Query 046985
Match_columns 105
No_of_seqs 116 out of 731
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05577 Peptidase_S28: Serine 100.0 3.8E-38 8.3E-43 253.4 2.3 98 1-99 35-137 (434)
2 KOG2182 Hydrolytic enzymes of 100.0 7.4E-35 1.6E-39 241.5 7.8 98 1-99 92-196 (514)
3 KOG2183 Prolylcarboxypeptidase 100.0 1.6E-32 3.5E-37 224.8 5.4 95 2-96 88-189 (492)
4 PF05576 Peptidase_S37: PS-10 99.4 2.3E-13 5E-18 112.2 5.1 81 15-100 80-160 (448)
5 PLN02298 hydrolase, alpha/beta 95.2 0.065 1.4E-06 41.2 6.1 73 22-100 86-160 (330)
6 PF12697 Abhydrolase_6: Alpha/ 94.5 0.045 9.7E-07 37.3 3.2 77 14-101 17-93 (228)
7 TIGR01250 pro_imino_pep_2 prol 94.4 0.13 2.8E-06 36.7 5.6 76 16-99 46-121 (288)
8 TIGR01249 pro_imino_pep_1 prol 93.9 0.064 1.4E-06 41.0 3.3 70 23-101 53-122 (306)
9 PHA02857 monoglyceride lipase; 93.6 0.32 7E-06 36.0 6.6 73 23-101 52-124 (276)
10 PF00561 Abhydrolase_1: alpha/ 92.6 0.11 2.3E-06 36.3 2.5 70 26-102 3-72 (230)
11 PRK10749 lysophospholipase L2; 92.0 0.6 1.3E-05 36.3 6.3 78 21-99 79-156 (330)
12 PLN02824 hydrolase, alpha/beta 91.8 0.41 9E-06 35.9 5.0 82 14-101 48-129 (294)
13 PRK11126 2-succinyl-6-hydroxy- 91.7 0.24 5.2E-06 35.6 3.6 64 23-98 27-90 (242)
14 PRK10566 esterase; Provisional 91.6 0.48 1E-05 34.5 5.1 76 18-96 50-129 (249)
15 PRK10673 acyl-CoA esterase; Pr 91.6 0.32 6.9E-06 35.1 4.1 67 23-101 42-108 (255)
16 TIGR03611 RutD pyrimidine util 91.5 0.28 6.1E-06 34.6 3.7 67 23-99 39-105 (257)
17 TIGR03056 bchO_mg_che_rel puta 91.2 0.6 1.3E-05 33.8 5.2 71 15-97 48-118 (278)
18 PRK00870 haloalkane dehalogena 90.5 0.46 1E-05 35.9 4.3 69 23-100 73-141 (302)
19 PLN02385 hydrolase; alpha/beta 90.1 0.92 2E-05 35.4 5.7 71 23-100 115-188 (349)
20 TIGR01840 esterase_phb esteras 89.2 0.96 2.1E-05 32.8 4.9 84 15-99 35-120 (212)
21 TIGR03695 menH_SHCHC 2-succiny 89.1 1.2 2.5E-05 30.7 5.0 65 23-96 27-92 (251)
22 TIGR02427 protocat_pcaD 3-oxoa 88.7 0.74 1.6E-05 31.9 3.9 65 23-98 39-103 (251)
23 PLN02652 hydrolase; alpha/beta 88.7 1.2 2.7E-05 36.3 5.7 67 23-96 163-229 (395)
24 PF07859 Abhydrolase_3: alpha/ 88.4 0.84 1.8E-05 32.4 4.1 66 13-92 19-89 (211)
25 TIGR03101 hydr2_PEP hydrolase, 87.9 1.4 3.1E-05 34.2 5.4 71 22-100 55-125 (266)
26 PLN02965 Probable pheophorbida 87.6 1.6 3.5E-05 32.1 5.3 70 23-101 30-99 (255)
27 TIGR00976 /NonD putative hydro 87.2 0.88 1.9E-05 38.2 4.1 77 17-102 48-125 (550)
28 KOG4178 Soluble epoxide hydrol 86.7 0.94 2E-05 36.8 3.8 77 15-101 64-140 (322)
29 COG2267 PldB Lysophospholipase 85.1 2.5 5.4E-05 33.1 5.4 77 16-99 55-132 (298)
30 TIGR03100 hydr1_PEP hydrolase, 84.8 3 6.6E-05 31.6 5.6 64 22-94 56-120 (274)
31 TIGR03343 biphenyl_bphD 2-hydr 84.6 1.6 3.5E-05 32.0 3.9 68 23-100 60-127 (282)
32 PRK03592 haloalkane dehalogena 83.2 2.2 4.8E-05 31.9 4.3 76 14-102 46-121 (295)
33 PRK10985 putative hydrolase; P 81.4 4 8.6E-05 31.6 5.2 72 20-98 84-155 (324)
34 PLN03084 alpha/beta hydrolase 81.0 3.4 7.5E-05 33.6 4.9 71 23-100 153-223 (383)
35 TIGR02240 PHA_depoly_arom poly 80.2 2 4.2E-05 32.0 3.0 75 16-101 42-118 (276)
36 PF12146 Hydrolase_4: Putative 79.6 4 8.8E-05 26.0 4.0 44 15-65 36-79 (79)
37 TIGR01738 bioH putative pimelo 78.8 4.3 9.3E-05 28.0 4.2 63 23-101 30-92 (245)
38 TIGR03502 lipase_Pla1_cef extr 78.6 4.7 0.0001 36.4 5.3 78 15-92 465-573 (792)
39 PLN02511 hydrolase 76.7 6.3 0.00014 31.7 5.2 72 20-98 126-197 (388)
40 PLN02211 methyl indole-3-aceta 75.6 7 0.00015 29.6 4.9 66 23-97 45-110 (273)
41 PRK08775 homoserine O-acetyltr 73.3 3.4 7.4E-05 32.2 2.8 65 23-99 99-163 (343)
42 PF05677 DUF818: Chlamydia CHL 73.0 13 0.00027 31.0 6.0 69 13-91 161-232 (365)
43 PRK03204 haloalkane dehalogena 72.7 6.7 0.00015 29.7 4.2 69 23-101 60-128 (286)
44 PRK14875 acetoin dehydrogenase 71.3 5.7 0.00012 30.4 3.5 67 24-101 158-224 (371)
45 PLN02894 hydrolase, alpha/beta 71.2 11 0.00024 30.5 5.3 76 16-99 126-201 (402)
46 TIGR01836 PHA_synth_III_C poly 70.2 12 0.00026 29.3 5.2 76 14-100 86-162 (350)
47 PRK07581 hypothetical protein; 69.3 7.4 0.00016 29.9 3.8 74 23-100 71-150 (339)
48 PF10503 Esterase_phd: Esteras 67.7 10 0.00022 28.9 4.2 80 15-97 38-120 (220)
49 PRK05855 short chain dehydroge 67.5 8 0.00017 31.4 3.8 57 23-88 51-108 (582)
50 PLN02980 2-oxoglutarate decarb 66.5 7.7 0.00017 37.4 4.0 73 24-100 1398-1471(1655)
51 TIGR01607 PST-A Plasmodium sub 64.6 23 0.00051 27.7 5.9 72 15-91 67-159 (332)
52 PF00326 Peptidase_S9: Prolyl 64.4 5.1 0.00011 28.7 1.9 78 16-97 7-87 (213)
53 PLN03087 BODYGUARD 1 domain co 63.7 7.9 0.00017 32.8 3.2 69 23-101 232-301 (481)
54 PRK06489 hypothetical protein; 62.8 11 0.00024 29.5 3.7 74 23-100 105-180 (360)
55 PF09752 DUF2048: Uncharacteri 60.7 13 0.00027 30.7 3.8 80 15-97 114-198 (348)
56 PLN02679 hydrolase, alpha/beta 60.5 19 0.00042 28.4 4.7 60 23-92 114-173 (360)
57 PTZ00472 serine carboxypeptida 57.7 26 0.00055 29.3 5.2 62 23-89 121-186 (462)
58 PLN02578 hydrolase 56.3 20 0.00043 28.1 4.1 65 23-98 112-176 (354)
59 TIGR01392 homoserO_Ac_trn homo 54.2 19 0.00041 28.1 3.7 75 23-101 72-154 (351)
60 PRK10349 carboxylesterase BioH 52.9 16 0.00034 26.5 2.9 63 23-101 39-101 (256)
61 PF06057 VirJ: Bacterial virul 49.0 25 0.00055 26.6 3.5 63 10-85 17-79 (192)
62 PF12695 Abhydrolase_5: Alpha/ 46.4 9.2 0.0002 24.9 0.7 65 14-95 18-82 (145)
63 PRK10162 acetyl esterase; Prov 45.4 72 0.0016 24.8 5.7 66 14-93 103-173 (318)
64 PF03403 PAF-AH_p_II: Platelet 42.9 17 0.00037 29.6 1.9 21 13-34 118-138 (379)
65 cd00068 GGL G protein gamma su 41.1 20 0.00044 21.6 1.6 20 49-68 18-37 (57)
66 KOG1838 Alpha/beta hydrolase [ 40.3 65 0.0014 27.2 5.0 66 15-88 146-212 (409)
67 PF14320 Paramyxo_PCT: Phospho 39.5 12 0.00027 29.6 0.6 41 27-68 137-185 (313)
68 PF00450 Peptidase_S10: Serine 39.4 39 0.00085 26.5 3.4 41 49-89 108-151 (415)
69 COG1705 FlgJ Muramidase (flage 38.0 33 0.00072 26.3 2.7 49 17-66 82-140 (201)
70 TIGR03230 lipo_lipase lipoprot 37.6 1.3E+02 0.0027 25.5 6.3 71 23-100 73-145 (442)
71 PRK06765 homoserine O-acetyltr 36.8 32 0.00069 28.1 2.6 49 50-101 140-188 (389)
72 PF12066 DUF3546: Domain of un 36.8 8.1 0.00018 26.3 -0.7 11 89-99 45-55 (110)
73 PRK10115 protease 2; Provision 36.6 22 0.00048 31.2 1.7 76 16-99 468-548 (686)
74 PRK05077 frsA fermentation/res 34.4 62 0.0013 26.5 3.9 72 20-101 219-292 (414)
75 PF08060 NOSIC: NOSIC (NUC001) 33.8 14 0.00031 22.0 0.1 15 87-102 23-37 (53)
76 PLN02872 triacylglycerol lipas 32.9 83 0.0018 25.8 4.4 72 16-89 101-175 (395)
77 COG0596 MhpC Predicted hydrola 32.0 68 0.0015 21.3 3.2 64 24-100 51-114 (282)
78 cd00707 Pancreat_lipase_like P 28.4 72 0.0016 24.5 3.2 72 22-100 65-138 (275)
79 TIGR02821 fghA_ester_D S-formy 27.7 1.5E+02 0.0033 22.3 4.8 23 78-100 142-164 (275)
80 COG2021 MET2 Homoserine acetyl 27.6 74 0.0016 26.5 3.3 45 57-102 129-175 (368)
81 COG1506 DAP2 Dipeptidyl aminop 27.3 59 0.0013 28.0 2.8 76 14-96 415-495 (620)
82 PF03096 Ndr: Ndr family; Int 27.1 40 0.00088 26.9 1.6 48 45-96 74-121 (283)
83 PLN02442 S-formylglutathione h 26.6 1.6E+02 0.0035 22.4 4.8 43 56-98 125-167 (283)
84 COG3509 LpqC Poly(3-hydroxybut 25.3 2.1E+02 0.0045 23.5 5.3 81 15-99 83-168 (312)
85 COG0429 Predicted hydrolase of 25.1 2E+02 0.0042 23.9 5.3 72 12-92 94-167 (345)
86 KOG2382 Predicted alpha/beta h 24.3 1.8E+02 0.0039 23.7 4.9 75 13-96 70-146 (315)
87 COG5054 ERV1 Mitochondrial sul 23.6 74 0.0016 24.0 2.4 39 55-101 104-142 (181)
88 PF05728 UPF0227: Uncharacteri 22.6 53 0.0011 24.2 1.4 40 52-95 41-80 (187)
89 PF02167 Cytochrom_C1: Cytochr 22.4 80 0.0017 24.3 2.4 22 51-72 166-187 (219)
90 PF10832 DUF2559: Protein of u 22.0 97 0.0021 19.0 2.3 21 47-67 32-52 (54)
91 COG0276 HemH Protoheme ferro-l 21.4 1E+02 0.0023 25.0 3.0 88 1-92 65-171 (320)
92 cd03411 Ferrochelatase_N Ferro 20.6 1.1E+02 0.0023 21.7 2.6 33 1-33 60-96 (159)
93 PF12986 DUF3870: Domain of un 20.6 55 0.0012 21.9 1.0 15 24-38 66-80 (96)
94 COG0657 Aes Esterase/lipase [L 20.5 3.1E+02 0.0068 20.7 5.4 65 13-91 100-169 (312)
95 PF05427 FIBP: Acidic fibrobla 20.5 40 0.00087 28.0 0.5 31 15-53 165-195 (361)
96 PRK00175 metX homoserine O-ace 20.4 1.7E+02 0.0036 23.2 4.0 46 51-100 127-173 (379)
No 1
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=100.00 E-value=3.8e-38 Score=253.36 Aligned_cols=98 Identities=44% Similarity=0.601 Sum_probs=79.7
Q ss_pred CcCCCCCCC--CCccHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcc---c
Q 046985 1 ICGEYTCDG--IPNDYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLG---Y 75 (105)
Q Consensus 1 igGE~~~~~--~~~g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~---~ 75 (105)
+|||+++++ +.+|++.+||+++||++|++||||||+|.|+++++++||||||++|||+|+|+||++++.+++.. .
T Consensus 35 ~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~p 114 (434)
T PF05577_consen 35 IGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSP 114 (434)
T ss_dssp E--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--
T ss_pred ECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 699999976 47789999999999999999999999999999999999999999999999999999999876432 2
Q ss_pred ccccCCCcchhhhhhhhcccCCCc
Q 046985 76 NFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 76 ~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
.++|||||||+|+||||+|| |++
T Consensus 115 wI~~GgSY~G~Laaw~r~ky-P~~ 137 (434)
T PF05577_consen 115 WIVFGGSYGGALAAWFRLKY-PHL 137 (434)
T ss_dssp EEEEEETHHHHHHHHHHHH--TTT
T ss_pred EEEECCcchhHHHHHHHhhC-CCe
Confidence 33689999999999999999 554
No 2
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=7.4e-35 Score=241.54 Aligned_cols=98 Identities=42% Similarity=0.434 Sum_probs=91.4
Q ss_pred CcCCCCCCC----CCccHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhccc-
Q 046985 1 ICGEYTCDG----IPNDYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGY- 75 (105)
Q Consensus 1 igGE~~~~~----~~~g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~- 75 (105)
||||||+++ .+++.+.++|+++||.++.+||||||+|.|+.+++++||||||++|||+|+|.||+.++.+.+.+.
