Query 046982
Match_columns 175
No_of_seqs 130 out of 534
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 1.4E-47 3.1E-52 302.0 17.5 128 45-174 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 96.9 0.02 4.3E-07 46.5 11.3 108 43-157 4-127 (176)
3 PLN02343 allene oxide cyclase 95.6 0.67 1.5E-05 39.1 13.5 111 41-157 52-178 (229)
4 PF11528 DUF3224: Protein of u 70.3 50 0.0011 25.8 8.9 36 133-173 95-132 (134)
5 COG2372 CopC Uncharacterized p 42.8 1.1E+02 0.0024 23.9 6.4 71 1-72 1-71 (127)
6 PTZ00312 inositol-1,4,5-tripho 33.9 94 0.002 28.2 5.2 53 82-174 38-91 (356)
7 PF06347 SH3_4: Bacterial SH3 19.8 71 0.0015 20.3 1.4 17 88-104 6-22 (55)
8 PF08239 SH3_3: Bacterial SH3 19.6 86 0.0019 19.5 1.8 16 88-103 4-19 (55)
9 PF07172 GRP: Glycine rich pro 16.0 1.2E+02 0.0027 22.2 2.2 8 1-9 1-8 (95)
10 PF01715 IPPT: IPP transferase 13.9 60 0.0013 27.6 -0.0 12 133-144 57-69 (253)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=1.4e-47 Score=301.96 Aligned_cols=128 Identities=47% Similarity=0.848 Sum_probs=120.0
Q ss_pred CeeEEEEEeeecCCCCCCceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEecCCcceEEEEEEEE
Q 046982 45 KLTHFQIHWHDIQSGQNPTPISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQEEVGLLMAMNFA 124 (175)
Q Consensus 45 ~~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~v 124 (175)
|++||+|||||+++|||+|++.|+.++.+ ...+||+++|+|||||+||+++||+||||||+|+.+++++.+|+++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~-~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~v 79 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGP-SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLV 79 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCC-CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEE
Confidence 68999999999999999999999988764 33389999999999999999999999999999999999999999999999
Q ss_pred EccCccCC----------------eeeEEeccceeeeeEeEEEEEEEeeCCCCCCeEEEEEEEEEe
Q 046982 125 FIEGKYNG----------------KMPVIEGNGLFRFARGYVQARTHNFDPKTGDATVQYNVYVMH 174 (175)
Q Consensus 125 F~~g~~~G----------------E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~el~V~v~h 174 (175)
|++++||| |||||||||+||||||||+++++ .+.+++++|+|||||++|
T Consensus 80 F~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 80 FEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 99999999 99999999999999999999999 333567899999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=96.94 E-value=0.02 Score=46.48 Aligned_cols=108 Identities=22% Similarity=0.346 Sum_probs=65.1
Q ss_pred CCCeeEEEEE-eeecCCCCCCceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEecC----CcceE
Q 046982 43 KEKLTHFQIH-WHDIQSGQNPTPISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQ----EEVGL 117 (175)
Q Consensus 43 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~----~~~~~ 117 (175)
+.|...|++| +.+.-.|. |.-+++-+ .+....|..+=|.|+|++|.- -+-+|--+|+-+.-.. .+..+
T Consensus 4 p~kvqel~vyeiNErdR~S-Pa~L~ls~----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry 76 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRGS-PAYLRLSQ----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY 76 (176)
T ss_dssp ----EEEEEEEE--S-S---S--B--SS----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred ccceEEEEEEEEcccccCC-CcEEEccc----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence 4567788888 55543322 33333321 233568999999999999976 6789999999665432 33344
Q ss_pred EEEEEEEEcc-C--ccCC--------eeeEEeccceeeeeEeEEEEEEEee
Q 046982 118 LMAMNFAFIE-G--KYNG--------KMPVIEGNGLFRFARGYVQARTHNF 157 (175)
Q Consensus 118 ~~~~~~vF~~-g--~~~G--------E~aVVGGTG~Fr~ArGya~~~t~~~ 157 (175)
=-.+++.|-+ | ...| -++|.||||-|+.|+|-++++.+-+
T Consensus 77 EaiySfyfGdyGhISvqGpy~t~eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 77 EAIYSFYFGDYGHISVQGPYLTYEDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEE-GGGEEEEEEEEEETTS-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEEecccceEEEecccccccceeEEEeccCceeecceEEEEEEEeec
Confidence 4566667744 3 2334 7999999999999999999988765
No 3
>PLN02343 allene oxide cyclase
Probab=95.55 E-value=0.67 Score=39.11 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=74.9
Q ss_pred ccCCCeeEEEEE-eeecCCCCCCceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEecC----Ccc
Q 046982 41 LKKEKLTHFQIH-WHDIQSGQNPTPISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQ----EEV 115 (175)
Q Consensus 41 ~~~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~----~~~ 115 (175)
.++.|...|.+| +.|.-.+. |.-.+.-+.+ .....|+.+=|.|.|++|.- -|-+|--.|+-+.-.. .+.
