Query 046989
Match_columns 146
No_of_seqs 13 out of 15
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 11:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubl1 b.40.4.5 (L:5-122) Rib 40.5 4.6 0.00033 28.6 1.2 16 1-16 62-77 (118)
2 d1jlia_ a.26.1.2 (A:) Interleu 36.6 25 0.0018 24.6 4.7 44 66-119 52-96 (112)
3 d1pjqa3 e.37.1.1 (A:114-215) S 32.4 9.3 0.00068 24.6 1.7 12 23-34 60-71 (102)
4 d2h7ja1 d.3.1.1 (A:1-217) (Pro 32.4 5.7 0.00042 26.5 0.6 16 41-56 185-200 (217)
5 d1cjwa_ d.108.1.1 (A:) Seroton 29.4 12 0.0009 23.2 1.8 58 67-138 99-164 (166)
6 d2r6na1 d.3.1.1 (A:1-215) (Pro 27.1 8 0.00058 26.0 0.6 16 43-58 185-200 (215)
7 d1s4va_ d.3.1.1 (A:) Vignain ( 27.0 8.1 0.00059 25.9 0.6 15 42-56 185-199 (224)
8 d1deua_ d.3.1.1 (A:) (Pro)cath 25.2 9 0.00066 26.9 0.6 12 43-54 236-247 (275)
9 d2zjra2 b.40.4.5 (A:33-127) N- 24.2 11 0.00083 25.2 0.9 14 94-107 47-60 (95)
10 d2qamc2 b.40.4.5 (C:61-124) N- 24.0 12 0.00088 23.4 1.0 14 94-107 17-30 (64)
11 d1ppoa_ d.3.1.1 (A:) Caricain 23.3 11 0.00077 25.3 0.6 12 43-54 182-193 (216)
12 d1u6ma_ d.108.1.1 (A:) Putativ 22.1 25 0.0018 21.7 2.3 26 114-139 160-185 (189)
13 g1k3b.1 d.3.1.1 (B:,C:) Cathep 21.4 12 0.00088 25.0 0.6 12 43-54 200-211 (233)
14 d1o0ea_ d.3.1.1 (A:) Ervatamin 21.4 12 0.00088 24.7 0.6 12 43-54 176-187 (208)
15 d1u6la_ d.32.1.7 (A:) Hypothet 20.7 13 0.00096 23.3 0.7 19 41-59 110-129 (137)
16 d1m6da_ d.3.1.1 (A:) Cathepsin 20.5 13 0.00094 24.9 0.6 12 43-54 184-195 (214)
17 d2oula1 d.3.1.1 (A:-16-224) Fa 20.5 13 0.00093 25.6 0.6 15 43-57 207-221 (241)
No 1
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}
Probab=40.54 E-value=4.6 Score=28.60 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=12.9
Q ss_pred CceeeCCCCCcCCCCc
Q 046989 1 LIHFYPSGGHSCLRDS 16 (146)
Q Consensus 1 ~~~~~~GGGHsC~~~S 16 (146)
+++||||-||+...-|
T Consensus 62 v~AyIPG~GhnlqEHs 77 (118)
T d2uubl1 62 VTAYIPGEGHNLQEHS 77 (118)
T ss_dssp EEEECCSSCCCCCTTC
T ss_pred EEEEcCCCCcCcccCC
Confidence 4799999999986544
No 2
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.57 E-value=25 Score=24.57 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=32.5
Q ss_pred HhhhhhhhHHHHHHHHhhcCCCCCCCCCccccccCCCCCCCCc-ccccchhhHHH
Q 046989 66 AEHFRNSQFVESILDVYRELPPVSGPSLTHQTRFDPARVCSPI-LEDGRNGLFQR 119 (146)
Q Consensus 66 ~~Hf~N~r~veSiLd~YWElPPvA~PsLT~QtryDPARt~~Pi-~~dg~~~lF~~ 119 (146)
..+|+|.-.++|+|+-.==+=|.|.+ |=|-+|| +.||+-+=||+
T Consensus 52 ~k~~qn~s~I~snLk~l~pcLP~At~----------~pt~~pI~I~~~d~~DFr~ 96 (112)
T d1jlia_ 52 VKHLENASAIESILKNLLPCLPLATA----------APTRHPIHIKDGDWNEFRR 96 (112)
T ss_dssp HHHSTTCHHHHHHHHHHGGGSCCTTS----------SCCSCCCCCCSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHhccCcCccCCC----------CCCCCCeeeccCCHHHHHH
Confidence 57889999999999965444454443 3345788 78999999985
No 3
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=32.40 E-value=9.3 Score=24.64 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhc
Q 046989 23 AKRKKFWEKAVD 34 (146)
Q Consensus 23 ~~Rkk~WEkAvd 34 (146)
..|++||+++++
T Consensus 60 ~~Rr~fw~~~~~ 71 (102)
T d1pjqa3 60 GERRRFWEKFFV 71 (102)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 368899999985
No 4
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.39 E-value=5.7 Score=26.52 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=11.8
Q ss_pred CCCcccccceeeccCC
Q 046989 41 VGETGWGVKEEMRGNF 56 (146)
Q Consensus 41 ~~~~WWGvrG~mRDnF 56 (146)
+=|++||..|++|=-.
