 (567)
105 PRK13748 putative mercuric red 98.1 4.7E-06 1E-10 65.2 4.3 30 60-89 98-127 (561)
106 TIGR01372 soxA sarcosine oxida 98.1 5.5E-06 1.2E-10 69.5 4.9 30 60-89 163-192 (985)
107 PRK01747 mnmC bifunctional tRN 98.1 4.7E-06 1E-10 66.9 4.2 29 61-89 261-289 (662)
108 PRK12416 protoporphyrinogen ox 98.1 4.8E-06 1E-10 63.6 4.1 29 61-89 2-36 (463)
109 KOG1399 Flavin-containing mono 98.1 4.5E-06 9.8E-11 65.2 4.0 30 60-89 6-35 (448)
110 PLN02529 lysine-specific histo 98.0 7.6E-06 1.6E-10 67.2 5.3 30 60-89 160-189 (738)
111 PRK08274 tricarballylate dehyd 98.0 5.5E-06 1.2E-10 63.5 4.3 29 61-89 5-33 (466)
112 TIGR01373 soxB sarcosine oxida 98.0 1.3E-05 2.7E-10 60.2 5.8 30 60-89 30-61 (407)
113 COG3380 Predicted NAD/FAD-depe 98.0 5.9E-06 1.3E-10 61.8 3.9 28 62-89 3-30 (331)
114 PRK08401 L-aspartate oxidase; 98.0 6.9E-06 1.5E-10 63.5 4.3 29 61-89 2-30 (466)
115 PRK07121 hypothetical protein; 98.0 1.2E-05 2.7E-10 62.3 5.6 30 60-89 20-49 (492)
116 PRK06327 dihydrolipoamide dehy 98.0 7.4E-06 1.6E-10 63.3 4.3 30 60-89 4-33 (475)
117 KOG2614 Kynurenine 3-monooxyge 98.0 9E-06 2E-10 63.0 4.3 29 61-89 3-31 (420)
118 PF00743 FMO-like: Flavin-bind 98.0 8.2E-06 1.8E-10 64.7 4.0 29 61-89 2-30 (531)
119 PF00070 Pyr_redox: Pyridine n 98.0 1.5E-05 3.3E-10 47.6 4.4 28 62-89 1-28 (80)
120 PLN02507 glutathione reductase 98.0 1E-05 2.2E-10 63.3 4.3 30 60-89 25-54 (499)
121 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.1E-05 2.3E-10 61.8 4.2 29 61-89 2-30 (377)
122 PRK12770 putative glutamate sy 97.9 1.8E-05 3.8E-10 58.8 5.2 30 60-89 18-47 (352)
123 PRK13369 glycerol-3-phosphate 97.9 1.2E-05 2.6E-10 62.7 4.4 30 60-89 6-35 (502)
124 PRK06996 hypothetical protein; 97.9 1.1E-05 2.3E-10 60.8 4.0 30 60-89 11-44 (398)
125 PRK12266 glpD glycerol-3-phosp 97.9 1.2E-05 2.6E-10 62.9 4.4 30 60-89 6-35 (508)
126 PRK11101 glpA sn-glycerol-3-ph 97.9 1.1E-05 2.5E-10 63.6 4.2 30 60-89 6-35 (546)
127 PRK08641 sdhA succinate dehydr 97.9 1.3E-05 2.9E-10 63.9 4.4 30 60-89 3-32 (589)
128 PLN02612 phytoene desaturase 97.9 2.4E-05 5.2E-10 62.2 5.8 30 60-89 93-122 (567)
129 PRK06481 fumarate reductase fl 97.9 1.4E-05 3.1E-10 62.4 4.4 30 60-89 61-90 (506)
130 PRK07573 sdhA succinate dehydr 97.9 2.6E-05 5.5E-10 62.9 5.8 30 60-89 35-64 (640)
131 PRK13977 myosin-cross-reactive 97.9 2.5E-05 5.3E-10 62.8 5.5 30 60-89 22-55 (576)
132 PLN02328 lysine-specific histo 97.9 2.2E-05 4.7E-10 65.2 5.2 30 60-89 238-267 (808)
133 PTZ00058 glutathione reductase 97.9 2.4E-05 5.3E-10 62.4 5.3 30 60-89 48-77 (561)
134 PLN02661 Putative thiazole syn 97.9 1.6E-05 3.5E-10 60.7 3.9 30 60-89 92-122 (357)
135 PRK12842 putative succinate de 97.9 1.8E-05 3.8E-10 62.8 4.3 30 60-89 9-38 (574)
136 PLN02546 glutathione reductase 97.9 1.8E-05 3.8E-10 63.1 4.3 30 60-89 79-108 (558)
137 PRK07803 sdhA succinate dehydr 97.8 2.1E-05 4.6E-10 63.2 4.2 29 61-89 9-37 (626)
138 PRK07804 L-aspartate oxidase; 97.8 2.1E-05 4.6E-10 62.1 4.2 30 60-89 16-45 (541)
139 TIGR01438 TGR thioredoxin and 97.8 2.3E-05 4.9E-10 61.1 4.3 29 61-89 3-31 (484)
140 PRK12834 putative FAD-binding 97.8 2.3E-05 4.9E-10 61.8 4.2 30 60-89 4-33 (549)
141 PRK07057 sdhA succinate dehydr 97.8 2.3E-05 5E-10 62.5 4.2 29 61-89 13-41 (591)
142 PRK12837 3-ketosteroid-delta-1 97.8 2.3E-05 5.1E-10 61.3 4.1 29 60-89 7-35 (513)
143 PLN02568 polyamine oxidase 97.8 2.7E-05 5.8E-10 61.8 4.4 29 61-89 6-39 (539)
144 PRK09078 sdhA succinate dehydr 97.8 2.5E-05 5.5E-10 62.4 4.2 30 60-89 12-41 (598)
145 PLN02464 glycerol-3-phosphate 97.8 2.9E-05 6.3E-10 62.5 4.3 30 60-89 71-100 (627)
146 PRK06452 sdhA succinate dehydr 97.8 3E-05 6.6E-10 61.5 4.3 29 61-89 6-34 (566)
147 PRK05329 anaerobic glycerol-3- 97.8 3.4E-05 7.3E-10 59.8 4.4 29 61-89 3-31 (422)
148 COG1231 Monoamine oxidase [Ami 97.8 3E-05 6.6E-10 60.6 4.0 30 60-89 7-36 (450)
149 PRK08958 sdhA succinate dehydr 97.8 3.1E-05 6.7E-10 61.8 4.2 29 61-89 8-36 (588)
150 PTZ00139 Succinate dehydrogena 97.8 3.1E-05 6.7E-10 62.2 4.1 30 60-89 29-58 (617)
151 PLN00128 Succinate dehydrogena 97.8 3.1E-05 6.7E-10 62.5 4.2 30 60-89 50-79 (635)
152 PRK14727 putative mercuric red 97.8 3.5E-05 7.6E-10 59.7 4.3 30 60-89 16-45 (479)
153 PRK08626 fumarate reductase fl 97.8 3.2E-05 7E-10 62.6 4.2 30 60-89 5-34 (657)
154 COG1148 HdrA Heterodisulfide r 97.7 3.4E-05 7.3E-10 61.5 4.1 30 60-89 124-153 (622)
155 TIGR01423 trypano_reduc trypan 97.7 3.7E-05 8E-10 60.1 4.2 30 60-89 3-33 (486)
156 PLN02676 polyamine oxidase 97.7 4.1E-05 8.9E-10 59.8 4.4 30 60-89 26-56 (487)
157 COG2072 TrkA Predicted flavopr 97.7 4.3E-05 9.3E-10 59.2 4.4 30 60-89 8-38 (443)
158 PRK12835 3-ketosteroid-delta-1 97.7 4E-05 8.7E-10 61.1 4.3 30 60-89 11-40 (584)
159 PRK06854 adenylylsulfate reduc 97.7 3.6E-05 7.8E-10 61.7 4.0 29 61-89 12-42 (608)
160 PRK06069 sdhA succinate dehydr 97.7 3.9E-05 8.5E-10 60.9 4.0 29 61-89 6-37 (577)
161 PRK09754 phenylpropionate diox 97.7 5.7E-05 1.2E-09 57.0 4.3 29 61-89 4-34 (396)
162 COG2907 Predicted NAD/FAD-bind 97.7 3E-05 6.6E-10 59.8 2.8 29 60-89 8-36 (447)
163 PRK07845 flavoprotein disulfid 97.7 5.4E-05 1.2E-09 58.5 4.2 29 61-89 2-30 (466)
164 PTZ00153 lipoamide dehydrogena 97.7 5.3E-05 1.1E-09 61.6 4.3 30 60-89 116-145 (659)
165 PRK12844 3-ketosteroid-delta-1 97.7 5.7E-05 1.2E-09 59.9 4.4 30 60-89 6-35 (557)
166 PRK05945 sdhA succinate dehydr 97.6 5.4E-05 1.2E-09 60.1 4.0 29 61-89 4-34 (575)
167 TIGR00551 nadB L-aspartate oxi 97.6 6.7E-05 1.5E-09 58.3 4.2 28 61-89 3-30 (488)
168 PRK08275 putative oxidoreducta 97.6 6.1E-05 1.3E-09 59.5 3.9 30 60-89 9-40 (554)
169 PRK07843 3-ketosteroid-delta-1 97.6 7.7E-05 1.7E-09 59.1 4.4 30 60-89 7-36 (557)
170 PRK02106 choline dehydrogenase 97.6 9E-05 1.9E-09 58.4 4.4 30 60-89 5-35 (560)
171 PRK06263 sdhA succinate dehydr 97.6 7.9E-05 1.7E-09 58.7 4.0 28 61-89 8-35 (543)
172 PLN02815 L-aspartate oxidase 97.6 8E-05 1.7E-09 59.8 4.0 29 60-89 29-57 (594)
173 PF14691 Fer4_20: Dihydroprymi 97.6 7.9E-06 1.7E-10 53.0 -1.4 26 7-32 62-89 (111)
174 PRK13800 putative oxidoreducta 97.5 9.5E-05 2.1E-09 61.6 4.2 30 60-89 13-42 (897)
175 PRK05257 malate:quinone oxidor 97.5 9.4E-05 2E-09 58.1 4.0 30 60-89 5-36 (494)
176 PRK06134 putative FAD-binding 97.5 0.00017 3.8E-09 57.3 5.3 30 60-89 12-41 (581)
177 PRK08071 L-aspartate oxidase; 97.5 0.00011 2.3E-09 57.7 3.9 28 61-89 4-31 (510)
178 PRK06175 L-aspartate oxidase; 97.5 0.00011 2.3E-09 56.6 3.8 28 61-89 5-32 (433)
179 PTZ00363 rab-GDP dissociation 97.5 0.00011 2.5E-09 57.1 3.9 30 60-89 4-33 (443)
180 PLN03000 amine oxidase 97.5 0.00014 3E-09 61.0 4.5 30 60-89 184-213 (881)
181 PRK09231 fumarate reductase fl 97.5 0.00012 2.7E-09 58.3 4.1 29 61-89 5-35 (582)
182 COG3075 GlpB Anaerobic glycero 97.5 0.00014 3E-09 55.9 4.1 29 61-89 3-31 (421)
183 TIGR01176 fum_red_Fp fumarate 97.5 0.00013 2.8E-09 58.3 4.1 29 61-89 4-34 (580)
184 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00015 3.2E-09 56.8 4.2 29 60-88 4-32 (454)
185 COG3634 AhpF Alkyl hydroperoxi 97.5 0.0001 2.2E-09 57.2 3.2 28 60-87 211-238 (520)
186 PRK12843 putative FAD-binding 97.5 0.00026 5.6E-09 56.4 5.6 30 60-89 16-45 (578)
187 COG1053 SdhA Succinate dehydro 97.5 0.00015 3.3E-09 58.1 4.2 30 60-89 6-35 (562)
188 PRK12839 hypothetical protein; 97.5 0.0002 4.3E-09 57.1 4.9 30 60-89 8-37 (572)
189 PRK07395 L-aspartate oxidase; 97.5 0.00013 2.8E-09 58.0 3.7 29 60-89 9-37 (553)
190 PRK11445 putative oxidoreducta 97.4 0.00012 2.7E-09 54.3 3.2 22 61-82 2-23 (351)
191 PTZ00306 NADH-dependent fumara 97.4 0.00018 3.9E-09 61.6 4.4 30 60-89 409-438 (1167)
192 PTZ00383 malate:quinone oxidor 97.4 0.00019 4E-09 56.7 4.1 30 60-89 45-76 (497)
193 PRK08205 sdhA succinate dehydr 97.4 0.00018 4E-09 57.2 4.1 28 61-89 6-33 (583)
194 PRK13512 coenzyme A disulfide 97.4 0.00021 4.6E-09 54.7 4.2 29 61-89 2-32 (438)
195 PRK09077 L-aspartate oxidase; 97.4 0.00022 4.8E-09 56.2 4.1 29 60-89 8-36 (536)
196 KOG0685 Flavin-containing amin 97.4 0.00023 5E-09 56.2 4.0 29 61-89 22-51 (498)
197 KOG1276 Protoporphyrinogen oxi 97.4 0.00024 5.2E-09 55.8 4.1 29 60-88 11-39 (491)
198 PRK13339 malate:quinone oxidor 97.3 0.00029 6.4E-09 55.6 4.5 30 60-89 6-37 (497)
199 PRK12845 3-ketosteroid-delta-1 97.3 0.00027 5.8E-09 56.3 4.0 29 60-89 16-44 (564)
200 PTZ00318 NADH dehydrogenase-li 97.3 0.00036 7.7E-09 53.3 4.5 30 60-89 10-39 (424)
201 PLN02976 amine oxidase 97.3 0.00034 7.3E-09 61.6 4.3 30 60-89 693-722 (1713)
202 COG3573 Predicted oxidoreducta 97.2 0.00041 9E-09 53.8 3.9 30 60-89 5-34 (552)
203 KOG2820 FAD-dependent oxidored 97.2 0.00038 8.2E-09 53.5 3.5 30 60-89 7-36 (399)
204 PRK01438 murD UDP-N-acetylmura 97.2 0.00058 1.3E-08 52.7 4.6 30 60-89 16-45 (480)
205 COG0445 GidA Flavin-dependent 97.2 0.00028 6E-09 56.9 2.8 30 60-89 4-33 (621)
206 COG0446 HcaD Uncharacterized N 97.2 0.00059 1.3E-08 50.0 4.4 29 61-89 137-165 (415)
207 PRK09897 hypothetical protein; 97.1 0.00059 1.3E-08 54.4 4.3 29 61-89 2-32 (534)
208 PRK07512 L-aspartate oxidase; 97.1 0.00047 1E-08 54.2 3.4 28 60-89 9-36 (513)
209 PRK14106 murD UDP-N-acetylmura 97.1 0.00091 2E-08 51.0 4.6 30 60-89 5-34 (450)
210 KOG1298 Squalene monooxygenase 97.0 0.00064 1.4E-08 53.2 3.6 30 60-89 45-74 (509)
211 PRK04965 NADH:flavorubredoxin 97.0 0.00092 2E-08 50.0 4.2 29 61-89 3-33 (377)
212 PF13738 Pyr_redox_3: Pyridine 97.0 0.001 2.2E-08 44.9 3.8 30 60-89 167-196 (203)
213 COG0029 NadB Aspartate oxidase 97.0 0.00054 1.2E-08 54.4 2.8 27 62-89 9-35 (518)
214 COG0578 GlpA Glycerol-3-phosph 97.0 0.00093 2E-08 53.5 4.1 30 60-89 12-41 (532)
215 COG0579 Predicted dehydrogenas 97.0 0.00098 2.1E-08 52.1 4.0 30 60-89 3-34 (429)
216 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00061 1.3E-08 52.5 2.8 29 61-89 4-32 (439)
217 COG2303 BetA Choline dehydroge 96.9 0.00077 1.7E-08 53.5 3.3 30 60-89 7-36 (542)
218 COG0562 Glf UDP-galactopyranos 96.9 0.0012 2.6E-08 50.5 4.1 29 61-89 2-30 (374)
219 KOG1800 Ferredoxin/adrenodoxin 96.9 0.0014 3.1E-08 51.1 4.2 29 61-89 21-51 (468)
220 PRK09754 phenylpropionate diox 96.8 0.002 4.4E-08 48.6 4.5 29 61-89 145-173 (396)
221 PRK06719 precorrin-2 dehydroge 96.8 0.003 6.4E-08 42.8 4.6 30 60-89 13-42 (157)
222 PRK04965 NADH:flavorubredoxin 96.8 0.0023 5E-08 47.8 4.5 30 60-89 141-170 (377)
223 PRK05976 dihydrolipoamide dehy 96.8 0.0023 5E-08 49.3 4.5 29 61-89 181-209 (472)
224 PRK07251 pyridine nucleotide-d 96.7 0.0025 5.4E-08 48.6 4.5 30 60-89 157-186 (438)
225 PF13241 NAD_binding_7: Putati 96.7 0.0013 2.8E-08 41.4 2.5 30 60-89 7-36 (103)
226 TIGR01470 cysG_Nterm siroheme 96.7 0.0032 6.9E-08 44.4 4.6 30 60-89 9-38 (205)
227 KOG0404 Thioredoxin reductase 96.7 0.0019 4.2E-08 47.7 3.4 29 61-89 9-37 (322)
228 KOG2415 Electron transfer flav 96.7 0.0015 3.3E-08 51.8 2.9 24 59-82 75-98 (621)
229 PLN02785 Protein HOTHEAD 96.6 0.0022 4.8E-08 51.5 3.8 29 60-89 55-83 (587)
230 TIGR03385 CoA_CoA_reduc CoA-di 96.6 0.0036 7.9E-08 47.4 4.5 29 61-89 138-166 (427)
231 TIGR01350 lipoamide_DH dihydro 96.6 0.0035 7.6E-08 47.9 4.4 30 60-89 170-199 (461)
232 TIGR02053 MerA mercuric reduct 96.6 0.0036 7.8E-08 48.1 4.4 29 61-89 167-195 (463)
233 PRK06416 dihydrolipoamide dehy 96.5 0.0042 9.1E-08 47.6 4.5 29 61-89 173-201 (462)
234 KOG1335 Dihydrolipoamide dehyd 96.5 0.0029 6.2E-08 49.7 3.5 29 60-88 39-67 (506)
235 PRK05708 2-dehydropantoate 2-r 96.5 0.0049 1.1E-07 45.5 4.5 29 61-89 3-31 (305)
236 PRK06718 precorrin-2 dehydroge 96.5 0.0058 1.3E-07 42.9 4.7 30 60-89 10-39 (202)
237 PF01262 AlaDh_PNT_C: Alanine 96.5 0.0054 1.2E-07 41.5 4.4 30 60-89 20-49 (168)
238 PRK06370 mercuric reductase; V 96.5 0.0047 1E-07 47.5 4.5 30 60-89 171-200 (463)
239 PRK06249 2-dehydropantoate 2-r 96.5 0.0059 1.3E-07 44.9 4.8 30 60-89 5-34 (313)
240 PRK06292 dihydrolipoamide dehy 96.5 0.0049 1.1E-07 47.2 4.5 30 60-89 169-198 (460)
241 KOG2311 NAD/FAD-utilizing prot 96.5 0.0029 6.2E-08 50.9 3.3 30 60-89 28-57 (679)
242 PRK06115 dihydrolipoamide dehy 96.4 0.0049 1.1E-07 47.7 4.5 30 60-89 174-203 (466)
243 PRK06912 acoL dihydrolipoamide 96.4 0.0047 1E-07 47.6 4.4 29 61-89 171-199 (458)
244 PRK05249 soluble pyridine nucl 96.4 0.005 1.1E-07 47.1 4.5 30 60-89 175-204 (461)
245 PRK13512 coenzyme A disulfide 96.4 0.0051 1.1E-07 47.2 4.5 29 61-89 149-177 (438)
246 PF01488 Shikimate_DH: Shikima 96.4 0.008 1.7E-07 39.4 4.9 30 60-89 12-42 (135)
247 PRK06467 dihydrolipoamide dehy 96.4 0.0052 1.1E-07 47.6 4.6 29 61-89 175-203 (471)
248 PRK06129 3-hydroxyacyl-CoA deh 96.4 0.0051 1.1E-07 45.2 4.3 29 61-89 3-31 (308)
249 TIGR01421 gluta_reduc_1 glutat 96.4 0.0056 1.2E-07 47.2 4.6 29 61-89 167-195 (450)
250 PRK09260 3-hydroxybutyryl-CoA 96.4 0.006 1.3E-07 44.4 4.4 29 61-89 2-30 (288)
251 PRK07846 mycothione reductase; 96.4 0.0059 1.3E-07 47.2 4.5 29 61-89 167-195 (451)
252 PRK08293 3-hydroxybutyryl-CoA 96.3 0.0064 1.4E-07 44.2 4.3 29 61-89 4-32 (287)
253 PRK14694 putative mercuric red 96.3 0.0062 1.4E-07 47.0 4.5 30 60-89 178-207 (468)
254 PRK07818 dihydrolipoamide dehy 96.3 0.0065 1.4E-07 46.8 4.5 29 61-89 173-201 (466)
255 PRK08229 2-dehydropantoate 2-r 96.3 0.0067 1.5E-07 44.7 4.3 29 61-89 3-31 (341)
256 PRK13748 putative mercuric red 96.3 0.0065 1.4E-07 47.7 4.5 29 61-89 271-299 (561)
257 PRK09564 coenzyme A disulfide 96.3 0.0077 1.7E-07 45.7 4.7 29 61-89 150-178 (444)
258 TIGR03452 mycothione_red mycot 96.3 0.0067 1.5E-07 46.8 4.4 29 61-89 170-198 (452)
259 TIGR01316 gltA glutamate synth 96.3 0.0067 1.4E-07 46.8 4.4 30 60-89 272-301 (449)
260 PRK06327 dihydrolipoamide dehy 96.3 0.0071 1.5E-07 46.8 4.5 29 61-89 184-212 (475)
261 PRK12831 putative oxidoreducta 96.3 0.0067 1.5E-07 47.2 4.4 30 60-89 281-310 (464)
262 PRK14989 nitrite reductase sub 96.3 0.0056 1.2E-07 51.2 4.1 29 61-89 4-36 (847)
263 PTZ00052 thioredoxin reductase 96.2 0.0074 1.6E-07 47.3 4.5 29 61-89 183-211 (499)
264 KOG2852 Possible oxidoreductas 96.2 0.0022 4.7E-08 48.7 1.4 31 59-89 9-45 (380)
265 TIGR03140 AhpF alkyl hydropero 96.2 0.0072 1.6E-07 47.4 4.4 30 60-89 352-381 (515)
266 TIGR01438 TGR thioredoxin and 96.2 0.0077 1.7E-07 47.1 4.3 29 61-89 181-209 (484)
267 TIGR02374 nitri_red_nirB nitri 96.2 0.0076 1.6E-07 49.8 4.5 29 61-89 141-169 (785)
268 TIGR01292 TRX_reduct thioredox 96.2 0.0091 2E-07 42.2 4.3 30 60-89 141-170 (300)
269 PRK14727 putative mercuric red 96.2 0.0086 1.9E-07 46.5 4.5 29 61-89 189-217 (479)
270 PRK07530 3-hydroxybutyryl-CoA 96.2 0.0092 2E-07 43.4 4.4 29 61-89 5-33 (292)
271 PRK06116 glutathione reductase 96.1 0.0093 2E-07 45.7 4.5 30 60-89 167-196 (450)
272 PRK10262 thioredoxin reductase 96.1 0.0094 2E-07 43.5 4.3 30 60-89 146-175 (321)
273 KOG4716 Thioredoxin reductase 96.1 0.0062 1.3E-07 47.4 3.4 30 60-89 19-48 (503)
274 PRK07066 3-hydroxybutyryl-CoA 96.1 0.0097 2.1E-07 44.8 4.3 29 61-89 8-36 (321)
275 PRK15317 alkyl hydroperoxide r 96.1 0.0096 2.1E-07 46.7 4.4 30 60-89 351-380 (517)
276 COG1249 Lpd Pyruvate/2-oxoglut 96.0 0.011 2.4E-07 46.4 4.6 30 60-89 173-202 (454)
277 PRK07819 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 43.5 4.2 29 61-89 6-34 (286)
278 PRK07845 flavoprotein disulfid 96.0 0.011 2.3E-07 45.8 4.5 29 61-89 178-206 (466)
279 PRK11064 wecC UDP-N-acetyl-D-m 96.0 0.0091 2E-07 46.0 4.1 29 61-89 4-32 (415)
280 TIGR01424 gluta_reduc_2 glutat 96.0 0.011 2.4E-07 45.3 4.5 29 61-89 167-195 (446)
281 TIGR03143 AhpF_homolog putativ 96.0 0.0096 2.1E-07 47.2 4.2 30 60-89 143-172 (555)
282 PRK02472 murD UDP-N-acetylmura 96.0 0.011 2.4E-07 45.1 4.4 28 61-88 6-33 (447)
283 PRK12770 putative glutamate sy 96.0 0.014 3.1E-07 43.3 4.7 29 61-89 173-202 (352)
284 PRK01710 murD UDP-N-acetylmura 95.9 0.012 2.5E-07 45.6 4.3 29 61-89 15-43 (458)
285 PRK06035 3-hydroxyacyl-CoA deh 95.9 0.013 2.8E-07 42.7 4.3 29 61-89 4-32 (291)
286 PRK04308 murD UDP-N-acetylmura 95.9 0.013 2.9E-07 44.9 4.5 29 61-89 6-34 (445)
287 PRK03369 murD UDP-N-acetylmura 95.9 0.013 2.8E-07 45.9 4.4 30 60-89 12-41 (488)
288 PRK05808 3-hydroxybutyryl-CoA 95.9 0.014 3.1E-07 42.2 4.4 29 61-89 4-32 (282)
289 PRK14989 nitrite reductase sub 95.9 0.012 2.7E-07 49.2 4.5 29 61-89 146-174 (847)
290 cd01075 NAD_bind_Leu_Phe_Val_D 95.9 0.017 3.7E-07 40.4 4.6 30 60-89 28-57 (200)
291 PLN02507 glutathione reductase 95.8 0.014 3.1E-07 45.7 4.5 29 61-89 204-232 (499)
292 KOG4254 Phytoene desaturase [C 95.8 0.011 2.5E-07 47.1 3.8 31 59-89 13-43 (561)
293 PRK08010 pyridine nucleotide-d 95.8 0.016 3.4E-07 44.3 4.5 30 60-89 158-187 (441)
294 TIGR00518 alaDH alanine dehydr 95.8 0.017 3.8E-07 43.9 4.5 30 60-89 167-196 (370)
295 TIGR01763 MalateDH_bact malate 95.7 0.018 4E-07 42.7 4.5 29 61-89 2-31 (305)
296 PTZ00058 glutathione reductase 95.7 0.017 3.6E-07 46.4 4.5 30 60-89 237-266 (561)
297 PRK04690 murD UDP-N-acetylmura 95.7 0.015 3.3E-07 45.3 4.1 29 61-89 9-37 (468)
298 PRK00094 gpsA NAD(P)H-dependen 95.7 0.019 4E-07 41.8 4.4 29 61-89 2-30 (325)
299 PRK14618 NAD(P)H-dependent gly 95.7 0.019 4.1E-07 42.4 4.3 29 61-89 5-33 (328)
300 PRK06130 3-hydroxybutyryl-CoA 95.6 0.021 4.6E-07 41.7 4.4 29 61-89 5-33 (311)
301 PRK14619 NAD(P)H-dependent gly 95.6 0.025 5.4E-07 41.6 4.8 30 60-89 4-33 (308)
302 PRK00141 murD UDP-N-acetylmura 95.6 0.022 4.7E-07 44.4 4.6 30 60-89 15-44 (473)
303 PRK11749 dihydropyrimidine deh 95.5 0.022 4.8E-07 43.8 4.4 30 60-89 273-303 (457)