T Consensus 52 ~~p~kvQel~VYEiNErDR~S-Pa~L~ls~k~---~~~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gD 125 (229)
T PLN02343 52 PRPTKVQELSVYEINERDRGS-PAFLKLSKKS---VENALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGD 125 (229)
T ss_pred CCCceeEEEEEEEeccccCCC-cceEEcccCc---ccccccceeccccccccchh--hhhhcccceeEEEEEeccccCCc
Confidence 345677788888 44433222 2223322221 22568999999999999854 5678888888664432 344
Q ss_pred eEEEEEEEEEcc-Cc--cCC--------eeeEEeccceeeeeEeEEEEEEEee
Q 046982 116 GLLMAMNFAFIE-GK--YNG--------KMPVIEGNGLFRFARGYVQARTHNF 157 (175)
Q Consensus 116 ~~~~~~~~vF~~-g~--~~G--------E~aVVGGTG~Fr~ArGya~~~t~~~ 157 (175)
.+=..+++.|-| |. -.| -++|.||+|-|+.|+|-+++..+-+
T Consensus 126 ryEa~ySfyfGDyGHisvqGpyltyeDt~LaiTGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 126 RYEAIYSFYFGDYGHISVQGPYLTYEDTYLAITGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred eeEEEEEEEecCcceeEEeccccccccceEEeecCcceeecceeEEEEeeeee
Confidence 566777788854 22 234 8999999999999999999988765
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=70.26 E-value=50 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=25.1
Q ss_pred eeeEE--eccceeeeeEeEEEEEEEeeCCCCCCeEEEEEEEEE
Q 046982 133 KMPVI--EGNGLFRFARGYVQARTHNFDPKTGDATVQYNVYVM 173 (175)
Q Consensus 133 E~aVV--GGTG~Fr~ArGya~~~t~~~~~~~~~~v~el~V~v~ 173 (175)
+|-|| -|||++...+|-..++... . ...++|+..+-
T Consensus 95 ~~~VVPgSGTGeL~Gl~Gsg~~~~~~-g----~h~y~f~y~l~ 132 (134)
T PF11528_consen 95 SFTVVPGSGTGELAGLSGSGTITIDE-G----QHAYDFEYTLP 132 (134)
T ss_dssp EEEE-TT--EETTTTEEEEEEEEEET-T----CEEEEEEEEEE
T ss_pred EEEEeCCCCchhhcCCEEEEEEEECC-C----CceeeEEEECC
Confidence 89999 9999999999999876655 2 33667766553
No 5
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=42.84 E-value=1.1e+02 Score=23.95 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=40.4
Q ss_pred CccchhhHHHHHHHHHHhhhhhccccccceeeeccccccCccCCCeeEEEEEeeecCCCCCCceEEEecCCC
Q 046982 1 MVKFLPIFATQIIFLLFLLSSFTKIQVHGYAKTMNKNLMGLKKEKLTHFQIHWHDIQSGQNPTPISVVRPPT 72 (175)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~t~l~fY~Hd~~sg~n~t~~~v~~~~~ 72 (175)
|++++.-++.-.+.+++++.....+.-+.|..+..|.....-.+-.-.+++++-|.+. ++-+.+.+.++.+
T Consensus 1 ~~~~~r~~~~~~~~~l~~~~~~~~a~AHa~l~~s~Pad~s~v~aaP~~i~L~Fse~ve-~~fs~~~l~~~d~ 71 (127)
T COG2372 1 MARTARALALSALALLMLALVTPQAFAHAYLVSSNPADNSVVTAAPAAITLEFSEGVE-PGFSGAKLTGPDG 71 (127)
T ss_pred CchhHHHHHHHHHHHHHHHhcCcchhheeeeecCCCCCcchhhcCceeEEEecCCccC-CCcceeEEECCCC
Confidence 3444444433333343443333334445666666665543345667789999999876 3446677777753
No 6
