BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046987
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STX2|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana
GN=VEP1 PE=1 SV=1
Length = 388
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 108/129 (83%), Gaps = 4/129 (3%)
Query: 1 MSWWWAGAIGAAKKKLGEDDE----RNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYG 56
MSWWWAGAIGAAKKKL ED+ +V L+IGVTGI+GNSLAEILP DTPGGPWKVYG
Sbjct: 1 MSWWWAGAIGAAKKKLDEDEPSQSFESVALIIGVTGIVGNSLAEILPLSDTPGGPWKVYG 60
Query: 57 VARRPRPHWNADHPIEYIQCDVSDPQQTQTKLSQLTDVTHIFYTTWASSPTEVENCQING 116
VARRPRP WNADHPI+YIQCDVSD + T++KLS LTDVTH+FY TW + +E ENC+ NG
Sbjct: 61 VARRPRPTWNADHPIDYIQCDVSDAEDTRSKLSPLTDVTHVFYVTWTNRESESENCEANG 120
Query: 117 AMLRNVLHS 125
+MLRNVL +
Sbjct: 121 SMLRNVLQA 129
>sp|Q6PQJ9|5BPOR_DIGLA 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Digitalis lanata PE=1
SV=1
Length = 389
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 102/127 (80%), Gaps = 4/127 (3%)
Query: 1 MSWWWAGAIGAAKKKLGEDDER----NVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYG 56
MSWWWAGAIGAAKK+L EDD + +V L++GVTGI+GNSLAEILP DTPGGPWKVYG
Sbjct: 1 MSWWWAGAIGAAKKRLEEDDAQPKHSSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYG 60
Query: 57 VARRPRPHWNADHPIEYIQCDVSDPQQTQTKLSQLTDVTHIFYTTWASSPTEVENCQING 116
VARR RP W+ D+PI Y+QCD+SDP +Q KLS LTDVTH+FY TWA+ TE ENC+ N
Sbjct: 61 VARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANS 120
Query: 117 AMLRNVL 123
M RNVL
Sbjct: 121 KMFRNVL 127
>sp|Q1ZXF7|GMDS_DICDI GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=1
SV=1
Length = 356
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 20 DERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVS 79
+ER V L+ G+TG G+ L E L + V+G+ ++ H+N YI+ D+
Sbjct: 3 EERKVALITGITGQDGSYLTEFLISK-----GYYVHGIIQKIFHHFNTIVKNIYIKIDML 57
Query: 80 DPQQTQT-KLSQLTDVTHIFYTTWASSPTEVEN 111
+++ T LTD +++ +PTE+ N
Sbjct: 58 KEKESLTLHYGDLTDASNLHSIVSKVNPTEIYN 90
>sp|Q9VMW9|GMDS_DROME GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1
SV=2
Length = 395
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 17 GEDDERN-VGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQ 75
E D R+ V L+ G+TG G+ LAE L + D ++V+G+ RR +N IE++
Sbjct: 40 AEGDSRDKVALITGITGQDGSYLAEFLLKKD-----YEVHGIIRRAST-FNTTR-IEHLY 92
Query: 76 CDVSDPQQTQTKL--SQLTDVTHIFYTTWASSPTEVENC 112
D + + KL +TD + + PTE+ N
Sbjct: 93 ADPKAHKGGRMKLHYGDMTDSSSLVKIINMVKPTEIYNL 131
>sp|P55354|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234)
GN=noeL PE=3 SV=1
Length = 351
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 21 ERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSD 80
+R V L+ GVTG G LAE+L + V+G+ RR +N IE+I + D
Sbjct: 3 DRKVALISGVTGQDGAYLAELLLDEG-----YIVHGIKRRS-SSFNTQR-IEHIYQERHD 55
Query: 81 PQ-QTQTKLSQLTDVTHIFYTTWASSPTEVENC 112
P+ + +TD T++ + P E+ N
Sbjct: 56 PEARFFLHYGDMTDSTNLLRIVQQTQPHEIYNL 88
>sp|O57245|3BHS_VACCA 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase
OS=Vaccinia virus (strain Ankara) GN=MVA157L PE=3 SV=1
Length = 346
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 27 VIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSDPQQTQT 86
V G G LG + ++L D +V + P+P + I YIQCD++D + +
Sbjct: 6 VTGGAGFLGRYIVKLLISADDVQ-EIRVIDIVEDPQPITSKVKVINYIQCDINDFDKVRE 64
Query: 87 KLSQLTDVTH 96
L + + H
Sbjct: 65 ALDGVNLIIH 74
>sp|P21097|3BHS_VACCC 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase
OS=Vaccinia virus (strain Copenhagen) GN=A44L PE=3 SV=1
Length = 346
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 27 VIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSDPQQTQT 86
V G G LG + ++L D +V + P+P + I YIQCD++D + +
Sbjct: 6 VTGGAGFLGRYIVKLLISADDVQ-EIRVIDIVEDPQPITSKVKVINYIQCDINDFDKVRE 64
Query: 87 KLSQLTDVTH 96
L + + H
Sbjct: 65 ALDGVNLIIH 74
>sp|P26670|3BHS_VACCW 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase
OS=Vaccinia virus (strain Western Reserve) GN=VACWR170
PE=3 SV=1
Length = 346
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 27 VIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSDPQQTQT 86
V G G LG + ++L D +V + P+P + I YIQCD++D + +
Sbjct: 6 VTGGAGFLGRYIVKLLISADDVQ-EIRVIDIVEDPQPITSKVKVINYIQCDINDFDKVRE 64
Query: 87 KLSQLTDVTH 96
L + + H
Sbjct: 65 ALDGVNLIIH 74