304 COG1252 Ndh NADH dehydrogenase 95.5 0.021 4.5E-07 44.4 4.2 30 60-89 3-34 (405)
305 PTZ00153 lipoamide dehydrogena 95.5 0.02 4.3E-07 46.8 4.3 29 61-89 313-341 (659)
306 PLN02546 glutathione reductase 95.4 0.025 5.3E-07 45.3 4.4 30 60-89 252-281 (558)
307 PRK09424 pntA NAD(P) transhydr 95.4 0.028 6.1E-07 44.8 4.6 30 60-89 165-194 (509)
308 PRK04148 hypothetical protein; 95.4 0.018 3.8E-07 38.6 2.9 28 61-89 18-45 (134)
309 PRK08306 dipicolinate synthase 95.4 0.031 6.8E-07 41.3 4.6 30 60-89 152-181 (296)
310 cd00401 AdoHcyase S-adenosyl-L 95.3 0.03 6.6E-07 43.6 4.6 30 60-89 202-231 (413)
311 PLN02545 3-hydroxybutyryl-CoA 95.3 0.031 6.7E-07 40.7 4.4 29 61-89 5-33 (295)
312 PF03446 NAD_binding_2: NAD bi 95.3 0.034 7.4E-07 37.3 4.2 29 61-89 2-30 (163)
313 TIGR02354 thiF_fam2 thiamine b 95.3 0.033 7.1E-07 39.1 4.3 30 60-89 21-51 (200)
314 COG0771 MurD UDP-N-acetylmuram 95.3 0.021 4.5E-07 45.0 3.6 30 60-89 7-36 (448)
315 PLN02353 probable UDP-glucose 95.3 0.027 5.9E-07 44.4 4.2 29 61-89 2-32 (473)
316 PRK12778 putative bifunctional 95.3 0.028 6.1E-07 46.1 4.5 30 60-89 570-600 (752)
317 cd01080 NAD_bind_m-THF_DH_Cycl 95.2 0.04 8.7E-07 37.8 4.5 30 60-89 44-74 (168)
318 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.043 9.2E-07 37.6 4.6 30 60-89 28-58 (194)
319 PRK05562 precorrin-2 dehydroge 95.1 0.044 9.5E-07 39.5 4.6 30 60-89 25-54 (223)
320 PRK02006 murD UDP-N-acetylmura 95.1 0.031 6.8E-07 43.6 4.1 29 61-89 8-36 (498)
321 PF00899 ThiF: ThiF family; I 95.1 0.036 7.9E-07 35.9 3.8 28 61-88 3-31 (135)
322 COG2072 TrkA Predicted flavopr 95.0 0.03 6.6E-07 43.5 3.8 30 60-89 175-204 (443)
323 PRK07531 bifunctional 3-hydrox 95.0 0.037 8E-07 43.5 4.3 29 61-89 5-33 (495)
324 PRK01390 murD UDP-N-acetylmura 95.0 0.034 7.4E-07 42.8 4.0 29 61-89 10-38 (460)
325 TIGR02853 spore_dpaA dipicolin 95.0 0.045 9.8E-07 40.4 4.4 30 60-89 151-180 (287)
326 PRK00421 murC UDP-N-acetylmura 95.0 0.031 6.7E-07 43.1 3.7 30 60-89 7-37 (461)
327 TIGR01423 trypano_reduc trypan 95.0 0.041 8.9E-07 43.2 4.3 29 61-89 188-219 (486)
328 PRK12549 shikimate 5-dehydroge 94.9 0.053 1.2E-06 39.8 4.5 30 60-89 127-157 (284)
329 PRK01368 murD UDP-N-acetylmura 94.9 0.037 7.9E-07 43.1 3.8 29 60-89 6-34 (454)
330 PF06100 Strep_67kDa_ant: Stre 94.8 0.037 8E-07 44.2 3.8 29 61-89 3-35 (500)
331 COG1748 LYS9 Saccharopine dehy 94.8 0.044 9.6E-07 42.5 4.1 28 61-88 2-30 (389)
332 PRK12779 putative bifunctional 94.8 0.048 1E-06 46.3 4.6 30 60-89 447-476 (944)
333 PTZ00318 NADH dehydrogenase-li 94.8 0.05 1.1E-06 41.6 4.3 29 61-89 174-216 (424)
334 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.8 0.049 1.1E-06 43.2 4.4 29 61-89 6-34 (503)
335 TIGR00507 aroE shikimate 5-deh 94.7 0.06 1.3E-06 38.9 4.5 30 60-89 117-146 (270)
336 PLN02172 flavin-containing mon 94.7 0.039 8.5E-07 43.1 3.7 30 60-89 204-233 (461)
337 TIGR00936 ahcY adenosylhomocys 94.7 0.056 1.2E-06 42.0 4.4 30 60-89 195-224 (406)
338 PRK15116 sulfur acceptor prote 94.6 0.061 1.3E-06 39.7 4.3 30 60-89 30-60 (268)
339 KOG2665 Predicted FAD-dependen 94.6 0.027 5.9E-07 43.5 2.5 31 59-89 47-79 (453)
340 PRK06223 malate dehydrogenase; 94.6 0.063 1.4E-06 39.3 4.3 29 61-89 3-32 (307)
341 PLN02695 GDP-D-mannose-3',5'-e 94.6 0.069 1.5E-06 40.1 4.6 30 60-89 21-51 (370)
342 PF10727 Rossmann-like: Rossma 94.6 0.022 4.8E-07 37.6 1.7 29 60-88 10-38 (127)
343 PRK03806 murD UDP-N-acetylmura 94.5 0.058 1.3E-06 41.2 4.2 29 61-89 7-35 (438)
344 PRK12475 thiamine/molybdopteri 94.5 0.067 1.4E-06 40.4 4.4 29 60-88 24-53 (338)
345 PRK11730 fadB multifunctional 94.5 0.055 1.2E-06 44.5 4.2 29 61-89 314-342 (715)
346 PRK08268 3-hydroxy-acyl-CoA de 94.5 0.062 1.3E-06 42.6 4.4 29 61-89 8-36 (507)
347 PRK12548 shikimate 5-dehydroge 94.5 0.081 1.8E-06 38.8 4.7 30 60-89 126-156 (289)
348 TIGR00561 pntA NAD(P) transhyd 94.4 0.072 1.6E-06 42.6 4.6 30 60-89 164-193 (511)
349 KOG3923 D-aspartate oxidase [A 94.4 0.038 8.2E-07 42.0 2.8 23 61-83 4-26 (342)
350 PRK03803 murD UDP-N-acetylmura 94.4 0.056 1.2E-06 41.5 3.8 29 61-89 7-35 (448)
351 PLN02520 bifunctional 3-dehydr 94.3 0.075 1.6E-06 42.3 4.5 30 60-89 379-408 (529)
352 cd05191 NAD_bind_amino_acid_DH 94.3 0.13 2.7E-06 31.1 4.6 29 60-88 23-52 (86)
353 COG4529 Uncharacterized protei 94.3 0.046 1E-06 43.4 3.3 22 61-82 2-23 (474)
354 KOG2844 Dimethylglycine dehydr 94.3 0.071 1.5E-06 44.4 4.4 29 60-88 39-67 (856)
355 PRK05476 S-adenosyl-L-homocyst 94.3 0.078 1.7E-06 41.5 4.5 30 60-89 212-241 (425)
356 PRK05690 molybdopterin biosynt 94.3 0.089 1.9E-06 37.9 4.5 29 60-88 32-61 (245)
357 PF00670 AdoHcyase_NAD: S-aden 94.3 0.089 1.9E-06 36.3 4.2 30 60-89 23-52 (162)
358 TIGR01035 hemA glutamyl-tRNA r 94.2 0.083 1.8E-06 40.8 4.5 30 60-89 180-210 (417)
359 TIGR03452 mycothione_red mycot 94.2 0.043 9.3E-07 42.4 2.9 20 60-79 2-21 (452)
360 PTZ00082 L-lactate dehydrogena 94.2 0.094 2E-06 39.3 4.6 29 60-88 6-35 (321)
361 TIGR02356 adenyl_thiF thiazole 94.2 0.1 2.2E-06 36.4 4.5 29 60-88 21-50 (202)
362 PRK00066 ldh L-lactate dehydro 94.2 0.1 2.3E-06 38.9 4.8 29 60-88 6-36 (315)
363 PRK12810 gltD glutamate syntha 94.2 0.092 2E-06 40.8 4.6 29 60-88 281-310 (471)
364 TIGR02437 FadB fatty oxidation 94.1 0.074 1.6E-06 43.9 4.2 30 60-89 313-342 (714)
365 PRK00258 aroE shikimate 5-dehy 94.1 0.099 2.1E-06 38.0 4.5 30 60-89 123-153 (278)
366 PRK12814 putative NADPH-depend 94.1 0.087 1.9E-06 42.8 4.6 30 60-89 323-353 (652)
367 PRK07846 mycothione reductase; 94.1 0.045 9.8E-07 42.3 2.8 19 61-79 2-20 (451)
368 PRK08017 oxidoreductase; Provi 94.1 0.1 2.2E-06 36.2 4.3 28 61-88 3-31 (256)
369 KOG2404 Fumarate reductase, fl 94.0 0.06 1.3E-06 41.8 3.3 28 62-89 11-38 (477)
370 cd00757 ThiF_MoeB_HesA_family 94.0 0.1 2.3E-06 36.9 4.4 29 60-88 21-50 (228)
371 TIGR02355 moeB molybdopterin s 94.0 0.1 2.2E-06 37.6 4.3 29 60-88 24-53 (240)
372 PRK07688 thiamine/molybdopteri 94.0 0.1 2.2E-06 39.5 4.4 29 60-88 24-53 (339)
373 cd01065 NAD_bind_Shikimate_DH 94.0 0.14 3.1E-06 33.2 4.6 30 60-89 19-49 (155)
374 PRK00683 murD UDP-N-acetylmura 93.9 0.081 1.8E-06 40.4 3.9 28 61-88 4-31 (418)
375 COG1648 CysG Siroheme synthase 93.9 0.12 2.6E-06 36.8 4.5 30 60-89 12-41 (210)
376 PRK00045 hemA glutamyl-tRNA re 93.9 0.1 2.3E-06 40.2 4.5 30 60-89 182-212 (423)
377 COG0492 TrxB Thioredoxin reduc 93.9 0.1 2.2E-06 39.0 4.2 30 60-89 143-172 (305)
378 PRK08644 thiamine biosynthesis 93.9 0.12 2.5E-06 36.6 4.3 29 60-88 28-57 (212)
379 PF07991 IlvN: Acetohydroxy ac 93.9 0.14 3E-06 35.5 4.6 29 60-88 4-32 (165)
380 PRK11559 garR tartronate semia 93.9 0.1 2.3E-06 37.8 4.2 29 61-89 3-31 (296)
381 PRK08328 hypothetical protein; 93.9 0.12 2.5E-06 36.9 4.3 29 60-88 27-56 (231)
382 TIGR01809 Shik-DH-AROM shikima 93.8 0.12 2.5E-06 37.9 4.4 30 60-89 125-155 (282)
383 cd05311 NAD_bind_2_malic_enz N 93.8 0.12 2.7E-06 36.8 4.4 30 60-89 25-57 (226)
384 PTZ00117 malate dehydrogenase; 93.8 0.13 2.8E-06 38.4 4.6 29 60-88 5-34 (319)
385 PLN00141 Tic62-NAD(P)-related 93.8 0.22 4.8E-06 35.0 5.6 29 60-88 17-46 (251)
386 cd05293 LDH_1 A subgroup of L- 93.7 0.14 3E-06 38.3 4.7 25 60-84 3-27 (312)
387 TIGR03169 Nterm_to_SelD pyridi 93.7 0.13 2.7E-06 38.1 4.4 29 61-89 146-180 (364)
388 KOG2853 Possible oxidoreductas 93.6 0.063 1.4E-06 42.0 2.8 30 60-89 86-119 (509)
389 PRK15461 NADH-dependent gamma- 93.6 0.12 2.6E-06 37.9 4.1 28 62-89 3-30 (296)
390 TIGR02441 fa_ox_alpha_mit fatt 93.6 0.11 2.4E-06 43.0 4.3 30 60-89 335-364 (737)
391 cd08230 glucose_DH Glucose deh 93.5 0.15 3.3E-06 37.5 4.6 29 60-88 173-201 (355)
392 PLN02494 adenosylhomocysteinas 93.5 0.13 2.9E-06 40.9 4.5 30 60-89 254-283 (477)
393 PRK14031 glutamate dehydrogena 93.5 0.14 3.1E-06 40.3 4.6 29 60-88 228-256 (444)
394 PRK11154 fadJ multifunctional 93.5 0.11 2.3E-06 42.8 4.0 30 60-89 309-339 (708)
395 PRK09496 trkA potassium transp 93.5 0.15 3.3E-06 38.7 4.6 30 60-89 231-260 (453)
396 TIGR02964 xanthine_xdhC xanthi 93.4 0.15 3.3E-06 36.9 4.4 29 61-89 101-129 (246)
397 KOG3855 Monooxygenase involved 93.4 0.07 1.5E-06 42.2 2.8 22 60-81 36-57 (481)
398 PF02826 2-Hacid_dh_C: D-isome 93.4 0.18 3.8E-06 34.4 4.5 30 60-89 36-65 (178)
399 KOG2960 Protein involved in th 93.4 0.016 3.4E-07 42.7 -0.8 28 61-88 77-106 (328)
400 PRK13984 putative oxidoreducta 93.3 0.12 2.7E-06 41.2 4.1 25 60-84 418-442 (604)
401 COG3634 AhpF Alkyl hydroperoxi 93.3 0.079 1.7E-06 41.5 2.9 30 60-89 354-383 (520)
402 TIGR01202 bchC 2-desacetyl-2-h 93.3 0.16 3.5E-06 36.9 4.4 29 60-88 145-173 (308)
403 COG1063 Tdh Threonine dehydrog 93.3 0.15 3.3E-06 38.2 4.3 27 62-88 171-197 (350)
404 PRK14027 quinate/shikimate deh 93.3 0.17 3.7E-06 37.3 4.5 30 60-89 127-157 (283)
405 cd05213 NAD_bind_Glutamyl_tRNA 93.3 0.15 3.3E-06 37.7 4.3 29 60-88 178-207 (311)
406 PRK06057 short chain dehydroge 93.3 0.19 4.1E-06 35.1 4.5 30 60-89 7-37 (255)
407 cd05211 NAD_bind_Glu_Leu_Phe_V 93.3 0.19 4.2E-06 35.7 4.6 29 60-88 23-51 (217)
408 TIGR02440 FadJ fatty oxidation 93.2 0.14 2.9E-06 42.2 4.3 30 60-89 304-334 (699)
409 PRK14192 bifunctional 5,10-met 93.2 0.18 3.8E-06 37.4 4.5 30 60-89 159-189 (283)
410 PLN02662 cinnamyl-alcohol dehy 93.2 0.17 3.7E-06 36.4 4.3 29 60-88 4-33 (322)
411 PRK07523 gluconate 5-dehydroge 93.2 0.2 4.2E-06 34.9 4.5 29 60-88 10-39 (255)
412 PRK09288 purT phosphoribosylgl 93.1 0.19 4E-06 37.7 4.6 30 60-89 12-41 (395)
413 PF13434 K_oxygenase: L-lysine 93.1 0.11 2.4E-06 39.1 3.4 29 60-88 190-220 (341)
414 COG0240 GpsA Glycerol-3-phosph 93.1 0.16 3.5E-06 38.6 4.2 29 61-89 2-30 (329)
415 PRK08217 fabG 3-ketoacyl-(acyl 93.1 0.22 4.7E-06 34.2 4.6 29 60-88 5-34 (253)
416 PRK11199 tyrA bifunctional cho 93.1 0.15 3.2E-06 38.8 4.1 30 60-89 98-128 (374)
417 PRK07502 cyclohexadienyl dehyd 93.0 0.15 3.3E-06 37.3 3.9 29 61-89 7-37 (307)
418 COG2085 Predicted dinucleotide 93.0 0.17 3.8E-06 36.3 4.0 28 61-88 2-29 (211)
419 TIGR01832 kduD 2-deoxy-D-gluco 93.0 0.22 4.8E-06 34.3 4.6 29 60-88 5-34 (248)
420 PTZ00075 Adenosylhomocysteinas 93.0 0.18 3.9E-06 40.1 4.5 30 60-89 254-283 (476)
421 PRK14573 bifunctional D-alanyl 93.0 0.12 2.7E-06 42.8 3.7 29 61-89 5-34 (809)
422 PRK14194 bifunctional 5,10-met 93.0 0.17 3.6E-06 38.0 4.1 30 60-89 159-189 (301)
423 PRK05600 thiamine biosynthesis 92.9 0.19 4E-06 38.5 4.4 29 60-88 41-70 (370)
424 PRK07231 fabG 3-ketoacyl-(acyl 92.9 0.22 4.8E-06 34.2 4.4 29 61-89 6-35 (251)
425 PRK07060 short chain dehydroge 92.9 0.23 5.1E-06 34.0 4.5 30 60-89 9-39 (245)
426 TIGR01317 GOGAT_sm_gam glutama 92.9 0.2 4.3E-06 39.2 4.5 30 60-89 283-313 (485)
427 PLN02712 arogenate dehydrogena 92.8 0.43 9.3E-06 39.2 6.6 30 60-89 52-81 (667)
428 PTZ00345 glycerol-3-phosphate 92.8 0.21 4.5E-06 38.3 4.5 30 60-89 11-47 (365)
429 PRK12550 shikimate 5-dehydroge 92.8 0.22 4.9E-06 36.5 4.6 29 61-89 123-152 (272)
430 PRK12480 D-lactate dehydrogena 92.8 0.21 4.6E-06 37.5 4.5 30 60-89 146-175 (330)
431 PF13434 K_oxygenase: L-lysine 92.8 0.087 1.9E-06 39.7 2.4 28 61-88 3-31 (341)
432 PLN02240 UDP-glucose 4-epimera 92.7 0.22 4.9E-06 36.2 4.5 29 61-89 6-35 (352)
433 PRK07326 short chain dehydroge 92.7 0.23 5E-06 34.0 4.3 29 61-89 7-36 (237)
434 PRK14188 bifunctional 5,10-met 92.7 0.21 4.5E-06 37.4 4.3 30 60-89 158-188 (296)
435 PRK07774 short chain dehydroge 92.7 0.26 5.7E-06 33.9 4.6 29 61-89 7-36 (250)
436 cd01492 Aos1_SUMO Ubiquitin ac 92.7 0.21 4.6E-06 34.8 4.1 29 60-88 21-50 (197)
437 PRK08223 hypothetical protein; 92.7 0.2 4.3E-06 37.4 4.1 29 60-88 27-56 (287)
438 TIGR01318 gltD_gamma_fam gluta 92.7 0.21 4.6E-06 38.9 4.4 30 60-89 282-312 (467)
439 TIGR02622 CDP_4_6_dhtase CDP-g 92.6 0.24 5.1E-06 36.5 4.5 29 61-89 5-34 (349)
440 PRK14175 bifunctional 5,10-met 92.6 0.23 4.9E-06 37.1 4.4 30 60-89 158-188 (286)
441 PRK10637 cysG siroheme synthas 92.6 0.24 5.1E-06 38.7 4.6 30 60-89 12-41 (457)
442 PRK12439 NAD(P)H-dependent gly 92.5 0.23 4.9E-06 37.2 4.3 27 61-88 8-34 (341)
443 PRK05597 molybdopterin biosynt 92.5 0.24 5.2E-06 37.6 4.5 29 60-88 28-57 (355)
444 PRK15181 Vi polysaccharide bio 92.5 0.25 5.3E-06 36.5 4.5 29 61-89 16-45 (348)
445 cd00755 YgdL_like Family of ac 92.5 0.24 5.2E-06 35.6 4.3 29 60-88 11-40 (231)
446 COG1250 FadB 3-hydroxyacyl-CoA 92.4 0.18 4E-06 37.9 3.7 29 61-89 4-32 (307)
447 PF00743 FMO-like: Flavin-bind 92.4 0.22 4.7E-06 39.8 4.3 29 60-88 183-211 (531)
448 PRK12769 putative oxidoreducta 92.4 0.24 5.3E-06 40.0 4.6 30 60-89 468-498 (654)
449 PLN02896 cinnamyl-alcohol dehy 92.3 0.36 7.8E-06 35.6 5.1 29 60-88 10-39 (353)
450 PRK12749 quinate/shikimate deh 92.3 0.29 6.3E-06 36.1 4.6 30 60-89 124-154 (288)
451 COG0169 AroE Shikimate 5-dehyd 92.3 0.29 6.3E-06 36.4 4.6 30 60-89 126-156 (283)
452 PRK07831 short chain dehydroge 92.2 0.28 6.1E-06 34.3 4.3 29 60-88 17-47 (262)
453 PLN02653 GDP-mannose 4,6-dehyd 92.2 0.29 6.2E-06 35.8 4.5 29 60-88 6-35 (340)
454 cd01485 E1-1_like Ubiquitin ac 92.1 0.28 6.1E-06 34.2 4.2 29 60-88 19-48 (198)
455 KOG0042 Glycerol-3-phosphate d 92.1 0.051 1.1E-06 44.3 0.5 30 60-89 67-96 (680)
456 PRK08762 molybdopterin biosynt 92.1 0.26 5.6E-06 37.5 4.2 29 60-88 135-164 (376)
457 PRK06841 short chain dehydroge 92.1 0.34 7.4E-06 33.5 4.5 29 60-88 15-44 (255)
458 PLN02778 3,5-epimerase/4-reduc 92.1 0.46 9.9E-06 34.6 5.4 29 60-88 9-38 (298)
459 PF00289 CPSase_L_chain: Carba 92.0 0.2 4.3E-06 32.1 3.1 29 61-89 3-31 (110)
460 TIGR03366 HpnZ_proposed putati 92.0 0.37 7.9E-06 34.4 4.8 29 60-88 121-150 (280)
461 PRK10669 putative cation:proto 92.0 0.27 5.8E-06 39.1 4.3 30 60-89 417-446 (558)
462 PRK07454 short chain dehydroge 92.0 0.35 7.6E-06 33.3 4.5 29 61-89 7-36 (241)
463 PLN02214 cinnamoyl-CoA reducta 92.0 0.32 7E-06 35.9 4.5 29 60-88 10-39 (342)
464 TIGR03736 PRTRC_ThiF PRTRC sys 92.0 0.32 6.9E-06 35.4 4.4 24 60-83 11-34 (244)
465 PRK13394 3-hydroxybutyrate deh 91.9 0.38 8.1E-06 33.3 4.6 29 60-88 7-36 (262)
466 KOG1238 Glucose dehydrogenase/ 91.9 0.17 3.6E-06 41.5 3.2 30 60-89 57-87 (623)
467 PRK12828 short chain dehydroge 91.9 0.34 7.5E-06 32.8 4.3 30 60-89 7-37 (239)
468 COG0677 WecC UDP-N-acetyl-D-ma 91.9 0.16 3.5E-06 39.9 3.0 27 61-87 10-36 (436)
469 PRK06849 hypothetical protein; 91.9 0.3 6.5E-06 36.8 4.4 30 60-89 4-34 (389)
470 PLN02583 cinnamoyl-CoA reducta 91.9 0.35 7.6E-06 34.9 4.6 29 60-88 6-35 (297)
471 PF00996 GDI: GDP dissociation 91.9 0.23 5E-06 39.0 3.8 30 60-89 4-33 (438)
472 PLN02256 arogenate dehydrogena 91.8 0.36 7.8E-06 35.9 4.6 30 60-89 36-65 (304)
473 COG0686 Ald Alanine dehydrogen 91.8 0.15 3.2E-06 39.2 2.5 30 60-89 168-197 (371)
474 PTZ00142 6-phosphogluconate de 91.8 0.22 4.8E-06 39.3 3.6 29 61-89 2-30 (470)
475 PRK15182 Vi polysaccharide bio 91.8 0.22 4.8E-06 38.7 3.6 28 61-89 7-34 (425)
476 PRK05875 short chain dehydroge 91.7 0.39 8.5E-06 33.8 4.6 30 60-89 7-37 (276)
477 PRK05993 short chain dehydroge 91.7 0.36 7.9E-06 34.3 4.4 28 61-88 5-33 (277)
478 KOG1371 UDP-glucose 4-epimeras 91.7 0.22 4.8E-06 38.1 3.4 29 61-89 3-32 (343)
479 PRK13403 ketol-acid reductoiso 91.7 0.3 6.6E-06 37.3 4.1 30 60-89 16-45 (335)
480 PLN02657 3,8-divinyl protochlo 91.7 0.36 7.8E-06 36.7 4.6 30 60-89 60-90 (390)
481 PRK12939 short chain dehydroge 91.6 0.42 9E-06 32.8 4.5 30 60-89 7-37 (250)
482 PRK07577 short chain dehydroge 91.6 0.4 8.6E-06 32.7 4.4 29 61-89 4-33 (234)
483 PRK07878 molybdopterin biosynt 91.6 0.32 7E-06 37.3 4.3 29 60-88 42-71 (392)
484 PRK06949 short chain dehydroge 91.6 0.42 9.2E-06 33.0 4.6 29 60-88 9-38 (258)
485 PRK09310 aroDE bifunctional 3- 91.6 0.34 7.5E-06 38.1 4.5 30 60-89 332-361 (477)
486 PLN02206 UDP-glucuronate decar 91.6 0.34 7.3E-06 37.6 4.4 30 60-89 119-149 (442)
487 PRK09072 short chain dehydroge 91.6 0.41 8.8E-06 33.5 4.5 29 61-89 6-35 (263)
488 PRK12826 3-ketoacyl-(acyl-carr 91.6 0.35 7.6E-06 33.1 4.1 29 61-89 7-36 (251)
489 PRK12742 oxidoreductase; Provi 91.5 0.42 9.1E-06 32.6 4.5 29 60-88 6-35 (237)
490 PRK12829 short chain dehydroge 91.5 0.4 8.6E-06 33.2 4.4 30 60-89 11-41 (264)
491 PRK06505 enoyl-(acyl carrier p 91.5 0.37 7.9E-06 34.5 4.3 29 60-88 7-38 (271)
492 TIGR01372 soxA sarcosine oxida 91.4 0.34 7.3E-06 41.2 4.6 29 60-88 317-346 (985)
493 PRK05653 fabG 3-ketoacyl-(acyl 91.4 0.44 9.5E-06 32.4 4.4 29 61-89 6-35 (246)
494 PRK12775 putative trifunctiona 91.4 0.33 7.1E-06 41.6 4.5 29 60-88 571-600 (1006)
495 PRK12827 short chain dehydroge 91.4 0.46 1E-05 32.5 4.6 28 61-88 7-35 (249)
496 PLN02572 UDP-sulfoquinovose sy 91.4 0.63 1.4E-05 36.0 5.7 30 60-89 47-77 (442)
497 PRK05717 oxidoreductase; Valid 91.4 0.55 1.2E-05 32.7 5.0 30 60-89 10-40 (255)
498 COG0059 IlvC Ketol-acid reduct 91.4 0.29 6.4E-06 37.3 3.8 29 60-88 18-46 (338)
499 PRK07890 short chain dehydroge 91.4 0.41 8.9E-06 33.1 4.3 29 61-89 6-35 (258)
500 PRK14179 bifunctional 5,10-met 91.3 0.27 5.9E-06 36.6 3.5 30 60-89 158-188 (284)
No 1
>PRK12831 putative oxidoreductase; Provisional
Probab=99.72 E-value=7.9e-18 Score=129.78 Aligned_cols=80 Identities=26% Similarity=0.301 Sum_probs=63.2
Q ss_pred ccCCCCCCCcccccCCC--cchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976 6 LLPATSVTGVKWSRVQV--KGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS 74 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~ 74 (89)
.+.+|||+.+||+|||| +||..|+|+ .+++|+.|..... .+.+..+.. ...++|+|||+||+|++