T Consensus 92 IGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~ 171 (514)
T KOG2182|consen 92 IGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDD 171 (514)
T ss_pred EcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 799999994 467799999999999999999999999999999999999999999999999999999999888755
Q ss_pred --ccccCCCcchhhhhhhhcccCCCc
Q 046985 76 --NFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 76 --~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
.++|||||||.|+||||.|| |||
T Consensus 172 ~~WitFGgSYsGsLsAW~R~~y-Pel 196 (514)
T KOG2182|consen 172 SKWITFGGSYSGSLSAWFREKY-PEL 196 (514)
T ss_pred CCeEEECCCchhHHHHHHHHhC-chh
Confidence 35899999999999999999 776
No 3
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.97 E-value=1.6e-32 Score=224.83 Aligned_cols=95 Identities=28% Similarity=0.374 Sum_probs=83.2
Q ss_pred cCCCCCCCC--CccHHHHHHHHhCCcEEEeeeeeeeccCCCCCC---CccCccCCChHHHHHhHHHHHHHHHHHhhccc-
Q 046985 2 CGEYTCDGI--PNDYLGVLAKKFGAAVVSLEHHYYGKSSPFKSL---STENLKYLSSKQALFDLAIRFIFFLAYVLLGY- 75 (105)
Q Consensus 2 gGE~~~~~~--~~g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~---s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~- 75 (105)
|.||+++.. ++|||+++|.+++|++|+.||||||+|.||.+. +..+|.|||+||||||+|.+++++|++.....
T Consensus 88 GNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~ 167 (492)
T KOG2183|consen 88 GNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEAS 167 (492)
T ss_pred CCcccHHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccC
Confidence 667777653 789999999999999999999999999999765 55789999999999999999999998754432
Q ss_pred -ccccCCCcchhhhhhhhcccC
Q 046985 76 -NFKFAVKQPSVLIEHFSFEFV 96 (105)
Q Consensus 76 -~~~~g~sypg~l~aw~R~kY~ 96 (105)
.+.|||||+|||+||||+|||
T Consensus 168 pvIafGGSYGGMLaAWfRlKYP 189 (492)
T KOG2183|consen 168 PVIAFGGSYGGMLAAWFRLKYP 189 (492)
T ss_pred cEEEecCchhhHHHHHHHhcCh
Confidence 347999999999999999995
No 4
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=99.41 E-value=2.3e-13 Score=112.23 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=75.8
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcc
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFE 94 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~k 94 (105)
-.|+.+-++|..|++||||||.|+|. ..+|+|||++||.+|....++.+|..|..||.-| |+|-+||-+...|.-
T Consensus 80 r~Ept~Lld~NQl~vEhRfF~~SrP~----p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWIST-G~SKGGmTa~y~rrF 154 (448)
T PF05576_consen 80 RSEPTQLLDGNQLSVEHRFFGPSRPE----PADWSYLTIWQAASDQHRIVQAFKPIYPGKWIST-GGSKGGMTAVYYRRF 154 (448)
T ss_pred ccchhHhhccceEEEEEeeccCCCCC----CCCcccccHhHhhHHHHHHHHHHHhhccCCceec-CcCCCceeEEEEeee
Confidence 45899999999999999999999997 5789999999999999999999999999998888 999999999999999
Q ss_pred cCCCcc
Q 046985 95 FVPCLH 100 (105)
Q Consensus 95 Y~~~~~ 100 (105)
||-++.
T Consensus 155 yP~DVD 160 (448)
T PF05576_consen 155 YPDDVD 160 (448)
T ss_pred CCCCCC
Confidence 987765
No 5
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=95.23 E-value=0.065 Score=41.20 Aligned_cols=73 Identities=11% Similarity=-0.019 Sum_probs=53.4
Q ss_pred hCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhh--cccccccCCCcchhhhhhhhcccCCCc
Q 046985 22 FGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVL--LGYNFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 22 ~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~--~~~~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
.|-.++++.+|-+|.|.+... ...+.++..+|+..+++.++.... ......+|-|.+|+++.++-.++|...
T Consensus 86 ~Gy~V~~~D~rGhG~S~~~~~------~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v 159 (330)
T PLN02298 86 MGFACFALDLEGHGRSEGLRA------YVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGF 159 (330)
T ss_pred CCCEEEEecCCCCCCCCCccc------cCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccc
Confidence 377999999999999953211 123678889999999999876421 112234699999999999888996544
Q ss_pred c
Q 046985 100 H 100 (105)
Q Consensus 100 ~ 100 (105)
.
T Consensus 160 ~ 160 (330)
T PLN02298 160 D 160 (330)
T ss_pred e
Confidence 3
No 6
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=94.49 E-value=0.045 Score=37.32 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhc
Q 046985 14 YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSF 93 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~ 93 (105)
++..|+ .|-.+++++.|-+|.|.+..+ ....+.++-.+|+..+++.+.. .+..+ +|-|++|+++..+=.
T Consensus 17 ~~~~l~--~~~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~~~~l~~~l~~~~~---~~~~l-vG~S~Gg~~a~~~a~ 85 (228)
T PF12697_consen 17 LAEALA--RGYRVIAFDLPGHGRSDPPPD-----YSPYSIEDYAEDLAELLDALGI---KKVIL-VGHSMGGMIALRLAA 85 (228)
T ss_dssp HHHHHH--TTSEEEEEECTTSTTSSSHSS-----GSGGSHHHHHHHHHHHHHHTTT---SSEEE-EEETHHHHHHHHHHH
T ss_pred HHHHHh--CCCEEEEEecCCccccccccc-----cCCcchhhhhhhhhhccccccc---ccccc-ccccccccccccccc
Confidence 445564 388999999999999976432 3456678889999999887653 23333 599999999988888
Q ss_pred ccCCCccc
Q 046985 94 EFVPCLHS 101 (105)
Q Consensus 94 kY~~~~~~ 101 (105)
+||....+
T Consensus 86 ~~p~~v~~ 93 (228)
T PF12697_consen 86 RYPDRVKG 93 (228)
T ss_dssp HSGGGEEE
T ss_pred cccccccc
Confidence 88654443
No 7
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=94.42 E-value=0.13 Score=36.73 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=53.3
Q ss_pred HHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhccc
Q 046985 16 GVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEF 95 (105)
Q Consensus 16 ~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY 95 (105)
..+.++.|-.++.+++|-+|.|.+..+. -++.+.++..+|+..+++.+.. .+.. .+|-|++|+++.++=.+|
T Consensus 46 ~~~l~~~g~~vi~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~-liG~S~Gg~ia~~~a~~~ 117 (288)
T TIGR01250 46 RELLKEEGREVIMYDQLGCGYSDQPDDS----DELWTIDYFVDELEEVREKLGL---DKFY-LLGHSWGGMLAQEYALKY 117 (288)
T ss_pred HHHHHhcCCEEEEEcCCCCCCCCCCCcc----cccccHHHHHHHHHHHHHHcCC---CcEE-EEEeehHHHHHHHHHHhC
Confidence 3445555789999999999998643211 1256888888998888776432 2233 459999999998887788
Q ss_pred CCCc
Q 046985 96 VPCL 99 (105)
Q Consensus 96 ~~~~ 99 (105)
|...
T Consensus 118 p~~v 121 (288)
T TIGR01250 118 GQHL 121 (288)
T ss_pred cccc
Confidence 5433
No 8
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=93.90 E-value=0.064 Score=41.03 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=49.8
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+-.+|++++|-+|.|.+-... .-.+.++..+|+..+++.++ .+....+|.|++|+++..+-.+||..+..
T Consensus 53 ~~~vi~~D~~G~G~S~~~~~~-----~~~~~~~~~~dl~~l~~~l~----~~~~~lvG~S~GG~ia~~~a~~~p~~v~~ 122 (306)
T TIGR01249 53 TYRIVLFDQRGCGKSTPHACL-----EENTTWDLVADIEKLREKLG----IKNWLVFGGSWGSTLALAYAQTHPEVVTG 122 (306)
T ss_pred CCEEEEECCCCCCCCCCCCCc-----ccCCHHHHHHHHHHHHHHcC----CCCEEEEEECHHHHHHHHHHHHChHhhhh
Confidence 567999999999999753211 11356788888888877653 22223469999999999998899655443
No 9
>PHA02857 monoglyceride lipase; Provisional
Probab=93.64 E-value=0.32 Score=35.98 Aligned_cols=73 Identities=12% Similarity=-0.016 Sum_probs=49.2
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
|-.++++.+|-+|.|.+.. .+ .-+..+-+.|+..++..++.....+....+|-|.+|+++-.+=.++|..+..
T Consensus 52 g~~via~D~~G~G~S~~~~-~~-----~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~ 124 (276)
T PHA02857 52 GILVFSHDHIGHGRSNGEK-MM-----IDDFGVYVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTA 124 (276)
T ss_pred CCEEEEccCCCCCCCCCcc-CC-----cCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccce
Confidence 7789999999999996521 11 1244556778877777765544432233469999999987766778654443
No 10
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=92.58 E-value=0.11 Score=36.32 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=45.5
Q ss_pred EEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcccc
Q 046985 26 VVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHSV 102 (105)
Q Consensus 26 ~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~~ 102 (105)
+|.+-.|-+|.|.|- ....+...+.+...+|+..+++.+ +.+....+|.|++|+++..+=.+||..+.++
T Consensus 3 vi~~d~rG~g~S~~~---~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~l 72 (230)
T PF00561_consen 3 VILFDLRGFGYSSPH---WDPDFPDYTTDDLAADLEALREAL----GIKKINLVGHSMGGMLALEYAAQYPERVKKL 72 (230)
T ss_dssp EEEEECTTSTTSSSC---CGSGSCTHCHHHHHHHHHHHHHHH----TTSSEEEEEETHHHHHHHHHHHHSGGGEEEE
T ss_pred EEEEeCCCCCCCCCC---ccCCcccccHHHHHHHHHHHHHHh----CCCCeEEEEECCChHHHHHHHHHCchhhcCc
Confidence 677888999999872 112233445555556665555543 3433334699999999998889996645444
No 11
>PRK10749 lysophospholipase L2; Provisional
Probab=91.97 E-value=0.6 Score=36.27 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=52.2
Q ss_pred HhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCc
Q 046985 21 KFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 21 ~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
+.|-.++++.+|-+|.|.+..+. ...-...+.+.-.+|+..+++.+......+....+|-|.+|+++..+=.++|...
T Consensus 79 ~~g~~v~~~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v 156 (330)
T PRK10749 79 HLGYDVLIIDHRGQGRSGRLLDD-PHRGHVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVF 156 (330)
T ss_pred HCCCeEEEEcCCCCCCCCCCCCC-CCcCccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCc
Confidence 34889999999999999643211 1111124788999999999987644332222233589999999877767785443
No 12
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=91.77 E-value=0.41 Score=35.88 Aligned_cols=82 Identities=13% Similarity=-0.062 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhc
Q 046985 14 YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSF 93 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~ 93 (105)
.+..|++. ..++++..|-||.|.+.+....+.-...+.++-.+|+..|++.+.. .+.. .+|-|.+|+++.-+=.
T Consensus 48 ~~~~L~~~--~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~---~~~~-lvGhS~Gg~va~~~a~ 121 (294)
T PLN02824 48 NTPVLAKS--HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVG---DPAF-VICNSVGGVVGLQAAV 121 (294)
T ss_pred HHHHHHhC--CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHhcC---CCeE-EEEeCHHHHHHHHHHH
Confidence 34556655 4899999999999975432211222456888888999999987642 2333 3699999999988888
Q ss_pred ccCCCccc
Q 046985 94 EFVPCLHS 101 (105)
Q Consensus 94 kY~~~~~~ 101 (105)
+||.-..+
T Consensus 122 ~~p~~v~~ 129 (294)
T PLN02824 122 DAPELVRG 129 (294)
T ss_pred hChhheeE
Confidence 89654433
No 13
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=91.71 E-value=0.24 Score=35.57 Aligned_cols=64 Identities=5% Similarity=-0.107 Sum_probs=48.0
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCC
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPC 98 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~ 98 (105)
+--+++++.|-||.|.+... -+.++..+|+..+++... .+....+|-|.+|.++..+-.+|||.
T Consensus 27 ~~~vi~~D~~G~G~S~~~~~--------~~~~~~~~~l~~~l~~~~----~~~~~lvG~S~Gg~va~~~a~~~~~~ 90 (242)
T PRK11126 27 DYPRLYIDLPGHGGSAAISV--------DGFADVSRLLSQTLQSYN----ILPYWLVGYSLGGRIAMYYACQGLAG 90 (242)
T ss_pred CCCEEEecCCCCCCCCCccc--------cCHHHHHHHHHHHHHHcC----CCCeEEEEECHHHHHHHHHHHhCCcc
Confidence 46899999999999865321 167788888888887642 22233369999999999988899776
No 14
>PRK10566 esterase; Provisional
Probab=91.64 E-value=0.48 Score=34.49 Aligned_cols=76 Identities=11% Similarity=-0.080 Sum_probs=47.8
Q ss_pred HHHHhCCcEEEeeeeeeeccCCCCCCCccCcc--CCChHHHHHhHHHHHHHHHHHh--hcccccccCCCcchhhhhhhhc
Q 046985 18 LAKKFGAAVVSLEHHYYGKSSPFKSLSTENLK--YLSSKQALFDLAIRFIFFLAYV--LLGYNFKFAVKQPSVLIEHFSF 93 (105)
Q Consensus 18 lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~--yLt~~QALaD~a~fi~~~~~~~--~~~~~~~~g~sypg~l~aw~R~ 93 (105)
++++ |-.++.+.+|.+|.|.+-. ....+. +=...++++|+..++..++... ..+....+|-|.+|.++.++-.