>sp|O85713|NOEL_RHIFH GDP-mannose 4,6-dehydratase OS=Rhizobium fredii (strain HH103)
GN=noeL PE=3 SV=1
Length = 351
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 21 ERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSD 80
+R V L+ GVTG G LAE+L + V+G+ RR +N IE+I + D
Sbjct: 3 DRKVALISGVTGQDGAYLAELLLDEG-----YIVHGIKRRS-SSFNTQR-IEHIYQERHD 55
Query: 81 PQ-QTQTKLSQLTDVTHIFYTTWASSPTEVENC 112
P+ + +TD T++ + P E+ N
Sbjct: 56 PEARFFLHYGDMTDSTNLLRIVQQTQPHEIYNL 88
>sp|O60547|GMDS_HUMAN GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1
Length = 372
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 22 RNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSDP 81
RNV L+ G+TG G+ LAE L ++V+G+ RR +N IE++ +
Sbjct: 23 RNVALITGITGQDGSYLAEFLLEKG-----YEVHGIVRRSSS-FNTGR-IEHLYKNPQAH 75
Query: 82 QQTQTKL--SQLTDVTHIFYTTWASSPTEVEN 111
+ KL LTD T + PTE+ N
Sbjct: 76 IEGNMKLHYGDLTDSTCLVKIINEVKPTEIYN 107
>sp|C3KAD2|ARNA_PSEFS Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain SBW25) GN=arnA PE=3 SV=1
Length = 663
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 17 GEDDERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGV------ARRPRPHWNADHP 70
G R L++GV G +GN L+E L R D ++VYG+ R R H N
Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDR----YEVYGLDIGSDAIERLRSHPN---- 364
Query: 71 IEYIQCDVS 79
Y++ D+S
Sbjct: 365 FHYVEGDIS 373
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 9 IGAAKKKLGEDDERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYG 56
+ K K G DD +V + GV GI+G L + P+ G P +YG
Sbjct: 318 VALVKPKFGYDDALDVFGIHGVRGIVGAVLTGVFADPNVGGTPGLLYG 365
>sp|O74913|YJ72_SCHPO Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC757.02c PE=4 SV=1
Length = 405
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 20 DERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVS 79
+E V +V G TG+ G ++ + L D + + P H I+ +
Sbjct: 3 EEGYVAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRSLKDEYPRKIKHHSIDLLN---E 59
Query: 80 DPQQTQTKLS--QLTDVTHIFYTTWASSPTEVENCQINGAMLRNVLHS 125
+P+ K S + + + ++ + E + C++NG MLRN + +
Sbjct: 60 EPKDIAKKFSLEGVKGINYAYFAAYKEENNEEKLCEVNGNMLRNFVQA 107
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Danio rerio GN=adat3 PE=2 SV=2
Length = 336
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 60 RPRPHWNADHPIEYIQCDVSDPQQTQTKLSQLTDVTH 96
RP H ++ HP+E I C VSD Q T K L+ + H
Sbjct: 71 RPCKHKDSPHPLEVIVCLVSDVQCTDPKKVTLSHLLH 107
>sp|O45583|GMD2_CAEEL GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis elegans GN=gmd-2
PE=1 SV=1
Length = 382
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 21 ERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARR 60
ER V L+ G+TG G+ LAE+L +KV+G+ RR
Sbjct: 32 ERKVALITGITGQDGSYLAELLLSKG-----YKVHGIIRR 66
>sp|Q4KC82|ARNA_PSEF5 Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3
SV=1
Length = 668
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 17 GEDDERNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGV------ARRPRPHWNADHP 70
G R L++GV G +GN L+E L R D + VYG+ R R H N
Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDK----YDVYGLDIGSDAIERLRSHPN---- 364
Query: 71 IEYIQCDVS 79
+++ D+S
Sbjct: 365 FHFVEGDIS 373
>sp|A6NKP2|D42E2_HUMAN Putative short-chain dehydrogenase/reductase family 42E member 2
OS=Homo sapiens GN=SDR42E2 PE=3 SV=3
Length = 422
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 22 RNVGLVIGVTGILGNSLAEILPRPDTPGGPWKVYGVARRPRPHWNADHPIEYIQCDVSDP 81
R LV G G LG SL L + T V + RR RP W ++IQ DV D
Sbjct: 33 RQKVLVTGGGGYLGFSLGSHLAKSGT-----SVILLDRR-RPQWELSPETKFIQADVRDE 86
Query: 82 QQTQTKLSQLTDVTHI 97
+ + V H+
Sbjct: 87 EALYRAFEGVDCVFHV 102
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1
SV=1
Length = 440
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 9 IGAAKKKLGEDDERNVGLVIGV---TGILGNSLAEILPRPDT-----------PGGPWKV 54
+ AA +G +N G+++G+ G +GN+ ++P P G P
Sbjct: 322 VPAAPGLIGNMMGQNTGMMVGMPMHNGFMGNAQTGVMPLPQNVVGPQGGMVGQMGAPQSK 381
Query: 55 YGVARRPRPHWN 66
+G+ + +P WN
Sbjct: 382 FGLPQAQQPQWN 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,896,902
Number of Sequences: 539616
Number of extensions: 2247626
Number of successful extensions: 4596
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4576
Number of HSP's gapped (non-prelim): 35
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)