BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046991
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 15/227 (6%)
Query: 42 VTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP 101
V+ + + ++LKDV+ E G+I + G +G+GKTTLL+ILAG +++ +G++ ++ P
Sbjct: 17 VSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSP 73
Query: 102 MDAEHFRRISGYVTQDDALFPL-LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD 160
D R+ GYV Q+ + + TVEE + S L + + R++ +L+ +GL
Sbjct: 74 ADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELVGLS 131
Query: 161 HVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKS 220
+A +++R +I L D + +DEP S LD S + +L+S
Sbjct: 132 GLA------AADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLES 185
Query: 221 MVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
+ N+GK IIL H+ L+ D ++ +SNG + G+ ER
Sbjct: 186 L-KNEGKGIILVTHE--LEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-DAEHFRR 109
+ KD++ + GE GPSG GK+TLL ++AG + SG L + ++ M D R
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAER 75
Query: 110 ISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXX 169
G V Q AL+P L+V E + S L+L +++ RV + + L L H+
Sbjct: 76 GVGMVFQSYALYPHLSVAENM--SFGLKLAGAKKEVINQRVNQVAEVLQLAHL------L 127
Query: 170 XXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTI 229
+R+R +IG LV +P+V L+DEP S LD+A + + + + G+T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 230 ILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
I H + L D++V+L G V G
Sbjct: 188 IYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-DAEHFRR 109
+ KD++ + GE GPSG GK+TLL ++AG + SG L + ++ M D R
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAER 75
Query: 110 ISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXX 169
G V Q AL+P L+V E + S L+L +++ RV + + L L H+
Sbjct: 76 GVGMVFQSYALYPHLSVAENM--SFGLKLAGAKKEVINQRVNQVAEVLQLAHL------L 127
Query: 170 XXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTI 229
+R+R +IG LV +P+V L+DEP S LD+A + + + + G+T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 230 ILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
I H + L D++V+L G V G
Sbjct: 188 IYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-DAEHFRR 109
+ KD++ + GE GPSG GK+TLL ++AG + SG L + ++ M D R
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAER 75
Query: 110 ISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXX 169
G V Q AL+P L+V E + S L+L +++ RV + + L L H+
Sbjct: 76 GVGMVFQSYALYPHLSVAENM--SFGLKLAGAKKEVINQRVNQVAEVLQLAHL------L 127
Query: 170 XXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTI 229
+R+R +IG LV +P+V L+D+P S LD+A + + + + G+T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 230 ILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
I H + L D++V+L G V G
Sbjct: 188 IYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE----- 105
+LK ++ R GE+ + GPSG+GK+T L L + G+++++ + A+
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 106 HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXX 165
R G V Q LFP +TV + A +++ R++A ++ LL ++GL A
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMELLDKVGLKDKA-- 132
Query: 166 XXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ 225
+ +R +I L +P ++L DEPTS LD V++++K + N+
Sbjct: 133 ----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL-ANE 187
Query: 226 GKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
G T+++ H+ GF E+ DR++ + G+++ G L +R
Sbjct: 188 GMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE----- 105
+LK ++ R GE+ + GPSG+GK+T L L + G+++++ + A+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 106 HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXX 165
R G V Q LFP +TV + A +++ R++A ++ LL ++GL A
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMELLDKVGLKDKA-- 153
Query: 166 XXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ 225
+ +R +I L +P ++L DEPTS LD V++++K + N+
Sbjct: 154 ----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL-ANE 208
Query: 226 GKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
G T+++ H+ GF E+ DR++ + G+++ G L +R
Sbjct: 209 GMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 30/265 (11%)
Query: 31 KFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
K +E N+ Y D LK ++ + GE+TAI G +G GK+TL + G + +
Sbjct: 9 KVEELNYNYS------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL--KP 60
Query: 91 VSGKLLVNDRPMDAEH-----FRRISGYVTQD--DALFPLLTVEETLMCSALLRLTAGRR 143
SG++L +++P+D R G V QD + LF ++ + ++L
Sbjct: 61 SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP---E 117
Query: 144 KQAASRVRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPT 203
+ RV LK G++H+ +++R +I LV +P V+++DEPT
Sbjct: 118 DEIRKRVDNALKRTGIEHLKDKPTHCLSFG------QKKRVAIAGVLVMEPKVLILDEPT 171
Query: 204 SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF-DRLVLLSNGFVVHNGTLN 262
+GLD ++ LL M G TII+ H I+ L+ D + ++ G V+ G
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 263 HL---EERLKSAGHCIPRHVNVLEF 284
+ +E ++ +PR +++E
Sbjct: 230 EVFAEKEVIRKVNLRLPRIGHLMEI 254
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 22/219 (10%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR------PMDAE 105