T Consensus 50 l~~~-G~~v~~~d~~g~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~ 126 (249)
T PRK10566 50 LAQA-GFRVIMPDAPMHGARFSGD--EARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMA 126 (249)
T ss_pred HHhC-CCEEEEecCCcccccCCCc--cccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHH
Confidence 4433 7789999999999864321 111111 1123466788888887776542 2233335699999999988877
Q ss_pred ccC
Q 046985 94 EFV 96 (105)
Q Consensus 94 kY~ 96 (105)
++|
T Consensus 127 ~~~ 129 (249)
T PRK10566 127 RHP 129 (249)
T ss_pred hCC
Confidence 773
No 15
>PRK10673 acyl-CoA esterase; Provisional
Probab=91.57 E-value=0.32 Score=35.12 Aligned_cols=67 Identities=7% Similarity=-0.037 Sum_probs=48.9
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+--+|+++.|-+|.|.+... +|.++-.+|+..+++.+.. .+..+ +|-|.+|+++.-+=.++|....+
T Consensus 42 ~~~vi~~D~~G~G~s~~~~~--------~~~~~~~~d~~~~l~~l~~---~~~~l-vGhS~Gg~va~~~a~~~~~~v~~ 108 (255)
T PRK10673 42 DHDIIQVDMRNHGLSPRDPV--------MNYPAMAQDLLDTLDALQI---EKATF-IGHSMGGKAVMALTALAPDRIDK 108 (255)
T ss_pred CCeEEEECCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHcCC---CceEE-EEECHHHHHHHHHHHhCHhhcce
Confidence 35899999999999976422 4788888999999987532 12333 58899999987776777655444
No 16
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=91.52 E-value=0.28 Score=34.59 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=48.6
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
+-.++++++|-+|.|....+ .-.+.++..+|+..+++.++ .+....+|-|.+|+++..+-.++|...
T Consensus 39 ~~~vi~~D~~G~G~S~~~~~------~~~~~~~~~~~~~~~i~~~~----~~~~~l~G~S~Gg~~a~~~a~~~~~~v 105 (257)
T TIGR03611 39 RFHVVTYDHRGTGRSPGELP------PGYSIAHMADDVLQLLDALN----IERFHFVGHALGGLIGLQLALRYPERL 105 (257)
T ss_pred ccEEEEEcCCCCCCCCCCCc------ccCCHHHHHHHHHHHHHHhC----CCcEEEEEechhHHHHHHHHHHChHHh
Confidence 67999999999999964211 22468888999999988753 222334599999999888777775433
No 17
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=91.18 E-value=0.6 Score=33.78 Aligned_cols=71 Identities=10% Similarity=-0.101 Sum_probs=49.5
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcc
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFE 94 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~k 94 (105)
+..|++ +..++++.+|-+|.|.+... .-.|.+...+|+..+++.+.. .+..+ +|-|.+|+++..+-.+
T Consensus 48 ~~~l~~--~~~vi~~D~~G~G~S~~~~~------~~~~~~~~~~~l~~~i~~~~~---~~~~l-vG~S~Gg~~a~~~a~~ 115 (278)
T TIGR03056 48 MPPLAR--SFRVVAPDLPGHGFTRAPFR------FRFTLPSMAEDLSALCAAEGL---SPDGV-IGHSAGAAIALRLALD 115 (278)
T ss_pred HHHHhh--CcEEEeecCCCCCCCCCccc------cCCCHHHHHHHHHHHHHHcCC---CCceE-EEECccHHHHHHHHHh
Confidence 344554 36899999999999865321 123678888888888876431 12333 5999999999888888
Q ss_pred cCC
Q 046985 95 FVP 97 (105)
Q Consensus 95 Y~~ 97 (105)
+|.
T Consensus 116 ~p~ 118 (278)
T TIGR03056 116 GPV 118 (278)
T ss_pred CCc
Confidence 854
No 18
>PRK00870 haloalkane dehalogenase; Provisional
Probab=90.53 E-value=0.46 Score=35.92 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=48.2
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
+--++++.+|-||+|.+.... .-.+.++..+|++.|++++.. .+..+ +|-|.+|+++..+-.+||..+.
T Consensus 73 gy~vi~~Dl~G~G~S~~~~~~-----~~~~~~~~a~~l~~~l~~l~~---~~v~l-vGhS~Gg~ia~~~a~~~p~~v~ 141 (302)
T PRK00870 73 GHRVIAPDLIGFGRSDKPTRR-----EDYTYARHVEWMRSWFEQLDL---TDVTL-VCQDWGGLIGLRLAAEHPDRFA 141 (302)
T ss_pred CCEEEEECCCCCCCCCCCCCc-----ccCCHHHHHHHHHHHHHHcCC---CCEEE-EEEChHHHHHHHHHHhChhhee
Confidence 568999999999999653211 123567777888888776431 12333 5999999999988888864443
No 19
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=90.11 E-value=0.92 Score=35.38 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=51.0
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccC-CChHHHHHhHHHHHHHHHHHh--hcccccccCCCcchhhhhhhhcccCCCc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKY-LSSKQALFDLAIRFIFFLAYV--LLGYNFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~y-Lt~~QALaD~a~fi~~~~~~~--~~~~~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
|-.++++.+|-+|.|.... .+ .+.++..+|+..+++.++... .......+|-|.+|+++..+-.+||...
T Consensus 115 g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v 187 (349)
T PLN02385 115 GYGVFAMDYPGFGLSEGLH-------GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAW 187 (349)
T ss_pred CCEEEEecCCCCCCCCCCC-------CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchh
Confidence 7789999999999985321 12 367788899999988876432 1112234699999999998888886544
Q ss_pred c
Q 046985 100 H 100 (105)
Q Consensus 100 ~ 100 (105)
.
T Consensus 188 ~ 188 (349)
T PLN02385 188 D 188 (349)
T ss_pred h
Confidence 4
No 20
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=89.25 E-value=0.96 Score=32.85 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=53.0
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcc--cccccCCCcchhhhhhhh
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLG--YNFKFAVKQPSVLIEHFS 92 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~--~~~~~g~sypg~l~aw~R 92 (105)
+..+|++.|..+++.+.|..+.+....++-....+. .......|+..+++.++.++..+ ....+|-|.+|.++..+-
T Consensus 35 ~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a 113 (212)
T TIGR01840 35 WKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRA-RGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLG 113 (212)
T ss_pred hHHHHHhCCeEEEecCCcCccccCCCCCCCCccccC-CCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHH
Confidence 467888899999999998877543211110000000 01234677788888887765432 223458899999999888
Q ss_pred cccCCCc
Q 046985 93 FEFVPCL 99 (105)
Q Consensus 93 ~kY~~~~ 99 (105)
.+||...
T Consensus 114 ~~~p~~~ 120 (212)
T TIGR01840 114 CTYPDVF 120 (212)
T ss_pred HhCchhh
Confidence 8885433
No 21
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=89.07 E-value=1.2 Score=30.72 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=43.8
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHh-HHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccC
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFD-LAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFV 96 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD-~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~ 96 (105)
+..++.+.+|.+|.|... ......+.++.+.| +..+++.+ ..+....+|-|.+|.++..+=.++|
T Consensus 27 ~~~v~~~d~~g~G~s~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~G~S~Gg~ia~~~a~~~~ 92 (251)
T TIGR03695 27 HFRCLAIDLPGHGSSQSP-----DEIERYDFEEAAQDILATLLDQL----GIEPFFLVGYSMGGRIALYYALQYP 92 (251)
T ss_pred cCeEEEEcCCCCCCCCCC-----CccChhhHHHHHHHHHHHHHHHc----CCCeEEEEEeccHHHHHHHHHHhCc
Confidence 788999999999998432 12234567777777 55555543 2222334588999999877766774
No 22
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=88.72 E-value=0.74 Score=31.91 Aligned_cols=65 Identities=8% Similarity=-0.109 Sum_probs=46.3
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCC
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPC 98 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~ 98 (105)
+-.++.+++|-+|.|.+.. ...+.++-.+|+..+++.+.. .+.. .+|-|.+|+++..+=.++|..
T Consensus 39 ~~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~~~~~~i~~~~~---~~v~-liG~S~Gg~~a~~~a~~~p~~ 103 (251)
T TIGR02427 39 DFRVLRYDKRGHGLSDAPE-------GPYSIEDLADDVLALLDHLGI---ERAV-FCGLSLGGLIAQGLAARRPDR 103 (251)
T ss_pred ccEEEEecCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHhCC---CceE-EEEeCchHHHHHHHHHHCHHH
Confidence 6789999999999984321 124788888899888887532 1233 359999999987665577544
No 23
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=88.68 E-value=1.2 Score=36.26 Aligned_cols=67 Identities=12% Similarity=-0.020 Sum_probs=48.0
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccC
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFV 96 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~ 96 (105)
|-.++++.+|-+|.|..... ..-+.++..+|+..+++.++.+........+|-|.+|.++..+- .+|
T Consensus 163 Gy~V~~~D~rGhG~S~~~~~------~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a-~~p 229 (395)
T PLN02652 163 GFGVYAMDWIGHGGSDGLHG------YVPSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA-SYP 229 (395)
T ss_pred CCEEEEeCCCCCCCCCCCCC------CCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH-hcc
Confidence 77999999999999853211 11256788999999999998765433334569999999876553 453
No 24
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=88.45 E-value=0.84 Score=32.45 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=45.3
Q ss_pred cHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHH-----hhcccccccCCCcchhh
Q 046985 13 DYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAY-----VLLGYNFKFAVKQPSVL 87 (105)
Q Consensus 13 g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~-----~~~~~~~~~g~sypg~l 87 (105)
.+...+|++.|..++.++.|-. |.. +..+++.|+...++++.+. +..+.....|.|.+|.|
T Consensus 19 ~~~~~la~~~g~~v~~~~Yrl~----p~~----------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~l 84 (211)
T PF07859_consen 19 PFAARLAAERGFVVVSIDYRLA----PEA----------PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHL 84 (211)
T ss_dssp HHHHHHHHHHTSEEEEEE---T----TTS----------STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHH
T ss_pred HHHHHHHhhccEEEEEeecccc----ccc----------cccccccccccceeeeccccccccccccceEEeecccccch
Confidence 3667799989999999999953 321 3568999999999998876 32233334588888888
Q ss_pred hhhhh
Q 046985 88 IEHFS 92 (105)
Q Consensus 88 ~aw~R 92 (105)
+..+=
T Consensus 85 a~~~~ 89 (211)
T PF07859_consen 85 ALSLA 89 (211)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 75543
No 25
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=87.90 E-value=1.4 Score=34.22 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=50.7
Q ss_pred hCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcc
Q 046985 22 FGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 22 ~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
.|-.++.+.+|-+|+|.... .. .+.++.++|+...++.++... .+....+|-|.+|.++..+-.++|....
T Consensus 55 ~Gy~Vl~~Dl~G~G~S~g~~--~~-----~~~~~~~~Dv~~ai~~L~~~~-~~~v~LvG~SmGG~vAl~~A~~~p~~v~ 125 (266)
T TIGR03101 55 GGFGVLQIDLYGCGDSAGDF--AA-----ARWDVWKEDVAAAYRWLIEQG-HPPVTLWGLRLGALLALDAANPLAAKCN 125 (266)
T ss_pred CCCEEEEECCCCCCCCCCcc--cc-----CCHHHHHHHHHHHHHHHHhcC-CCCEEEEEECHHHHHHHHHHHhCccccc
Confidence 36799999999999985321 11 256778899999888887542 2223346999999998888778865543
No 26
>PLN02965 Probable pheophorbidase
Probab=87.62 E-value=1.6 Score=32.14 Aligned_cols=70 Identities=11% Similarity=-0.114 Sum_probs=49.0
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+--++++.+|-+|.|....+ ...|.++-.+|+..+++.+.. ..+..+ +|-|.+|+++..+=.+||..+.+
T Consensus 30 ~~~via~Dl~G~G~S~~~~~------~~~~~~~~a~dl~~~l~~l~~--~~~~~l-vGhSmGG~ia~~~a~~~p~~v~~ 99 (255)
T PLN02965 30 GFKSTCVDLTGAGISLTDSN------TVSSSDQYNRPLFALLSDLPP--DHKVIL-VGHSIGGGSVTEALCKFTDKISM 99 (255)
T ss_pred CceEEEecCCcCCCCCCCcc------ccCCHHHHHHHHHHHHHhcCC--CCCEEE-EecCcchHHHHHHHHhCchheeE
Confidence 56799999999999942211 134577777888888887531 013334 59999999988887788765543
No 27
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=87.24 E-value=0.88 Score=38.24 Aligned_cols=77 Identities=17% Similarity=0.023 Sum_probs=53.7
Q ss_pred HHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhc-ccccccCCCcchhhhhhhhccc
Q 046985 17 VLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLL-GYNFKFAVKQPSVLIEHFSFEF 95 (105)
Q Consensus 17 ~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~-~~~~~~g~sypg~l~aw~R~kY 95 (105)
.++++ |-.+|...+|-+|.|--. ....+ .+-.+|+..+++.++.+... .....+|.||.|+++...-..+
T Consensus 48 ~l~~~-Gy~vv~~D~RG~g~S~g~-------~~~~~-~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~ 118 (550)
T TIGR00976 48 WFVAQ-GYAVVIQDTRGRGASEGE-------FDLLG-SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQ 118 (550)
T ss_pred HHHhC-CcEEEEEeccccccCCCc-------eEecC-cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccC
Confidence 34444 999999999999998521 11122 46788999999998765211 1222469999999987777778
Q ss_pred CCCcccc
Q 046985 96 VPCLHSV 102 (105)
Q Consensus 96 ~~~~~~~ 102 (105)
||.|..+
T Consensus 119 ~~~l~ai 125 (550)
T TIGR00976 119 PPALRAI 125 (550)
T ss_pred CCceeEE
Confidence 8776543
No 28
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=86.66 E-value=0.94 Score=36.85 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=57.3
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcc
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFE 94 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~k 94 (105)
+..+|.. +=-++++--|.||.|.+- ++..--|++.-.+|+..++..+. ..+..+ +|-+++.|++-++++.
