BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046989
LIHFYPSGGHSCLRDSDEARIRAKRKKFWEKAVDIEERCGVGETGWGVKEEMRGNFNHSN
KPISYAEHFRNSQFVESILDVYRELPPVSGPSLTHQTRFDPARVCSPILEDGRNGLFQRL
RLARLETSVFNGYTQMVYLQISEQVS

High Scoring Gene Products

Symbol, full name Information P value
AT3G16200 protein from Arabidopsis thaliana 1.0e-52

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046989
        (146 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094962 - symbol:AT3G16200 "AT3G16200" species...   546  1.0e-52   1


>TAIR|locus:2094962 [details] [associations]
            symbol:AT3G16200 "AT3G16200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005794 "Golgi apparatus" evidence=IDA]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0009086 "methionine biosynthetic
            process" evidence=RCA] [GO:0005768 "endosome" evidence=IDA]
            [GO:0005802 "trans-Golgi network" evidence=IDA] GO:GO:0005794
            EMBL:CP002686 GO:GO:0005768 EMBL:AB023046 GO:GO:0005802
            IPI:IPI00530025 RefSeq:NP_188241.4 UniGene:At.38930 STRING:Q9LU25
            PRIDE:Q9LU25 EnsemblPlants:AT3G16200.1 GeneID:820866
            KEGG:ath:AT3G16200 TAIR:At3g16200 HOGENOM:HOG000005840
            InParanoid:Q9LU25 OMA:AFKGHST PhylomeDB:Q9LU25
            ProtClustDB:CLSN2681565 Genevestigator:Q9LU25 Uniprot:Q9LU25
        Length = 456

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 99/136 (72%), Positives = 118/136 (86%)

Query:     8 GGHSCLRDSDEARIRAKRKKFWEKAVDIEERCGVGETGWGVKEEMRGNFNHSNKPISYAE 67
             GGHSC +DSDEAR+R+KRKKFWEKAVD EE CG GET WGVK EMR +FNH+N PISY +
Sbjct:   318 GGHSCFKDSDEARMRSKRKKFWEKAVDTEELCGPGETWWGVKGEMRDDFNHTNTPISYNQ 377

Query:    68 HFRNSQFVESILDVYRELPPVSGPSLTHQTRFDPARVCSPILEDGRNGLFQRLRLARLET 127
             HF+NS++VESILDVY ELPPV+GPSLTHQ+R+DPAR   PI+ DG++ LFQR+ L RL+ 
Sbjct:   378 HFQNSRYVESILDVYWELPPVAGPSLTHQSRYDPARATPPIVADGKHRLFQRIGLGRLDK 437

Query:   128 SVFNGYTQMVYLQISE 143
             SVFNGYTQMVYL+IS+
Sbjct:   438 SVFNGYTQMVYLEISK 453


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       146   0.00079  103 3  11 22  0.45    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.11u 0.18s 15.29t   Elapsed:  00:00:00
  Total cpu time:  15.11u 0.18s 15.29t   Elapsed:  00:00:00
  Start:  Fri May 10 10:20:49 2013   End:  Fri May 10 10:20:49 2013

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