BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046985
         (105 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EBB|A Chain A, Structure Of Dpp2
 pdb|4EBB|B Chain B, Structure Of Dpp2
          Length = 472

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 14  YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTE--NLKYLSSKQALFDLA 61
           ++  LA + GA +V  EH YYGKS PF + ST+  + + L+ +QAL D A
Sbjct: 64  FVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFA 113


>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
 pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
 pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
 pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
 pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
           Gsk237826a
 pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
           Gsk237826a
 pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
           Gsk237826a
 pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
           Gsk237826a
          Length = 469

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 14  YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTE--NLKYLSSKQALFDLA 61
           ++  LA + GA +V  EH YYGKS PF + ST+  + + L+ +QAL D A
Sbjct: 67  FVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFA 116


>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
           Angstroms Resolution
          Length = 446

 Score = 38.1 bits (87), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 18  LAKKFGAAVVSLEHHYYGKSSPFKSLS---TENLKYLSSKQALFDLA 61
           +A++  A +V  EH YYG+S PF   S   + +L +L+S+QAL D A
Sbjct: 64  VAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFA 110


>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
          Length = 555

 Score = 28.5 bits (62), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 27  VSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRF 64
           ++  H  Y KS+P +S  + N+KY SS++   D  I F
Sbjct: 499 ITYNHGDYSKSNPSRSKESLNVKYPSSEERENDGTIAF 536


>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
           Laminaripentaose
 pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
           Laminaritriose And Laminaritetraose
          Length = 555

 Score = 28.5 bits (62), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 27  VSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRF 64
           ++  H  Y KS+P +S  + N+KY SS++   D  I F
Sbjct: 499 ITYNHGDYSKSNPSRSKESLNVKYPSSEERENDGTIAF 536


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,179,182
Number of Sequences: 62578
Number of extensions: 105173
Number of successful extensions: 375
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 23
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)