T Consensus 64 ~~~la~~-~~rviA~DlrGyG~Sd~P-----~~~~~Yt~~~l~~di~~lld~Lg---~~k~~l-vgHDwGaivaw~la~~ 133 (322)
T KOG4178|consen 64 IPGLASR-GYRVIAPDLRGYGFSDAP-----PHISEYTIDELVGDIVALLDHLG---LKKAFL-VGHDWGAIVAWRLALF 133 (322)
T ss_pred hhhhhhc-ceEEEecCCCCCCCCCCC-----CCcceeeHHHHHHHHHHHHHHhc---cceeEE-EeccchhHHHHHHHHh
Confidence 4446665 478999999999998653 23333568888899999999986 234444 4999999999999999
Q ss_pred cCCCccc
Q 046985 95 FVPCLHS 101 (105)
Q Consensus 95 Y~~~~~~ 101 (105)
||+-...
T Consensus 134 ~Perv~~ 140 (322)
T KOG4178|consen 134 YPERVDG 140 (322)
T ss_pred Chhhcce
Confidence 9654443
No 29
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=85.09 E-value=2.5 Score=33.13 Aligned_cols=77 Identities=16% Similarity=0.030 Sum_probs=54.5
Q ss_pred HHHHHHhCCcEEEeeeeeeeccCC-CCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcc
Q 046985 16 GVLAKKFGAAVVSLEHHYYGKSSP-FKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFE 94 (105)
Q Consensus 16 ~~lA~~~~al~v~lEHRyYG~S~P-~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~k 94 (105)
.+++.+ |-.++++.||=.|.|.. ... ..-+-++-..|+..|++.+..+........+|-|-+|.++.-+=..
T Consensus 55 ~~l~~~-G~~V~~~D~RGhG~S~r~~rg------~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~ 127 (298)
T COG2267 55 DDLAAR-GFDVYALDLRGHGRSPRGQRG------HVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLAR 127 (298)
T ss_pred HHHHhC-CCEEEEecCCCCCCCCCCCcC------CchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHh
Confidence 344444 88999999999999973 111 1122678899999999998865443334457999999998766666
Q ss_pred cCCCc
Q 046985 95 FVPCL 99 (105)
Q Consensus 95 Y~~~~ 99 (105)
+++.+
T Consensus 128 ~~~~i 132 (298)
T COG2267 128 YPPRI 132 (298)
T ss_pred CCccc
Confidence 76544
No 30
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=84.79 E-value=3 Score=31.60 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=45.8
Q ss_pred hCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhh-cccccccCCCcchhhhhhhhcc
Q 046985 22 FGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVL-LGYNFKFAVKQPSVLIEHFSFE 94 (105)
Q Consensus 22 ~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~-~~~~~~~g~sypg~l~aw~R~k 94 (105)
.|-.++.+..|-+|+|.+.. .+.++..+|+..+++.++.+.. .+....+|-|.+|+++..+-..
T Consensus 56 ~G~~v~~~Dl~G~G~S~~~~---------~~~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~ 120 (274)
T TIGR03100 56 AGFPVLRFDYRGMGDSEGEN---------LGFEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA 120 (274)
T ss_pred CCCEEEEeCCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh
Confidence 37799999999999986421 2467788999999999986542 2223345889988887665433
No 31
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=84.56 E-value=1.6 Score=31.99 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=43.7
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
+-.++++.+|-+|.|.+....... +... .+|+..|++.+. .+....+|-|.+|+++..+-.+||....
T Consensus 60 ~~~vi~~D~~G~G~S~~~~~~~~~-----~~~~-~~~l~~~l~~l~----~~~~~lvG~S~Gg~ia~~~a~~~p~~v~ 127 (282)
T TIGR03343 60 GYRVILKDSPGFNKSDAVVMDEQR-----GLVN-ARAVKGLMDALD----IEKAHLVGNSMGGATALNFALEYPDRIG 127 (282)
T ss_pred CCEEEEECCCCCCCCCCCcCcccc-----cchh-HHHHHHHHHHcC----CCCeeEEEECchHHHHHHHHHhChHhhc
Confidence 789999999999999754211000 1111 367777776643 2222335999999998887778854443
No 32
>PRK03592 haloalkane dehalogenase; Provisional
Probab=83.22 E-value=2.2 Score=31.94 Aligned_cols=76 Identities=11% Similarity=-0.102 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhc
Q 046985 14 YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSF 93 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~ 93 (105)
++..|++.+ -+|++..|-||.|.+... . .|.+...+|+..+++.+.. .+..+ +|-|.+|+++.-+=.
T Consensus 46 ~~~~L~~~~--~via~D~~G~G~S~~~~~------~-~~~~~~a~dl~~ll~~l~~---~~~~l-vGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 46 IIPHLAGLG--RCLAPDLIGMGASDKPDI------D-YTFADHARYLDAWFDALGL---DDVVL-VGHDWGSALGFDWAA 112 (295)
T ss_pred HHHHHhhCC--EEEEEcCCCCCCCCCCCC------C-CCHHHHHHHHHHHHHHhCC---CCeEE-EEECHHHHHHHHHHH
Confidence 344566653 899999999999954321 1 3677777999999887642 23333 588999999888888
Q ss_pred ccCCCcccc
Q 046985 94 EFVPCLHSV 102 (105)
Q Consensus 94 kY~~~~~~~ 102 (105)
+||.-..++
T Consensus 113 ~~p~~v~~l 121 (295)
T PRK03592 113 RHPDRVRGI 121 (295)
T ss_pred hChhheeEE
Confidence 886544443
No 33
>PRK10985 putative hydrolase; Provisional
Probab=81.45 E-value=4 Score=31.64 Aligned_cols=72 Identities=7% Similarity=-0.167 Sum_probs=47.6
Q ss_pred HHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCC
Q 046985 20 KKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPC 98 (105)
Q Consensus 20 ~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~ 98 (105)
.+.|-.++...+|=+|.|.... .+ ..+.. .++|+..+++.+++.++.+....+|-|.+|.+++.+-.+++++
T Consensus 84 ~~~G~~v~~~d~rG~g~~~~~~---~~---~~~~~-~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~ 155 (324)
T PRK10985 84 QKRGWLGVVMHFRGCSGEPNRL---HR---IYHSG-ETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDD 155 (324)
T ss_pred HHCCCEEEEEeCCCCCCCccCC---cc---eECCC-chHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCC
Confidence 4557789999999998763210 11 11112 2588888888888765543344569999998777666677654
No 34
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=81.05 E-value=3.4 Score=33.62 Aligned_cols=71 Identities=6% Similarity=-0.107 Sum_probs=49.3
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
+-.++++..|-||.|.+.... ...-.|.++-.+|+..|++.+.. .+..+ +|.|+.|+++..+=.+||..+.
T Consensus 153 ~~~Via~DlpG~G~S~~p~~~---~~~~ys~~~~a~~l~~~i~~l~~---~~~~L-vG~s~GG~ia~~~a~~~P~~v~ 223 (383)
T PLN03084 153 NYHAIAFDWLGFGFSDKPQPG---YGFNYTLDEYVSSLESLIDELKS---DKVSL-VVQGYFSPPVVKYASAHPDKIK 223 (383)
T ss_pred CCEEEEECCCCCCCCCCCccc---ccccCCHHHHHHHHHHHHHHhCC---CCceE-EEECHHHHHHHHHHHhChHhhc
Confidence 578999999999998643211 01124788888999999987642 12333 5889999888777778864443
No 35
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=80.24 E-value=2 Score=31.97 Aligned_cols=75 Identities=12% Similarity=-0.004 Sum_probs=50.7
Q ss_pred HHHHHHh--CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhc
Q 046985 16 GVLAKKF--GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSF 93 (105)
Q Consensus 16 ~~lA~~~--~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~ 93 (105)
..+++.+ +-.++++.+|=+|+|.... . -.+.+.-.+|+..|++.+.. .+..+ +|-|.+|+++..+=.
T Consensus 42 ~~~~~~L~~~~~vi~~Dl~G~G~S~~~~-~------~~~~~~~~~~~~~~i~~l~~---~~~~L-vG~S~GG~va~~~a~ 110 (276)
T TIGR02240 42 FPFIEALDPDLEVIAFDVPGVGGSSTPR-H------PYRFPGLAKLAARMLDYLDY---GQVNA-IGVSWGGALAQQFAH 110 (276)
T ss_pred HHHHHHhccCceEEEECCCCCCCCCCCC-C------cCcHHHHHHHHHHHHHHhCc---CceEE-EEECHHHHHHHHHHH
Confidence 3344444 3589999999999995321 1 13566666788888887531 23344 599999999988888
Q ss_pred ccCCCccc
Q 046985 94 EFVPCLHS 101 (105)
Q Consensus 94 kY~~~~~~ 101 (105)
++|..+.+
T Consensus 111 ~~p~~v~~ 118 (276)
T TIGR02240 111 DYPERCKK 118 (276)
T ss_pred HCHHHhhh
Confidence 88654433
No 36
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=79.55 E-value=4 Score=25.98 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHH
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFI 65 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~ 65 (105)
...|++ .|-.+++.-||-.|+|..... ..=+.++-++|+..|++
T Consensus 36 a~~L~~-~G~~V~~~D~rGhG~S~g~rg------~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 36 AEFLAE-QGYAVFAYDHRGHGRSEGKRG------HIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred HHHHHh-CCCEEEEECCCcCCCCCCccc------ccCCHHHHHHHHHHHhC
Confidence 344444 488999999999999974211 12246888999998863
No 37
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=78.78 E-value=4.3 Score=27.99 Aligned_cols=63 Identities=13% Similarity=0.002 Sum_probs=41.2
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+-.++++.+|-+|.|.+.. ..+.++..+|+..+. ..+..+ +|-|.+|.++..+=.+||....+
T Consensus 30 ~~~vi~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~-------~~~~~l-vG~S~Gg~~a~~~a~~~p~~v~~ 92 (245)
T TIGR01738 30 HFTLHLVDLPGHGRSRGFG--------PLSLADAAEAIAAQA-------PDPAIW-LGWSLGGLVALHIAATHPDRVRA 92 (245)
T ss_pred CeEEEEecCCcCccCCCCC--------CcCHHHHHHHHHHhC-------CCCeEE-EEEcHHHHHHHHHHHHCHHhhhe
Confidence 4789999999999986532 234556555554432 123333 59999999987777788543443
No 38
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=78.59 E-value=4.7 Score=36.45 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=49.5
Q ss_pred HHHHHHHh---CCcEEEeeeeeeeccCCCCC--C----CccCccCC----------ChHHHHHhHHHHHHHHH------H
Q 046985 15 LGVLAKKF---GAAVVSLEHHYYGKSSPFKS--L----STENLKYL----------SSKQALFDLAIRFIFFL------A 69 (105)
Q Consensus 15 ~~~lA~~~---~al~v~lEHRyYG~S~P~~~--~----s~~~L~yL----------t~~QALaD~a~fi~~~~------~ 69 (105)
+..+|+.+ |-.+|.+.||.+|+|..-.+ . +.+.+.|+ +.+|++.|+..++..++ .
T Consensus 465 ~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~ 544 (792)
T TIGR03502 465 ALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGA 544 (792)
T ss_pred HHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhccccccc
Confidence 44455554 45689999999999933211 1 22334454 45999999999999987 2
Q ss_pred H------hhcccccccCCCcchhhhhhhh
Q 046985 70 Y------VLLGYNFKFAVKQPSVLIEHFS 92 (105)
Q Consensus 70 ~------~~~~~~~~~g~sypg~l~aw~R 92 (105)
+ ++......+|-|-++++...|-
T Consensus 545 ~~~~~~~~~~~~V~~lGHSLGgiig~~~~ 573 (792)
T TIGR03502 545 PLSGINVIDGSKVSFLGHSLGGIVGTSFI 573 (792)
T ss_pred ccccccCCCCCcEEEEecCHHHHHHHHHH
Confidence 2 1111112358888888875543
No 39
>PLN02511 hydrolase
Probab=76.74 E-value=6.3 Score=31.71 Aligned_cols=72 Identities=11% Similarity=-0.055 Sum_probs=50.8
Q ss_pred HHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCC
Q 046985 20 KKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPC 98 (105)
Q Consensus 20 ~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~ 98 (105)
.+.|-.+|++.+|=+|.|.... . ++. ...-.+|+..++++++..+.......+|-|.+|+++..+=.++|..
T Consensus 126 ~~~g~~vv~~d~rG~G~s~~~~---~---~~~-~~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~ 197 (388)
T PLN02511 126 RSKGWRVVVFNSRGCADSPVTT---P---QFY-SASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGEN 197 (388)
T ss_pred HHCCCEEEEEecCCCCCCCCCC---c---CEE-cCCchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCC
Confidence 4568899999999999986431 1 111 2344679999999998876543333459999999987776777543
No 40
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=75.61 E-value=7 Score=29.63 Aligned_cols=66 Identities=8% Similarity=-0.095 Sum_probs=44.8
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCC
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVP 97 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~ 97 (105)
|-.++.+.+|-+|.|.+... ...|.++..+|+..+++.+.. ..+.. .+|-|++|+++..+=.+||.
T Consensus 45 g~~vi~~dl~g~G~s~~~~~------~~~~~~~~~~~l~~~i~~l~~--~~~v~-lvGhS~GG~v~~~~a~~~p~ 110 (273)
T PLN02211 45 GYKVTCIDLKSAGIDQSDAD------SVTTFDEYNKPLIDFLSSLPE--NEKVI-LVGHSAGGLSVTQAIHRFPK 110 (273)
T ss_pred CCEEEEecccCCCCCCCCcc------cCCCHHHHHHHHHHHHHhcCC--CCCEE-EEEECchHHHHHHHHHhChh
Confidence 66899999999998754321 235677777888888776421 12333 45999999998776666743
No 41
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=73.31 E-value=3.4 Score=32.16 Aligned_cols=65 Identities=5% Similarity=-0.072 Sum_probs=44.3
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
+--+|++.+|-+|.|.+. . .+.+.-.+|+..|++.+.. .+....+|-|.+|+++..+=.+||..+
T Consensus 99 ~~~Vi~~Dl~G~g~s~~~-~--------~~~~~~a~dl~~ll~~l~l---~~~~~lvG~SmGG~vA~~~A~~~P~~V 163 (343)
T PRK08775 99 RFRLLAFDFIGADGSLDV-P--------IDTADQADAIALLLDALGI---ARLHAFVGYSYGALVGLQFASRHPARV 163 (343)
T ss_pred ccEEEEEeCCCCCCCCCC-C--------CCHHHHHHHHHHHHHHcCC---CcceEEEEECHHHHHHHHHHHHChHhh
Confidence 457899999988887432 1 2355557888888887531 122223599999999988888885443
No 42
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=73.03 E-value=13 Score=30.96 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=52.4
Q ss_pred cHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhh---cccccccCCCcchhhhh
Q 046985 13 DYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVL---LGYNFKFAVKQPSVLIE 89 (105)
Q Consensus 13 g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~---~~~~~~~g~sypg~l~a 89 (105)
..+.++|++.+|.++..--|-+|.|+= ..|.++-..|...-+++++.+-. .+....+|-|-+|.++|
T Consensus 161 ~~~~~~ak~~~aNvl~fNYpGVg~S~G----------~~s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa 230 (365)
T PF05677_consen 161 DWIQRFAKELGANVLVFNYPGVGSSTG----------PPSRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQA 230 (365)
T ss_pred HHHHHHHHHcCCcEEEECCCccccCCC----------CCCHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHH
Confidence 357889999999999999999999842 22357777888888888875332 35556778899999876
Q ss_pred hh
Q 046985 90 HF 91 (105)
Q Consensus 90 w~ 91 (105)
-.
