Query 046989
Match_columns 146
No_of_seqs 13 out of 15
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 11:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksn_A Ubiquitin domain-contai 41.4 11 0.00038 29.0 1.7 16 17-32 34-49 (137)
2 3lk2_T Carmil homolog, leucine 38.8 18 0.00062 24.0 2.2 21 83-103 12-32 (52)
3 2ch0_A Inner nuclear membrane 32.0 11 0.00039 28.3 0.4 16 22-37 60-75 (133)
4 1jli_A Interleukin 3, multi-CS 26.8 90 0.0031 23.3 4.5 44 66-119 52-96 (112)
5 3lk3_T Carmil homolog, leucine 26.7 34 0.0012 25.6 2.2 21 83-103 9-29 (115)
6 3juw_A Probable GNAT-family ac 26.2 47 0.0016 21.1 2.5 29 112-140 145-173 (175)
7 3kde_C Transposable element P 24.0 32 0.0011 24.0 1.5 12 24-35 24-35 (77)
8 2kz7_C Carmil homolog, leucine 21.7 55 0.0019 23.4 2.4 19 84-102 21-39 (85)
9 2ak0_A Alpha-conotoxin MII; al 18.2 33 0.0011 19.9 0.5 12 33-44 10-21 (26)
10 3ioq_A CMS1MS2; caricaceae, cy 17.0 37 0.0013 25.2 0.6 12 43-54 178-189 (213)
No 1
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=41.37 E-value=11 Score=28.96 Aligned_cols=16 Identities=38% Similarity=1.026 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 046989 17 DEARIRAKRKKFWEKA 32 (146)
Q Consensus 17 ~EAr~R~~Rkk~WEkA 32 (146)
-++.++++|+.|||-|
T Consensus 34 Tr~qL~~~R~EFWDT~ 49 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTA 49 (137)
T ss_dssp SHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4789999999999988
No 2
>3lk2_T Carmil homolog, leucine-rich repeat-containing protein 16A; CAPZ, actin filaments, uncapping, actin-filament REG protein-protein complex; 2.20A {Gallus gallus}
Probab=38.80 E-value=18 Score=23.97 Aligned_cols=21 Identities=43% Similarity=0.729 Sum_probs=18.7
Q ss_pred hcCCCCCCCCCccccccCCCC
Q 046989 83 RELPPVSGPSLTHQTRFDPAR 103 (146)
Q Consensus 83 WElPPvA~PsLT~QtryDPAR 103 (146)
=|||++.+--|-|||.--|-|
T Consensus 12 sELPseeg~kLeH~TK~RPk~ 32 (52)
T 3lk2_T 12 SELPSEEGKKLEHFTKLRPKR 32 (52)
T ss_dssp CCCCCSSCSCCCCGGGGSCCC
T ss_pred ccCChHHHhhHHhhhccCCCc
Confidence 499999999999999888765
No 3
>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens}
Probab=32.02 E-value=11 Score=28.30 Aligned_cols=16 Identities=50% Similarity=0.846 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhchhh
Q 046989 22 RAKRKKFWEKAVDIEE 37 (146)
Q Consensus 22 R~~Rkk~WEkAvdi~e 37 (146)
|++|++.|+||+.+=|
T Consensus 60 r~k~~~lW~kAvk~lE 75 (133)
T 2ch0_A 60 RKKMKKVWDRAVDFLA 75 (133)
T ss_dssp GGGGHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6788999999998765
No 4
>1jli_A Interleukin 3, multi-CSF; hematopoietic growth factor, colony-stimulating factor, cytokine; NMR {Homo sapiens} SCOP: a.26.1.2
Probab=26.75 E-value=90 Score=23.29 Aligned_cols=44 Identities=32% Similarity=0.528 Sum_probs=32.0
Q ss_pred HhhhhhhhHHHHHHHHhhcCCCCCCCCCccccccCCCCCCCCc-ccccchhhHHH
Q 046989 66 AEHFRNSQFVESILDVYRELPPVSGPSLTHQTRFDPARVCSPI-LEDGRNGLFQR 119 (146)
Q Consensus 66 ~~Hf~N~r~veSiLd~YWElPPvA~PsLT~QtryDPARt~~Pi-~~dg~~~lF~~ 119 (146)
..||+|--.++|.|+-+==+=|.|.. || |-.|| +.||+-+=||+
T Consensus 52 ~~~~~n~s~I~snLk~l~pcLPtat~--------~p--t~~pI~I~~~dl~DFr~ 96 (112)
T 1jli_A 52 VKHLENASAIESILKNLLPCLPLATA--------AP--TRHPIHIKDGDWNEFRR 96 (112)
