BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046982
         (175 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 27/145 (18%)

Query: 52  HWHDI----QSGQNPTPISVVRPPTNTST-----NGFGIINMIDNPLTAGPEMSSKMVGR 102
           ++HDI    ++  N T   V  P   + T     + FG I + D+P+T    +SSK VGR
Sbjct: 37  YFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVGR 96

Query: 103 AQGFYALASQEEVGLLMAMNFAFIEGKYNGKM------PVIE---------GNGLFRFAR 147
           AQGFY   ++      ++  F      + G +      P++          G G F   R
Sbjct: 97  AQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHR 156

Query: 148 GYVQARTHNFDPKTGDATVQYNVYV 172
           G     T  F+   G+A  +  VY+
Sbjct: 157 GIATITTDAFE---GEAYFRLGVYI 178


>sp|P04823|IL3_RAT Interleukin-3 OS=Rattus norvegicus GN=Il3 PE=2 SV=1
          Length = 166

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 7/44 (15%)

Query: 35  NKNLMGLKKEKLTHFQIHWHDIQSGQNPTPISVVRPPTNTSTNG 78
           NK+L   KK KL  + IH  D+Q      P+SV RPP  TS++ 
Sbjct: 121 NKDLDDFKK-KLRFYVIHLKDLQ------PVSVSRPPQPTSSSD 157


>sp|Q02773|RPM2_YEAST Ribonuclease P protein component, mitochondrial OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPM2 PE=1
           SV=1
          Length = 1202

 Score = 29.6 bits (65), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 7/56 (12%)

Query: 2   VKFLPIFATQIIFLLFLLSSF-----TKIQVHGYAKTMNKNLMGLKKEKLTHFQIH 52
           + ++P F+ +  +L+F+ +SF     TK +++ Y   M +NL  LKK+KL+ + +H
Sbjct: 470 LNWIPEFSYEF-YLVFMANSFQDWNLTK-KIYDYIFPMERNLSPLKKQKLSDYLLH 523


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,277,094
Number of Sequences: 539616
Number of extensions: 2714664
Number of successful extensions: 5189
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5188
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)