T Consensus 231 ~A 232 (365)
T PF05677_consen 231 EA 232 (365)
T ss_pred HH
Confidence 43
No 43
>PRK03204 haloalkane dehalogenase; Provisional
Probab=72.67 E-value=6.7 Score=29.69 Aligned_cols=69 Identities=7% Similarity=-0.076 Sum_probs=44.1
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+-.+|++.+|-||.|....+. . .+.+.-.+|+..+++.+ ..+....+|-|++|.++..+=.+||....+
T Consensus 60 ~~~vi~~D~~G~G~S~~~~~~-----~-~~~~~~~~~~~~~~~~~----~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~ 128 (286)
T PRK03204 60 RFRCVAPDYLGFGLSERPSGF-----G-YQIDEHARVIGEFVDHL----GLDRYLSMGQDWGGPISMAVAVERADRVRG 128 (286)
T ss_pred CcEEEEECCCCCCCCCCCCcc-----c-cCHHHHHHHHHHHHHHh----CCCCEEEEEECccHHHHHHHHHhChhheeE
Confidence 357999999999998542211 1 24555556666666553 233223359999999987777778654443
No 44
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=71.27 E-value=5.7 Score=30.43 Aligned_cols=67 Identities=10% Similarity=-0.082 Sum_probs=43.9
Q ss_pred CcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 24 AAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 24 al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
-.++.++.|-+|.|.+... ..+.++..+|+..+++.+. .+....+|-|.+|.++.-+-.++|..+..
T Consensus 158 ~~v~~~d~~g~G~s~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~ 224 (371)
T PRK14875 158 RPVIALDLPGHGASSKAVG-------AGSLDELAAAVLAFLDALG----IERAHLVGHSMGGAVALRLAARAPQRVAS 224 (371)
T ss_pred CEEEEEcCCCCCCCCCCCC-------CCCHHHHHHHHHHHHHhcC----CccEEEEeechHHHHHHHHHHhCchheeE
Confidence 5789999999999854321 2356777777777776542 22223359999999887555567544443
No 45
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=71.24 E-value=11 Score=30.55 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=44.2
Q ss_pred HHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhccc
Q 046985 16 GVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEF 95 (105)
Q Consensus 16 ~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY 95 (105)
..|++ +-.++++.+|-+|.|.... . .+-+.+++.++++.-+..+......+....+|-|.+|.++..+-.+|
T Consensus 126 ~~L~~--~~~vi~~D~rG~G~S~~~~-~-----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~ 197 (402)
T PLN02894 126 DALAS--RFRVIAIDQLGWGGSSRPD-F-----TCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKH 197 (402)
T ss_pred HHHHh--CCEEEEECCCCCCCCCCCC-c-----ccccHHHHHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhC
Confidence 34554 3679999999999985321 1 12234555443332222222222333223459999999999888888
Q ss_pred CCCc
Q 046985 96 VPCL 99 (105)
Q Consensus 96 ~~~~ 99 (105)
|...
T Consensus 198 p~~v 201 (402)
T PLN02894 198 PEHV 201 (402)
T ss_pred chhh
Confidence 6544
No 46
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=70.17 E-value=12 Score=29.25 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHH-HhHHHHHHHHHHHhhcccccccCCCcchhhhhhhh
Q 046985 14 YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQAL-FDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFS 92 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QAL-aD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R 92 (105)
++..+++ .|-.++.+..|..|.|.. ..+.+.-. .|+...++.++.....+....+|-|.+|+++..+-
T Consensus 86 ~~~~L~~-~G~~V~~~D~~g~g~s~~----------~~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~ 154 (350)
T TIGR01836 86 LVRGLLE-RGQDVYLIDWGYPDRADR----------YLTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYA 154 (350)
T ss_pred HHHHHHH-CCCeEEEEeCCCCCHHHh----------cCCHHHHHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHH
Confidence 4455555 477899999888776532 23444444 44777777777665544333459999999988776
Q ss_pred cccCCCcc
Q 046985 93 FEFVPCLH 100 (105)
Q Consensus 93 ~kY~~~~~ 100 (105)
.++|..+.
T Consensus 155 ~~~~~~v~ 162 (350)
T TIGR01836 155 ALYPDKIK 162 (350)
T ss_pred HhCchhee
Confidence 67754443
No 47
>PRK07581 hypothetical protein; Validated
Probab=69.26 E-value=7.4 Score=29.94 Aligned_cols=74 Identities=7% Similarity=-0.014 Sum_probs=42.4
Q ss_pred CCcEEEeeeeeeeccCCCCC----CCccCccCCChHHHHHh-HHHHHHHHHHHhhccc-ccccCCCcchhhhhhhhcccC
Q 046985 23 GAAVVSLEHHYYGKSSPFKS----LSTENLKYLSSKQALFD-LAIRFIFFLAYVLLGY-NFKFAVKQPSVLIEHFSFEFV 96 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~----~s~~~L~yLt~~QALaD-~a~fi~~~~~~~~~~~-~~~~g~sypg~l~aw~R~kY~ 96 (105)
+--+|++..|-||.|.+..+ .+.+.+...+...-+++ .+.+.+.+ ..+. ...+|-|.+|+++..+=..||
T Consensus 71 ~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----gi~~~~~lvG~S~GG~va~~~a~~~P 146 (339)
T PRK07581 71 KYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF----GIERLALVVGWSMGAQQTYHWAVRYP 146 (339)
T ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh----CCCceEEEEEeCHHHHHHHHHHHHCH
Confidence 45799999999999864321 22233333333222222 22243433 2233 223699999999988888895
Q ss_pred CCcc
Q 046985 97 PCLH 100 (105)
Q Consensus 97 ~~~~ 100 (105)
.-+.
T Consensus 147 ~~V~ 150 (339)
T PRK07581 147 DMVE 150 (339)
T ss_pred HHHh
Confidence 4333
No 48
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=67.69 E-value=10 Score=28.85 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=45.8
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCcc-CccCCChHHHHHhHHHHHHHHHHHhhccccc--ccCCCcchhhhhhh
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTE-NLKYLSSKQALFDLAIRFIFFLAYVLLGYNF--KFAVKQPSVLIEHF 91 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~-~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~--~~g~sypg~l~aw~ 91 (105)
+.++|.+.|.+++..|--.-. .+..++.-. ...--...+ .+.++..++++..+++.+.++ ..|-|.+++++.-+
T Consensus 38 ~~~lAd~~GfivvyP~~~~~~--~~~~cw~w~~~~~~~g~~d-~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~l 114 (220)
T PF10503_consen 38 WNALADREGFIVVYPEQSRRA--NPQGCWNWFSDDQQRGGGD-VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVL 114 (220)
T ss_pred HHHHhhcCCeEEEcccccccC--CCCCcccccccccccCccc-hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHH
Confidence 568999999999998842111 111111000 000001111 234556666666666665443 34889999999988
Q ss_pred hcccCC
Q 046985 92 SFEFVP 97 (105)
Q Consensus 92 R~kY~~ 97 (105)
=..||.
T Consensus 115 a~~~pd 120 (220)
T PF10503_consen 115 ACAYPD 120 (220)
T ss_pred HHhCCc
Confidence 889944
No 49
>PRK05855 short chain dehydrogenase; Validated
Probab=67.50 E-value=8 Score=31.39 Aligned_cols=57 Identities=18% Similarity=-0.019 Sum_probs=41.0
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcc-cccccCCCcchhhh
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLG-YNFKFAVKQPSVLI 88 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~-~~~~~g~sypg~l~ 88 (105)
+-.++++++|-+|.|.+... -.-.|.++..+|+..+++.+.. .+ ..+ +|-|.+|+++
T Consensus 51 ~~~Vi~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~i~~l~~---~~~~~l-vGhS~Gg~~a 108 (582)
T PRK05855 51 RFRVVAYDVRGAGRSSAPKR-----TAAYTLARLADDFAAVIDAVSP---DRPVHL-LAHDWGSIQG 108 (582)
T ss_pred ceEEEEecCCCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHhCC---CCcEEE-EecChHHHHH
Confidence 45789999999999964321 1135789999999999997642 12 333 5889988765
No 50
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=66.51 E-value=7.7 Score=37.43 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=50.1
Q ss_pred CcEEEeeeeeeeccCCCCCCCc-cCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcc
Q 046985 24 AAVVSLEHHYYGKSSPFKSLST-ENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 24 al~v~lEHRyYG~S~P~~~~s~-~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
--++++.+|-||.|....+... ..-...+.+...+|+..+++++.. .+..+ +|-|.+|+++..+-.+||....
T Consensus 1398 ~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l~~---~~v~L-vGhSmGG~iAl~~A~~~P~~V~ 1471 (1655)
T PLN02980 1398 ARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHITP---GKVTL-VGYSMGARIALYMALRFSDKIE 1471 (1655)
T ss_pred CEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHhCC---CCEEE-EEECHHHHHHHHHHHhChHhhC
Confidence 5789999999999864322111 111245778778888888876531 23334 5999999999999889975544
No 51
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=64.64 E-value=23 Score=27.69 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=48.2
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccC-CChHHHHHhHHHHHHHHHHH-------------------hh-c
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKY-LSSKQALFDLAIRFIFFLAY-------------------VL-L 73 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~y-Lt~~QALaD~a~fi~~~~~~-------------------~~-~ 73 (105)
+..|+++ |-.++++.||--|.|..... ...+ -+.++-++|+..|++.++.+ +. .
T Consensus 67 ~~~l~~~-G~~V~~~D~rGHG~S~~~~~----~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (332)
T TIGR01607 67 IENFNKN-GYSVYGLDLQGHGESDGLQN----LRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENR 141 (332)
T ss_pred HHHHHHC-CCcEEEecccccCCCccccc----cccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCC
Confidence 4445554 89999999999998863211 1112 36888899999999988752 21 1
Q ss_pred ccccccCCCcchhhhhhh
Q 046985 74 GYNFKFAVKQPSVLIEHF 91 (105)
Q Consensus 74 ~~~~~~g~sypg~l~aw~ 91 (105)
...+.+|-|-+|.++.-+
T Consensus 142 ~p~~l~GhSmGg~i~~~~ 159 (332)
T TIGR01607 142 LPMYIIGLSMGGNIALRL 159 (332)
T ss_pred CceeEeeccCccHHHHHH
Confidence 112346889999877554
No 52
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=64.40 E-value=5.1 Score=28.68 Aligned_cols=78 Identities=12% Similarity=-0.029 Sum_probs=48.4
Q ss_pred HHHHHHhCCcEEEeeeeeee-ccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhc--ccccccCCCcchhhhhhhh
Q 046985 16 GVLAKKFGAAVVSLEHHYYG-KSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLL--GYNFKFAVKQPSVLIEHFS 92 (105)
Q Consensus 16 ~~lA~~~~al~v~lEHRyYG-~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~--~~~~~~g~sypg~l~aw~R 92 (105)
.++-.+.|-.++.+..|--+ .+..+ .+..+--.-.+.+.|+...++.+..+... +.....|.|++|.++.++=
T Consensus 7 ~~~la~~Gy~v~~~~~rGs~g~g~~~----~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 7 AQLLASQGYAVLVPNYRGSGGYGKDF----HEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp HHHHHTTT-EEEEEE-TTSSSSHHHH----HHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEcCCCCCccchhH----HHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 34444559999999988533 11111 11122223456799999999999776433 2233569999999999988
Q ss_pred cccCC
Q 046985 93 FEFVP 97 (105)
Q Consensus 93 ~kY~~ 97 (105)
.++|.
T Consensus 83 ~~~~~ 87 (213)
T PF00326_consen 83 TQHPD 87 (213)
T ss_dssp HHTCC
T ss_pred cccce
Confidence 77743
No 53
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=63.67 E-value=7.9 Score=32.79 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=47.4
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHH-HHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLA-IRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a-~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+--++++..|-||.|....+ ...+.++-.+|+. .+++.+.. .+..+ +|-|.+|+++-.+-.+||..+.+
T Consensus 232 ~yrVia~Dl~G~G~S~~p~~------~~ytl~~~a~~l~~~ll~~lg~---~k~~L-VGhSmGG~iAl~~A~~~Pe~V~~ 301 (481)
T PLN03087 232 TYRLFAVDLLGFGRSPKPAD------SLYTLREHLEMIERSVLERYKV---KSFHI-VAHSLGCILALALAVKHPGAVKS 301 (481)
T ss_pred CCEEEEECCCCCCCCcCCCC------CcCCHHHHHHHHHHHHHHHcCC---CCEEE-EEECHHHHHHHHHHHhChHhccE
Confidence 67899999999999853211 2246777777774 56655321 23344 59999999998888899654444
No 54
>PRK06489 hypothetical protein; Provisional
Probab=62.76 E-value=11 Score=29.50 Aligned_cols=74 Identities=5% Similarity=-0.126 Sum_probs=44.4
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHH-HHHHHHhhcc-cccccCCCcchhhhhhhhcccCCCcc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRF-IFFLAYVLLG-YNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi-~~~~~~~~~~-~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
+-.+|++..|-+|.|....+....+..-.+.++..+|+..++ +.+ ..+ ....+|-|.+|+++..+=.+||-.+.