T Consensus 185 SWG~~WG~~Gy~~i~~ 200 (217)
T d2h7ja1 185 SWGHNFGEEGYIRMAR 200 (217)
T ss_dssp SBCTTSTBTTEEEEEC
T ss_pred CCCCCcccCCEEEEec
Confidence 3478899999987433
No 5
>d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=29.42 E-value=12 Score=23.15 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=34.8
Q ss_pred hhhhhhh----HHHHHHHHhhcCCCCCCCCCccccccCCCCCCCCcccccchhhHHHhhccccccccc----cceeeEEE
Q 046989 67 EHFRNSQ----FVESILDVYRELPPVSGPSLTHQTRFDPARVCSPILEDGRNGLFQRLRLARLETSVF----NGYTQMVY 138 (146)
Q Consensus 67 ~Hf~N~r----~veSiLd~YWElPPvA~PsLT~QtryDPARt~~Pi~~dg~~~lF~~lGL~~l~~~vF----n~YtQM~Y 138 (146)
.++++.+ +++.+++..-+.+-...-.|+- .+.-..+|+|+|+..+-++.| -.|.+|.|
T Consensus 99 p~~rg~GiG~~Ll~~~~~~~~~~~~~~~i~l~~--------------~~~ai~fY~k~GF~~~G~~~~~~g~~~~~~m~~ 164 (166)
T d1cjwa_ 99 RSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMC--------------EDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHC 164 (166)
T ss_dssp TTSTTSSHHHHHHHHHHHHHHTSTTCCEEEEEE--------------CGGGHHHHHTTTEEEEEECSCCBTTBCCEEEEE
T ss_pred HHHccCCHHHHHHHHHHHHHHHhCCCceEEEec--------------CHHHHHHHHHCCCEEEcceeeEECCEEEEEEEE
Confidence 3455544 5666666666654333323321 112345999999999976655 36888886
No 6
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.15 E-value=8 Score=26.00 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.0
Q ss_pred CcccccceeeccCCCC
Q 046989 43 ETGWGVKEEMRGNFNH 58 (146)
Q Consensus 43 ~~WWGvrG~mRDnFnh 58 (146)
|+.||-.|++|=-.+.
T Consensus 185 G~~WGe~Gy~~i~~~~ 200 (215)
T d2r6na1 185 GENWGNKGYILMARNK 200 (215)
T ss_dssp CTTSTBTTEEEEESSS
T ss_pred CCCcccCCeEEEEeCC
Confidence 6789999999854443
No 7
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}
Probab=26.99 E-value=8.1 Score=25.87 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.2
Q ss_pred CCcccccceeeccCC
Q 046989 42 GETGWGVKEEMRGNF 56 (146)
Q Consensus 42 ~~~WWGvrG~mRDnF 56 (146)
=|+.||..|++|=..
T Consensus 185 WG~~WG~~Gy~~i~~ 199 (224)
T d1s4va_ 185 WGPEWGEKGYIRMER 199 (224)
T ss_dssp BCTTSTBTTEEEEEC
T ss_pred CCCccccCceEEEEC
Confidence 367799999987543
No 8
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.22 E-value=9 Score=26.90 Aligned_cols=12 Identities=25% Similarity=0.474 Sum_probs=9.8
Q ss_pred Ccccccceeecc
Q 046989 43 ETGWGVKEEMRG 54 (146)
Q Consensus 43 ~~WWGvrG~mRD 54 (146)
|+.||..|++|=
T Consensus 236 G~~WGd~Gyf~I 247 (275)
T d1deua_ 236 GEPWGERGWLRI 247 (275)
T ss_dssp CTTSTBTTEEEE
T ss_pred CCCcccCCEEEE
Confidence 567999999983
No 9
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Probab=24.20 E-value=11 Score=25.18 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.9
Q ss_pred ccccccCCCCCCCC
Q 046989 94 THQTRFDPARVCSP 107 (146)
Q Consensus 94 T~QtryDPARt~~P 107 (146)
-..=-|||.|++.=
T Consensus 47 V~~IeYDPnRSa~I 60 (95)
T d2zjra2 47 VAAIEYDPNRSARI 60 (95)
T ss_dssp EEEEECCTTTSSCE
T ss_pred EEEEEEcCCCCEEE
Confidence 34456999998753
No 10
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}
Probab=23.97 E-value=12 Score=23.45 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=10.1
Q ss_pred ccccccCCCCCCCC
Q 046989 94 THQTRFDPARVCSP 107 (146)
Q Consensus 94 T~QtryDPARt~~P 107 (146)
-..--|||.|+..=
T Consensus 17 V~~IEYDPnRsA~I 30 (64)
