Query 046982
Match_columns 175
No_of_seqs 130 out of 534
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.4 6.8E-06 2.3E-10 66.1 12.5 119 43-173 13-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.2 3.2E-05 1.1E-09 62.4 12.6 123 42-172 13-154 (195)
3 2q03_A Uncharacterized protein 25.2 2.1E+02 0.0073 21.3 7.8 35 133-171 100-136 (138)
4 3h6j_A Neuraminidase, sialidas 21.9 58 0.002 27.7 3.0 21 112-132 370-390 (438)
5 2ooj_A Hypothetical protein; s 18.4 3E+02 0.01 20.5 10.0 57 97-155 41-121 (141)
6 2e56_A Lymphocyte antigen 96; 15.2 3.3E+02 0.011 20.7 5.6 33 142-175 107-140 (144)
7 2krs_A Probable enterotoxin; a 12.8 81 0.0028 20.4 1.4 16 88-103 12-27 (74)
8 2kq8_A Cell WALL hydrolase; GF 12.3 66 0.0023 20.6 0.8 16 88-103 13-28 (70)
9 2kt8_A Probable surface protei 11.3 1.5E+02 0.005 19.3 2.3 16 88-103 14-29 (76)
10 3ozb_A Methylthioadenosine pho 6.7 1.3E+02 0.0045 24.5 0.6 15 133-147 17-31 (259)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.36 E-value=6.8e-06 Score=66.13 Aligned_cols=119 Identities=19% Similarity=0.332 Sum_probs=82.3
Q ss_pred CCCeeEEEEE-eeecCCCCCCceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEec----CCcceE
Q 046982 43 KEKLTHFQIH-WHDIQSGQNPTPISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALAS----QEEVGL 117 (175)
Q Consensus 43 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~----~~~~~~ 117 (175)
+.|...|.+| +.+.-.+. |.-.++-+ .+...-|..+.|+++|.+|.. -+.||.-+|.-+... +.+..+
T Consensus 13 ~~~vq~l~vye~NE~dr~s-Pa~L~l~~----k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdry 85 (188)
T 2brj_A 13 PSKVQELSVYEINELDRHS-PKILKNAF----SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERF 85 (188)
T ss_dssp --CCEEEEEEEECCSCSCC-CCCBCCCS----SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEE
T ss_pred ccceEEEEEEEecccccCC-CceEEccc----ccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEE
Confidence 3466778888 44433221 22222221 123458999999999997754 588999999977665 334556
Q ss_pred EEEEEEEEcc-C--ccCC--------eeeEEeccceeeeeEeEEEEEEEeeCCCCCCeEEEEEEEEE
Q 046982 118 LMAMNFAFIE-G--KYNG--------KMPVIEGNGLFRFARGYVQARTHNFDPKTGDATVQYNVYVM 173 (175)
Q Consensus 118 ~~~~~~vF~~-g--~~~G--------E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~el~V~v~ 173 (175)
--.+++.|-+ | ..+| .++|.||||.|+.|||.++++...+. ..++|.+|+.
T Consensus 86 E~tyS~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 86 EATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EEEEEEEeCCCceEEEeccccccccceeeEecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 6777777753 3 2344 89999999999999999999999863 2478888774
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.17 E-value=3.2e-05 Score=62.43 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=79.8
Q ss_pred cCCCeeEEEEE-eeecCCCCCCceEEEecCCCC---CCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEec----CC
Q 046982 42 KKEKLTHFQIH-WHDIQSGQNPTPISVVRPPTN---TSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALAS----QE 113 (175)
Q Consensus 42 ~~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~---~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~----~~ 113 (175)
++.|...|++| +.|.-.+. |.-.++-+-... ..-...|+.+.|+++|.+|.. -+-||-..|+-+.-. +.
T Consensus 13 ~p~~vqel~VyEiNE~dr~s-Pa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~ 89 (195)
T 4h6b_A 13 SPGHVQELFVYEINERDRGS-PVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKN 89 (195)
T ss_dssp ---CCEEEEEEEECCSCSCC-CCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTT
T ss_pred CCceeEEEEEEEecccccCC-cceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCCC
Confidence 35677788888 55543332 222332211111 112469999999999999986 678999999976653 23
Q ss_pred cceEEEEEEEEEcc-Cc--cCC--------eeeEEeccceeeeeEeEEEEEEEeeCCCCCCeEEEEEEEE
Q 046982 114 EVGLLMAMNFAFIE-GK--YNG--------KMPVIEGNGLFRFARGYVQARTHNFDPKTGDATVQYNVYV 172 (175)
Q Consensus 114 ~~~~~~~~~~vF~~-g~--~~G--------E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~el~V~v 172 (175)
+..+--.+++.|-+ |. ..| -++|+||||.|+.|+|-+++..+-+. ..+-|..|+
T Consensus 90 GdryEci~Tf~fGD~GhIsvqGpy~t~eDs~lAITGGTGiF~Ga~GqVkl~qiv~p-----fklfytfyl 154 (195)
T 4h6b_A 90 GDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIFP-----FKLFYTFYL 154 (195)
T ss_dssp EEEEEEEEEEECGGGCEEEEEEEEETTBCEEEEEEEESGGGTTCEEEEEEEEEETT-----TEEEEEEEE
T ss_pred CceEEEEEEEEecCCceEEEecceeccCceeEEEecCcceEcccEEEEEEeEeeee-----eeEEEEEEe
Confidence 34455666777765 32 233 89999999999999999999887763 234455554
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=25.25 E-value=2.1e+02 Score=21.31 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=25.1
Q ss_pred eeeEEe--ccceeeeeEeEEEEEEEeeCCCCCCeEEEEEEE
Q 046982 133 KMPVIE--GNGLFRFARGYVQARTHNFDPKTGDATVQYNVY 171 (175)
Q Consensus 133 E~aVVG--GTG~Fr~ArGya~~~t~~~~~~~~~~v~el~V~ 171 (175)
.|-||= |||++...+|-..+.... .+..-++|+..