T Consensus 105 ~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~l----gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~ 180 (360)
T PRK06489 105 KYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGL----GVKHLRLILGTSMGGMHAWMWGEKYPDFMD 180 (360)
T ss_pred CCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhc----CCCceeEEEEECHHHHHHHHHHHhCchhhh
Confidence 357899999999988532211111122245666666665543 332 222 22235999999999888888954433
No 55
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=60.74 E-value=13 Score=30.68 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCC-----CccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhh
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSL-----STENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIE 89 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~-----s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~a 89 (105)
...|+++ |-.-+.+|.=|||+=+|-... +..+| ++=..+.+.+.+.+...++.+-..+..++ |-|-+|.+++
T Consensus 114 a~pLl~~-gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl-~~~g~~~i~E~~~Ll~Wl~~~G~~~~g~~-G~SmGG~~A~ 190 (348)
T PF09752_consen 114 ARPLLKE-GIASLILENPYYGQRKPKDQRRSSLRNVSDL-FVMGRATILESRALLHWLEREGYGPLGLT-GISMGGHMAA 190 (348)
T ss_pred hhHHHHc-CcceEEEecccccccChhHhhcccccchhHH-HHHHhHHHHHHHHHHHHHHhcCCCceEEE-EechhHhhHH
Confidence 4668888 999999999999999996321 22222 22236778999999999988744455566 8888888887
Q ss_pred hhhcccCC
Q 046985 90 HFSFEFVP 97 (105)
Q Consensus 90 w~R~kY~~ 97 (105)
..---+|-
T Consensus 191 laa~~~p~ 198 (348)
T PF09752_consen 191 LAASNWPR 198 (348)
T ss_pred hhhhcCCC
Confidence 66555543
No 56
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=60.52 E-value=19 Score=28.35 Aligned_cols=60 Identities=7% Similarity=-0.116 Sum_probs=40.6
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhh
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFS 92 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R 92 (105)
+--+|++.+|-||.|.+..+ .. .|.+.-.+|+..|++.+.. .+..+ +|-|.+|+++..+-
T Consensus 114 ~~~via~Dl~G~G~S~~~~~-----~~-~~~~~~a~~l~~~l~~l~~---~~~~l-vGhS~Gg~ia~~~a 173 (360)
T PLN02679 114 NYTVYAIDLLGFGASDKPPG-----FS-YTMETWAELILDFLEEVVQ---KPTVL-IGNSVGSLACVIAA 173 (360)
T ss_pred CCEEEEECCCCCCCCCCCCC-----cc-ccHHHHHHHHHHHHHHhcC---CCeEE-EEECHHHHHHHHHH
Confidence 56899999999999964321 12 3677777888888876532 23333 58899998765443
No 57
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=57.73 E-value=26 Score=29.34 Aligned_cols=62 Identities=13% Similarity=-0.073 Sum_probs=41.4
Q ss_pred CCcEEEee-eeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhc---ccccccCCCcchhhhh
Q 046985 23 GAAVVSLE-HHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLL---GYNFKFAVKQPSVLIE 89 (105)
Q Consensus 23 ~al~v~lE-HRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~---~~~~~~g~sypg~l~a 89 (105)
.|.+|+++ ++--|.|..... + .-.+.+++.+|+..|++.+-...+. .....+|-||+|..+.
T Consensus 121 ~~~~l~iDqP~G~G~S~~~~~----~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p 186 (462)
T PTZ00472 121 EAYVIYVDQPAGVGFSYADKA----D-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAP 186 (462)
T ss_pred ccCeEEEeCCCCcCcccCCCC----C-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHH
Confidence 37888888 678888864321 1 1245699999999999987654442 1122458899887763
No 58
>PLN02578 hydrolase
Probab=56.26 E-value=20 Score=28.10 Aligned_cols=65 Identities=8% Similarity=-0.156 Sum_probs=45.4
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCC
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPC 98 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~ 98 (105)
+-.++++..|-+|.|..- ... .+.+.-.+|+..|++.+.. .+.. .+|-|++|.++..+=.+||..
T Consensus 112 ~~~v~~~D~~G~G~S~~~------~~~-~~~~~~a~~l~~~i~~~~~---~~~~-lvG~S~Gg~ia~~~A~~~p~~ 176 (354)
T PLN02578 112 KYKVYALDLLGFGWSDKA------LIE-YDAMVWRDQVADFVKEVVK---EPAV-LVGNSLGGFTALSTAVGYPEL 176 (354)
T ss_pred CCEEEEECCCCCCCCCCc------ccc-cCHHHHHHHHHHHHHHhcc---CCeE-EEEECHHHHHHHHHHHhChHh
Confidence 467999999999988432 112 3566667888888887642 2333 359999999988887788543
No 59
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=54.19 E-value=19 Score=28.08 Aligned_cols=75 Identities=7% Similarity=0.050 Sum_probs=48.4
Q ss_pred CCcEEEeeeee--eeccCCCCCCCc-----cCccCCChHHHHHhHHHHHHHHHHHhhccc-ccccCCCcchhhhhhhhcc
Q 046985 23 GAAVVSLEHHY--YGKSSPFKSLST-----ENLKYLSSKQALFDLAIRFIFFLAYVLLGY-NFKFAVKQPSVLIEHFSFE 94 (105)
Q Consensus 23 ~al~v~lEHRy--YG~S~P~~~~s~-----~~L~yLt~~QALaD~a~fi~~~~~~~~~~~-~~~~g~sypg~l~aw~R~k 94 (105)
+-.||++.||- +|.|.|...... .+..-.|+++-.+|++.+++.+. .+. ...+|-|.+|+++..+=.+
T Consensus 72 ~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~l~G~S~Gg~ia~~~a~~ 147 (351)
T TIGR01392 72 RYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLG----IEQIAAVVGGSMGGMQALEWAID 147 (351)
T ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcC----CCCceEEEEECHHHHHHHHHHHH
Confidence 45899999997 777766321111 11123577887888888877653 332 2345999999998877778
Q ss_pred cCCCccc
Q 046985 95 FVPCLHS 101 (105)
Q Consensus 95 Y~~~~~~ 101 (105)
||..+.+
T Consensus 148 ~p~~v~~ 154 (351)
T TIGR01392 148 YPERVRA 154 (351)
T ss_pred ChHhhhe
Confidence 8644443
No 60
>PRK10349 carboxylesterase BioH; Provisional
Probab=52.91 E-value=16 Score=26.55 Aligned_cols=63 Identities=8% Similarity=0.031 Sum_probs=41.7
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
+--++++++|-+|.|.... ..+.++.++|+..+ ...+..+ +|-|.+|.++..+=.++|..+.+
T Consensus 39 ~~~vi~~Dl~G~G~S~~~~--------~~~~~~~~~~l~~~-------~~~~~~l-vGhS~Gg~ia~~~a~~~p~~v~~ 101 (256)
T PRK10349 39 HFTLHLVDLPGFGRSRGFG--------ALSLADMAEAVLQQ-------APDKAIW-LGWSLGGLVASQIALTHPERVQA 101 (256)
T ss_pred CCEEEEecCCCCCCCCCCC--------CCCHHHHHHHHHhc-------CCCCeEE-EEECHHHHHHHHHHHhChHhhhe
Confidence 3678999999999985321 13566666665532 1234444 59999999998887788654443
No 61
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=49.01 E-value=25 Score=26.61 Aligned_cols=63 Identities=21% Similarity=0.101 Sum_probs=42.7
Q ss_pred CCccHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcch
Q 046985 10 IPNDYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPS 85 (105)
Q Consensus 10 ~~~g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg 85 (105)
...+....|+++ |..||.+--+=|--+. -|.+|.-+|++..|+++..+-+.+...-.|-|++-
T Consensus 17 ~d~~~a~~l~~~-G~~VvGvdsl~Yfw~~------------rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGA 79 (192)
T PF06057_consen 17 LDKQIAEALAKQ-GVPVVGVDSLRYFWSE------------RTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGA 79 (192)
T ss_pred hhHHHHHHHHHC-CCeEEEechHHHHhhh------------CCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCc
Confidence 344455666666 8888887654443332 24799999999999999887666544434777755
No 62
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=46.41 E-value=9.2 Score=24.89 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhc
Q 046985 14 YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSF 93 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~ 93 (105)
+...++++ |-.++.+++|..|.+.-.. ..+++++|+. +...+.+....+|-|.+|.++...=.
T Consensus 18 ~~~~l~~~-G~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~------~~~~~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 18 LAEALAEQ-GYAVVAFDYPGHGDSDGAD----------AVERVLADIR------AGYPDPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp HHHHHHHT-TEEEEEESCTTSTTSHHSH----------HHHHHHHHHH------HHHCTCCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHC-CCEEEEEecCCCCccchhH----------HHHHHHHHHH------hhcCCCCcEEEEEEccCcHHHHHHhh
Confidence 44556666 9999999999999872111 3444444443 11112222334588888888777655
Q ss_pred cc
Q 046985 94 EF 95 (105)
Q Consensus 94 kY 95 (105)
+.
T Consensus 81 ~~ 82 (145)
T PF12695_consen 81 RN 82 (145)
T ss_dssp HS
T ss_pred hc
Confidence 55
No 63
>PRK10162 acetyl esterase; Provisional
Probab=45.36 E-value=72 Score=24.79 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHH---Hhhc--ccccccCCCcchhhh
Q 046985 14 YLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLA---YVLL--GYNFKFAVKQPSVLI 88 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~---~~~~--~~~~~~g~sypg~l~ 88 (105)
+...+|++.|..||.++.| .+ |.. + -.+++.|+...++++.. +++. +.....|.|.+|.|+
T Consensus 103 ~~~~la~~~g~~Vv~vdYr---la-pe~-------~---~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la 168 (318)
T PRK10162 103 IMRLLASYSGCTVIGIDYT---LS-PEA-------R---FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLA 168 (318)
T ss_pred HHHHHHHHcCCEEEEecCC---CC-CCC-------C---CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHH
Confidence 5677899899999999977 22 211 1 12356776666666543 2322 122345889999988
Q ss_pred hhhhc
Q 046985 89 EHFSF 93 (105)
Q Consensus 89 aw~R~ 93 (105)
+++-+
T Consensus 169 ~~~a~ 173 (318)
T PRK10162 169 LASAL 173 (318)
T ss_pred HHHHH
Confidence 66544
No 64
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=42.88 E-value=17 Score=29.59 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=14.1
Q ss_pred cHHHHHHHHhCCcEEEeeeeee
Q 046985 13 DYLGVLAKKFGAAVVSLEHHYY 34 (105)
Q Consensus 13 g~~~~lA~~~~al~v~lEHRyY 34 (105)
.+..+||.. |..|+++|||+-
T Consensus 118 ~~~~eLAS~-GyVV~aieHrDg 138 (379)
T PF03403_consen 118 AICGELASH-GYVVAAIEHRDG 138 (379)
T ss_dssp HHHHHHHHT-T-EEEEE---SS
T ss_pred HHHHHHHhC-CeEEEEeccCCC
Confidence 367889988 999999999963
No 65
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=41.12 E-value=20 Score=21.65 Aligned_cols=20 Identities=15% Similarity=-0.094 Sum_probs=15.6
Q ss_pred cCCChHHHHHhHHHHHHHHH
Q 046985 49 KYLSSKQALFDLAIRFIFFL 68 (105)
Q Consensus 49 ~yLt~~QALaD~a~fi~~~~ 68 (105)
.=..+.||++|+..|.....
T Consensus 18 ~RikvS~a~~~l~~y~e~~~ 37 (57)
T cd00068 18 ERLKVSKAAAELLKYCEQNA 37 (57)
T ss_pred chhhHHHHHHHHHHHHHhcC
Confidence 34568899999999988643
No 66
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=40.34 E-value=65 Score=27.15 Aligned_cols=66 Identities=20% Similarity=0.024 Sum_probs=48.8
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCc-cCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhh
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENL-KYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLI 88 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L-~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~ 88 (105)
+...|++-|=-+|.+-||==|.|.-+ +..+ .+-. ..|+..++++++..++...-..+|-|.+|++.
T Consensus 146 lv~~a~~~G~r~VVfN~RG~~g~~Lt----Tpr~f~ag~----t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL 212 (409)
T KOG1838|consen 146 LVHEAQRKGYRVVVFNHRGLGGSKLT----TPRLFTAGW----TEDLREVVNHIKKRYPQAPLFAVGFSMGGNIL 212 (409)
T ss_pred HHHHHHhCCcEEEEECCCCCCCCccC----CCceeecCC----HHHHHHHHHHHHHhCCCCceEEEEecchHHHH
Confidence 45677888999999999987766533 1111 1111 37999999999999988766677999998875
No 67
>PF14320 Paramyxo_PCT: Phosphoprotein P region PCT disordered
Probab=39.52 E-value=12 Score=29.58 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=30.4
Q ss_pred EEeeeeeeecc--------CCCCCCCccCccCCChHHHHHhHHHHHHHHH
Q 046985 27 VSLEHHYYGKS--------SPFKSLSTENLKYLSSKQALFDLAIRFIFFL 68 (105)
Q Consensus 27 v~lEHRyYG~S--------~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~ 68 (105)
|..|| |||.. .|-.+...+++|..|++.-=+|--.|-..|.
T Consensus 137 vi~e~-yyg~g~r~~~~~~~~~~nvnldsiklytsddee~~qle~edefa 185 (313)
T PF14320_consen 137 VIAEH-YYGLGVREQNVKPQTRRNVNLDSIKLYTSDDEEADQLEFEDEFA 185 (313)
T ss_pred cchhh-hccccccccccCCCCCCccccceeEeeccCcchhhhhhhhhhhc
Confidence 45677 99943 3345667788999999998888888877653
No 68
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=39.37 E-value=39 Score=26.46 Aligned_cols=41 Identities=12% Similarity=-0.093 Sum_probs=29.4
Q ss_pred cCCChHHHHHhHHHHHHHHHHHhhccc--c-cccCCCcchhhhh
Q 046985 49 KYLSSKQALFDLAIRFIFFLAYVLLGY--N-FKFAVKQPSVLIE 89 (105)
Q Consensus 49 ~yLt~~QALaD~a~fi~~~~~~~~~~~--~-~~~g~sypg~l~a 89 (105)
..-+.+|+-.|+..|++.+=...+.-. . ..+|.||+|..+.