T ss_dssp HHHSTTCHHHHHHHHHHGGGSCCTTS--------SC--CSCCCCCCSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHhccccCCcCcC--------CC--CCCCeecccCCHHHHHH
Confidence 46899999999999965444444431 23 35788 77999999986
No 5
>3lk3_T Carmil homolog, leucine-rich repeat-containing protein 16A; CAPZ, actin filaments, uncapping, actin-filament regulators, protein-protein complex; 2.68A {Homo sapiens}
Probab=26.74 E-value=34 Score=25.60 Aligned_cols=21 Identities=43% Similarity=0.729 Sum_probs=18.0
Q ss_pred hcCCCCCCCCCccccccCCCC
Q 046989 83 RELPPVSGPSLTHQTRFDPAR 103 (146)
Q Consensus 83 WElPPvA~PsLT~QtryDPAR 103 (146)
=|||++++--|-|+|+.-|-|
T Consensus 9 ~eLP~~eg~kL~H~Tk~RPRp 29 (115)
T 3lk3_T 9 SELPSEEGKKLEHFTKLRPKR 29 (115)
T ss_dssp CCCCCCSSSCCCCGGGSSCCC
T ss_pred ccCCchhcCccccccCCCCCC
Confidence 489999999999999887643
No 6
>3juw_A Probable GNAT-family acetyltransferase; structural genomics, APC60242, acetyltransferas protein structure initiative; HET: MSE; 2.11A {Bordetella pertussis}
Probab=26.15 E-value=47 Score=21.11 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.7
Q ss_pred cchhhHHHhhccccccccccceeeEEEEE
Q 046989 112 GRNGLFQRLRLARLETSVFNGYTQMVYLQ 140 (146)
Q Consensus 112 g~~~lF~~lGL~~l~~~vFn~YtQM~Y~~ 140 (146)
.-..+|+|+|+.......+.+..-.+|.|
T Consensus 145 ~a~~~y~k~GF~~~~~~~~~g~~~~~~~~ 173 (175)
T 3juw_A 145 PSLRLAERLGFRGYSDVAFDGAAHLLLER 173 (175)
T ss_dssp HHHHHHHHTTCEEEEEEEETTEEEEEEEE
T ss_pred hHHHHHHHcCCeEecceeeCCcEEEEEee
Confidence 34579999999999999999988888865
No 7
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=23.96 E-value=32 Score=24.00 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.3
Q ss_pred HHHHHHHHhhch
Q 046989 24 KRKKFWEKAVDI 35 (146)
Q Consensus 24 ~Rkk~WEkAvdi 35 (146)
.|+|.||++|+-
T Consensus 24 ~~Rk~W~~~l~c 35 (77)
T 3kde_C 24 IKRKLWEQSLGC 35 (77)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHcCC
Confidence 467889999953
No 8
>2kz7_C Carmil homolog, leucine-rich repeat-containing protein 16A; trosy, paramagnetic relaxation enhancement, protein-protein protein binding; NMR {Mus musculus}
Probab=21.70 E-value=55 Score=23.45 Aligned_cols=19 Identities=42% Similarity=0.716 Sum_probs=16.6
Q ss_pred cCCCCCCCCCccccccCCC
Q 046989 84 ELPPVSGPSLTHQTRFDPA 102 (146)
Q Consensus 84 ElPPvA~PsLT~QtryDPA 102 (146)
|||+.++--|-|||+=-|-
T Consensus 21 ELP~~eg~kL~H~Tr~RPR 39 (85)
T 2kz7_C 21 ELPSEEGRRLEHFTKLRPK 39 (85)
T ss_dssp SCTTCCCCCSCCCSCSSSC
T ss_pred cCchhhccccccccccCCC
Confidence 8999999999999987553
No 9
>2ak0_A Alpha-conotoxin MII; alpha-helix, cyclic backbone; NMR {Synthetic}
Probab=18.21 E-value=33 Score=19.86 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=9.5
Q ss_pred hchhhhccCCCc
Q 046989 33 VDIEERCGVGET 44 (146)
Q Consensus 33 vdi~elCg~~~~ 44 (146)
++-+.|||.||+
T Consensus 10 lehsnlcgagga 21 (26)
T 2ak0_A 10 LEHSNLCGAGGA 21 (26)
T ss_dssp HHTHHHHTTTTT
T ss_pred eecccccccCcc
Confidence 456889999986
No 10
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=16.97 E-value=37 Score=25.16 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=9.5
Q ss_pred Ccccccceeecc
Q 046989 43 ETGWGVKEEMRG 54 (146)
Q Consensus 43 ~~WWGvrG~mRD 54 (146)
|+.||-.|+||=
T Consensus 178 G~~WGe~Gy~~i 189 (213)
T 3ioq_A 178 GTGWGEGGYIRI 189 (213)
T ss_dssp CTTSTBTTEEEE
T ss_pred CCCcccCCeEEE
Confidence 567999999863
Done!