T d2qamc2 17 VERLEYDPNRSANI 30 (64)
T ss_dssp CCCCCCCSSSSSCC
T ss_pred EEEEEeCCCCCceE
Confidence 34567999998753
No 11
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}
Probab=23.29 E-value=11 Score=25.29 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=9.7
Q ss_pred Ccccccceeecc
Q 046989 43 ETGWGVKEEMRG 54 (146)
Q Consensus 43 ~~WWGvrG~mRD 54 (146)
|+.||..|++|=
T Consensus 182 G~~WGd~Gy~~i 193 (216)
T d1ppoa_ 182 GTAWGEKGYIRI 193 (216)
T ss_dssp CSSSTBTTEEEE
T ss_pred CCCcccCCEEEE
Confidence 677999999863
No 12
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]}
Probab=22.13 E-value=25 Score=21.68 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=20.8
Q ss_pred hhhHHHhhccccccccccceeeEEEE
Q 046989 114 NGLFQRLRLARLETSVFNGYTQMVYL 139 (146)
Q Consensus 114 ~~lF~~lGL~~l~~~vFn~YtQM~Y~ 139 (146)
..+|+++|+..+.+..++++..-.++
T Consensus 160 ~~~Yek~GF~~~~~~~~~~~~~~~m~ 185 (189)
T d1u6ma_ 160 RKLYASKGFKDVTTMTISGHLYNHMQ 185 (189)
T ss_dssp HHHHHTTTCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHCCCEEEEEEEECCcEEeeEE
Confidence 46899999999999988888654444
No 13
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.37 E-value=12 Score=25.02 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=9.3
Q ss_pred Ccccccceeecc
Q 046989 43 ETGWGVKEEMRG 54 (146)
Q Consensus 43 ~~WWGvrG~mRD 54 (146)
|+.||-.|+||=
T Consensus 200 G~~WG~~Gy~~i 211 (233)
T g1k3b.1 200 GTGWGENGYFRI 211 (233)
T ss_dssp CTTSTBTTEEEE
T ss_pred CCCcCCCcEEEE
Confidence 456999999873
No 14
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}
Probab=21.36 E-value=12 Score=24.73 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=9.9
Q ss_pred Ccccccceeecc
Q 046989 43 ETGWGVKEEMRG 54 (146)
Q Consensus 43 ~~WWGvrG~mRD 54 (146)
|+.||-.|+++=
T Consensus 176 G~~WGd~Gy~~I 187 (208)
T d1o0ea_ 176 GRYWGEKGYIRM 187 (208)
T ss_dssp CTTSTBTTEEEE
T ss_pred CCCcccCCeEEE
Confidence 678999999873
No 15
>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.74 E-value=13 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.5
Q ss_pred CCCcccccc-eeeccCCCCC
Q 046989 41 VGETGWGVK-EEMRGNFNHS 59 (146)
Q Consensus 41 ~~~~WWGvr-G~mRDnFnhs 59 (146)
+...=||-| |+.+|.|+++
T Consensus 110 ~~~~~wG~~~g~v~Dp~G~~ 129 (137)
T d1u6la_ 110 LGPTFWAASFGMFTDRFGVA 129 (137)
T ss_dssp EEEETTEEEEEEEECTTSCE
T ss_pred ccccCCCcEEEEEECCCCCE
Confidence 445679987 9999999985
No 16
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.48 E-value=13 Score=24.87 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=9.5
Q ss_pred Ccccccceeecc
Q 046989 43 ETGWGVKEEMRG 54 (146)
Q Consensus 43 ~~WWGvrG~mRD 54 (146)
|+.||-+|++|=
T Consensus 184 G~~WGd~Gy~~i 195 (214)
T d1m6da_ 184 GTDWGEKGYYYL 195 (214)
T ss_dssp CTTSTBTTEEEE
T ss_pred CCccccCCEEEE
Confidence 566999999864
No 17
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}
Probab=20.48 E-value=13 Score=25.62 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=11.0
Q ss_pred CcccccceeeccCCC
Q 046989 43 ETGWGVKEEMRGNFN 57 (146)
Q Consensus 43 ~~WWGvrG~mRDnFn 57 (146)
|+.||..|++|=.-+
T Consensus 207 G~~WG~~Gy~~i~~~ 221 (241)
T d2oula1 207 GQQWGERGFINIETD 221 (241)
T ss_dssp CTTSTBTTEEEEEEC
T ss_pred CCCcccCCEEEEEcC
Confidence 577999999874433
Done!