T Consensus 79 ~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~--~~~~~~~~~--~~~~~V~IIG~GpAGl~ 154 (464)
T PRK12831 79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWAREN--GIDLSETEE--KKGKKVAVIGSGPAGLT 154 (464)
T ss_pred HHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHc--CCCCCCCcC--CCCCEEEEECcCHHHHH
Confidence 34579999999999998 999999997 4678888876542 222211211 23589999999999999
Q ss_pred HHHHHHHCCCceEEc
Q 046976 75 TAVELLDHGHEVLLI 89 (89)
Q Consensus 75 aA~~L~~~G~~V~v~ 89 (89)
+|++|+++|++|+||
T Consensus 155 aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 155 CAGDLAKMGYDVTIF 169 (464)
T ss_pred HHHHHHhCCCeEEEE
Confidence 999999999999986
No 2
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.72 E-value=7e-18 Score=140.20 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=61.3
Q ss_pred ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCC-CCCCCCCCCCCCCCceEEEECCCHHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPK-GLFLPEPEHYRGPKLKVAIIGAGLAGMST 75 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~IvG~G~aGl~a 75 (89)
..-+||++.+||+||||+||..|+|+. +++++.++.+.... .+.++ ......++|+||||||||++|
T Consensus 476 i~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~---~~~~~~kkVaIIGGGPAGLSA 552 (1012)
T TIGR03315 476 IYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKP---QGKSSAHKVAVIGAGPAGLSA 552 (1012)
T ss_pred HHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCC---CCCCCCCcEEEECCCHHHHHH
Confidence 345799999999999999999999974 56666665443211 11111 111235899999999999999
Q ss_pred HHHHHHCCCceEEc
Q 046976 76 AVELLDHGHEVLLI 89 (89)
Q Consensus 76 A~~L~~~G~~V~v~ 89 (89)
|++|+++|++|+||
T Consensus 553 A~~LAr~G~~VTV~ 566 (1012)
T TIGR03315 553 GYFLARAGHPVTVF 566 (1012)
T ss_pred HHHHHHCCCeEEEE
Confidence 99999999999986
No 3
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.70 E-value=2.1e-17 Score=127.21 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=62.3
Q ss_pred ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA 76 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA 76 (89)
.+.+|||+++||+||||+||..|+|+. +++|+.+.... ..+..+.... ....++|+|||+|++|+++|
T Consensus 83 ~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~--~~~~~~~~~~-~~~~~~VvIIGaGpAGl~aA 159 (471)
T PRK12810 83 LHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFE--EGWVKPDPPV-KRTGKKVAVVGSGPAGLAAA 159 (471)
T ss_pred HHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHH--cCCCCCCCCc-CCCCCEEEEECcCHHHHHHH
Confidence 356799999999999999999999963 67777776553 2221111111 11347999999999999999
Q ss_pred HHHHHCCCceEEc
Q 046976 77 VELLDHGHEVLLI 89 (89)
Q Consensus 77 ~~L~~~G~~V~v~ 89 (89)
.+|+++|++|+||
T Consensus 160 ~~l~~~G~~V~vi 172 (471)
T PRK12810 160 DQLARAGHKVTVF 172 (471)
T ss_pred HHHHhCCCcEEEE
Confidence 9999999999986
No 4
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.68 E-value=3.6e-17 Score=135.91 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=61.2
Q ss_pred ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA 76 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA 76 (89)
.+.+||++.+||+||||+||..|+|+. +++++.+..+........ .+.. ....++|+|||+||||++||
T Consensus 478 I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~-~~~~-~~tgKkVaIIGgGPAGLsAA 555 (1019)
T PRK09853 478 IYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWH-KPAG-IGSRKKVAVIGAGPAGLAAA 555 (1019)
T ss_pred HHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccC-CCCc-cCCCCcEEEECCCHHHHHHH
Confidence 356799999999999999999999974 566666654432111111 1111 11358999999999999999
Q ss_pred HHHHHCCCceEEc
Q 046976 77 VELLDHGHEVLLI 89 (89)
Q Consensus 77 ~~L~~~G~~V~v~ 89 (89)
++|+++|++|+||
T Consensus 556 ~~Lar~G~~VtV~ 568 (1019)
T PRK09853 556 YFLARAGHPVTVF 568 (1019)
T ss_pred HHHHHcCCeEEEE
Confidence 9999999999986
No 5
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.67 E-value=5.4e-17 Score=134.25 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=61.8
Q ss_pred ccCCCCCCCcccccCCC--cchhhcccc-------chhhhhhhccccCCCC---CCCCC-CCCCCCCCceEEEECCCHHH
Q 046976 6 LLPATSVTGVKWSRVQV--KGPRFHVRA-------SLDTNVSDMSVNAPKG---LFLPE-PEHYRGPKLKVAIIGAGLAG 72 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~-------~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~v~IvG~G~aG 72 (89)
...+||++++||||||+ +||..|+++ .+++|+.|........ .+... ........++|+|||+||||
T Consensus 239 i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAG 318 (944)
T PRK12779 239 IESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSG 318 (944)
T ss_pred HHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHH
Confidence 45689999999999999 799999985 4788887764321111 11100 00011125899999999999
Q ss_pred HHHHHHHHHCCCceEEc
Q 046976 73 MSTAVELLDHGHEVLLI 89 (89)
Q Consensus 73 l~aA~~L~~~G~~V~v~ 89 (89)
|+||++|+++||+|+||
T Consensus 319 LsaA~~Lar~G~~VtVf 335 (944)
T PRK12779 319 LINAYLLAVEGFPVTVF 335 (944)
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 99999999999999997
No 6
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.66 E-value=8.4e-17 Score=133.75 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=62.7
Q ss_pred ccCCCCCCCcccccCCC--cchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976 6 LLPATSVTGVKWSRVQV--KGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS 74 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~ 74 (89)
....|||+++||||||+ +||..|+|+ .+++|+.|.... ..+.++.. . .+.++|+|||+|||||+
T Consensus 370 i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~--~~~~~~~~-~--~~~~kVaIIG~GPAGLs 444 (1006)
T PRK12775 370 IYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARA--KPVKPPRF-S--KKLGKVAICGSGPAGLA 444 (1006)
T ss_pred HHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHH--cCCCCCCC-C--CCCCEEEEECCCHHHHH
Confidence 45679999999999998 899999996 367888887654 22222111 1 12479999999999999
Q ss_pred HHHHHHHCCCceEEc
Q 046976 75 TAVELLDHGHEVLLI 89 (89)
Q Consensus 75 aA~~L~~~G~~V~v~ 89 (89)
||.+|+++|++|+||
T Consensus 445 aA~~La~~G~~VtV~ 459 (1006)
T PRK12775 445 AAADLVKYGVDVTVY 459 (1006)
T ss_pred HHHHHHHcCCcEEEE
Confidence 999999999999997
No 7
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.66 E-value=1.2e-16 Score=127.25 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=63.0
Q ss_pred ccCCCCCCCcccccCC--Ccchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976 6 LLPATSVTGVKWSRVQ--VKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS 74 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~--~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~ 74 (89)
+...|||+++|||||| ++||..|+|+ .+++|+.|..+. ..+.+..+... ...++|+|||+||+||+
T Consensus 265 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~--~~~~~~~~~~~-~~~~~VaIIGaGpAGLs 341 (654)
T PRK12769 265 SHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALA--KGWRPDLSQVT-KSDKRVAIIGAGPAGLA 341 (654)
T ss_pred HHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHH--hCCCCCCcccc-cCCCEEEEECCCHHHHH
Confidence 4567999999999999 5899999996 367788887664 22322111111 13589999999999999
Q ss_pred HHHHHHHCCCceEEc
Q 046976 75 TAVELLDHGHEVLLI 89 (89)
Q Consensus 75 aA~~L~~~G~~V~v~ 89 (89)
+|.+|+++|++|+||
T Consensus 342 aA~~L~~~G~~V~V~ 356 (654)
T PRK12769 342 CADVLARNGVAVTVY 356 (654)
T ss_pred HHHHHHHCCCeEEEE
Confidence 999999999999986
No 8
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.65 E-value=1.6e-16 Score=122.52 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=62.3
Q ss_pred ccCCCCCCCcccccCC--Ccchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976 6 LLPATSVTGVKWSRVQ--VKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS 74 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~--~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~ 74 (89)
.+-+|||+++||+||| ++||..|+|+. +++|+.++... ..+.+..+... .+.++|+|||+||+|++
T Consensus 79 ~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~--~~~~~~~~~~~-~~~~~V~IIG~GpaGl~ 155 (467)
T TIGR01318 79 SHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALA--MGWRPDLSHVV-PTGKRVAVIGAGPAGLA 155 (467)
T ss_pred HHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHH--hCCCCCCCCcC-CCCCeEEEECCCHHHHH
Confidence 4568999999999999 69999999974 57777776553 22322211111 13489999999999999
Q ss_pred HHHHHHHCCCceEEc
Q 046976 75 TAVELLDHGHEVLLI 89 (89)
Q Consensus 75 aA~~L~~~G~~V~v~ 89 (89)
+|.+|+++|++|+||
T Consensus 156 aA~~l~~~G~~V~i~ 170 (467)
T TIGR01318 156 CADILARAGVQVVVF 170 (467)
T ss_pred HHHHHHHcCCeEEEE
Confidence 999999999999986
No 9
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.65 E-value=2.3e-16 Score=125.93 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=59.8
Q ss_pred ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA 76 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA 76 (89)
..-.|||+++||+||||+|+..|+|.. ++++..+.+......+.+ ... ....++|+|||+||+|+++|
T Consensus 133 ~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~-~~~--~~~~k~VaIIGaGpAGl~aA 209 (652)
T PRK12814 133 IKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIP-ERA--PKSGKKVAIIGAGPAGLTAA 209 (652)
T ss_pred HHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCC-CCC--CCCCCEEEEECCCHHHHHHH
Confidence 456799999999999999999999964 455555543321111111 111 11247999999999999999
Q ss_pred HHHHHCCCceEEc
Q 046976 77 VELLDHGHEVLLI 89 (89)
Q Consensus 77 ~~L~~~G~~V~v~ 89 (89)
.+|+++|++|+||
T Consensus 210 ~~La~~G~~Vtv~ 222 (652)
T PRK12814 210 YYLLRKGHDVTIF 222 (652)
T ss_pred HHHHHCCCcEEEE
Confidence 9999999999986
No 10
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.64 E-value=3.2e-16 Score=124.73 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=63.6
Q ss_pred ccCCCCCCCcccccCC--Ccchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976 6 LLPATSVTGVKWSRVQ--VKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS 74 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~--~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~ 74 (89)
+...|||+++|||||| ++||..|+|+ .+++|+.|..+. .++.+..+... ...++|+|||+||+||+
T Consensus 248 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~--~~~~~~~~~~~-~~~kkVaIIG~GpaGl~ 324 (639)
T PRK12809 248 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALA--MGWRPDVSKVV-PRSEKVAVIGAGPAGLG 324 (639)
T ss_pred HHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHH--hCCCCCCCccc-CCCCEEEEECcCHHHHH
Confidence 4567999999999999 6899999996 367888887664 33333221111 12589999999999999
Q ss_pred HHHHHHHCCCceEEc
Q 046976 75 TAVELLDHGHEVLLI 89 (89)
Q Consensus 75 aA~~L~~~G~~V~v~ 89 (89)
+|+.|+++|++|+||
T Consensus 325 aA~~L~~~G~~Vtv~ 339 (639)
T PRK12809 325 CADILARAGVQVDVF 339 (639)
T ss_pred HHHHHHHcCCcEEEE
Confidence 999999999999986
No 11
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.64 E-value=3.3e-16 Score=121.33 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=61.3
Q ss_pred ccCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA 76 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA 76 (89)
++-+||++.+||++|||+|+..|+|+. +++++.+.... ..+..+.... ....++|+|||+|++|+++|
T Consensus 83 ~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~--~~~~~~~~~~-~~~~~~V~IIGaG~aGl~aA 159 (485)
T TIGR01317 83 LHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQ--EGWVQPRPPS-KRTGKKVAVVGSGPAGLAAA 159 (485)
T ss_pred HHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHH--cCCCCCCCCc-CCCCCEEEEECCcHHHHHHH
Confidence 456799999999999999999999974 56666655443 2222211111 11247999999999999999
Q ss_pred HHHHHCCCceEEc
Q 046976 77 VELLDHGHEVLLI 89 (89)
Q Consensus 77 ~~L~~~G~~V~v~ 89 (89)
.+|+++|++|+||
T Consensus 160 ~~L~~~g~~V~v~ 172 (485)
T TIGR01317 160 DQLNRAGHTVTVF 172 (485)
T ss_pred HHHHHcCCeEEEE
Confidence 9999999999986
No 12
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.63 E-value=4.9e-16 Score=121.82 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=59.9
Q ss_pred ccCCCCCCCcccccCCCcchhhccccch---------hhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVKGPRFHVRASL---------DTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA 76 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~C~~~c~r~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA 76 (89)
..-+|||+++||++|||+||..|+|+.+ +++..|.... ..+.++.+.. ...++|+|||+||+||++|
T Consensus 78 ~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~--~~~~~~~~~~--~~g~~V~VIGaGpaGL~aA 153 (564)
T PRK12771 78 LTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIA--NGWKFPAPAP--DTGKRVAVIGGGPAGLSAA 153 (564)
T ss_pred HHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHH--cCCCCCCCCC--CCCCEEEEECCCHHHHHHH
Confidence 3567999999999999999999999754 4444443332 2222221111 2358999999999999999
Q ss_pred HHHHHCCCceEEc
Q 046976 77 VELLDHGHEVLLI 89 (89)
Q Consensus 77 ~~L~~~G~~V~v~ 89 (89)
..|+++|++|+||
T Consensus 154 ~~l~~~G~~V~v~ 166 (564)
T PRK12771 154 YHLRRMGHAVTIF 166 (564)
T ss_pred HHHHHCCCeEEEE
Confidence 9999999999885
No 13
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.62 E-value=3.7e-16 Score=129.67 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=58.5
Q ss_pred cCCCCCCCccc-ccCCCcchhhcccc--------chhhhhhhccccC---------CCCCCC---CCCCCCCCCCceEEE
Q 046976 7 LPATSVTGVKW-SRVQVKGPRFHVRA--------SLDTNVSDMSVNA---------PKGLFL---PEPEHYRGPKLKVAI 65 (89)
Q Consensus 7 ~~~~~~~~~~~-~iC~~~C~~~c~r~--------~l~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~v~I 65 (89)
.-+||++.+|| |||| +||..|+|+ .+++++.|..+.. ..+|.+ ..+.+.....++|+|
T Consensus 310 ~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaV 388 (1028)
T PRK06567 310 VIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILV 388 (1028)
T ss_pred HHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEE
Confidence 35899999999 9999 699999996 2566666542110 001211 011111123589999
Q ss_pred ECCCHHHHHHHHHHHHCCCceEEc
Q 046976 66 IGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 66 vG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
||+||||+++|++|+++||+|+||
T Consensus 389 VGaGPAGLsAA~~La~~Gh~Vtv~ 412 (1028)
T PRK06567 389 TGLGPAGFSLSYYLLRSGHNVTAI 412 (1028)
T ss_pred ECcCHHHHHHHHHHHhCCCeEEEE
Confidence 999999999999999999999986
No 14
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.62 E-value=8.1e-16 Score=117.94 Aligned_cols=81 Identities=26% Similarity=0.333 Sum_probs=60.6
Q ss_pred cccCCCCCCCcccccCCC--cchhhccccc-------------hhhhhhhccccCCCCCCC-CCCCCCCCCCceEEEECC
Q 046976 5 LLLPATSVTGVKWSRVQV--KGPRFHVRAS-------------LDTNVSDMSVNAPKGLFL-PEPEHYRGPKLKVAIIGA 68 (89)
Q Consensus 5 ~~~~~~~~~~~~~~iC~~--~C~~~c~r~~-------------l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~IvG~ 68 (89)
....+||++.+||++||| +|+..|+|+. +++++.+..... +... +.+.+ ...++|+|||+
T Consensus 66 ~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~--~~~~~~~~~~--~~~~~V~IIG~ 141 (449)
T TIGR01316 66 IIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQH--GIETEPEKAP--STHKKVAVIGA 141 (449)
T ss_pred HHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhc--CCCcCCCCCC--CCCCEEEEECc
Confidence 345689999999999999 9999998643 456666554331 1111 11111 13489999999
Q ss_pred CHHHHHHHHHHHHCCCceEEc
Q 046976 69 GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 69 G~aGl~aA~~L~~~G~~V~v~ 89 (89)
|++|+++|.+|+++|++|+||
T Consensus 142 G~aGl~aA~~l~~~G~~V~vi 162 (449)
T TIGR01316 142 GPAGLACASELAKAGHSVTVF 162 (449)
T ss_pred CHHHHHHHHHHHHCCCcEEEE
Confidence 999999999999999999986
No 15
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.60 E-value=1.1e-15 Score=116.97 Aligned_cols=80 Identities=26% Similarity=0.352 Sum_probs=60.1
Q ss_pred ccCCCCCCCcccccCCCc--chhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHH
Q 046976 6 LLPATSVTGVKWSRVQVK--GPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMS 74 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~~--C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~ 74 (89)
...+|||+++||++|||+ |++.|+|+. +++++.+..+. ..+.++.+.+ ...++|+|||+|++|++
T Consensus 79 ~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~--~~~~~~~~~~--~~~~~VvIIGgGpaGl~ 154 (457)
T PRK11749 79 ILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAME--TGWVLFKRAP--KTGKKVAVIGAGPAGLT 154 (457)
T ss_pred HHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHh--cCCCCCCCCc--cCCCcEEEECCCHHHHH
Confidence 356799999999999999 999999763 45555555443 2222111111 12489999999999999
Q ss_pred HHHHHHHCCCceEEc
Q 046976 75 TAVELLDHGHEVLLI 89 (89)
Q Consensus 75 aA~~L~~~G~~V~v~ 89 (89)
+|..|+++|++|+||
T Consensus 155 aA~~l~~~g~~V~li 169 (457)
T PRK11749 155 AAHRLARKGYDVTIF 169 (457)
T ss_pred HHHHHHhCCCeEEEE
Confidence 999999999999986
No 16
>PRK13984 putative oxidoreductase; Provisional
Probab=99.57 E-value=3.9e-15 Score=117.33 Aligned_cols=81 Identities=22% Similarity=0.127 Sum_probs=58.8
Q ss_pred cCCCCCCCcccccCCCcchhhccccc---------hhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHH
Q 046976 7 LPATSVTGVKWSRVQVKGPRFHVRAS---------LDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAV 77 (89)
Q Consensus 7 ~~~~~~~~~~~~iC~~~C~~~c~r~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~ 77 (89)
...||++.+||++||++||..|+|+. +++++.+.... ..+..........+.++|+|||+|++|+++|.