T Consensus 100 ~~~VVPgSGTGeLaGl~G~g~~~~~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 100 EFELVERSATGDFVHLVGKGHFVSTE----NGQANYQITLQ 136 (138)
T ss_dssp EEEECTTCCEETTTTEEEEEEEEECS----TTEEEEEEEEE
T ss_pred EEEEeCCCccccccCcEEEEEEEEec----CCceEEEEEEe
Confidence 888998 999999999999985432 24444555543
No 4
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=21.91 E-value=58 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.9
Q ss_pred CCcceEEEEEEEEEccCccCC
Q 046982 112 QEEVGLLMAMNFAFIEGKYNG 132 (175)
Q Consensus 112 ~~~~~~~~~~~~vF~~g~~~G 132 (175)
.....|...|--.|++|.++|
T Consensus 370 sspstwnivmpsyfndgghkg 390 (438)
T 3h6j_A 370 SSPSTWNIVMPSYFNDGGHKG 390 (438)
T ss_dssp SSCSCCEECCCEEEESSSEEE
T ss_pred CCCcceeEeccceecCCCcCC
Confidence 344568888888999999988
No 5
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=18.39 E-value=3e+02 Score=20.48 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=36.7
Q ss_pred CcceEeEEEEEEEecCC--cceEEEEEEEEEccCccCC--------------------eeeEEe--ccceeeeeEeEEEE
Q 046982 97 SKMVGRAQGFYALASQE--EVGLLMAMNFAFIEGKYNG--------------------KMPVIE--GNGLFRFARGYVQA 152 (175)
Q Consensus 97 Sk~VGRaQG~~~~~~~~--~~~~~~~~~~vF~~g~~~G--------------------E~aVVG--GTG~Fr~ArGya~~ 152 (175)
-.+.|+.++-++.+-.+ +..-+..+-.+ .|.++| .|-||= |||++...+|-..+
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f--~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~ 118 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQV--VGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI 118 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEE--EEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEE--EEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEE
Confidence 34677778888777653 33333332211 123333 888998 99999999999998
Q ss_pred EEE
Q 046982 153 RTH 155 (175)
Q Consensus 153 ~t~ 155 (175)
...
T Consensus 119 ~~~ 121 (141)
T 2ooj_A 119 SIE 121 (141)
T ss_dssp EEE
T ss_pred EEc
Confidence 644
No 6
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=15.19 E-value=3.3e+02 Score=20.74 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=21.4
Q ss_pred eeeeeEe-EEEEEEEeeCCCCCCeEEEEEEEEEeC
Q 046982 142 LFRFARG-YVQARTHNFDPKTGDATVQYNVYVMHY 175 (175)
Q Consensus 142 ~Fr~ArG-ya~~~t~~~~~~~~~~v~el~V~v~hy 175 (175)
.+++-+| |-.+...- +..++..+.=+|+++.||
T Consensus 107 g~~fpkG~Y~~~~ea~-~~~~e~~l~ClNfTii~~ 140 (144)
T 2e56_A 107 GIKFSKGKYKCVVEAI-SGSPEEMLFCLEFVILHQ 140 (144)
T ss_dssp CCTTCCSEEEEEEEEE-ETTTTEEEEEEEEEEEEC
T ss_pred cEecCCCcEEEEEEEe-cCCchheEEEeeEEEEEc
Confidence 4667777 43333333 223567899999999997
No 7
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=12.79 E-value=81 Score=20.41 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=14.1
Q ss_pred ccccCCCCCCcceEeE
Q 046982 88 PLTAGPEMSSKMVGRA 103 (175)
Q Consensus 88 ~lt~Gp~~~Sk~VGRa 103 (175)
.|+.+|+.++++||++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999999886
No 8
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=12.25 E-value=66 Score=20.58 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=13.6
Q ss_pred ccccCCCCCCcceEeE
Q 046982 88 PLTAGPEMSSKMVGRA 103 (175)
Q Consensus 88 ~lt~Gp~~~Sk~VGRa 103 (175)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999999875
No 9
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.32 E-value=1.5e+02 Score=19.34 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.8
Q ss_pred ccccCCCCCCcceEeE
Q 046982 88 PLTAGPEMSSKMVGRA 103 (175)
Q Consensus 88 ~lt~Gp~~~Sk~VGRa 103 (175)
.|+.+|+.+++.+|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5789999999999876
No 10
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=6.71 E-value=1.3e+02 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=12.7
Q ss_pred eeeEEeccceeeeeE
Q 046982 133 KMPVIEGNGLFRFAR 147 (175)
Q Consensus 133 E~aVVGGTG~Fr~Ar 147 (175)
++.||||||-..++.
T Consensus 17 ~igiI~GSGl~~l~~ 31 (259)
T 3ozb_A 17 VYAIIGGTGLTQLEG 31 (259)
T ss_dssp CEEEEECTTSTTCTT
T ss_pred CEEEEccCCcchhhh
Confidence 789999999887764
Done!