L +++ + + GE A+ GPSG+GK+TLL +AG + SGK+ +++ P D
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG--IYKPTSGKIYFDEKDVTELPPKD-- 74
Query: 106 HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXX 165
R G V Q+ AL+P +TV + + L L R++ +VR + K L +D +
Sbjct: 75 ---RNVGLVFQNWALYPHMTVYKNIAFP--LELRKAPREEIDKKVREVAKMLHIDKL--- 126
Query: 166 XXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ 225
+++R +I LV +P V+L+DEP S LD+ L V LK +
Sbjct: 127 ---LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183
Query: 226 GKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
G T + H L + DR+ ++ G ++ GT + +
Sbjct: 184 GITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 27/231 (11%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND---RPMDAEH 106
+ LK+V+ + GE +I GPSG+GK+T+L I+ + G++ +++ +D +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEGEVYIDNIKTNDLDDDE 76
Query: 107 FRRIS----GYVTQDDALFPLLTVEETLMCSALLRLTAG-----RRKQAASRVR-GLLKE 156
+I G+V Q L PLLT E + + + RRK+A ++ L+E
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 157 LGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT 216
+H +++R +I L ++P ++L D+PT LDS + ++
Sbjct: 137 RFANH----------KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
LLK + GKT+++ H + +R++ L +G V L ++R
Sbjct: 187 LLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 24/229 (10%)
Query: 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVS--GKLLVNDRPMDA 104
K ILK +S E GEI + GP+GAGKTT L I++ K SS V+ GK +V +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE----EP 83
Query: 105 EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAX 164
R++ Y+ ++ + + LR AG ++S + +++ +A
Sbjct: 84 HEVRKLISYLPEEAGAY------RNMQGIEYLRFVAGFYASSSSEIEEMVER--ATEIAG 135
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
R+ I L+ +P + ++DEPTSGLD +A V +LK
Sbjct: 136 LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQ 194
Query: 225 QGKTIILTIHQPGFRILE---LFDRLVLLSNGFVVHNGTLNHLEERLKS 270
+G TI+++ H +LE L DR+ L+ NG +V GT+ L+ER K+
Sbjct: 195 EGLTILVSSHN----MLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 27/231 (11%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND---RPMDAEH 106
+ LK+V+ + GE +I GPSG+GK+T L I+ + G++ +++ +D +
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIG--CLDKPTEGEVYIDNIKTNDLDDDE 76
Query: 107 FRRIS----GYVTQDDALFPLLTVEETLMCSALLRLTAG-----RRKQAASRVR-GLLKE 156
+I G+V Q L PLLT E + + + RRK+A ++ L+E
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE 136
Query: 157 LGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT 216
+H +++R +I L ++P ++L DEPT LDS + +
Sbjct: 137 RFANH----------KPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQ 186
Query: 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
LLK + GKT+++ H + +R++ L +G V L ++R
Sbjct: 187 LLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 27/231 (11%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND---RPMDAEH 106
+ LK+V+ + GE +I GPSG+GK+T+L I+ + G++ +++ +D +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEGEVYIDNIKTNDLDDDE 76
Query: 107 FRRIS----GYVTQDDALFPLLTVEETLMCSALLRLTAG-----RRKQAASRVR-GLLKE 156
+I G+V Q L PLLT E + + + RRK+A ++ L+E
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 157 LGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT 216
+H +++R +I L ++P ++L D+PT LDS + ++
Sbjct: 137 RFANH----------KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
LLK + GKT+++ H + +R++ L +G V L ++R
Sbjct: 187 LLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRI 110
ILK +S + GE +I G SG+GK+TLL IL + GK+ + + +D + + +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 111 S-------GYVTQDDALFPLLTVEETLMCSALLRLTAGR-RKQAASRVRGLLKELGLDHV 162
S G+V Q L P LT E ++ L G+ +K+A R LL ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLGD- 132
Query: 163 AXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMV 222
E++R +I L ++P ++ DEPT LDSA+ V+ + +
Sbjct: 133 -----KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF--LK 185
Query: 223 VNQGKT-IILTIHQPGFRILELFDRLVLLSNGFVV 256
+N+G T I++ H+ + EL R + + +G VV
Sbjct: 186 INEGGTSIVMVTHER--ELAELTHRTLEMKDGKVV 218
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 12/217 (5%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV-NDRPMDAEHFRRI 110
++ VS + R GE+ + GPSG+GKTT+L ++AG R G + + R D +R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG--LERPTKGDVWIGGKRVTDLPPQKRN 88
Query: 111 SGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXX 170
G V Q+ ALF +TV + + S LR + + +RVR LL+ + L+ A
Sbjct: 89 VGLVFQNYALFQHMTVYDNV--SFGLREKRVPKDEMDARVRELLRFMRLESYA------N 140
Query: 171 XXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTII 230
+++R ++ L P V+L DEP + +D+ + T ++ + G T +
Sbjct: 141 RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200
Query: 231 LTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
H LE+ DR+++L G V GT + E+
Sbjct: 201 FVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 24/227 (10%)
Query: 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-- 104
D + IL+D+S EA+P I A AGPSG GK+T+ +L + + +G++ ++ +P+D
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNIS 70