T Consensus 223 ~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~ 300 (604)
T PRK13984 223 YKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPV--EKYSEILDDEPEKKNKKVAIVGSGPAGLSAAY 300 (604)
T ss_pred HhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHH--cCcccccCCCcccCCCeEEEECCCHHHHHHHH
Confidence 44799999999999999999999963 45555554321 11111001111123589999999999999999
Q ss_pred HHHHCCCceEEc
Q 046976 78 ELLDHGHEVLLI 89 (89)
Q Consensus 78 ~L~~~G~~V~v~ 89 (89)
.|+++|++|+||
T Consensus 301 ~L~~~G~~v~vi 312 (604)
T PRK13984 301 FLATMGYEVTVY 312 (604)
T ss_pred HHHHCCCeEEEE
Confidence 999999999986
No 17
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.57 E-value=1.2e-15 Score=123.17 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=59.0
Q ss_pred ccCCCCCCCcccccCCC--cchhhccccchh----------hhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHH
Q 046976 6 LLPATSVTGVKWSRVQV--KGPRFHVRASLD----------TNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGM 73 (89)
Q Consensus 6 ~~~~~~~~~~~~~iC~~--~C~~~c~r~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl 73 (89)
...+|||+.+||+|||+ +|+..|+|..++ +++.|...... ..+ .+.......++|+|||+||||+
T Consensus 368 ~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~--~~~-~~~~~~~~~~~V~IIGaGpAGl 444 (752)
T PRK12778 368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESG--NIS-VPEVAEKNGKKVAVIGSGPAGL 444 (752)
T ss_pred HHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhC--CCC-CCCCCCCCCCEEEEECcCHHHH
Confidence 35679999999999996 899999997544 44444432211 111 1111112358999999999999
Q ss_pred HHHHHHHHCCCceEEc
Q 046976 74 STAVELLDHGHEVLLI 89 (89)
Q Consensus 74 ~aA~~L~~~G~~V~v~ 89 (89)
+||.+|+++|++|+||
T Consensus 445 ~aA~~l~~~G~~V~v~ 460 (752)
T PRK12778 445 SFAGDLAKRGYDVTVF 460 (752)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 9999999999999986
No 18
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.50 E-value=2.7e-14 Score=110.88 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=63.9
Q ss_pred CCCCCCCcccccCCCc--chhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHH
Q 046976 8 PATSVTGVKWSRVQVK--GPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTA 76 (89)
Q Consensus 8 ~~~~~~~~~~~iC~~~--C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA 76 (89)
..|+++.+|||+||+. |+..|++. .+++++.+.++. ..+.+..++. ....++|+|||+||+||++|
T Consensus 63 ~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~--~g~i~~~~~~-~~tg~~VaviGaGPAGl~~a 139 (457)
T COG0493 63 KTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADR--EGWIPGELPG-SRTGKKVAVIGAGPAGLAAA 139 (457)
T ss_pred HhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHH--hCCCCCCCCC-CCCCCEEEEECCCchHhhhH
Confidence 3467779999999977 99999985 378888888876 5555544321 12248999999999999999
Q ss_pred HHHHHCCCceEEc
Q 046976 77 VELLDHGHEVLLI 89 (89)
Q Consensus 77 ~~L~~~G~~V~v~ 89 (89)
..|+++||+|+||
T Consensus 140 ~~L~~~G~~Vtv~ 152 (457)
T COG0493 140 DDLSRAGHDVTVF 152 (457)
T ss_pred HHHHhCCCeEEEe
Confidence 9999999999986
No 19
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.43 E-value=1.1e-13 Score=116.21 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=65.4
Q ss_pred cCCCCCCCcccccCCCcchhhcccc---------chhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHH
Q 046976 7 LPATSVTGVKWSRVQVKGPRFHVRA---------SLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAV 77 (89)
Q Consensus 7 ~~~~~~~~~~~~iC~~~C~~~c~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~ 77 (89)
+--|-|++++||+||.+||..|+-+ ++|+.+.|.++. ++|..|-++... ..++|+|||+||+||+||-
T Consensus 1726 l~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~--egwm~p~pp~~r-tg~~vaiigsgpaglaaad 1802 (2142)
T KOG0399|consen 1726 LETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFE--EGWMKPCPPAFR-TGKRVAIIGSGPAGLAAAD 1802 (2142)
T ss_pred HhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHH--hcCCccCCcccc-cCcEEEEEccCchhhhHHH
Confidence 3446678999999999999999886 467777788776 777665443222 2589999999999999999
Q ss_pred HHHHCCCceEEc
Q 046976 78 ELLDHGHEVLLI 89 (89)
Q Consensus 78 ~L~~~G~~V~v~ 89 (89)
.|-+.||.|+||
T Consensus 1803 qlnk~gh~v~vy 1814 (2142)
T KOG0399|consen 1803 QLNKAGHTVTVY 1814 (2142)
T ss_pred HHhhcCcEEEEE
Confidence 999999999997
No 20
>PLN02487 zeta-carotene desaturase
Probab=98.78 E-value=1.3e-08 Score=81.09 Aligned_cols=59 Identities=85% Similarity=1.235 Sum_probs=47.9
Q ss_pred cchhhhhhhccccCCCCCCCCCCCCCCCCCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 31 ASLDTNVSDMSVNAPKGLFLPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+++++.|......+.++++.+...+++.++|+|||+|++||++|+.|+++|++|+||
T Consensus 46 ~~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~ 104 (569)
T PLN02487 46 SSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY 104 (569)
T ss_pred HHHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEE
Confidence 36899999988875556666555444344579999999999999999999999999986
No 21
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.61 E-value=4.2e-08 Score=70.31 Aligned_cols=29 Identities=45% Similarity=0.714 Sum_probs=25.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|..|+++|++|+||
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~ 30 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTII 30 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccc
Confidence 69999999999999999999999999986
No 22
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.56 E-value=5.4e-08 Score=70.65 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+||+||+||++|+++|.+|.||
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~ 59 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIF 59 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEE
Confidence 59999999999999999999999999986
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.54 E-value=1.5e-07 Score=70.38 Aligned_cols=30 Identities=40% Similarity=0.707 Sum_probs=28.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|+++|++|+||
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~ 47 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALI 47 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999999986
No 24
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.50 E-value=1.5e-07 Score=55.78 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=23.1
Q ss_pred EECCCHHHHHHHHHHHHCCCceEEc
Q 046976 65 IIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 65 IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
|||+|++||++|++|+++|++|+||
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~ 25 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVF 25 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEE
Confidence 8999999999999999999999986
No 25
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.50 E-value=9.2e-08 Score=68.93 Aligned_cols=29 Identities=45% Similarity=0.639 Sum_probs=25.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+||+||++|+++|++|.||
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~ 46 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVI 46 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEE
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEE
Confidence 79999999999999999999999999986
No 26
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.49 E-value=1.3e-07 Score=71.42 Aligned_cols=30 Identities=43% Similarity=0.653 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||||++||+.|+++|++|+||
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~Vlvl 32 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVL 32 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEE
Confidence 389999999999999999999999999986
No 27
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.45 E-value=3.2e-07 Score=71.00 Aligned_cols=30 Identities=50% Similarity=0.706 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|+++|++|+|+
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~Vlll 68 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLI 68 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 489999999999999999999999999885
No 28
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.43 E-value=2.5e-07 Score=70.71 Aligned_cols=30 Identities=43% Similarity=0.661 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|+.|+++|++|+|+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~ll 34 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVI 34 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 489999999999999999999999999986
No 29
>PRK09126 hypothetical protein; Provisional
Probab=98.43 E-value=2.5e-07 Score=68.75 Aligned_cols=29 Identities=41% Similarity=0.601 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+||+|+++|+.|+++|++|+||
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~ 32 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLI 32 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 79999999999999999999999999986
No 30
>PRK07045 putative monooxygenase; Reviewed
Probab=98.43 E-value=2.7e-07 Score=68.81 Aligned_cols=30 Identities=37% Similarity=0.555 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+||+|+++|..|+++|++|+||
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~ 34 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVV 34 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEE
Confidence 379999999999999999999999999986
No 31
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.42 E-value=2.9e-07 Score=66.61 Aligned_cols=29 Identities=38% Similarity=0.611 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|++||++|+++|++|+|+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~li 54 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVF 54 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999999999999999999985
No 32
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.41 E-value=2.7e-07 Score=71.84 Aligned_cols=30 Identities=37% Similarity=0.602 Sum_probs=28.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|+.||+||.+|+++|++|+||
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~Vl 32 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVL 32 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEE
Confidence 379999999999999999999999999996
No 33
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.41 E-value=3.2e-07 Score=68.58 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|..|+++|++|+||
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~ 32 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVI 32 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 69999999999999999999999999986
No 34
>PRK07236 hypothetical protein; Provisional
Probab=98.39 E-value=4.2e-07 Score=67.91 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||||++||++|..|+++|++|+||
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~ 35 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVF 35 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 379999999999999999999999999986
No 35
>PRK10015 oxidoreductase; Provisional
Probab=98.39 E-value=3.4e-07 Score=70.16 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||+.|+++|++|+|+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~Vlli 34 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVI 34 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 389999999999999999999999999985
No 36
>PRK06847 hypothetical protein; Provisional
Probab=98.39 E-value=4.4e-07 Score=66.93 Aligned_cols=29 Identities=41% Similarity=0.652 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+|++|+++|..|++.|++|+||
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~ 33 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLV 33 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 69999999999999999999999999986
No 37
>PRK10262 thioredoxin reductase; Provisional
Probab=98.38 E-value=5.2e-07 Score=65.92 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+||+||.+|+++|++|++|
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~i 35 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLI 35 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEE
Confidence 489999999999999999999999998875
No 38
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.38 E-value=3.6e-07 Score=68.47 Aligned_cols=29 Identities=41% Similarity=0.684 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+|++|+++|+.|+++|++|+||
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~vi 31 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLL 31 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEE
Confidence 69999999999999999999999999986
No 39
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.37 E-value=3.8e-07 Score=68.06 Aligned_cols=30 Identities=33% Similarity=0.617 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|+.|+++|++|+|+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~li 35 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALV 35 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999999986
No 40
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.37 E-value=4.8e-07 Score=65.52 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|+.|+++|++|+|+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vl 50 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVL 50 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999999985
No 41
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.37 E-value=4.7e-07 Score=68.05 Aligned_cols=29 Identities=48% Similarity=0.741 Sum_probs=28.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|+||||||+|+++|..|+++|++|+|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~ 31 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLL 31 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 79999999999999999999999999986
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.37 E-value=4.2e-07 Score=67.32 Aligned_cols=30 Identities=40% Similarity=0.687 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+||+|+++|+.|++.|++|+|+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~ 34 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALL 34 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 379999999999999999999999999986
No 43
>PRK08013 oxidoreductase; Provisional
Probab=98.37 E-value=4.3e-07 Score=68.34 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|+.|+++|++|+|+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~vi 32 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVL 32 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEE
Confidence 79999999999999999999999999986
No 44
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.37 E-value=4.3e-07 Score=67.33 Aligned_cols=30 Identities=40% Similarity=0.656 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH---GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~ 89 (89)
.++|+|||+||+|+++|+.|+++ |++|+||
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~ 35 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALI 35 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEE
Confidence 37999999999999999999998 9999986
No 45
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.37 E-value=5e-07 Score=68.05 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|+.|+++|++|+||
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~vi 31 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVIL 31 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEE
Confidence 69999999999999999999999999986
No 46
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.36 E-value=5.1e-07 Score=67.18 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=28.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|+|||+|++|+++|..|+++|++|+||
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~ 33 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLL 33 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence 79999999999999999999999999986
No 47
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.36 E-value=4.2e-07 Score=67.59 Aligned_cols=30 Identities=33% Similarity=0.668 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|+++|++|+|+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~li 34 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVL 34 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999999986
No 48
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=5.5e-07 Score=71.00 Aligned_cols=31 Identities=55% Similarity=0.837 Sum_probs=29.0
Q ss_pred CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.++|+|||||+|||+||..|.+.|++|+|+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VL 44 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVL 44 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence 3579999999999999999999999999986
No 49
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.5e-07 Score=67.02 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v 88 (89)
.+||+|||+||+||+||.+++++|++ ++|
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li 32 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLI 32 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence 37999999999999999999999998 554
No 50
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.34 E-value=5.9e-07 Score=67.52 Aligned_cols=29 Identities=45% Similarity=0.615 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|+|||||++|+++|+.|+++|++|+||
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~ 31 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTII 31 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 68999999999999999999999999986
No 51
>PLN02985 squalene monooxygenase
Probab=98.33 E-value=7.7e-07 Score=69.95 Aligned_cols=30 Identities=37% Similarity=0.571 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|++|+++|..|+++|++|+|+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vl 72 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVI 72 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 579999999999999999999999999986
No 52
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.33 E-value=6.5e-07 Score=67.11 Aligned_cols=29 Identities=38% Similarity=0.480 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+||+|+++|+.|+++|++|+|+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~ 31 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVL 31 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 69999999999999999999999999986
No 53
>PRK07208 hypothetical protein; Provisional
Probab=98.33 E-value=6.6e-07 Score=68.47 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||||++||+||++|+++|++|+|+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~ 33 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVL 33 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 379999999999999999999999999986
No 54
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.33 E-value=5.8e-07 Score=66.81 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|++|+++|+.|+++|++|+||
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~li 36 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALV 36 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEE
Confidence 379999999999999999999999999986
No 55
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.33 E-value=8.2e-07 Score=69.87 Aligned_cols=30 Identities=43% Similarity=0.659 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHH--CCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLD--HGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~--~G~~V~v~ 89 (89)
.++|+|||+||||++||..|++ .|++|+||
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~ 57 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDII 57 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEE
Confidence 4799999999999999999997 79999997
No 56
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.32 E-value=7.4e-07 Score=68.57 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||..|+++|++|+|+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li 31 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLV 31 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEe
Confidence 489999999999999999999999999985
No 57
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.31 E-value=6.4e-07 Score=67.33 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|..|+++|++|+|+
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~vi 33 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVI 33 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEE
Confidence 69999999999999999999999999986
No 58
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=6.7e-07 Score=66.75 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=27.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+||+|+++|..|++.|++|+||
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~ 30 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIF 30 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEe
Confidence 58999999999999999999999999986
No 59
>PRK08244 hypothetical protein; Provisional
Probab=98.31 E-value=7.6e-07 Score=68.70 Aligned_cols=29 Identities=38% Similarity=0.496 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+||+|+++|..|+++|++|+|+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~vi 31 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVI 31 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999999986
No 60
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.30 E-value=7.5e-07 Score=68.22 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||..++++|++|+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li 31 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIA 31 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 389999999999999999999999999985
No 61
>PRK06184 hypothetical protein; Provisional
Probab=98.30 E-value=8.3e-07 Score=68.71 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|+|||+||+||++|..|+++|++|+|+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~vi 32 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLI 32 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999999986
No 62
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.30 E-value=8.5e-07 Score=68.34 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+|++||+||.+|+++|++|+||
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vl 30 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLL 30 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 68999999999999999999999999986
No 63
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.29 E-value=8.7e-07 Score=67.48 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|+++|++|+|+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~li 32 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALV 32 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 389999999999999999999999999985
No 64
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.29 E-value=8.9e-07 Score=67.48 Aligned_cols=30 Identities=47% Similarity=0.602 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|.+|+++|++|+|+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~li 32 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALI 32 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEE
Confidence 379999999999999999999999999985
No 65
>PRK06116 glutathione reductase; Validated
Probab=98.29 E-value=8.6e-07 Score=67.73 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||..|+++|++|+|+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~li 33 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALI 33 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 379999999999999999999999999985
No 66
>PRK06185 hypothetical protein; Provisional
Probab=98.29 E-value=9.1e-07 Score=66.15 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|++|+++|+.|+++|++|+|+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~li 35 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVL 35 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 479999999999999999999999999986
No 67
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.29 E-value=8.6e-07 Score=69.99 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||||||||+||.+|+++|++|+||
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~li 33 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLII 33 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 379999999999999999999999999986
No 68
>PRK06126 hypothetical protein; Provisional
Probab=98.28 E-value=9.1e-07 Score=69.05 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+||+|+++|+.|+++|++|+||
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~vi 36 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILV 36 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 379999999999999999999999999986
No 69
>PRK05868 hypothetical protein; Validated
Probab=98.28 E-value=1e-06 Score=66.03 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+|++|+++|+.|+++|++|+||
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~vi 30 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMV 30 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 58999999999999999999999999986
No 70
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.27 E-value=1e-06 Score=68.55 Aligned_cols=30 Identities=47% Similarity=0.713 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|++||+||.+|.+.|++|+||
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEE
Confidence 479999999999999999999999999986
No 71
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.27 E-value=1.1e-06 Score=68.75 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||.+|++.|++|+|+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li 241 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMV 241 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 489999999999999999999999999985
No 72
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.25 E-value=1.2e-06 Score=64.50 Aligned_cols=30 Identities=40% Similarity=0.741 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|.+|+++|++|+++|.+|+|+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vi 33 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVL 33 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999999999885
No 73
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.25 E-value=1.4e-06 Score=68.00 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++||||||+|++||.+|++.|++|+|+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li 240 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIV 240 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 489999999999999999999999999885
No 74
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.25 E-value=1.3e-06 Score=66.37 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH----GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~ 89 (89)
+||+|||+|++||+||++|+++ |++|+||
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vl 35 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLV 35 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEE
Confidence 6999999999999999999999 9999986
No 75
>PLN02576 protoporphyrinogen oxidase
Probab=98.24 E-value=1.3e-06 Score=67.13 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~ 89 (89)
.++|+|||||++||+||++|.++ |++|+||
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vl 42 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVT 42 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEE
Confidence 36999999999999999999999 9999986
No 76
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=1.3e-06 Score=67.34 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+.||..++++|++|+++
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~li 32 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACV 32 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999999999999999999985
No 77
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.24 E-value=1.1e-06 Score=65.47 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=27.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
+||+|||+||+|+++|..|+++| ++|+|+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~li 32 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVV 32 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEE
Confidence 68999999999999999999996 899885
No 78
>PLN02463 lycopene beta cyclase
Probab=98.23 E-value=2.1e-06 Score=66.66 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|+++|++|.|+
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~li 57 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCI 57 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEe
Confidence 479999999999999999999999999885
No 79
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.22 E-value=1.5e-06 Score=67.17 Aligned_cols=30 Identities=43% Similarity=0.713 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|||||.||..++++|++|+||
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~li 32 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLI 32 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEE
Confidence 379999999999999999999999999986
No 80
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.22 E-value=1.5e-06 Score=64.04 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+|.+|+++|++|+++|++|+|+
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~li 32 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGL 32 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999999999999999999985
No 81
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.22 E-value=1.5e-06 Score=66.44 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+.+|.+|+++|++|+++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~li 34 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVI 34 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 489999999999999999999999999986
No 82
>PRK06370 mercuric reductase; Validated
Probab=98.22 E-value=1.5e-06 Score=66.62 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||.+|+++|++|+|+
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~li 34 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALI 34 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 389999999999999999999999999985
No 83
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.6e-06 Score=66.37 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|++||..|+++|++|+++
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~li 33 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIV 33 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 489999999999999999999999999985
No 84
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.21 E-value=1.6e-06 Score=66.19 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|..|+++|++|+|+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~li 30 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALV 30 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999999999999999999885
No 85
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=1.6e-06 Score=66.71 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|+++|..|+++|++|+++
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~li 33 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALV 33 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 489999999999999999999999999885
No 86
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.21 E-value=1.7e-06 Score=64.88 Aligned_cols=29 Identities=38% Similarity=0.677 Sum_probs=27.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+|.+|+++|++|++.|++|+|+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vl 30 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVF 30 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 49999999999999999999999999986
No 87
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.18 E-value=2e-06 Score=67.04 Aligned_cols=29 Identities=45% Similarity=0.563 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||||++|+.+|+.|+++|++|+|+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~Li 31 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELY 31 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 69999999999999999999999999986
No 88
>PLN02697 lycopene epsilon cyclase
Probab=98.18 E-value=3.7e-06 Score=66.69 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|+++|++|+++
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LI 137 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLI 137 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEe
Confidence 489999999999999999999999999885
No 89
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.17 E-value=2.1e-06 Score=65.99 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|++||.+|+++|++|+++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~li 33 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVV 33 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 379999999999999999999999999985
No 90
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=2.2e-06 Score=67.04 Aligned_cols=30 Identities=33% Similarity=0.686 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+||+|+++|+.|++.|++|+||
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~vi 52 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLL 52 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 479999999999999999999999999986
No 91
>PRK06834 hypothetical protein; Provisional
Probab=98.14 E-value=2.9e-06 Score=66.17 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|+|||+||+|+++|..|+++|++|+|+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vl 32 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIV 32 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999999986