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=33.90 E-value=94 Score=28.19 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=34.7
Q ss_pred EEEEecccccCCCCCCcceEeEEEEEEEecCCcceEEEEEEEEEccCccCC-eeeEEeccceeeeeEeEEEEEEEeeCCC
Q 046982 82 INMIDNPLTAGPEMSSKMVGRAQGFYALASQEEVGLLMAMNFAFIEGKYNG-KMPVIEGNGLFRFARGYVQARTHNFDPK 160 (175)
Q Consensus 82 ~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~~g~~~G-E~aVVGGTG~Fr~ArGya~~~t~~~~~~ 160 (175)
+-|.|||+|-|.++ +..|..|+|.+ -|+ =+||...+--..
T Consensus 38 v~v~ddp~ty~~~~--------------------------~~lf~~~~f~e~kwS----------RKGfmrtrw~i~--- 78 (356)
T PTZ00312 38 VPVVDDPLTYGSSP--------------------------TRLFHGGKFSGAGRS----------RKGFLLLSLRLG--- 78 (356)
T ss_pred eeeccCccccCCCC--------------------------ceeccCCccCCCCcc----------ccceEEEEEEEC---
Confidence 67889999998775 24577777764 332 357766544332
Q ss_pred CCCeEEEEEEEEEe
Q 046982 161 TGDATVQYNVYVMH 174 (175)
Q Consensus 161 ~~~~v~el~V~v~h 174 (175)
+..+--+|+|++|
T Consensus 79 -~t~fdfVNiHLFH 91 (356)
T PTZ00312 79 -TVVVNVLNVHLYN 91 (356)
T ss_pred -CEEEEEEEeeccC
Confidence 2346667888887
No 7
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=19.80 E-value=71 Score=20.27 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.2
Q ss_pred ccccCCCCCCcceEeEE
Q 046982 88 PLTAGPEMSSKMVGRAQ 104 (175)
Q Consensus 88 ~lt~Gp~~~Sk~VGRaQ 104 (175)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 57889999999997763
No 8
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=19.57 E-value=86 Score=19.49 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=13.4
Q ss_pred ccccCCCCCCcceEeE
Q 046982 88 PLTAGPEMSSKMVGRA 103 (175)
Q Consensus 88 ~lt~Gp~~~Sk~VGRa 103 (175)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 3678899999999886
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=16.05 E-value=1.2e+02 Score=22.24 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=4.1
Q ss_pred CccchhhHH
Q 046982 1 MVKFLPIFA 9 (175)
Q Consensus 1 ~~~~~~~~~ 9 (175)
|| +++++.
T Consensus 1 Ma-SK~~ll 8 (95)
T PF07172_consen 1 MA-SKAFLL 8 (95)
T ss_pred Cc-hhHHHH
Confidence 66 555333
No 10
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=13.92 E-value=60 Score=27.62 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=7.4
Q ss_pred eee-EEeccceee
Q 046982 133 KMP-VIEGNGLFR 144 (175)
Q Consensus 133 E~a-VVGGTG~Fr 144 (175)
.+| ||||||-|-
T Consensus 57 k~PIlvGGTglYi 69 (253)
T PF01715_consen 57 KIPILVGGTGLYI 69 (253)
T ss_dssp -EEEEEES-HHHH
T ss_pred CeEEEECChHHHH
Confidence 455 789999763
Done!