BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046987
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 70/88 (79%)

Query: 36  NSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSDPQQTQTKLSQLTDVT 95
           NSLAEILP  DTPGGPWKVYGVARR RP W+ D+PI Y+QCD+SDP  +Q KLS LTDVT
Sbjct: 15  NSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVT 74

Query: 96  HIFYTTWASSPTEVENCQINGAMLRNVL 123
           H+FY TWA+  TE ENC+ N  M RNVL
Sbjct: 75  HVFYVTWANRSTEQENCEANSKMFRNVL 102


>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
 pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
           Hut6037
          Length = 265

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 74  IQCDVSDPQQTQTKLSQLTDVTHIFYTT 101
           ++C+  +P Q Q+++++ T  T I  TT
Sbjct: 231 LECNGGNPAQVQSRINKFTQFTQILGTT 258


>pdb|1W6U|A Chain A, Structure Of Human Decr Ternary Complex
 pdb|1W6U|B Chain B, Structure Of Human Decr Ternary Complex
 pdb|1W6U|D Chain D, Structure Of Human Decr Ternary Complex
 pdb|1W6U|C Chain C, Structure Of Human Decr Ternary Complex
          Length = 302

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 69  HPIEYIQCDVSDPQQTQTKLSQLTDV 94
           + +  IQCDV DP   Q  +S+L  V
Sbjct: 76  NKVHAIQCDVRDPDMVQNTVSELIKV 101


>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
 pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
          Length = 265

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 74  IQCDVSDPQQTQTKLSQLTDVTHIFYTT 101
           ++C+  +P Q Q+++++ T  T I  TT
Sbjct: 231 LECNGGNPAQVQSRINKFTQFTQILGTT 258


>pdb|1W73|A Chain A, Binary Structure Of Human Decr Solved By Semet Sad.
 pdb|1W73|B Chain B, Binary Structure Of Human Decr Solved By Semet Sad.
 pdb|1W73|C Chain C, Binary Structure Of Human Decr Solved By Semet Sad.
 pdb|1W73|D Chain D, Binary Structure Of Human Decr Solved By Semet Sad.
 pdb|1W8D|A Chain A, Binary Structure Of Human Decr.
 pdb|1W8D|B Chain B, Binary Structure Of Human Decr.
 pdb|1W8D|C Chain C, Binary Structure Of Human Decr.
 pdb|1W8D|D Chain D, Binary Structure Of Human Decr
          Length = 302

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 69  HPIEYIQCDVSDPQQTQTKLSQLTDV 94
           + +  IQCDV DP   Q  +S+L  V
Sbjct: 76  NKVHAIQCDVRDPDXVQNTVSELIKV 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,765
Number of Sequences: 62578
Number of extensions: 115722
Number of successful extensions: 185
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 12
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)