No 92
>PRK14694 putative mercuric reductase; Provisional
Probab=98.14 E-value=2.9e-06 Score=65.36 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+++|..|++.|++|+|+
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~li 35 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLI 35 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 589999999999999999999999999885
No 93
>PRK07190 hypothetical protein; Provisional
Probab=98.13 E-value=3.1e-06 Score=66.00 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+||+||++|..|+++|++|+|+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~ll 34 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIV 34 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 379999999999999999999999999885
No 94
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.12 E-value=3.3e-06 Score=66.08 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+||+|+++|..|+++|++|+||
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~ 39 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVL 39 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999986
No 95
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.12 E-value=5.5e-06 Score=63.71 Aligned_cols=30 Identities=30% Similarity=0.626 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
..||+|||+|.+|+++|++|+++ |.+|+|+
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vl 55 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVL 55 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 47999999999999999999998 8999985
No 96
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=3.1e-06 Score=64.66 Aligned_cols=29 Identities=41% Similarity=0.547 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+||+|+++|.+|++.|++|+|+
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~li 32 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALI 32 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999999999999999999875
No 97
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.11 E-value=3.2e-06 Score=66.00 Aligned_cols=29 Identities=38% Similarity=0.660 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+|++|||+||+|++||..|+++|++|+|+
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~li 34 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALF 34 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999999999999999999885
No 98
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.10 E-value=6e-06 Score=65.39 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=26.5
Q ss_pred CceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~ 89 (89)
.++|+|||+||||+++|.+|. +.|++|+||
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~Vtlf 69 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIF 69 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEE
Confidence 479999999999999999764 679999986
No 99
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.10 E-value=6.4e-06 Score=66.26 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~ 89 (89)
..+|+||||||+||++|..|++. |++|+||
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~Ii 62 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIV 62 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEE
Confidence 47999999999999999999995 9999986
No 100
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.10 E-value=3.7e-06 Score=68.40 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=28.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||||++||++|+.|+++|++|+||
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~ 110 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVF 110 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 579999999999999999999999999986
No 101
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.09 E-value=3.7e-06 Score=63.07 Aligned_cols=29 Identities=34% Similarity=0.730 Sum_probs=27.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
+||+|||||.+|+++|++|+++ |++|+|+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~ll 33 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVL 33 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEE
Confidence 6999999999999999999999 9999986
No 102
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=4.8e-06 Score=64.44 Aligned_cols=30 Identities=40% Similarity=0.586 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+||+|+.+|..|++.|++|+++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~li 33 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCV 33 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 489999999999999999999999999985
No 103
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.07 E-value=4.4e-06 Score=67.49 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||||+||+.||+.+++.|.+|.++
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~Li 33 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLL 33 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEE
Confidence 489999999999999999999999999885
No 104
>PTZ00367 squalene epoxidase; Provisional
Probab=98.07 E-value=5.3e-06 Score=66.21 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|++|+++|..|+++|++|+|+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~Vl 62 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLML 62 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999999999986
No 105
>PRK13748 putative mercuric reductase; Provisional
Probab=98.07 E-value=4.7e-06 Score=65.21 Aligned_cols=30 Identities=43% Similarity=0.688 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|+++|..|+++|++|+|+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~li 127 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLI 127 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 489999999999999999999999999885
No 106
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.06 E-value=5.5e-06 Score=69.48 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|||||+||.+|++.|++|+|+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~li 192 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILV 192 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 479999999999999999999999999986
No 107
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.06 E-value=4.7e-06 Score=66.87 Aligned_cols=29 Identities=41% Similarity=0.617 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.+|+++|+.|+++|++|+|+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~Vl 289 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLY 289 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence 69999999999999999999999999986
No 108
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.05 E-value=4.8e-06 Score=63.60 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=25.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHC------CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH------GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~------G~~V~v~ 89 (89)
++|+|||||++||+||++|.+. |++|+||
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vl 36 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILV 36 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEE
Confidence 4799999999999999999986 3789986
No 109
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=4.5e-06 Score=65.16 Aligned_cols=30 Identities=53% Similarity=0.828 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|+|||.+|..|.+.|++|+||
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vf 35 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVF 35 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEE
Confidence 379999999999999999999999999986
No 110
>PLN02529 lysine-specific histone demethylase 1
Probab=98.05 E-value=7.6e-06 Score=67.24 Aligned_cols=30 Identities=43% Similarity=0.752 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|++||.||..|+++|++|+||
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~ 189 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVL 189 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEE
Confidence 479999999999999999999999999986
No 111
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.04 E-value=5.5e-06 Score=63.49 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|++|++||+.++++|.+|+|+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vl 33 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLL 33 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999999999999999999985
No 112
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.02 E-value=1.3e-05 Score=60.17 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=27.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~-~V~v~ 89 (89)
..||+|||+|.+|+++|+.|+++ |+ +|+|+
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vl 61 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVL 61 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 47999999999999999999995 95 89885
No 113
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.02 E-value=5.9e-06 Score=61.77 Aligned_cols=28 Identities=43% Similarity=0.777 Sum_probs=27.1
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+|+|||+|++|++||+.|++.|++|+||
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~ 30 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVF 30 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEE
Confidence 7999999999999999999999999997
No 114
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.01 E-value=6.9e-06 Score=63.53 Aligned_cols=29 Identities=45% Similarity=0.877 Sum_probs=27.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~li 30 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTII 30 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEE
Confidence 69999999999999999999999999985
No 115
>PRK07121 hypothetical protein; Validated
Probab=98.00 E-value=1.2e-05 Score=62.26 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|+.||+.++++|.+|+|+
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~Vill 49 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVL 49 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999999985
No 116
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.00 E-value=7.4e-06 Score=63.29 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|++||.++++.|.+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~li 33 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACI 33 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 379999999999999999999999999875
No 117
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.98 E-value=9e-06 Score=63.01 Aligned_cols=29 Identities=38% Similarity=0.743 Sum_probs=27.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|+|||||.+|+++|..|+++|++|+||
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~Vl 31 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVL 31 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999999999999996
No 118
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.97 E-value=8.2e-06 Score=64.68 Aligned_cols=29 Identities=45% Similarity=0.708 Sum_probs=24.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||||++||++|..|.+.|++|++|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~f 30 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCF 30 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEE
Confidence 79999999999999999999999999986
No 119
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.97 E-value=1.5e-05 Score=47.65 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=26.5
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+++|||+|+.|+..|..|++.|.+|+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEE
Confidence 6899999999999999999999999985
No 120
>PLN02507 glutathione reductase
Probab=97.95 E-value=1e-05 Score=63.32 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|+.+|..+++.|.+|.++
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~li 54 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGIC 54 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 489999999999999999999999999885
No 121
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.95 E-value=1.1e-05 Score=61.75 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|++|+++|..|++.|.+|+|+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~vi 30 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVV 30 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999985
No 122
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=1.8e-05 Score=58.85 Aligned_cols=30 Identities=50% Similarity=0.504 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|++|+.+|..|+++|++|++|
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~li 47 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVY 47 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999985
No 123
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.94 E-value=1.2e-05 Score=62.68 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||||.+|+++|+.|+++|++|+++
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~Ll 35 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLC 35 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 379999999999999999999999999985
No 124
>PRK06996 hypothetical protein; Provisional
Probab=97.93 E-value=1.1e-05 Score=60.76 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=26.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC----CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG----HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G----~~V~v~ 89 (89)
.++|+|||+||+|+++|+.|++.| ++|+|+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~ 44 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALI 44 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEe
Confidence 479999999999999999999997 368875
No 125
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.93 E-value=1.2e-05 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||||.+|+.+|+.|+++|++|+|+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~Lv 35 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLC 35 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 379999999999999999999999999985
No 126
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.93 E-value=1.1e-05 Score=63.63 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||||..|+++|+.|+++|++|+|+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~Ll 35 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILV 35 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999999999986
No 127
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1.3e-05 Score=63.85 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.||+|||+|.|||.||+.++++|.+|+|+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~li 32 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLF 32 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEE
Confidence 369999999999999999999999999985
No 128
>PLN02612 phytoene desaturase
Probab=97.91 E-value=2.4e-05 Score=62.19 Aligned_cols=30 Identities=60% Similarity=0.841 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|++||++|++|+++|++|+||
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~ 122 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILL 122 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 479999999999999999999999999986
No 129
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.90 E-value=1.4e-05 Score=62.41 Aligned_cols=30 Identities=43% Similarity=0.698 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|++||+.+++.|.+|+|+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~Vivl 90 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVIL 90 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999999999985
No 130
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=2.6e-05 Score=62.94 Aligned_cols=30 Identities=40% Similarity=0.618 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~Vili 64 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVF 64 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence 379999999999999999999999999985
No 131
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.89 E-value=2.5e-05 Score=62.81 Aligned_cols=30 Identities=37% Similarity=0.639 Sum_probs=27.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH----GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~ 89 (89)
.++++|||||.+||+||.+|++. |++|+||
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIl 55 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITIL 55 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEE
Confidence 47999999999999999999996 6799986
No 132
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.88 E-value=2.2e-05 Score=65.17 Aligned_cols=30 Identities=40% Similarity=0.739 Sum_probs=28.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|++|+.+|+.|+++|++|+|+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~ 267 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVL 267 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 579999999999999999999999999986
No 133
>PTZ00058 glutathione reductase; Provisional
Probab=97.88 E-value=2.4e-05 Score=62.36 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|+.||..+++.|.+|.++
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValI 77 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALV 77 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence 589999999999999999999999999875
No 134
>PLN02661 Putative thiazole synthesis
Probab=97.87 E-value=1.6e-05 Score=60.66 Aligned_cols=30 Identities=43% Similarity=0.605 Sum_probs=27.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~ 89 (89)
..||+|||+|++|+.+|++|++. |++|+|+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~vi 122 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAII 122 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence 37999999999999999999986 8999985
No 135
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.86 E-value=1.8e-05 Score=62.76 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|++|++||+.++++|.+|+|+
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~ll 38 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVL 38 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence 479999999999999999999999999985
No 136
>PLN02546 glutathione reductase
Probab=97.86 E-value=1.8e-05 Score=63.08 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|+.+|..++++|++|+++
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li 108 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVC 108 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999999885
No 137
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.83 E-value=2.1e-05 Score=63.18 Aligned_cols=29 Identities=38% Similarity=0.641 Sum_probs=27.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.||+.||+.+++.|.+|+|+
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~li 37 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVV 37 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 79999999999999999999999999985
No 138
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.83 E-value=2.1e-05 Score=62.06 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~Vill 45 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVV 45 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999999999985
No 139
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.83 E-value=2.3e-05 Score=61.12 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+|++|||+||+|+.+|..+++.|.+|.++
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~li 31 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLL 31 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999999999999999999875
No 140
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.82 E-value=2.3e-05 Score=61.81 Aligned_cols=30 Identities=50% Similarity=0.824 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+||.||+.+++.|.+|+|+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~Vivl 33 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLL 33 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 379999999999999999999999999985
No 141
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.81 E-value=2.3e-05 Score=62.55 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vl 41 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVL 41 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999999985
No 142
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.81 E-value=2.3e-05 Score=61.34 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=27.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+| +|++||+.+++.|.+|+|+
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vl 35 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALV 35 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEE
Confidence 3799999999 9999999999999999985
No 143
>PLN02568 polyamine oxidase
Probab=97.80 E-value=2.7e-05 Score=61.78 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=27.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC-----CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG-----HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G-----~~V~v~ 89 (89)
.+|+|||+|++||++|.+|++.| ++|+||
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~ 39 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVV 39 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEE
Confidence 69999999999999999999888 889886
No 144
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.79 E-value=2.5e-05 Score=62.37 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lv 41 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACI 41 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence 379999999999999999999999999885
No 145
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.78 E-value=2.9e-05 Score=62.48 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||||..|.++|+.|+++|++|+|+
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~Lv 100 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLV 100 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 489999999999999999999999999985
No 146
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=3e-05 Score=61.51 Aligned_cols=29 Identities=38% Similarity=0.672 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.||+.||+.+++.|.+|+|+
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lv 34 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVI 34 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999999985
No 147
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.77 E-value=3.4e-05 Score=59.77 Aligned_cols=29 Identities=38% Similarity=0.736 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+||+|||+|++|+.+|+.|+++|++|+|+
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi 31 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALV 31 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence 79999999999999999999999999885
No 148
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.76 E-value=3e-05 Score=60.65 Aligned_cols=30 Identities=47% Similarity=0.703 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+|.+||.+|+.|.+.||+|+|+
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~il 36 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQIL 36 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEE
Confidence 479999999999999999999999999985
No 149
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.76 E-value=3.1e-05 Score=61.83 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~ll 36 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALL 36 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence 69999999999999999999999999985
No 150
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.76 E-value=3.1e-05 Score=62.20 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.||+.||+.+++.|.+|+|+
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lv 58 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACI 58 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEE
Confidence 379999999999999999999999999985
No 151
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.76 E-value=3.1e-05 Score=62.51 Aligned_cols=30 Identities=33% Similarity=0.605 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~Vilv 79 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACI 79 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEE
Confidence 369999999999999999999999999985
No 152
>PRK14727 putative mercuric reductase; Provisional
Probab=97.76 E-value=3.5e-05 Score=59.68 Aligned_cols=30 Identities=43% Similarity=0.738 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|+.+|..|+++|.+|+++
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~i 45 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTII 45 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 489999999999999999999999999875
No 153
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.75 E-value=3.2e-05 Score=62.57 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.++++|.+|+|+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~Vivl 34 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVL 34 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEE
Confidence 379999999999999999999999999985
No 154
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.75 E-value=3.4e-05 Score=61.52 Aligned_cols=30 Identities=43% Similarity=0.763 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||||++|++||+.|++.|++|.++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LV 153 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLV 153 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEE
Confidence 479999999999999999999999999874
No 155
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.74 E-value=3.7e-05 Score=60.13 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~ 89 (89)
.+|++|||+||+|+.+|..++++ |.+|.++
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~li 33 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVI 33 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999997 8999875
No 156
>PLN02676 polyamine oxidase
Probab=97.73 E-value=4.1e-05 Score=59.84 Aligned_cols=30 Identities=37% Similarity=0.702 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
..+|+|||+|++||+||..|+++|+ +|+|+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vl 56 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILIL 56 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEe
Confidence 3799999999999999999999998 58875
No 157
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.73 E-value=4.3e-05 Score=59.21 Aligned_cols=30 Identities=37% Similarity=0.588 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~ 89 (89)
..+|+|||+|++|+++|+.|.++|.. ++||
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~ 38 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIF 38 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence 47999999999999999999999997 7775
No 158
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.73 E-value=4e-05 Score=61.14 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|+.||+.++++|.+|+|+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~Vivl 40 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVV 40 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence 379999999999999999999999999985
No 159
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.72 E-value=3.6e-05 Score=61.67 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
.||+|||+|.|||.||+.+++. |.+|+|+
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~li 42 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIV 42 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEE
Confidence 7999999999999999999998 9999985
No 160
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=3.9e-05 Score=60.85 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC---CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG---HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G---~~V~v~ 89 (89)
.||+|||+|.|||.||+.+++.| .+|+|+
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~ll 37 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVV 37 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEE
Confidence 69999999999999999999998 899875
No 161
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.68 E-value=5.7e-05 Score=56.97 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~ 89 (89)
++|+|||+|++|+.+|..|+++|+ +|+++
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li 34 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLF 34 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEe
Confidence 689999999999999999999987 56664
No 162
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.68 E-value=3e-05 Score=59.76 Aligned_cols=29 Identities=41% Similarity=0.709 Sum_probs=26.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+|.+||+||+.|+++ ++|++|
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLf 36 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLF 36 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEE
Confidence 47999999999999999999976 788886
No 163
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.68 E-value=5.4e-05 Score=58.49 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|++|+.+|..++++|++|+++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~ 30 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVI 30 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999885
No 164
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.67 E-value=5.3e-05 Score=61.61 Aligned_cols=30 Identities=30% Similarity=0.709 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+||+|..+|..+++.|.+|+|+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~li 145 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIF 145 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999885
No 165
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.67 E-value=5.7e-05 Score=59.87 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|+++|+.++++|.+|+|+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~li 35 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIV 35 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 379999999999999999999999999985
No 166
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.65 E-value=5.4e-05 Score=60.09 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=26.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
.||+|||+|.||+.||+.++++| .+|+|+
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vl 34 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVV 34 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEE
Confidence 69999999999999999999875 799885
No 167
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.63 E-value=6.7e-05 Score=58.31 Aligned_cols=28 Identities=43% Similarity=0.812 Sum_probs=25.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.|||.||+.+++.|. |+|+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~ll 30 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVL 30 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEE
Confidence 699999999999999999999997 8774
No 168
>PRK08275 putative oxidoreductase; Provisional
Probab=97.62 E-value=6.1e-05 Score=59.51 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
..||+|||+|.||+.||+.+++. |.+|+|+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~Vilv 40 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLL 40 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEE
Confidence 37999999999999999999987 6899875
No 169
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.61 E-value=7.7e-05 Score=59.10 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|++|+.+|+.++++|.+|+|+
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~ll 36 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVV 36 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEE
Confidence 379999999999999999999999999985
No 170
>PRK02106 choline dehydrogenase; Validated
Probab=97.58 E-value=9e-05 Score=58.45 Aligned_cols=30 Identities=40% Similarity=0.486 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHH-CCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLD-HGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~-~G~~V~v~ 89 (89)
.+|++|||+|.+|+.+|..|++ .|++|+|+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~Vlvl 35 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLL 35 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEe
Confidence 3799999999999999999999 89999986
No 171
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.57 E-value=7.9e-05 Score=58.68 Aligned_cols=28 Identities=39% Similarity=0.695 Sum_probs=26.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.||+.||+.+ +.|.+|+|+
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~Vill 35 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIV 35 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEE
Confidence 7999999999999999999 999999985
No 172
>PLN02815 L-aspartate oxidase
Probab=97.57 E-value=8e-05 Score=59.75 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.+++.| +|+|+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~Vvll 57 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAII 57 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEE
Confidence 379999999999999999999999 88874
No 173
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=97.57 E-value=7.9e-06 Score=53.00 Aligned_cols=26 Identities=8% Similarity=-0.161 Sum_probs=19.2
Q ss_pred cCCCCCCCcccccCCCc--chhhccccc
Q 046976 7 LPATSVTGVKWSRVQVK--GPRFHVRAS 32 (89)
Q Consensus 7 ~~~~~~~~~~~~iC~~~--C~~~c~r~~ 32 (89)
..+|||+++||+|||++ ||..|+|+.