Query: 105 -EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQ------AASRVRGLLKEL 157
E++R G+V+QD A+ T+ E L T Q A S V + +L
Sbjct: 71 LENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL 129
Query: 158 GLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTL 217
+ +R+R +I + +P ++++DE T+ LDS S V
Sbjct: 130 NTE--------VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 218 LKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
L S++ +G+T ++ H+ + D++ + G + +G N L
Sbjct: 182 LDSLM--KGRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNEL 224
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 55 VSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVS-GKLLVNDRPMDAEHFRRIS 111
VS E + GE A+ GPSG GKTT L +LAG K +S ++ +LVND P +R +
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP---PKYREV- 77
Query: 112 GYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXX 171
G V Q+ AL+P +TV E + LR + + RV + ++L +D++
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNL------LDR 129
Query: 172 XXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIIL 231
+++R ++ LV P V+L DEP S LD+ + + +K + G T +
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189
Query: 232 TIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS 270
H + + R+ + + G +V GT + + + K+
Sbjct: 190 VTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAG-KISSRKVSGKLLVNDRPM-DAEHF-- 107
++++S E + GE + GPSG GKTT L ++AG + SR G++ + D+ + D E
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGIF 75
Query: 108 ----RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA 163
R V Q AL+P +TV + + LR R++ RVR + + LGL +
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVP--RQEIDQRVREVAELLGLTEL- 132
Query: 164 XXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223
+R+R ++G +V P V L+DEP S LD+ + + LK +
Sbjct: 133 -----LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 224 NQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
G T I H + + DR+ +++ G + G+ + + ++
Sbjct: 188 QLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 29/232 (12%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG-KISSRKVSGKLLVNDR--- 100
KK L +V+ GE I GPSGAGKTT + I+AG + S +G+L +DR
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 101 --------PMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRG 152
P D R+I G V Q AL+P LT E + L +++ RV
Sbjct: 71 SNGKLIVPPED----RKI-GMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKRVEE 123
Query: 153 LLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASAL 212
+ K L + HV +++R ++ LV DP+++L+DEP S LD+
Sbjct: 124 VAKILDIHHV------LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 213 HVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
L+K + G T+++ H P I + DR+ +L G +V G L
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 29/232 (12%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG-KISSRKVSGKLLVNDR--- 100
KK L +V+ GE I GPSGAGKTT + I+AG + S +G+L +DR
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 101 --------PMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRG 152
P D R+I G V Q AL+P LT E + L +++ RV
Sbjct: 71 SNGKLIVPPED----RKI-GMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKRVEE 123
Query: 153 LLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASAL 212
+ K L + HV +++R ++ LV DP+++L+DEP S LD+
Sbjct: 124 VAKILDIHHV------LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 213 HVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
L+K + G T+++ H P I + DR+ +L G +V G L
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFR 108
K L++VS GE +AG +G+GK+TLL+I+AG I SG +L + R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIR 77
Query: 109 RISGYVTQ--DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXX 166
R G Q +D F +E + A+ R V+ ++ +GLD +
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDE--VAFAVKNFYPDR--DPVPLVKKAMEFVGLDFDS--- 130
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLD---SASALHVVTLLKSMVV 223
E+RR +I +VH+P ++++DEP GLD L +V K++
Sbjct: 131 -FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-- 187
Query: 224 NQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260
GKT+IL H ++ DR+V+L G V +GT
Sbjct: 188 --GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGT 221
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFR 108
K L++VS GE +AG +G+GK+TLL+I+AG I SG +L + R
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIR 79
Query: 109 RISGYVTQ--DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXX 166
R G Q +D F +E + A+ R V+ ++ +GLD +
Sbjct: 80 RNIGIAFQYPEDQFFAERVFDE--VAFAVKNFYPDR--DPVPLVKKAMEFVGLDFDS--- 132
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLD---SASALHVVTLLKSMVV 223
E+RR +I +VH+P ++++DEP GLD L +V K++
Sbjct: 133 -FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-- 189
Query: 224 NQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260
GKT+IL H ++ DR+V+L G V +GT
Sbjct: 190 --GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGT 223
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 19/221 (8%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND---RPMDAEHF 107