T Consensus 108 ~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP 151 (415)
T PF00450_consen 108 YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVP 151 (415)
T ss_dssp GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccch
Confidence 566899999999999998866555321 1 2459999987653
No 69
>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.99 E-value=33 Score=26.28 Aligned_cols=49 Identities=27% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHhCCcEEEeeeeeeeccCCCCCCCcc----------CccCCChHHHHHhHHHHHHH
Q 046985 17 VLAKKFGAAVVSLEHHYYGKSSPFKSLSTE----------NLKYLSSKQALFDLAIRFIF 66 (105)
Q Consensus 17 ~lA~~~~al~v~lEHRyYG~S~P~~~~s~~----------~L~yLt~~QALaD~a~fi~~ 66 (105)
+|+++.| .++-+--.|=|.|..+.....+ --.|-+-.+++.|++.|++.
T Consensus 82 ~l~~~~~-NLFGIK~s~~G~sv~~~T~E~~~G~~~~i~a~FR~Y~S~~eS~~Dya~ll~~ 140 (201)
T COG1705 82 ELASKGN-NLFGIKGSYNGPSVTLKTQEYENGVAVKIKAKFRVYPSYAESLSDYARLLRN 140 (201)
T ss_pred hhccCCC-CeeeeeeccCCCceEeeceeeeCCEEEEEeecccccCCHHHHHHHHHHHHHc
Confidence 3555544 6666666777777665432222 23789999999999999874
No 70
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=37.62 E-value=1.3e+02 Score=25.51 Aligned_cols=71 Identities=8% Similarity=-0.124 Sum_probs=45.4
Q ss_pred CCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhh--cccccccCCCcchhhhhhhhcccCCCcc
Q 046985 23 GAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVL--LGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 23 ~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~--~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
+..+|++..|-+|.|..... . . .++..-+|++.|++.+..... .+....+|-|.++.+++.+-..+|..+.
T Consensus 73 d~nVI~VDw~g~g~s~y~~a--~---~--~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~ 145 (442)
T TIGR03230 73 SANVIVVDWLSRAQQHYPTS--A---A--YTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVN 145 (442)
T ss_pred CCEEEEEECCCcCCCCCccc--c---c--cHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCccee
Confidence 57899999999887632211 1 1 235566789999998865433 2222235889999988777666643343
No 71
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=36.83 E-value=32 Score=28.07 Aligned_cols=49 Identities=0% Similarity=-0.122 Sum_probs=34.4
Q ss_pred CCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 50 YLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 50 yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
-.|+++-.+|+..+++.+.. .+....+|.|.+|+++-.+=.+||..+.+
T Consensus 140 ~~t~~d~~~~~~~ll~~lgi---~~~~~vvG~SmGG~ial~~a~~~P~~v~~ 188 (389)
T PRK06765 140 VVTILDFVRVQKELIKSLGI---ARLHAVMGPSMGGMQAQEWAVHYPHMVER 188 (389)
T ss_pred cCcHHHHHHHHHHHHHHcCC---CCceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 36888888888888876431 12232359999999998888899655443
No 72
>PF12066 DUF3546: Domain of unknown function (DUF3546); InterPro: IPR021933 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 93 to 114 amino acids in length. This domain has two completely conserved Y residues that may be functionally important. ; PDB: 3AX1_A.
Probab=36.80 E-value=8.1 Score=26.33 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=8.7
Q ss_pred hhhhcccCCCc
Q 046985 89 EHFSFEFVPCL 99 (105)
Q Consensus 89 aw~R~kY~~~~ 99 (105)
.|||.||-|+.
T Consensus 45 eWFreKY~P~~ 55 (110)
T PF12066_consen 45 EWFREKYHPEE 55 (110)
T ss_dssp HHHHHHH-HHH
T ss_pred HHHHHhcCcHh
Confidence 79999998864
No 73
>PRK10115 protease 2; Provisional
Probab=36.64 E-value=22 Score=31.20 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=43.5
Q ss_pred HHHHHHhCCcEEEeeeee---eeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccc--cccCCCcchhhhhh
Q 046985 16 GVLAKKFGAAVVSLEHHY---YGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYN--FKFAVKQPSVLIEH 90 (105)
Q Consensus 16 ~~lA~~~~al~v~lEHRy---YG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~--~~~g~sypg~l~aw 90 (105)
..|+.+ |..++..--|= ||+..-- .-+.+.=.+...|+..-++++..+-..... ...|+||+|.|++|
T Consensus 468 ~~l~~r-G~~v~~~n~RGs~g~G~~w~~------~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~ 540 (686)
T PRK10115 468 LSLLDR-GFVYAIVHVRGGGELGQQWYE------DGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGV 540 (686)
T ss_pred HHHHHC-CcEEEEEEcCCCCccCHHHHH------hhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHH
Confidence 345554 66666665553 4433211 111222236678888888777543221111 24599999999999
Q ss_pred hhcccCCCc
Q 046985 91 FSFEFVPCL 99 (105)
Q Consensus 91 ~R~kY~~~~ 99 (105)
.=-.+ |++
T Consensus 541 ~~~~~-Pdl 548 (686)
T PRK10115 541 AINQR-PEL 548 (686)
T ss_pred HHhcC-hhh
Confidence 87777 454
No 74
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=34.39 E-value=62 Score=26.47 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHH--hhcccccccCCCcchhhhhhhhcccCC
Q 046985 20 KKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAY--VLLGYNFKFAVKQPSVLIEHFSFEFVP 97 (105)
Q Consensus 20 ~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~--~~~~~~~~~g~sypg~l~aw~R~kY~~ 97 (105)
.+.|-.++.++.|-+|+|.... .+. + ......+ .++.+... +..+....+|-|.+|.++..+=..+|+
T Consensus 219 a~~Gy~vl~~D~pG~G~s~~~~-~~~-d-----~~~~~~a---vld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ 288 (414)
T PRK05077 219 APRGIAMLTIDMPSVGFSSKWK-LTQ-D-----SSLLHQA---VLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPP 288 (414)
T ss_pred HhCCCEEEEECCCCCCCCCCCC-ccc-c-----HHHHHHH---HHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCc
Confidence 3448899999999999986532 111 1 1111112 22333221 122223346999999988765555654
Q ss_pred Cccc
Q 046985 98 CLHS 101 (105)
Q Consensus 98 ~~~~ 101 (105)
.+..
T Consensus 289 ri~a 292 (414)
T PRK05077 289 RLKA 292 (414)
T ss_pred CceE
Confidence 4443
No 75
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=33.84 E-value=14 Score=21.96 Aligned_cols=15 Identities=47% Similarity=0.793 Sum_probs=11.2
Q ss_pred hhhhhhcccCCCcccc
Q 046985 87 LIEHFSFEFVPCLHSV 102 (105)
Q Consensus 87 l~aw~R~kY~~~~~~~ 102 (105)
+..|...+| |||.++
T Consensus 23 lre~Y~~~F-PEL~~l 37 (53)
T PF08060_consen 23 LREWYSWHF-PELESL 37 (53)
T ss_dssp HHHHHTTTS-TTHHHH
T ss_pred HHHHHHccc-hhHHHH
Confidence 457888777 998873
No 76
>PLN02872 triacylglycerol lipase
Probab=32.89 E-value=83 Score=25.80 Aligned_cols=72 Identities=18% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHHHHhCCcEEEeeeeeeeccCCCCCC---CccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhh
Q 046985 16 GVLAKKFGAAVVSLEHHYYGKSSPFKSL---STENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIE 89 (105)
Q Consensus 16 ~~lA~~~~al~v~lEHRyYG~S~P~~~~---s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~a 89 (105)
..||++ |=.++...-|=.|.|..-.+. +.+-|+|---++|..|+..+++++.+.-..+... +|-|.+|+++-
T Consensus 101 ~~La~~-GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~-VGhS~Gg~~~~ 175 (395)
T PLN02872 101 FILADH-GFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFI-VGHSQGTIMSL 175 (395)
T ss_pred HHHHhC-CCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEE-EEECHHHHHHH
Confidence 345654 778888888876655432112 2333455445678899999999986533333333 58888887753
No 77
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=31.98 E-value=68 Score=21.26 Aligned_cols=64 Identities=11% Similarity=-0.056 Sum_probs=42.1
Q ss_pred CcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCcc
Q 046985 24 AAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 24 al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
-.++++.-|-+|.|. +. ..+..+..+|+..|++.+.. .....+|-|++++++..+-.++|....
T Consensus 51 ~~~~~~d~~g~g~s~--~~-------~~~~~~~~~~~~~~~~~~~~----~~~~l~G~S~Gg~~~~~~~~~~p~~~~ 114 (282)
T COG0596 51 YRVIAPDLRGHGRSD--PA-------GYSLSAYADDLAALLDALGL----EKVVLVGHSMGGAVALALALRHPDRVR 114 (282)
T ss_pred eEEEEecccCCCCCC--cc-------cccHHHHHHHHHHHHHHhCC----CceEEEEecccHHHHHHHHHhcchhhh
Confidence 477888888888886 11 11222227777778775542 223346999999999999889966443
No 78
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=28.39 E-value=72 Score=24.47 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=43.7
Q ss_pred hCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHh--hcccccccCCCcchhhhhhhhcccCCCc
Q 046985 22 FGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYV--LLGYNFKFAVKQPSVLIEHFSFEFVPCL 99 (105)
Q Consensus 22 ~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~--~~~~~~~~g~sypg~l~aw~R~kY~~~~ 99 (105)
.+..+|++.-|-++.+ .+. ..-.+++..-+|++.|++.+.+.. ..+....+|-|.++.+++.+-..+|..+
T Consensus 65 ~~~nVi~vD~~~~~~~-~y~------~a~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v 137 (275)
T cd00707 65 GDYNVIVVDWGRGANP-NYP------QAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKL 137 (275)
T ss_pred CCCEEEEEECcccccc-ChH------HHHHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCcc
Confidence 4577888876654221 110 011235555678888888887652 2222334599999999988887776544
Q ss_pred c
Q 046985 100 H 100 (105)
Q Consensus 100 ~ 100 (105)
.
T Consensus 138 ~ 138 (275)
T cd00707 138 G 138 (275)
T ss_pred c
Confidence 3
No 79
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=27.71 E-value=1.5e+02 Score=22.27 Aligned_cols=23 Identities=0% Similarity=-0.284 Sum_probs=18.4
Q ss_pred ccCCCcchhhhhhhhcccCCCcc
Q 046985 78 KFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 78 ~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
..|.|.+|.++.++=.+||....
T Consensus 142 ~~G~S~GG~~a~~~a~~~p~~~~ 164 (275)
T TIGR02821 142 ITGHSMGGHGALVIALKNPDRFK 164 (275)
T ss_pred EEEEChhHHHHHHHHHhCcccce
Confidence 45999999999999889965443
No 80
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=27.56 E-value=74 Score=26.50 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHhhccccc-ccCCCcchhhh-hhhhcccCCCcccc
Q 046985 57 LFDLAIRFIFFLAYVLLGYNF-KFAVKQPSVLI-EHFSFEFVPCLHSV 102 (105)
Q Consensus 57 LaD~a~fi~~~~~~~~~~~~~-~~g~sypg~l~-aw~R~kY~~~~~~~ 102 (105)
+.|.+...+.+-.....+... .+|+|.+||.+ .|.. .||..+++.
T Consensus 129 i~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~-~yPd~V~~~ 175 (368)
T COG2021 129 IRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAI-RYPDRVRRA 175 (368)
T ss_pred HHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHH-hChHHHhhh
Confidence 456666655544444444332 57999999998 5555 897766543
No 81
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=27.30 E-value=59 Score=28.01 Aligned_cols=76 Identities=16% Similarity=-0.008 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCcEEEeeee---eeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhcc--cccccCCCcchhhh
Q 046985 14 YLGVLAKKFGAAVVSLEHH---YYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLG--YNFKFAVKQPSVLI 88 (105)
Q Consensus 14 ~~~~lA~~~~al~v~lEHR---yYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~--~~~~~g~sypg~l~ 88 (105)
.+..+|.+ |-.|+++.-| -||+.... .-...+... .++|+-..++.+++.-..+ ..-..|+||+|.+.
T Consensus 415 ~~q~~~~~-G~~V~~~n~RGS~GyG~~F~~--~~~~~~g~~----~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymt 487 (620)
T COG1506 415 EIQVLASA-GYAVLAPNYRGSTGYGREFAD--AIRGDWGGV----DLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMT 487 (620)
T ss_pred hhHHHhcC-CeEEEEeCCCCCCccHHHHHH--hhhhccCCc----cHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHH
Confidence 34556665 9999999887 66665432 111122222 3455555555443322222 12245999999999
Q ss_pred hhhhcccC
Q 046985 89 EHFSFEFV 96 (105)
Q Consensus 89 aw~R~kY~ 96 (105)
.|.=.+.|
T Consensus 488 l~~~~~~~ 495 (620)
T COG1506 488 LLAATKTP 495 (620)
T ss_pred HHHHhcCc
Confidence 88776664
No 82
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=27.09 E-value=40 Score=26.94 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=29.8
Q ss_pred ccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccC
Q 046985 45 TENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFV 96 (105)
Q Consensus 45 ~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~ 96 (105)
.++.+|.|++|--+++....++++- +....+|-.-+..+.+=|-++||
T Consensus 74 p~~y~yPsmd~LAe~l~~Vl~~f~l----k~vIg~GvGAGAnIL~rfAl~~p 121 (283)
T PF03096_consen 74 PEGYQYPSMDQLAEMLPEVLDHFGL----KSVIGFGVGAGANILARFALKHP 121 (283)
T ss_dssp -TT-----HHHHHCTHHHHHHHHT-------EEEEEETHHHHHHHHHHHHSG
T ss_pred cccccccCHHHHHHHHHHHHHhCCc----cEEEEEeeccchhhhhhccccCc
Confidence 4577999999999999999988763 44445666666777777777773
No 83
>PLN02442 S-formylglutathione hydrolase
Probab=26.62 E-value=1.6e+02 Score=22.43 Aligned_cols=43 Identities=5% Similarity=-0.223 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCC
Q 046985 56 ALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPC 98 (105)
Q Consensus 56 ALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~ 98 (105)
.++|+...+...-.....+....+|-|.+|.++.++=.+||..
T Consensus 125 ~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~ 167 (283)
T PLN02442 125 VVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDK 167 (283)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchh
Confidence 3445544444432223333333469999999999988899543
No 84
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.28 E-value=2.1e+02 Score=23.46 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=45.5
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccC-CCCCCCc--cCccCCChHHHHHhHHHHHHHHHHHhhccccc--ccCCCcchhhhh
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSS-PFKSLST--ENLKYLSSKQALFDLAIRFIFFLAYVLLGYNF--KFAVKQPSVLIE 89 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~-P~~~~s~--~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~--~~g~sypg~l~a 89 (105)
+..+|.+.|=+|+..|- |..+. +...... .+=+-.-++. ..+++.++..+..++..+..+ .-|-|..|.|+.