T Consensus 62 ~~~np~p~vcGrvCp~p~~Ce~~C~r~~ 89 (111)
T PF14691_consen 62 REDNPFPAVCGRVCPHPKQCESACRRGK 89 (111)
T ss_dssp HHH-TTHHHHHHH--GGGSGGGG-GGGS
T ss_pred HHhCCCcccccCCCCCcchHHHHccCCC
Confidence 45689999999999999 999999963
No 174
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.54 E-value=9.5e-05 Score=61.57 Aligned_cols=30 Identities=40% Similarity=0.668 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.+++.|.+|+|+
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~ll 42 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLL 42 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 379999999999999999999999999985
No 175
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.54 E-value=9.4e-05 Score=58.12 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=27.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
..||+|||||+.|++.|++|++. |++|+|+
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~Vl 36 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMF 36 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 47999999999999999999985 7899885
No 176
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.52 E-value=0.00017 Score=57.34 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|+.+|+.++++|++|+|+
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~i 41 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVV 41 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999999885
No 177
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.51 E-value=0.00011 Score=57.70 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=25.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.||+.||+.+++ |.+|+|+
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lv 31 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIII 31 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEE
Confidence 699999999999999999976 8999885
No 178
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.51 E-value=0.00011 Score=56.61 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=25.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.|||.||+.++ .|.+|+|+
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~ll 32 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KDLKILMV 32 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cCCCEEEE
Confidence 79999999999999999974 79999985
No 179
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.51 E-value=0.00011 Score=57.14 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|.+|+.+|..|++.|++|+++
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhl 33 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHM 33 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEe
Confidence 489999999999999999999999999875
No 180
>PLN03000 amine oxidase
Probab=97.49 E-value=0.00014 Score=61.01 Aligned_cols=30 Identities=40% Similarity=0.739 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+|++|+.+|..|.+.|++|+||
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~Vl 213 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVL 213 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999986
No 181
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.49 E-value=0.00012 Score=58.33 Aligned_cols=29 Identities=38% Similarity=0.570 Sum_probs=26.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
.||+|||+|.|||.||+.+++.| .+|+|+
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~ll 35 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALI 35 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEE
Confidence 69999999999999999999874 789875
No 182
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00014 Score=55.86 Aligned_cols=29 Identities=38% Similarity=0.735 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||||.||+++++.|.++|.++.++
T Consensus 3 fDv~IIGGGLAGltc~l~l~~~Gk~c~iv 31 (421)
T COG3075 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIV 31 (421)
T ss_pred ccEEEEcCcHHHHHHHHHHHhcCCcEEEE
Confidence 79999999999999999999999988764
No 183
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.48 E-value=0.00013 Score=58.28 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=26.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
.||+|||+|.|||.||+.++++ |.+|+|+
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lv 34 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALI 34 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEE
Confidence 6999999999999999999987 5788875
No 184
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.47 E-value=0.00015 Score=56.80 Aligned_cols=29 Identities=38% Similarity=0.559 Sum_probs=26.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.+|++|||+||+|..+|..+++.|.+|.+
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kval 32 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVAL 32 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999999999655
No 185
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0001 Score=57.19 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=25.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVL 87 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~ 87 (89)
.+||+|||+||||-+||.|.+|+|.+.-
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG 238 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTG 238 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhh
Confidence 5899999999999999999999998753
No 186
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.47 E-value=0.00026 Score=56.36 Aligned_cols=30 Identities=47% Similarity=0.640 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|+.+|+.++++|++|+|+
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ 45 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLV 45 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999885
No 187
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.46 E-value=0.00015 Score=58.06 Aligned_cols=30 Identities=37% Similarity=0.659 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||..++++|.+|.++
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~ 35 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALL 35 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEE
Confidence 479999999999999999999999999885
No 188
>PRK12839 hypothetical protein; Provisional
Probab=97.46 E-value=0.0002 Score=57.13 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|+++|+.++++|.+|+|+
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~i 37 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVV 37 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999885
No 189
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.46 E-value=0.00013 Score=58.01 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=26.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.||+.||+.++ .|.+|+|+
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~li 37 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLI 37 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEE
Confidence 379999999999999999986 59999885
No 190
>PRK11445 putative oxidoreductase; Provisional
Probab=97.43 E-value=0.00012 Score=54.30 Aligned_cols=22 Identities=45% Similarity=0.493 Sum_probs=20.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHC
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH 82 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~ 82 (89)
+||+|||+||+|+++|..|+++
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~ 23 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK 23 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc
Confidence 6999999999999999999874
No 191
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.42 E-value=0.00018 Score=61.57 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=28.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.||+.||+.+++.|.+|+|+
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~Vivl 438 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILL 438 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999985
No 192
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.41 E-value=0.00019 Score=56.68 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
.+||+|||||..|+++|++|++.+ .+|+|+
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~Vl 76 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALI 76 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEE
Confidence 489999999999999999999964 588875
No 193
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.41 E-value=0.00018 Score=57.24 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=25.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.||+|||+|.||+.||+.+++. .+|+|+
T Consensus 6 ~DVlVIG~G~AGl~AAl~aa~~-~~Vill 33 (583)
T PRK08205 6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVL 33 (583)
T ss_pred ccEEEECccHHHHHHHHHHHhC-CCEEEE
Confidence 6999999999999999999986 899885
No 194
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.40 E-value=0.00021 Score=54.72 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=25.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
++|+|||+|++|+.+|..|++. +++|+|+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li 32 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIF 32 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEE
Confidence 5899999999999999999987 5688875
No 195
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.37 E-value=0.00022 Score=56.20 Aligned_cols=29 Identities=41% Similarity=0.694 Sum_probs=26.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.||+.||+.+++. .+|+|+
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~Vilv 36 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVL 36 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEE
Confidence 37999999999999999999986 899875
No 196
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.36 E-value=0.00023 Score=56.25 Aligned_cols=29 Identities=48% Similarity=0.942 Sum_probs=25.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.+|+|||+|.|||+||..|-+.|. +++||
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~Il 51 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLIL 51 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEE
Confidence 699999999999999999998876 66664
No 197
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.36 E-value=0.00024 Score=55.83 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=26.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|+|||.+||.+|++|++++-+|+|
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i 39 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTI 39 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceE
Confidence 58999999999999999999999988765
No 198
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.34 E-value=0.00029 Score=55.64 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
..||+|||||.+|+++|+.|++. |.+|+|+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vl 37 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVV 37 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEE
Confidence 37999999999999999999999 8899885
No 199
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.31 E-value=0.00027 Score=56.35 Aligned_cols=29 Identities=28% Similarity=0.653 Sum_probs=27.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+| +|++||+.+++.|.+|+|+
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~ 44 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIV 44 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEE
Confidence 4899999999 8999999999999999885
No 200
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.31 E-value=0.00036 Score=53.30 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=27.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+++|+|||+|.+|+.+|..|.+.+++|+|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI 39 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVI 39 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEE
Confidence 579999999999999999998778899885
No 201
>PLN02976 amine oxidase
Probab=97.26 E-value=0.00034 Score=61.59 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|++|+++|+.|.++|++|+||
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~Vl 722 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVL 722 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEE
Confidence 479999999999999999999999999986
No 202
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.21 E-value=0.00041 Score=53.81 Aligned_cols=30 Identities=47% Similarity=0.806 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|||+|.+||.||..|+++|.+|+|+
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~il 34 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLIL 34 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEE
Confidence 379999999999999999999999999885
No 203
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.20 E-value=0.00038 Score=53.47 Aligned_cols=30 Identities=47% Similarity=0.758 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+++|||+|.-|+++|+.|+++|.+++++
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killL 36 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLL 36 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEE
Confidence 479999999999999999999999888764
No 204
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.19 E-value=0.00058 Score=52.70 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|.+|+.+|..|+++|++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~ 45 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVV 45 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 368999999999999999999999999874
No 205
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.00028 Score=56.87 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|.||..||+..++.|.++.++
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLl 33 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLL 33 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEE
Confidence 389999999999999999999999998874
No 206
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.18 E-value=0.00059 Score=50.03 Aligned_cols=29 Identities=34% Similarity=0.558 Sum_probs=27.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|+|+|+.|+.+|..|+++|++|+++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~ 165 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLI 165 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999999999985
No 207
>PRK09897 hypothetical protein; Provisional
Probab=97.15 E-value=0.00059 Score=54.38 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=25.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~ 89 (89)
++|+|||+|++|+++|..|.+.+. +|+||
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lf 32 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIF 32 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEE
Confidence 589999999999999999998654 77775
No 208
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.11 E-value=0.00047 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=24.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.|||.||+.++ |.+|+|+
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~ll 36 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVL 36 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEE
Confidence 379999999999999999997 5688874
No 209
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.07 E-value=0.00091 Score=51.03 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+|..|+.+|..|+++|++|+++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~ 34 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILT 34 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999999874
No 210
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.05 E-value=0.00064 Score=53.22 Aligned_cols=30 Identities=40% Similarity=0.593 Sum_probs=28.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||+|.+|.+.|+.|++.|.+|+|+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVI 74 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVI 74 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEE
Confidence 479999999999999999999999999985
No 211
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.02 E-value=0.00092 Score=49.97 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=24.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~ 89 (89)
++++|||+|+||+.+|..|++++. +|+|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi 33 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLI 33 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEE
Confidence 589999999999999999988654 66664
No 212
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.99 E-value=0.001 Score=44.90 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|.++..+|..|++.|.+|+++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~ 196 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLV 196 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEE
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEE
Confidence 489999999999999999999999999875
No 213
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.99 E-value=0.00054 Score=54.45 Aligned_cols=27 Identities=41% Similarity=0.694 Sum_probs=25.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
||+|||+|.|||++|+.|++. ++|+|+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vl 35 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVL 35 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEE
Confidence 899999999999999999988 899875
No 214
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.99 E-value=0.00093 Score=53.45 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||||..|+..|..++.+|++|+++
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~Lv 41 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALV 41 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEE
Confidence 489999999999999999999999999875
No 215
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.98 E-value=0.00098 Score=52.05 Aligned_cols=30 Identities=40% Similarity=0.574 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
.+||+|||||..|++.|+.|++.+ ++|+|+
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~ll 34 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALL 34 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEE
Confidence 379999999999999999999998 899875
No 216
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.00061 Score=52.47 Aligned_cols=29 Identities=38% Similarity=0.615 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..|.|||+|.||..|||.++++|.+|.+|
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~ 32 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILY 32 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEE
Confidence 57899999999999999999999999875
No 217
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.95 E-value=0.00077 Score=53.55 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+|.+|...|..|++.|++|+|+
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllL 36 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVL 36 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEE
Confidence 489999999999999999999999999985
No 218
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.94 E-value=0.0012 Score=50.46 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.|++|||+|.+|+..|..|++.|++|+|+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIv 30 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIV 30 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEE
Confidence 68999999999999999999999999985
No 219
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0014 Score=51.13 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=25.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
.+|.|||+||||+++|..|.++ +.+|+||
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~ 51 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIF 51 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEee
Confidence 5999999999999999999985 5788875
No 220
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.82 E-value=0.002 Score=48.58 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|..|+..|..|++.|.+|+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv 173 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVI 173 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999999975
No 221
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.76 E-value=0.003 Score=42.81 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||||..|..-+..|.+.|++|+|+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 489999999999999999999999999985
No 222
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.76 E-value=0.0023 Score=47.83 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+.+|..|+++|.+|+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv 170 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLV 170 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 368999999999999999999999999875
No 223
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.76 E-value=0.0023 Score=49.35 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|++|+.+|..|++.|.+|+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli 209 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVV 209 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999999999875
No 224
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.74 E-value=0.0025 Score=48.62 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|++|+..|..|++.|.+|+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli 186 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVL 186 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999999999985
No 225
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.74 E-value=0.0013 Score=41.37 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|..-+..|.+.|.+|+|+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vi 36 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVI 36 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999999985
No 226
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.71 E-value=0.0032 Score=44.36 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|.+|...+..|.+.|.+|+|+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv 38 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVI 38 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999999985
No 227
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0019 Score=47.70 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|.|||+||++-.||.|++++.++.++|
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllf 37 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLF 37 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEE
Confidence 58999999999999999999999988876
No 228
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.66 E-value=0.0015 Score=51.78 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=21.2
Q ss_pred CCceEEEECCCHHHHHHHHHHHHC
Q 046976 59 PKLKVAIIGAGLAGMSTAVELLDH 82 (89)
Q Consensus 59 ~~~~v~IvG~G~aGl~aA~~L~~~ 82 (89)
...||+|||+|||||+||..|.+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQl 98 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQL 98 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHH
Confidence 358999999999999999998763
No 229
>PLN02785 Protein HOTHEAD
Probab=96.64 E-value=0.0022 Score=51.51 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=26.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|++|||+|.+|+..|..|++ +++|+|+
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLll 83 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLL 83 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEE
Confidence 4899999999999999999999 5899875
No 230
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.59 E-value=0.0036 Score=47.43 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+|++|+.+|..|++.|.+|+++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli 166 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLI 166 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 69999999999999999999999999875
No 231
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.57 E-value=0.0035 Score=47.88 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|++|+.+|..|++.|.+|+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli 199 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVI 199 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 369999999999999999999999999875
No 232
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.56 E-value=0.0036 Score=48.06 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=27.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|.+|+..|..|++.|.+|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli 195 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTIL 195 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 69999999999999999999999999985
No 233
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.52 E-value=0.0042 Score=47.62 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli 201 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIV 201 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999999875
No 234
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.50 E-value=0.0029 Score=49.66 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.+|++|||+||.|..||...++.|++..+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTac 67 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTAC 67 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEE
Confidence 48999999999999999999999998765
No 235
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.49 E-value=0.0049 Score=45.45 Aligned_cols=29 Identities=38% Similarity=0.416 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|+|+|..|...|.+|++.|++|+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv 31 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLI 31 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence 68999999999999999999999999874
No 236
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.48 E-value=0.0058 Score=42.90 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|...+..|.+.|.+|+|+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VI 39 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVI 39 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999999885
No 237
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.47 E-value=0.0054 Score=41.49 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=26.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|+|+|.+|..|+..|...|.+|+++
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~ 49 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVP 49 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEec
Confidence 379999999999999999999999999874
No 238
>PRK06370 mercuric reductase; Validated
Probab=96.47 E-value=0.0047 Score=47.48 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli 200 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVI 200 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999999999875
No 239
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.46 E-value=0.0059 Score=44.93 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|...|..|++.|++|+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~ 34 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFL 34 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 379999999999999999999999999874
No 240
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.45 E-value=0.0049 Score=47.17 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli 198 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVF 198 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 369999999999999999999999999885
No 241
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0029 Score=50.89 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||||.||..||...++.|-+.+++
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLl 57 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLL 57 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEe
Confidence 589999999999999999999999887764
No 242
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.45 E-value=0.0049 Score=47.65 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtli 203 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVV 203 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999999999875
No 243
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.45 E-value=0.0047 Score=47.58 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|++|+..|..|.+.|.+|+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli 199 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIV 199 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999999875
No 244
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.45 E-value=0.005 Score=47.10 Aligned_cols=30 Identities=33% Similarity=0.394 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli 204 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLI 204 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999999999885
No 245
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.44 E-value=0.0051 Score=47.18 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|..|+..|..|++.|.+|+++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli 177 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLI 177 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 68999999999999999999999999985
No 246
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.43 E-value=0.008 Score=39.39 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=27.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~ 89 (89)
.++++|+|+|-+|..++.+|.+.|.+ ++|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEE
Confidence 48999999999999999999999986 7764
No 247
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.43 E-value=0.0052 Score=47.63 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=27.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv 203 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVV 203 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 69999999999999999999999999985
No 248
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.0051 Score=45.23 Aligned_cols=29 Identities=52% Similarity=0.618 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|...|..|+++|++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~ 31 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLW 31 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEE
Confidence 47999999999999999999999999885
No 249
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.40 E-value=0.0056 Score=47.22 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|..|+..|..|++.|.+|+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli 195 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLV 195 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 69999999999999999999999999975
No 250
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.38 E-value=0.006 Score=44.36 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=27.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|..|...|..|+++|++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~ 30 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLV 30 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999999875
No 251
>PRK07846 mycothione reductase; Reviewed
Probab=96.36 E-value=0.0059 Score=47.15 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 195 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVV 195 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999999999985
No 252
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.33 E-value=0.0064 Score=44.23 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=27.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|..|...|..|+++|++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 58999999999999999999999999875
No 253
>PRK14694 putative mercuric reductase; Provisional
Probab=96.33 E-value=0.0062 Score=47.00 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv 207 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVL 207 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 369999999999999999999999999885
No 254
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.31 E-value=0.0065 Score=46.83 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|..|+..|..|++.|.+|+++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv 201 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIV 201 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999999999874
No 255
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.30 E-value=0.0067 Score=44.69 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|..|...|..|+++|++|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999999875
No 256
>PRK13748 putative mercuric reductase; Provisional
Probab=96.29 E-value=0.0065 Score=47.66 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli 299 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTIL 299 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 69999999999999999999999999985
No 257
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.28 E-value=0.0077 Score=45.74 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|++|+..|..|.+.|.+|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli 178 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRII 178 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 68999999999999999999999999875
No 258
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.28 E-value=0.0067 Score=46.81 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli 198 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIV 198 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 69999999999999999999999999985
No 259
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.28 E-value=0.0067 Score=46.84 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|+-+|..|.+.|.+|+++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv 301 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCL 301 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999999999875
No 260
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.27 E-value=0.0071 Score=46.85 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=27.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+|+.|+..|..|++.|.+|+++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli 212 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTIL 212 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999999999975
No 261
>PRK12831 putative oxidoreductase; Provisional
Probab=96.26 E-value=0.0067 Score=47.16 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|+-+|..|.+.|.+|+++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv 310 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIV 310 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999999999875
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.26 E-value=0.0056 Score=51.19 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=25.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH----GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~ 89 (89)
++|+|||+|++|+.+|..|.++ +++|+||
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi 36 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVF 36 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEE
Confidence 5899999999999999999765 4788885
No 263
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.24 E-value=0.0074 Score=47.28 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 211 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVA 211 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 58999999999999999999999999985
No 264
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.22 E-value=0.0022 Score=48.74 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=27.4
Q ss_pred CCceEEEECCCHHHHHHHHHHHHCC------CceEEc
Q 046976 59 PKLKVAIIGAGLAGMSTAVELLDHG------HEVLLI 89 (89)
Q Consensus 59 ~~~~v~IvG~G~aGl~aA~~L~~~G------~~V~v~ 89 (89)
+.++|.|||||..|.-+|++|++++ +.+++|
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~Itif 45 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIF 45 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEE
Confidence 3489999999999999999999998 677765
No 265
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.22 E-value=0.0072 Score=47.40 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|+.|+.+|..|++.|.+|+++
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli 381 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVL 381 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEE
Confidence 369999999999999999999999999875
No 266
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.18 E-value=0.0077 Score=47.08 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+++|||+|+.|+..|..|++.|.+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 209 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVM 209 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEE
Confidence 58999999999999999999999999985
No 267
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.18 E-value=0.0076 Score=49.80 Aligned_cols=29 Identities=45% Similarity=0.692 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|..|+.+|..|++.|.+|+|+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv 169 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVI 169 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 68999999999999999999999999875
No 268
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.17 E-value=0.0091 Score=42.23 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=27.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|+.|+..|..|++.+.+|+++
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v 170 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLV 170 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEE
Confidence 369999999999999999999999998874
No 269
>PRK14727 putative mercuric reductase; Provisional
Probab=96.16 E-value=0.0086 Score=46.48 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv 217 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTIL 217 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 68999999999999999999999999985
No 270
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.15 E-value=0.0092 Score=43.39 Aligned_cols=29 Identities=41% Similarity=0.418 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|...|..|+++|++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~ 33 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLN 33 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEE
Confidence 58999999999999999999999999875
No 271
>PRK06116 glutathione reductase; Validated
Probab=96.13 E-value=0.0093 Score=45.65 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv 196 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLF 196 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999999999875
No 272
>PRK10262 thioredoxin reductase; Provisional
Probab=96.10 E-value=0.0094 Score=43.48 Aligned_cols=30 Identities=40% Similarity=0.508 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|..|+..|..|++.|.+|+++
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv 175 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLI 175 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence 369999999999999999999999999875
No 273
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0062 Score=47.35 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|.+|||+|.+||+||...++.|.+|.++
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~l 48 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACL 48 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEE
Confidence 489999999999999999999999999875
No 274
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.09 E-value=0.0097 Score=44.76 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+|.-|..-|..++..|++|+++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~ 36 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAW 36 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999985
No 275
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.07 E-value=0.0096 Score=46.68 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|+.+|..|+..+.+|+++
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv 380 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVL 380 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999999999875
No 276
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.05 E-value=0.011 Score=46.45 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=28.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+.-|..+++.|.+|+|+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTii 202 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVV 202 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 379999999999999999999999999986
No 277
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.05 E-value=0.01 Score=43.53 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|.|||+|.-|..-|..+++.|++|+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~ 34 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVF 34 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEE
Confidence 48999999999999999999999999985
No 278
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.04 E-value=0.011 Score=45.83 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|..|+..|..|++.|.+|+++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli 206 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLV 206 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999999875
No 279
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.04 E-value=0.0091 Score=46.01 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||.|..|+..|..|+++|++|+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~ 32 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGV 32 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEE
Confidence 68999999999999999999999999875
No 280
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.02 E-value=0.011 Score=45.35 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli 195 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLI 195 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999999875
No 281
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.00 E-value=0.0096 Score=47.22 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|+..|..|++.|.+|+++
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli 172 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVI 172 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEE
Confidence 479999999999999999999999999885
No 282
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.011 Score=45.07 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=26.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
++++|+|+|..|+++|..|+++|++|++
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~ 33 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTV 33 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999999999999999986
No 283
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.96 E-value=0.014 Score=43.35 Aligned_cols=29 Identities=41% Similarity=0.606 Sum_probs=26.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHE-VLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~ 89 (89)
++++|||+|..|+.+|..|.+.|.+ |+|+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi 202 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLA 202 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 6999999999999999999999987 8874
No 284
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.95 E-value=0.012 Score=45.59 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=27.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|+|.|.+|+++|..|.++|++|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~ 43 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAF 43 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999999874
No 285
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.94 E-value=0.013 Score=42.67 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=26.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|...|..|+++|++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~ 32 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIV 32 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEE
Confidence 58999999999999999999999999875
No 286
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.013 Score=44.86 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=27.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|+|.|.+|+++|..|+++|++|+++
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~ 34 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAY 34 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999998864
No 287
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.013 Score=45.87 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|++|++++..|.++|++|+++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~ 41 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVC 41 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Confidence 368999999999999999999999999863
No 288
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.91 E-value=0.014 Score=42.20 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=26.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|.|||+|..|...|..++++|++|+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~ 32 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMV 32 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999999875
No 289
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.89 E-value=0.012 Score=49.19 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+.+|..|++.|.+|+|+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvV 174 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVI 174 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999999875
No 290
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.89 E-value=0.017 Score=40.36 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|.|-.|..+|..|.+.|++|+++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999999863
No 291
>PLN02507 glutathione reductase
Probab=95.84 E-value=0.014 Score=45.75 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli 232 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLF 232 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999999999985
No 292
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.83 E-value=0.011 Score=47.07 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=28.7
Q ss_pred CCceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 59 PKLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 59 ~~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.+|++|||+|.-||.+|.+|++.|.+|.|+
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vl 43 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVL 43 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEE
Confidence 3589999999999999999999999999875
No 293
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.82 E-value=0.016 Score=44.29 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|+.|+..|..|++.|.+|+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli 187 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTIL 187 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 369999999999999999999999999875
No 294
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.76 E-value=0.017 Score=43.92 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=27.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+++|+|+|.+|+.++..|.+.|.+|+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~ 196 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTIL 196 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999999988764
No 295
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.75 E-value=0.018 Score=42.68 Aligned_cols=29 Identities=34% Similarity=0.683 Sum_probs=25.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
++|.|||+|..|...|+.|+.+|+ +|+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv 31 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLL 31 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEE
Confidence 589999999999999999999987 77654
No 296
>PTZ00058 glutathione reductase; Provisional
Probab=95.73 E-value=0.017 Score=46.36 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|..|+..|..|++.|.+|+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli 266 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIF 266 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence 379999999999999999999999999985
No 297
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.015 Score=45.27 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|+|.|.+|.++|..|.++|.+|++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~ 37 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALT 37 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEE
Confidence 68999999999999999999999999874
No 298
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.71 E-value=0.019 Score=41.79 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=26.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|..|...|..|++.|++|+++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~ 30 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLW 30 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 47999999999999999999999999875
No 299
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.67 E-value=0.019 Score=42.38 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|...|..|+++|++|+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~ 33 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLW 33 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 68999999999999999999999999875
No 300
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.021 Score=41.71 Aligned_cols=29 Identities=41% Similarity=0.580 Sum_probs=26.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|..|...|..|++.|++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~ 33 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLI 33 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999875
No 301
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.62 E-value=0.025 Score=41.59 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|.|||+|.-|...|..|++.|++|+++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~ 33 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVW 33 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEE
Confidence 368999999999999999999999999875
No 302
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.022 Score=44.41 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=27.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|-+|+++|..|.++|++|+++
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~ 44 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVA 44 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 368999999999999999999999988763
No 303
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.54 E-value=0.022 Score=43.83 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=27.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++|+|||+|..|+.+|..|.+.|. +|+++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv 303 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIV 303 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence 4799999999999999999999998 78874
No 304
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.53 E-value=0.021 Score=44.45 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=25.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
+++|+|||||.+|+.+|..|.++- .+|+++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLV 34 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLV 34 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEE
Confidence 479999999999999999999974 677763
No 305
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.53 E-value=0.02 Score=46.83 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|||+|+.|+..|..|++.|.+|+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLI 341 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSF 341 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999985
No 306
>PLN02546 glutathione reductase
Probab=95.42 E-value=0.025 Score=45.34 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|..|+..|..|++.|.+|+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv 281 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVF 281 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 369999999999999999999999999885
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.38 E-value=0.028 Score=44.84 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=26.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|+|+|++|+.++..+...|.+|+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~ 194 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAF 194 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999877653
No 308
>PRK04148 hypothetical protein; Provisional
Probab=95.37 E-value=0.018 Score=38.61 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=25.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++||.| .|...|..|++.|++|+.+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVI 45 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEE
Confidence 689999999 9998999999999999853
No 309
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.37 E-value=0.031 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=27.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|.|.+|..++..|.+.|.+|+++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~ 181 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVG 181 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999988874
No 310
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.35 E-value=0.03 Score=43.57 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=27.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|+.|+.+|..+...|.+|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~ 231 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVT 231 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999988763
No 311
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.32 E-value=0.031 Score=40.69 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=27.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|...|..|++.|++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~ 33 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLL 33 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 58999999999999999999999999875
No 312
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.31 E-value=0.034 Score=37.28 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=25.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.+||-|..|...|..|.++|++|++|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~ 30 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVY 30 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEee
Confidence 58999999999999999999999999876
No 313
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.31 E-value=0.033 Score=39.08 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
..+|+|+|+|-.|...|..|++.|. +++++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lv 51 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILV 51 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999999999999 57653
No 314
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.29 E-value=0.021 Score=45.00 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|-|.+|+++|.+|.++|++|+++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~ 36 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVS 36 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999999874
No 315
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.29 E-value=0.027 Score=44.40 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC--CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG--HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v~ 89 (89)
++|.|||.|..|+..|..|+++| ++|+.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv 32 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV 32 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 58999999999999999999985 667643
No 316
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.28 E-value=0.028 Score=46.06 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~ 89 (89)
.++|+|||+|..|+-+|..+.+.|.+ |+++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv 600 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIV 600 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEe
Confidence 47999999999999999999999997 8874
No 317
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.23 E-value=0.04 Score=37.85 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=26.5
Q ss_pred CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||+|- +|..+|.+|.++|.+|++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~ 74 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVC 74 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEE
Confidence 48999999996 6999999999999888763
No 318
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.22 E-value=0.043 Score=37.56 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=26.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+ |..|...+..|++.|++|+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 379999997 999999999999999988764
No 319
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.15 E-value=0.044 Score=39.47 Aligned_cols=30 Identities=37% Similarity=0.570 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||||.+++-=+..|.+.|-+|+|+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVV 54 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYIL 54 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999999985
No 320
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.031 Score=43.58 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|+|.|.+|+++|..|.++|++|+++
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~ 36 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVA 36 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999998763
No 321
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.10 E-value=0.036 Score=35.91 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=24.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
.+|+|+|+|-.|...|..|++.|. ++++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~l 31 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITL 31 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceee
Confidence 699999999999999999999998 5554
No 322
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.03 Score=43.47 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=28.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.|+|+|||+|-+|...+..|++.|.+|+++
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~ 204 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLS 204 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEE
Confidence 589999999999999999999999999875
No 323
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.02 E-value=0.037 Score=43.53 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|..-|..|+++|++|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~ 33 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVF 33 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999885
No 324
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.034 Score=42.80 Aligned_cols=29 Identities=38% Similarity=0.538 Sum_probs=26.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|+|.|-+|+++|.+|.++|++|++.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~ 38 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAW 38 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999998763
No 325
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.98 E-value=0.045 Score=40.36 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|.|..|...|..|...|.+|+++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~ 180 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVG 180 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999998874
No 326
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.98 E-value=0.031 Score=43.15 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.9
Q ss_pred CceEEEECCCHHHHH-HHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMS-TAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~-aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|-+|++ +|..|.++|++|++.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~ 37 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGS 37 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEE
Confidence 368999999999999 599999999999863
No 327
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.95 E-value=0.041 Score=43.19 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHC---CCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH---GHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~---G~~V~v~ 89 (89)
++++|||+|+.|+..|..+... |.+|+++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli 219 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC 219 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 6999999999999999776554 8999885
No 328
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.87 E-value=0.053 Score=39.84 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++++|+|+|-+|.++++.|++.|. +|+|+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~ 157 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIF 157 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999999999998 67764
No 329
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.85 E-value=0.037 Score=43.12 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|.+|.++|..|. +|.+|+|+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~ 34 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVY 34 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEE
Confidence 379999999999999999999 49999874
No 330
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.84 E-value=0.037 Score=44.18 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.6
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC----ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH----EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~----~V~v~ 89 (89)
++.=|||+|.|+|+||.+|.+.|. +|+||
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIl 35 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHIL 35 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEE
Confidence 678899999999999999999754 66664
No 331
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.79 E-value=0.044 Score=42.46 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=26.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC-CceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG-HEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v 88 (89)
++|+|||+|-.|..+|..|++.| .+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~i 30 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTI 30 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEE
Confidence 58999999999999999999999 88886
No 332
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.77 E-value=0.048 Score=46.26 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|..|+-+|..+.+.|.+|+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv 476 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIV 476 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999999998874
No 333
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.77 E-value=0.05 Score=41.57 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=24.6
Q ss_pred ceEEEECCCHHHHHHHHHHHH--------------CCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLD--------------HGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~--------------~G~~V~v~ 89 (89)
++++|||+|++|+..|..|++ .+.+|+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv 216 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVL 216 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEE
Confidence 489999999999999999886 36788774
No 334
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.75 E-value=0.049 Score=43.17 Aligned_cols=29 Identities=45% Similarity=0.638 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|..-|..+++.|++|+++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~ 34 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLY 34 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999985
No 335
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.73 E-value=0.06 Score=38.90 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+|-+|.+.+..|++.|++|+++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~ 146 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIA 146 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999988774
No 336
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=94.72 E-value=0.039 Score=43.11 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|.+|+-.|..|++.+.+|+++
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~ 233 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIA 233 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence 479999999999999999999999999874
No 337
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.65 E-value=0.056 Score=42.04 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|+.|...|..|...|.+|+++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEE
Confidence 479999999999999999999999998874
No 338
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.62 E-value=0.061 Score=39.66 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
..+|+|+|.|-.|..+|..|++.|. +++++
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLi 60 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLI 60 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 3799999999999999999999995 66653
No 339
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=94.61 E-value=0.027 Score=43.50 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=26.7
Q ss_pred CCceEEEECCCHHHHHHHHHHHHC--CCceEEc
Q 046976 59 PKLKVAIIGAGLAGMSTAVELLDH--GHEVLLI 89 (89)
Q Consensus 59 ~~~~v~IvG~G~aGl~aA~~L~~~--G~~V~v~ 89 (89)
.++|.+|||+|.+|++.|..|.-+ +.+|.|+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vl 79 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVL 79 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEee
Confidence 368999999999999999888877 7788764
No 340
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.58 E-value=0.063 Score=39.27 Aligned_cols=29 Identities=38% Similarity=0.453 Sum_probs=25.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
++|+|||+|..|...|..++.+|+ +|.++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 589999999999999999999876 66653
No 341
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.56 E-value=0.069 Score=40.09 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=27.4
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+++|+|.|+ |..|...+..|.++|++|+.+
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v 51 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIAS 51 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEE
Confidence 589999998 999999999999999999863
No 342
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.56 E-value=0.022 Score=37.61 Aligned_cols=29 Identities=48% Similarity=0.689 Sum_probs=25.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
+.+|.|||+|..|...+..|.++|+.|.-
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~ 38 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVG 38 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 58999999999999999999999998754
No 343
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.54 E-value=0.058 Score=41.19 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=26.8
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|+|-|.+|++++..|.++|++|+++
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~ 35 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVI 35 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEE
Confidence 68999999999999999999999999763
No 344
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.52 E-value=0.067 Score=40.40 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=26.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|-.|...|..|++.|. ++++
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~l 53 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTI 53 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999999998 6665
No 345
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.50 E-value=0.055 Score=44.53 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=27.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|||+|.-|..-|..++..|++|+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~ 342 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMK 342 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999985
No 346
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.50 E-value=0.062 Score=42.59 Aligned_cols=29 Identities=45% Similarity=0.588 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|..-|..|++.|++|+++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~ 36 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLY 36 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999985
No 347
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.50 E-value=0.081 Score=38.84 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v~ 89 (89)
.++++|+|+|-+|.+++..|++.|.+ |+|+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~ 156 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIF 156 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999999999999986 8764
No 348
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.45 E-value=0.072 Score=42.62 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=27.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+++|+|+|++|+.++..+...|.+|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~ 193 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAF 193 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999988764
No 349
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.40 E-value=0.038 Score=42.00 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=21.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG 83 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G 83 (89)
.+|+|||+|..||+.|+.+.+.+
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~ 26 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELY 26 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhh
Confidence 69999999999999998888855
No 350
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.056 Score=41.46 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=26.7
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.-|+|+|-|-+|+++|..|.++|++|++.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~ 35 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVM 35 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999863
No 351
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.34 E-value=0.075 Score=42.34 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+|-+|.++++.|+++|.+|+++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~ 408 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIA 408 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999988764
No 352
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.33 E-value=0.13 Score=31.06 Aligned_cols=29 Identities=38% Similarity=0.548 Sum_probs=24.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v 88 (89)
.++++|+|.|-+|...+..|.+. +.++.+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v 52 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVL 52 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 37999999999999999999998 456655
No 353
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=0.046 Score=43.38 Aligned_cols=22 Identities=50% Similarity=0.812 Sum_probs=20.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHC
Q 046976 61 LKVAIIGAGLAGMSTAVELLDH 82 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~ 82 (89)
++|+|||+|++|+..|..|.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhC
Confidence 6999999999999999999885
No 354
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=94.30 E-value=0.071 Score=44.43 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
..+++|||+|..|..+|+.|+++|.++.|
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~av 67 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAV 67 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHccccceE
Confidence 37999999999999999999999998654
No 355
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.29 E-value=0.078 Score=41.47 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|.|..|...|..|...|.+|+++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999998874
No 356
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.29 E-value=0.089 Score=37.88 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=25.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||.|..|..+|..|++.|. ++++
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~l 61 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTL 61 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999999997 5544
No 357
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.28 E-value=0.089 Score=36.30 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|-|..|...|..|+..|.+|+|.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~ 52 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVT 52 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEE
Confidence 479999999999999999999999999884
No 358
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.24 E-value=0.083 Score=40.77 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~ 89 (89)
..+++|+|+|..|..++..|.+.| .+|+++
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~ 210 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIA 210 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999999 577764
No 359
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.24 E-value=0.043 Score=42.38 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.2
Q ss_pred CceEEEECCCHHHHHHHHHH
Q 046976 60 KLKVAIIGAGLAGMSTAVEL 79 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L 79 (89)
.+|++|||+||+|..+|..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~ 21 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF 21 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH
Confidence 38999999999999987654
No 360
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.21 E-value=0.094 Score=39.27 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|..|...|+.++..|+ ++.+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~L 35 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVL 35 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence 3699999999999999999999997 6444
No 361
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.18 E-value=0.1 Score=36.40 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=26.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||.|-.|...|..|++.|. ++++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~l 50 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVI 50 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999999997 6665
No 362
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.17 E-value=0.1 Score=38.87 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=25.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v 88 (89)
..+|+|||+|..|.+.|+.|+..|+ ++.+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L 36 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVI 36 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence 4799999999999999999999987 4444
No 363
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.16 E-value=0.092 Score=40.77 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
.++|+|||+|..|+.+|..+.+.|. +|++
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~ 310 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQ 310 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999998888886 5664
No 364
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.15 E-value=0.074 Score=43.85 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
-++|.|||+|.-|..-|..++.+|++|+++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~ 342 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMK 342 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEE
Confidence 368999999999999999999999999975
No 365
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.15 E-value=0.099 Score=38.04 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~ 89 (89)
.++++|+|+|-+|.+.+..|++.| .+|+|+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~ 153 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIV 153 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEE
Confidence 478999999999999999999999 578774
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.13 E-value=0.087 Score=42.76 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++|+|||+|..|+.+|..+.+.|. +|+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv 353 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTIL 353 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence 4799999999999999999999997 58764
No 367
>PRK07846 mycothione reductase; Reviewed
Probab=94.12 E-value=0.045 Score=42.28 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.9
Q ss_pred ceEEEECCCHHHHHHHHHH
Q 046976 61 LKVAIIGAGLAGMSTAVEL 79 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L 79 (89)
+|++|||+||+|..+|..+
T Consensus 2 yD~vVIG~G~~g~~aa~~~ 20 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF 20 (451)
T ss_pred CCEEEECCCHHHHHHHHHH
Confidence 7999999999999888754
No 368
>PRK08017 oxidoreductase; Provisional
Probab=94.07 E-value=0.1 Score=36.18 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=25.4
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
+.++|.|+ |..|...|..|+++|++|++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~ 31 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLA 31 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 47999998 99999999999999998875
No 369
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.05 E-value=0.06 Score=41.81 Aligned_cols=28 Identities=39% Similarity=0.807 Sum_probs=25.1
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
-|+|||+|.|||+|+..+..+|-.|+++
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~ll 38 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILL 38 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEE
Confidence 5899999999999999999998777764
No 370
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.04 E-value=0.1 Score=36.88 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|+|+|-.|...|..|++.|. ++++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~l 50 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGL 50 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999999998 5544
No 371
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.03 E-value=0.1 Score=37.61 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|+|+|-.|..+|..|++.|. ++++
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~l 53 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTL 53 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999999997 4443
No 372
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.99 E-value=0.1 Score=39.47 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=26.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|-.|...|.+|++.|. ++++
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~l 53 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTI 53 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999999998 6665
No 373
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.95 E-value=0.14 Score=33.22 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=25.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC-CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG-HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G-~~V~v~ 89 (89)
.++++|+|+|..|...+..|.+.| ++|+++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~ 49 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIV 49 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 369999999999999999999986 677763
No 374
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.95 E-value=0.081 Score=40.41 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=26.1
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.+|+|||-|..|+++|..|.++|++|++
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g 31 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIG 31 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999999998875
No 375
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.95 E-value=0.12 Score=36.76 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=28.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+++|+|||||-.|.-=|..|.+.|-+|+|+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vv 41 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVV 41 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999999999985
No 376
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.91 E-value=0.1 Score=40.20 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=26.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
..+|+|+|+|..|..++..|...|. +|+++
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~ 212 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVA 212 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEE
Confidence 4799999999999999999999997 67653
No 377
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.1 Score=39.00 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||+|-+.+..|++|++-+.+|+++
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv 172 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLV 172 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEE
Confidence 369999999999999999999999999875
No 378
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.88 E-value=0.12 Score=36.58 Aligned_cols=29 Identities=45% Similarity=0.500 Sum_probs=25.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v 88 (89)
..+|+|||+|-.|...|..|++.|.. +++
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~l 57 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKL 57 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEE
Confidence 47999999999999999999999984 554
No 379
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.88 E-value=0.14 Score=35.53 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=25.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|||.|--|.+-|.-|.+.|++|+|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~V 32 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIV 32 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEE
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 47999999999999999999999999986
No 380
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.86 E-value=0.1 Score=37.75 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=26.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||.|..|...|..|++.|++|+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~ 31 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVY 31 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEE
Confidence 47999999999999999999999998864
No 381
>PRK08328 hypothetical protein; Provisional
Probab=93.85 E-value=0.12 Score=36.94 Aligned_cols=29 Identities=41% Similarity=0.540 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|+|+|-.|...|..|++.|. ++++
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~l 56 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILL 56 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 4699999999999999999999997 4544
No 382
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.84 E-value=0.12 Score=37.94 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=26.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++++|+|+|-++.++++.|++.|. +++|+
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEE
Confidence 4789999999999999999999997 57764
No 383
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.83 E-value=0.12 Score=36.76 Aligned_cols=30 Identities=37% Similarity=0.648 Sum_probs=26.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc---eEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE---VLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~---V~v~ 89 (89)
..+++|+|+|-+|...|..|.+.|.+ ++++
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~iv 57 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVV 57 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEE
Confidence 36999999999999999999999975 6653
No 384
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.76 E-value=0.13 Score=38.40 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=24.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
+.+|+|||+|..|...|+.|+..|+ ++.+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L 34 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVL 34 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEE
Confidence 4799999999999999999999984 5443
No 385
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.75 E-value=0.22 Score=34.96 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=26.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|+|+ |-.|...+..|.++|++|+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 479999996 99999999999999999875
No 386
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.74 E-value=0.14 Score=38.29 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=23.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH 84 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~ 84 (89)
..+|+|||+|..|.+.|+.|+..|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~ 27 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL 27 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC
Confidence 3699999999999999999999887
No 387
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.66 E-value=0.13 Score=38.08 Aligned_cols=29 Identities=38% Similarity=0.656 Sum_probs=23.9
Q ss_pred ceEEEECCCHHHHHHHHHHHH----CC--CceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLD----HG--HEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~----~G--~~V~v~ 89 (89)
++++|||+|++|+..|..|++ +| .+|+++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 589999999999999999985 35 367764
No 388
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=93.63 E-value=0.063 Score=41.98 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=25.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHC----CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH----GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~----G~~V~v~ 89 (89)
..+|+|||+|-.|.+.|+-|.++ |++|+|+
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVV 119 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVV 119 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEE
Confidence 47999999999999999988774 6788774
No 389
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.58 E-value=0.12 Score=37.88 Aligned_cols=28 Identities=36% Similarity=0.644 Sum_probs=26.3
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 62 KVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+|.|||.|.-|...|..|+++|++|++|
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~ 30 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVF 30 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEE
Confidence 7999999999999999999999999875
No 390
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.58 E-value=0.11 Score=42.99 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=27.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
-++|.|||+|.-|..-|..++..|++|+++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~ 364 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEe
Confidence 368999999999999999999999999975
No 391
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.54 E-value=0.15 Score=37.49 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
..+|+|+|+|..|+.++..+...|.+|++
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~ 201 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYV 201 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 46999999999999999999999988765
No 392
>PLN02494 adenosylhomocysteinase
Probab=93.53 E-value=0.13 Score=40.87 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|.|+.|...|..+...|.+|+++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~ 283 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVT 283 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999998874
No 393
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.49 E-value=0.14 Score=40.28 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=27.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|.|-+|..+|..|.+.|.+|+.