T Consensus 83 ~d~lAd~~gFlV~yPdg--~~~~wn~~~~~~~~~p~~~~~g~dd-Vgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~ 159 (312)
T COG3509 83 WDALADREGFLVAYPDG--YDRAWNANGCGNWFGPADRRRGVDD-VGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMAN 159 (312)
T ss_pred hhhhhcccCcEEECcCc--cccccCCCcccccCCcccccCCccH-HHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHH
Confidence 57799999999998842 22333 2211100 1101111111 244555556666666655322 238899999999
Q ss_pred hhhcccCCCc
Q 046985 90 HFSFEFVPCL 99 (105)
Q Consensus 90 w~R~kY~~~~ 99 (105)
++=-.| |+|
T Consensus 160 ~lac~~-p~~ 168 (312)
T COG3509 160 RLACEY-PDI 168 (312)
T ss_pred HHHhcC-ccc
Confidence 999998 443
No 85
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=25.14 E-value=2e+02 Score=23.90 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCcEEEeeeeeeeccCCC-CCCCccCccCCChHHHHHhHHHHHHHHHHHhhcccccccCCCcch-hhhh
Q 046985 12 NDYLGVLAKKFGAAVVSLEHHYYGKSSPF-KSLSTENLKYLSSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPS-VLIE 89 (105)
Q Consensus 12 ~g~~~~lA~~~~al~v~lEHRyYG~S~P~-~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg-~l~a 89 (105)
.|++..+.++ |=.+|.+-=|==+.+.-. +.+.. -..| +|++.|.+.++..........+|-|.+| ||+-
T Consensus 94 r~L~~~~~~r-g~~~Vv~~~Rgcs~~~n~~p~~yh---~G~t-----~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ 164 (345)
T COG0429 94 RGLMRALSRR-GWLVVVFHFRGCSGEANTSPRLYH---SGET-----EDIRFFLDWLKARFPPRPLYAVGFSLGGNMLAN 164 (345)
T ss_pred HHHHHHHHhc-CCeEEEEecccccCCcccCcceec---ccch-----hHHHHHHHHHHHhCCCCceEEEEecccHHHHHH
Confidence 3444444444 666777666655544321 11111 1112 8999999999875554434456999999 7766
Q ss_pred hhh
Q 046985 90 HFS 92 (105)
Q Consensus 90 w~R 92 (105)
|.=
T Consensus 165 ylg 167 (345)
T COG0429 165 YLG 167 (345)
T ss_pred HHH
Confidence 653
No 86
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=24.29 E-value=1.8e+02 Score=23.69 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=51.9
Q ss_pred cHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHHhhc-ccccccCCCcch-hhhhh
Q 046985 13 DYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAYVLL-GYNFKFAVKQPS-VLIEH 90 (105)
Q Consensus 13 g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~~~~-~~~~~~g~sypg-~l~aw 90 (105)
.+-..|+++.++-++++.=|.=|.|.-.... +-+.+-+|+..||+.++..... +.++ .|=|-+| .++..
T Consensus 70 sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h--------~~~~ma~dv~~Fi~~v~~~~~~~~~~l-~GHsmGG~~~~m~ 140 (315)
T KOG2382|consen 70 SVAKNLSRKLGRDVYAVDVRNHGSSPKITVH--------NYEAMAEDVKLFIDGVGGSTRLDPVVL-LGHSMGGVKVAMA 140 (315)
T ss_pred HHHHHhcccccCceEEEecccCCCCcccccc--------CHHHHHHHHHHHHHHcccccccCCcee-cccCcchHHHHHH
Confidence 4667899999999999999999987322222 2566678999999988643222 2333 3777777 55555
Q ss_pred hhcccC
Q 046985 91 FSFEFV 96 (105)
Q Consensus 91 ~R~kY~ 96 (105)
.-.++|
T Consensus 141 ~t~~~p 146 (315)
T KOG2382|consen 141 ETLKKP 146 (315)
T ss_pred HHHhcC
Confidence 566663
No 87
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.58 E-value=74 Score=24.02 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhcccCCCccc
Q 046985 55 QALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEFVPCLHS 101 (105)
Q Consensus 55 QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY~~~~~~ 101 (105)
|-=.|+..|+..+...++ .+++.-=+.-|++ +|||+.+|
T Consensus 104 ~qr~~l~sFl~~~s~~yP-------CgeCs~~f~K~l~-~~ppqv~S 142 (181)
T COG5054 104 QQRDDLRSFLFLFSITYP-------CGECSKHFQKLLD-VYPPQVSS 142 (181)
T ss_pred HHHHHHHHHHHHhhheee-------cHHHHHHHHHHHh-hCCCCccc
Confidence 334788888877654333 3456666777888 99999887
No 88
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.63 E-value=53 Score=24.22 Aligned_cols=40 Identities=5% Similarity=-0.065 Sum_probs=28.6
Q ss_pred ChHHHHHhHHHHHHHHHHHhhcccccccCCCcchhhhhhhhccc
Q 046985 52 SSKQALFDLAIRFIFFLAYVLLGYNFKFAVKQPSVLIEHFSFEF 95 (105)
Q Consensus 52 t~~QALaD~a~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R~kY 95 (105)
+.++|++.+...+..... .....+|.|-+|..+.|+..+|
T Consensus 41 ~p~~a~~~l~~~i~~~~~----~~~~liGSSlGG~~A~~La~~~ 80 (187)
T PF05728_consen 41 FPEEAIAQLEQLIEELKP----ENVVLIGSSLGGFYATYLAERY 80 (187)
T ss_pred CHHHHHHHHHHHHHhCCC----CCeEEEEEChHHHHHHHHHHHh
Confidence 367787777777665432 2133359999999999999888
No 89
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=22.37 E-value=80 Score=24.29 Aligned_cols=22 Identities=9% Similarity=-0.117 Sum_probs=16.6
Q ss_pred CChHHHHHhHHHHHHHHHHHhh
Q 046985 51 LSSKQALFDLAIRFIFFLAYVL 72 (105)
Q Consensus 51 Lt~~QALaD~a~fi~~~~~~~~ 72 (105)
-|.+|+..|++.|+.....+..
T Consensus 166 at~~q~a~DVv~FL~w~aeP~~ 187 (219)
T PF02167_consen 166 ATVDQMAKDVVNFLAWAAEPEK 187 (219)
T ss_dssp --HHHHHHHHHHHHHHHH-TTH
T ss_pred chHHHHHHHHHHHHHHHcCchH
Confidence 6899999999999999876433
No 90
>PF10832 DUF2559: Protein of unknown function (DUF2559); InterPro: IPR022541 This family of proteins appear to be restricted to Proteobacteria. The sequences are annotated as YhfG however currently no function is known.
Probab=22.01 E-value=97 Score=19.03 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=17.5
Q ss_pred CccCCChHHHHHhHHHHHHHH
Q 046985 47 NLKYLSSKQALFDLAIRFIFF 67 (105)
Q Consensus 47 ~L~yLt~~QALaD~a~fi~~~ 67 (105)
.+--||.+||++-++.+.+++
T Consensus 32 ~~vtL~~e~a~~RL~eLRrhY 52 (54)
T PF10832_consen 32 PLVTLTAEQALARLEELRRHY 52 (54)
T ss_pred cceeccHHHHHHHHHHHHHHh
Confidence 456689999999999998865
No 91
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=21.40 E-value=1e+02 Score=25.05 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=50.6
Q ss_pred CcCCCCCCCCCccHHHHHHHHhC--CcEEEeeeeeeeccCCCC-----CC------------CccCccCCChHHHHHhHH
Q 046985 1 ICGEYTCDGIPNDYLGVLAKKFG--AAVVSLEHHYYGKSSPFK-----SL------------STENLKYLSSKQALFDLA 61 (105)
Q Consensus 1 igGE~~~~~~~~g~~~~lA~~~~--al~v~lEHRyYG~S~P~~-----~~------------s~~~L~yLt~~QALaD~a 61 (105)
|||.+|+..++.-....|+++++ =..|.+=+||- .|+- .+ -.....+-|+..+..++.
T Consensus 65 igg~sPL~~~T~~q~~~L~~~L~~~~~~V~~amry~---~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~ 141 (320)
T COG0276 65 IGGKSPLNVITRAQAAALEERLDLPDFKVYLAMRYG---PPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELA 141 (320)
T ss_pred hcCCCccHHHHHHHHHHHHHHhCCCCccEEEeecCC---CCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHH
Confidence 68888887777777888888876 66677778874 3441 00 112345567777877776
Q ss_pred HHHHHHHHHhhcccccccCCCcchhhhhhhh
Q 046985 62 IRFIFFLAYVLLGYNFKFAVKQPSVLIEHFS 92 (105)
Q Consensus 62 ~fi~~~~~~~~~~~~~~~g~sypg~l~aw~R 92 (105)
.-++..+.....+....| ...|+.+.+|..
T Consensus 142 ~al~~~~~~~~i~~I~~~-~~~p~yI~a~a~ 171 (320)
T COG0276 142 RALKELRGQPKISTIPDY-YDEPLYIEALAD 171 (320)
T ss_pred HHHHhcCCCCceEEecCc-cCChHHHHHHHH
Confidence 665543321111111111 134777666653
No 92
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.63 E-value=1.1e+02 Score=21.67 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=20.0
Q ss_pred CcCCCCCCCCCccHHHHHHHHhCC----cEEEeeeee
Q 046985 1 ICGEYTCDGIPNDYLGVLAKKFGA----AVVSLEHHY 33 (105)
Q Consensus 1 igGE~~~~~~~~g~~~~lA~~~~a----l~v~lEHRy 33 (105)
|||-+|+...+......++++++- ..|..=.||
T Consensus 60 ig~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~amry 96 (159)
T cd03411 60 IGGGSPLNEITRAQAEALEKALDERGIDVKVYLAMRY 96 (159)
T ss_pred cCCCCccHHHHHHHHHHHHHHHhccCCCcEEEehHhc
Confidence 567666655566666677777654 444444555
No 93
>PF12986 DUF3870: Domain of unknown function (DUF3870); InterPro: IPR024617 This domain is found in the C-terminal region of the putative pore-forming toxin YP_001301288.1 from Bacteroides vulgatus ATCC3 [, ], suggesting that the domain may have a lytic function.; PDB: 3KOG_A.
Probab=20.57 E-value=55 Score=21.95 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=10.0
Q ss_pred CcEEEeeeeeeeccC
Q 046985 24 AAVVSLEHHYYGKSS 38 (105)
Q Consensus 24 al~v~lEHRyYG~S~ 38 (105)
.++-.++.||||.|+
T Consensus 66 ~l~~~i~~rY~gsSq 80 (96)
T PF12986_consen 66 ELEKEIERRYFGSSQ 80 (96)
T ss_dssp EEEE-EEEEE-BSEE
T ss_pred HHHHHHHHHhhccch
Confidence 345568899999886
No 94
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=20.47 E-value=3.1e+02 Score=20.74 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=41.0
Q ss_pred cHHHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCChHHHHHhHHHHHHHHHHH---hhc--ccccccCCCcchhh
Q 046985 13 DYLGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSSKQALFDLAIRFIFFLAY---VLL--GYNFKFAVKQPSVL 87 (105)
Q Consensus 13 g~~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~~QALaD~a~fi~~~~~~---~~~--~~~~~~g~sypg~l 87 (105)
.....++...|+.++.+..|---+- |+ ..++.|+..=.+.+... +.. +.....|.|-+|.|
T Consensus 100 ~~~~~~~~~~g~~vv~vdYrlaPe~-~~-------------p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~L 165 (312)
T COG0657 100 ALVARLAAAAGAVVVSVDYRLAPEH-PF-------------PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHL 165 (312)
T ss_pred HHHHHHHHHcCCEEEecCCCCCCCC-CC-------------CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHH
Confidence 4678899999999999998865443 22 23455544444444432 222 22334588999988
Q ss_pred hhhh
Q 046985 88 IEHF 91 (105)
Q Consensus 88 ~aw~ 91 (105)
++++
T Consensus 166 a~~~ 169 (312)
T COG0657 166 ALAL 169 (312)
T ss_pred HHHH
Confidence 8654
No 95
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=20.46 E-value=40 Score=27.97 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=23.9
Q ss_pred HHHHHHHhCCcEEEeeeeeeeccCCCCCCCccCccCCCh
Q 046985 15 LGVLAKKFGAAVVSLEHHYYGKSSPFKSLSTENLKYLSS 53 (105)
Q Consensus 15 ~~~lA~~~~al~v~lEHRyYG~S~P~~~~s~~~L~yLt~ 53 (105)
..+||+++.|+|+...|||=. +...|+|||.
T Consensus 165 s~~la~~YaaivF~~~~Rfe~--------~Kk~l~~l~~ 195 (361)
T PF05427_consen 165 SEELAKKYAAIVFIANNRFET--------GKKKLQYLTF 195 (361)
T ss_pred CHHHHhhhhhHhhhhhhhccc--------cchhhccccH
Confidence 467999999999999999965 2444566664
No 96
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=20.40 E-value=1.7e+02 Score=23.24 Aligned_cols=46 Identities=2% Similarity=-0.075 Sum_probs=32.2
Q ss_pred CChHHHHHhHHHHHHHHHHHhhccc-ccccCCCcchhhhhhhhcccCCCcc
Q 046985 51 LSSKQALFDLAIRFIFFLAYVLLGY-NFKFAVKQPSVLIEHFSFEFVPCLH 100 (105)
Q Consensus 51 Lt~~QALaD~a~fi~~~~~~~~~~~-~~~~g~sypg~l~aw~R~kY~~~~~ 100 (105)
.|.+.-.+|+..|++.+. .+. ...+|-|.+|+++..+=.+||..+.
T Consensus 127 ~~~~~~~~~~~~~l~~l~----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~ 173 (379)
T PRK00175 127 ITIRDWVRAQARLLDALG----ITRLAAVVGGSMGGMQALEWAIDYPDRVR 173 (379)
T ss_pred CCHHHHHHHHHHHHHHhC----CCCceEEEEECHHHHHHHHHHHhChHhhh
Confidence 577887888888888754 332 2235999999998777667865443
Done!