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVa 256 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVT 256 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 58999999999999999999999999986
No 394
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.47 E-value=0.11 Score=42.76 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~ 89 (89)
-++|.|||+|.-|..-|..++ ..|++|+++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~ 339 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIK 339 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999888 889999975
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.46 E-value=0.15 Score=38.75 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+++|+|+|..|...+..|.+.|++|+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vi 260 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLI 260 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 478999999999999999999999999875
No 396
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.44 E-value=0.15 Score=36.93 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=27.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+++|+|+|+.+...|..+...|++|+|+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~ 129 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWV 129 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEE
Confidence 69999999999999999999999999984
No 397
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.44 E-value=0.07 Score=42.18 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.3
Q ss_pred CceEEEECCCHHHHHHHHHHHH
Q 046976 60 KLKVAIIGAGLAGMSTAVELLD 81 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~ 81 (89)
.+||+|+||||+|++.|..|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~s 57 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGS 57 (481)
T ss_pred cCCEEEECCchHHHHHHHHhcc
Confidence 5899999999999888887763
No 398
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.41 E-value=0.18 Score=34.36 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|.|||.|..|...|..|...|.+|+.+
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~ 65 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGY 65 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEe
Confidence 589999999999999999999999999875
No 399
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=93.37 E-value=0.016 Score=42.73 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=23.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC--CceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG--HEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G--~~V~v 88 (89)
-||+|||+|.+||+||++.+++. .+|.|
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaI 106 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAI 106 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEE
Confidence 59999999999999999998764 35544
No 400
>PRK13984 putative oxidoreductase; Provisional
Probab=93.34 E-value=0.12 Score=41.17 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH 84 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~ 84 (89)
.++|+|||+|..|+-+|..|++.|.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~ 442 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQK 442 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccc
Confidence 3799999999999999999998753
No 401
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.079 Score=41.54 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=24.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|||+|-+|..||..|+--=-+|+++
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtll 383 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL 383 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeee
Confidence 589999999999999999998433367664
No 402
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.32 E-value=0.16 Score=36.89 Aligned_cols=29 Identities=24% Similarity=0.109 Sum_probs=24.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
..+++|+|+|+.|+.++..+...|.++++
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~ 173 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPA 173 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEE
Confidence 35899999999999999988889987543
No 403
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.31 E-value=0.15 Score=38.24 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.8
Q ss_pred eEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 62 KVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 62 ~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
+|+|+|+||.||.++..+...|...+|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi 197 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVI 197 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEE
Confidence 799999999999998888888874443
No 404
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.30 E-value=0.17 Score=37.33 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=26.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++++|+|+|-++.++++.|++.|. +++|+
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 3789999999999999999999997 56553
No 405
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.29 E-value=0.15 Score=37.74 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=24.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|..|..++..|.++|. +|++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v 207 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITI 207 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999998774 6665
No 406
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.19 Score=35.06 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+ |..|...+..|+++|++|+++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 378999998 778999999999999998763
No 407
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.26 E-value=0.19 Score=35.72 Aligned_cols=29 Identities=38% Similarity=0.509 Sum_probs=26.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|-|-.|..+|..|.++|.+|+.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~ 51 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLA 51 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 47999999999999999999999986653
No 408
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=93.23 E-value=0.14 Score=42.16 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=26.5
Q ss_pred CceEEEECCCHHHHHHHHHHH-HCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELL-DHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~-~~G~~V~v~ 89 (89)
-++|.|||+|.-|..-|..++ +.|++|+++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~ 334 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIK 334 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999998888 589999975
No 409
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.23 E-value=0.18 Score=37.38 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.1
Q ss_pred CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|.|- +|...|..|.++|..|+++
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~ 189 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTIC 189 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEE
Confidence 57999999997 9999999999999988874
No 410
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.22 E-value=0.17 Score=36.36 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=26.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|+ |..|...+..|.++|++|++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~ 33 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKA 33 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEE
Confidence 378999995 99999999999999999875
No 411
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.20 E-value=0.2 Score=34.90 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++++|.|+ |-.|...|..|+++|++|.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~ 39 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVIL 39 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEE
Confidence 378999987 77899999999999999876
No 412
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=93.14 E-value=0.19 Score=37.70 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|+|..|...+..+.+.|++|.++
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~ 41 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAV 41 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 469999999999998898899999988763
No 413
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.09 E-value=0.11 Score=39.07 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=22.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC--ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH--EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~--~V~v 88 (89)
.++|+|||||.++...+..|.+++. +|+.
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~ 220 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTW 220 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEE
Confidence 4899999999999999999999875 5554
No 414
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.08 E-value=0.16 Score=38.64 Aligned_cols=29 Identities=48% Similarity=0.649 Sum_probs=26.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|.|+|+|--|-+.|..|++.|++|+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw 30 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLW 30 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEE
Confidence 58999999999999999999999999874
No 415
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.07 E-value=0.22 Score=34.20 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.7
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|+|+ |..|...|..|+++|++|++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~ 34 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLAL 34 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 368999998 88999999999999998875
No 416
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.07 E-value=0.15 Score=38.82 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=27.3
Q ss_pred CceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|.||| .|.-|-..|..|.++|++|+++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~ 128 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRIL 128 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEe
Confidence 37899999 8999999999999999999875
No 417
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.01 E-value=0.15 Score=37.34 Aligned_cols=29 Identities=38% Similarity=0.458 Sum_probs=25.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC--ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH--EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~--~V~v~ 89 (89)
.+|.|||.|..|.+.|..|.+.|+ +|+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~ 37 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGA 37 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE
Confidence 689999999999999999999995 66653
No 418
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=93.00 E-value=0.17 Score=36.30 Aligned_cols=28 Identities=43% Similarity=0.732 Sum_probs=26.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
+++.|+|.|-.|...|..+++.||+|+|
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~i 29 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVII 29 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEE
Confidence 5789999999999999999999999986
No 419
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.99 E-value=0.22 Score=34.33 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++++|.|+ |-.|...|..|+++|++|++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~ 34 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVG 34 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 378999997 56899999999999999875
No 420
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.97 E-value=0.18 Score=40.09 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|.|..|...|..|...|.+|+++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~ 283 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVT 283 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 589999999999999999999999998874
No 421
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.97 E-value=0.12 Score=42.78 Aligned_cols=29 Identities=45% Similarity=0.408 Sum_probs=26.7
Q ss_pred ceEEEECCCHHHHHH-HHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMST-AVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~a-A~~L~~~G~~V~v~ 89 (89)
+++.|+|-|-+|+++ |..|.++|++|++.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~s 34 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGS 34 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEE
Confidence 479999999999999 99999999999863
No 422
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.95 E-value=0.17 Score=38.05 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=27.8
Q ss_pred CceEEEECCC-HHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAG-LAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G-~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||.| ..|...|..|.++|+.|+++
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~ 189 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVV 189 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 5899999996 89999999999999999875
No 423
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.93 E-value=0.19 Score=38.49 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=25.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|..|..+|..|++.|. ++++
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~i 70 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITL 70 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999999997 5554
No 424
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.92 E-value=0.22 Score=34.20 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.5
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|+|+ |..|...+..|+++|++|+++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~ 35 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVT 35 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 68999987 778999999999999998763
No 425
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.23 Score=34.01 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=26.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|.|+ |-.|...+..|+++|++|+++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~ 39 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAA 39 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEE
Confidence 368999998 789999999999999998763
No 426
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=92.85 E-value=0.2 Score=39.24 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=25.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++|+|||+|..|+-+|..+.+.|- +|+++
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv 313 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQF 313 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999888888875 67764
No 427
>PLN02712 arogenate dehydrogenase
Probab=92.85 E-value=0.43 Score=39.22 Aligned_cols=30 Identities=47% Similarity=0.612 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+++|.|||.|..|-..|..|.++|++|+++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999988764
No 428
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.84 E-value=0.21 Score=38.27 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=26.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC-------CceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG-------HEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G-------~~V~v~ 89 (89)
+.+|.|||+|.-|.+.|..|+++| ++|.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw 47 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMW 47 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEE
Confidence 379999999999999999999998 677763
No 429
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.82 E-value=0.22 Score=36.53 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
++++|+|+|-++.++++.|++.|. +++|+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~ 152 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIV 152 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999999999997 47764
No 430
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.80 E-value=0.21 Score=37.51 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|.|||.|..|...|..|...|++|..|
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~ 175 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAY 175 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 478999999999999999999999999864
No 431
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.79 E-value=0.087 Score=39.68 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=20.4
Q ss_pred ceEEEECCCHHHHHHHHHHHHCC-CceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHG-HEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G-~~V~v 88 (89)
+|++.||.||++|+.|..|.+.+ .++..
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f 31 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALF 31 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEE
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEE
Confidence 69999999999999999998876 44443
No 432
>PLN02240 UDP-glucose 4-epimerase
Probab=92.75 E-value=0.22 Score=36.24 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=26.1
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|.|+ |..|...+..|.++|++|+++
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~ 35 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVI 35 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 68999987 999999999999999998764
No 433
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.23 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.4
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.++|+|+ |..|...+.+|+++|++|+++
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 68999986 889999999999999998764
No 434
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.72 E-value=0.21 Score=37.41 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=27.8
Q ss_pred CceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIG-AGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+||| +|..|...|..|.++|+.|+++
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~ 188 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIA 188 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence 58999999 8999999999999999999874
No 435
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.26 Score=33.93 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.8
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|.|+ |-.|...+..|+++|++|+++
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 68999988 889999999999999998763
No 436
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.69 E-value=0.21 Score=34.81 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|+|+|..|...|..|++.|. ++++
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~l 50 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTI 50 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEE
Confidence 3799999999999999999999998 4554
No 437
>PRK08223 hypothetical protein; Validated
Probab=92.66 E-value=0.2 Score=37.41 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|-.|..+|.+|++.|. ++++
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~l 56 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTI 56 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEE
Confidence 4799999999999999999999998 4443
No 438
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.65 E-value=0.21 Score=38.88 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++++|||+|..|+.+|..+.+.|. +|+|+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv 312 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCA 312 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence 4799999999999999999999995 68874
No 439
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.64 E-value=0.24 Score=36.46 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=26.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|.|+ |..|...+..|.++|++|+++
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~ 34 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGY 34 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEE
Confidence 68999996 999999999999999998753
No 440
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.62 E-value=0.23 Score=37.09 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=27.5
Q ss_pred CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|||.|. .|...|..|.++|..|+++
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~ 188 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTIL 188 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEE
Confidence 58999999988 9999999999999999874
No 441
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.57 E-value=0.24 Score=38.70 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=27.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||||.++.-=+..|.+.|.+|+|+
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~vi 41 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVN 41 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 489999999999999999999999999885
No 442
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.55 E-value=0.23 Score=37.23 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.0
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.+|.|+|+|.-|.+.|..|++.| .|++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l 34 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQ 34 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEE
Confidence 68999999999999999999998 5544
No 443
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.52 E-value=0.24 Score=37.56 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|-.|..+|..|++.|. ++++
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~l 57 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITI 57 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999999998 4444
No 444
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.50 E-value=0.25 Score=36.54 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.3
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|.|+ |..|...+.+|.++|++|+.+
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~ 45 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGL 45 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 79999997 999999999999999998753
No 445
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.49 E-value=0.24 Score=35.61 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|+|.|-.|..+|..|++.|. ++++
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~L 40 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTL 40 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 3699999999999999999999998 5544
No 446
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.40 E-value=0.18 Score=37.91 Aligned_cols=29 Identities=41% Similarity=0.543 Sum_probs=26.3
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||+|.-|-.-|..++..||+|+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~ 32 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLK 32 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEE
Confidence 69999999999999999999988999875
No 447
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.40 E-value=0.22 Score=39.81 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=26.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|||+|.+|.-.|..|++...+|++
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~ 211 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYL 211 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEE
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEE
Confidence 58999999999999999999998888876
No 448
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.39 E-value=0.24 Score=40.05 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=26.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++|+|||+|..|+-+|..+.+.|. +|+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i 498 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCA 498 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEe
Confidence 4799999999999999999999996 67763
No 449
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.32 E-value=0.36 Score=35.56 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=26.2
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|+ |..|...+.+|.++|++|++
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 479999995 89999999999999999875
No 450
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.30 E-value=0.29 Score=36.14 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.8
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++++|+|+|-++.+.++.|++.|. +++|+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~ 154 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLF 154 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 3689999999999999999999997 67664
No 451
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=92.26 E-value=0.29 Score=36.37 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=26.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v~ 89 (89)
.++++|+|+|=++.++++.|++.|. +++|+
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~ 156 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVV 156 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 4789999999999999999999995 68774
No 452
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.28 Score=34.29 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.4
Q ss_pred CceEEEECC-C-HHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-G-LAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G-~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|.|+ | -.|...+..|+++|++|++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~ 47 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVI 47 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEE
Confidence 478999997 5 5899999999999999876
No 453
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.23 E-value=0.29 Score=35.78 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=26.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|+ |..|...+..|.++|++|++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~ 35 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHG 35 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 378999997 89999999999999999875
No 454
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.13 E-value=0.28 Score=34.17 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=25.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|-.|...|..|++.|. ++++
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~l 48 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITI 48 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 3799999999999999999999998 4554
No 455
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.12 E-value=0.051 Score=44.28 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=27.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..||+|||||.+|.-+|+..+-+|.+|-++
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLV 96 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALV 96 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEE
Confidence 489999999999999999999999998753
No 456
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.11 E-value=0.26 Score=37.45 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|+|+|-.|..+|..|++.|. ++++
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~l 164 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGI 164 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999999998 5554
No 457
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.06 E-value=0.34 Score=33.53 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.3
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|.|+ |..|...|..|+++|++|++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~ 44 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVAL 44 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 368999986 77899999999999999875
No 458
>PLN02778 3,5-epimerase/4-reductase
Probab=92.05 E-value=0.46 Score=34.64 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=26.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|+ |..|...+..|.++|++|++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 479999986 99999999999999999864
No 459
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=92.03 E-value=0.2 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=25.5
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|+|+|.|+...-+...+.+.|++++++
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v 31 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAV 31 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceec
Confidence 69999999999999999999999987753
No 460
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.02 E-value=0.37 Score=34.44 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=25.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v 88 (89)
..+|+|+|+|+.|+.++..+..+|.+ |++
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~ 150 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVA 150 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 46899999999999999999999986 654
No 461
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.00 E-value=0.27 Score=39.06 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=27.5
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.+++|+|.|+.|...|..|.++|++|+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvI 446 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVI 446 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999999999874
No 462
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.35 Score=33.27 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.3
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.++|.|+ |-.|...+..|+++|++|+++
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~ 36 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALV 36 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 67888886 778999999999999998763
No 463
>PLN02214 cinnamoyl-CoA reductase
Probab=91.98 E-value=0.32 Score=35.95 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=26.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|.|+ |..|...+..|.++|++|+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~ 39 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKG 39 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence 368999998 99999999999999999875
No 464
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.98 E-value=0.32 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHCC
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHG 83 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G 83 (89)
..+|+|||+|-.|...+..|++.|
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHcc
Confidence 479999999999999999999975
No 465
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.95 E-value=0.38 Score=33.32 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|.|+ |-.|...+..|+++|++|++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~ 36 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAI 36 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 368999988 78899999999999999875
No 466
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=91.95 E-value=0.17 Score=41.52 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=26.1
Q ss_pred CceEEEECCCHHHHHHHHHHHHC-CCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDH-GHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~-G~~V~v~ 89 (89)
.+|.+|||||-||...|..|++. ..+|+++
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLL 87 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLL 87 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEE
Confidence 58999999999999999999986 4677764
No 467
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.91 E-value=0.34 Score=32.82 Aligned_cols=30 Identities=43% Similarity=0.430 Sum_probs=25.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+.++|.|+ |..|...+..|+++|++|+++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence 368999987 778999999999999998753
No 468
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.91 E-value=0.16 Score=39.86 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=25.9
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceE
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVL 87 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~ 87 (89)
.+|.|||-|..||..|..++++|++|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~Vi 36 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVI 36 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceE
Confidence 799999999999999999999999986
No 469
>PRK06849 hypothetical protein; Provisional
Probab=91.90 E-value=0.3 Score=36.81 Aligned_cols=30 Identities=37% Similarity=0.437 Sum_probs=26.9
Q ss_pred CceEEEECCCH-HHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGL-AGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~-aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|.|++. .|+..|..|.+.|++|+++
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~ 34 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILA 34 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 47999999997 7999999999999999874
No 470
>PLN02583 cinnamoyl-CoA reductase
Probab=91.88 E-value=0.35 Score=34.95 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=25.7
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.+.|+|.|+ |..|...+..|.++|++|++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~ 35 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHA 35 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 368999986 88999999999999999875
No 471
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=91.85 E-value=0.23 Score=39.01 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=23.2
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+||+|+|.|..-...|..|++.|++|+.+
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhi 33 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHI 33 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEec
Confidence 489999999999988888999999999864
No 472
>PLN02256 arogenate dehydrogenase
Probab=91.81 E-value=0.36 Score=35.93 Aligned_cols=30 Identities=40% Similarity=0.583 Sum_probs=26.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|.|||.|..|-..|..|.+.|++|+++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~ 65 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLAT 65 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999888764
No 473
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.79 E-value=0.15 Score=39.18 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=27.7
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..+|+|+|+|.+|..+|..+.-.|-+|+|+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtil 197 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTIL 197 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEE
Confidence 469999999999999999999999999985
No 474
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.78 E-value=0.22 Score=39.30 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=27.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+|.|||.|.-|...|..|+++|++|++|
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~ 30 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVY 30 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEE
Confidence 47999999999999999999999999886
No 475
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=91.78 E-value=0.22 Score=38.65 Aligned_cols=28 Identities=39% Similarity=0.609 Sum_probs=25.2
Q ss_pred ceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++|.|||-|..|+..|..|++ |++|++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~ 34 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGF 34 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEE
Confidence 689999999999999999887 6999875
No 476
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.71 E-value=0.39 Score=33.77 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=26.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|.|+ |..|...+..|+++|++|+++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~ 37 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIV 37 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 378999997 789999999999999998753
No 477
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.67 E-value=0.36 Score=34.27 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=25.0
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
+.++|.|+ |-.|...|..|+++|++|++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~ 33 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFA 33 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 57899988 77899999999999999876
No 478
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=91.67 E-value=0.22 Score=38.12 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=26.0
Q ss_pred ceEEEEC-CCHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIG-AGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG-~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
..|+|.| +|..|..+++.|.++||.|+++
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy~v~~v 32 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGYGVVIV 32 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCCcEEEE
Confidence 5788885 5999999999999999999875
No 479
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.66 E-value=0.3 Score=37.28 Aligned_cols=30 Identities=40% Similarity=0.486 Sum_probs=27.9
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|.|||-|..|...|..|...|++|+++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 479999999999999999999999999874
No 480
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.65 E-value=0.36 Score=36.70 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=26.7
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|+|+ |..|...+..|.++|++|+++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l 90 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAV 90 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 468999987 999999999999999998764
No 481
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.63 E-value=0.42 Score=32.78 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=25.7
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+.++|.|+ |..|...|..|.++|++|+++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 368999987 788999999999999998753
No 482
>PRK07577 short chain dehydrogenase; Provisional
Probab=91.62 E-value=0.4 Score=32.70 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.1
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.++|.|+ |..|...|..|+++|++|+++
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~ 33 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGI 33 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEE
Confidence 57899987 778999999999999998763
No 483
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.61 E-value=0.32 Score=37.28 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCC-ceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGH-EVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~-~V~v 88 (89)
..+|+|||+|-.|..+|..|++.|. ++++
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~l 71 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGI 71 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999999998 5544
No 484
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.60 E-value=0.42 Score=33.04 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|.|+ |-.|...+..|+++|++|++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~ 38 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVL 38 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 378999987 77899999999999998875
No 485
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=91.60 E-value=0.34 Score=38.11 Aligned_cols=30 Identities=40% Similarity=0.544 Sum_probs=27.0
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+|-+|.+.+..|++.|++|+++
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~ 361 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIF 361 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999988763
No 486
>PLN02206 UDP-glucuronate decarboxylase
Probab=91.60 E-value=0.34 Score=37.64 Aligned_cols=30 Identities=27% Similarity=0.602 Sum_probs=27.0
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|.|+ |..|...+..|.++|++|+++
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~l 149 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGDSVIVV 149 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcCEEEEE
Confidence 479999996 999999999999999998763
No 487
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.58 E-value=0.41 Score=33.51 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=25.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
+.++|.|+ |..|...+..|+++|++|+++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLV 35 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 67899986 778999999999999998763
No 488
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.56 E-value=0.35 Score=33.10 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.2
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|.|+ |..|...+..|.++|++|+++
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~ 36 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVV 36 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 68999985 788999999999999998763
No 489
>PRK12742 oxidoreductase; Provisional
Probab=91.53 E-value=0.42 Score=32.65 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.1
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|.|+ |..|...|..|+++|++|++
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 368999986 77899999999999998865
No 490
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.52 E-value=0.4 Score=33.24 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.6
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++++|+|+ |..|...+..|+++|++|+++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 378999987 667999999999999998763
No 491
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.51 E-value=0.37 Score=34.45 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.1
Q ss_pred CceEEEECCC---HHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAG---LAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G---~aGl~aA~~L~~~G~~V~v 88 (89)
.+.++|.|++ -.|.+.|..|+++|++|++
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~ 38 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAF 38 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEE
Confidence 3678888987 4799999999999999876
No 492
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.44 E-value=0.34 Score=41.23 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=25.4
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v 88 (89)
.++|+|||+|+.|+..|..|++.|.+ |+|
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~v 346 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAI 346 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence 47999999999999999999999964 554
No 493
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.42 E-value=0.44 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.3
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|.|+ |..|...+..|+++|++|+++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~ 35 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIY 35 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 68999986 789999999999999998653
No 494
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=91.41 E-value=0.33 Score=41.56 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=25.6
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCc-eEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHE-VLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~-V~v 88 (89)
.++|+|||+|..|+-+|..+.+.|.+ |++
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vti 600 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRC 600 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999999985 554
No 495
>PRK12827 short chain dehydrogenase; Provisional
Probab=91.41 E-value=0.46 Score=32.46 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.6
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEE
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v 88 (89)
++++|+|+ |..|...|..|+++|++|++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIV 35 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 68999986 66899999999999999876
No 496
>PLN02572 UDP-sulfoquinovose synthase
Probab=91.38 E-value=0.63 Score=36.02 Aligned_cols=30 Identities=43% Similarity=0.680 Sum_probs=26.9
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|.|| |-.|...+..|+++|++|+++
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 478999987 999999999999999999863
No 497
>PRK05717 oxidoreductase; Validated
Probab=91.38 E-value=0.55 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=25.7
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.+.++|.|+ |-.|...|..|+++|++|+++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 368999987 678999999999999998763
No 498
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.37 E-value=0.29 Score=37.29 Aligned_cols=29 Identities=45% Similarity=0.631 Sum_probs=27.3
Q ss_pred CceEEEECCCHHHHHHHHHHHHCCCceEE
Q 046976 60 KLKVAIIGAGLAGMSTAVELLDHGHEVLL 88 (89)
Q Consensus 60 ~~~v~IvG~G~aGl~aA~~L~~~G~~V~v 88 (89)
.++|+|||.|.-|.+-|+-|++.|.+|+|
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnVii 46 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVII 46 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEE
Confidence 47999999999999999999999999876
No 499
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.36 E-value=0.41 Score=33.12 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=25.1
Q ss_pred ceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 61 LKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 61 ~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
++++|.|+ |..|...|..|+++|++|+++
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~ 35 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLA 35 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 68999987 567999999999999998763
No 500
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.31 E-value=0.27 Score=36.64 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.8
Q ss_pred CceEEEECC-CHHHHHHHHHHHHCCCceEEc
Q 046976 60 KLKVAIIGA-GLAGMSTAVELLDHGHEVLLI 89 (89)
Q Consensus 60 ~~~v~IvG~-G~aGl~aA~~L~~~G~~V~v~ 89 (89)
.++|+|||. |..|...|..|.++|+.|+++
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~ 188 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLT 188 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEEEE
Confidence 589999999 999999999999999999874
Done!