ILK +S PG+ A+ GPSG GK+T++ +L + + G++ ++ + ++ EH
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEIKTLNPEHT 1151
Query: 108 RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAA--SRVRGLLKEL--GLDHVA 163
R V+Q+ LF E + +T + ++AA + + + EL G +
Sbjct: 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE--- 1208
Query: 164 XXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223
+++R +I LV +P ++L+DE TS LD+ S V L
Sbjct: 1209 ---TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR--A 1263
Query: 224 NQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
+G+T I+ H+ + D + ++SNG ++ GT L
Sbjct: 1264 REGRTCIVIAHR--LNTVMNADCIAVVSNGTIIEKGTHTQL 1302
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 29/220 (13%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLL-------EILAGKISSRKVSGKLLVNDRPMD 103
IL+ ++ G+ A+ G SG GK+T++ ++L GKI+ + G V+ R ++
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDG---VDVRDIN 486
Query: 104 AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAA----SRVRGLLKELGL 159
E R+ V+Q+ ALF T+EE + +L + R + A + +K L
Sbjct: 487 LEFLRKNVAVVSQEPALFN-CTIEENI---SLGKEGITREEMVAACKMANAEKFIKTLPN 542
Query: 160 DHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLK 219
+ +++R +I LV +P ++L+DE TS LD+ S V L
Sbjct: 543 GY----NTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD 598
Query: 220 SMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
+G+T I+ H+ + D ++ NG VV G
Sbjct: 599 KAA--KGRTTIIIAHR--LSTIRNADLIISCKNGQVVEVG 634
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 17/226 (7%)
Query: 44 SKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG-KISSRKVSGKLLVNDRPM 102
S+K F L ++S + GE I GP+GAGKT LE++AG + SG++L++ + +
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 103 -DAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH 161
D + +V Q+ +LFP + V++ L +R+ ++ + RV ++L ++H
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG--MRM---KKIKDPKRVLDTARDLKIEH 119
Query: 162 VAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSM 221
+ E++R ++ LV +P ++L+DEP S LD + + +L S+
Sbjct: 120 L------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML-SV 172
Query: 222 VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
+ + K +L I + DR+ ++ +G ++ G + E+
Sbjct: 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 18/220 (8%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-DAEH---- 106
+KD+S E + GE + GPSG GKTT L +AG G++ + D + D E
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG--LEEPTRGQIYIEDNLVADPEKGVFV 79
Query: 107 --FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAX 164
R V Q AL+P TV + + LR +++ RVR + + LGL +
Sbjct: 80 PPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVP--KQEIDKRVREVAEXLGLTEL-- 135
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
+R+R ++G ++ P V L DEP S LD+ + LK +
Sbjct: 136 ----LNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ 191
Query: 225 QGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
G T I H DR+ + + G + GT + +
Sbjct: 192 LGVTTIYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 14/218 (6%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKV--SGKLLVNDRPMDAEH 106
+L D+S PGEI I G SG GKTTLL LAG + S ++ SGK + +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 107 FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXX 166
RR+ GY+ Q+ LFP LTV + L GR Q R+ +L+ G+ +A
Sbjct: 79 ERRL-GYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLELTGISELAGRY 135
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQG 226
A++ L DP ++L+DEP S LD + + + + G
Sbjct: 136 PHELSGGQQQR------AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189
Query: 227 KTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
K+ + H L+ DR+ ++ G ++ + + L
Sbjct: 190 KSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 31 KFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
+F + ++ Y + +L+ ++ RPGE+TA+ GP+G+GK+T+ +L +
Sbjct: 16 QFQDVSFAY----PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY--QP 69
Query: 91 VSGKLLVNDRPMDA-EH--FRRISGYVTQDDALFPLLTVEETL-----MCSALLRLTAGR 142
G+LL++ +P+ EH R V Q+ +F +++E + + +TA
Sbjct: 70 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKPTMEEITAAA 128
Query: 143 RKQAA-SRVRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDE 201
K A S + GL + G D +R+ ++ L+ P V+++D+
Sbjct: 129 VKSGAHSFISGLPQ--GYD------TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDD 180
Query: 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTL 261
TS LD+ S L V LL ++++L ++E D ++ L G + GT
Sbjct: 181 ATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTH 238
Query: 262 NHLEER 267
L E+
Sbjct: 239 QQLMEK 244
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM------DAE 105
L +VS G+I + G SGAGK+TL+ + + R G +LV+ + + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELT 78
Query: 106 HFRRISGYVTQDDALFPLLTVEETLMCSAL-LRLTAGRRKQAASRVRGLLKELGLDHVAX 164
RR G + Q F LL+ AL L L + + RV LL +GL
Sbjct: 79 KARRQIGMIFQH---FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD--- 132
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
+++R +I L +P V+L DE TS LD A+ ++ LLK +
Sbjct: 133 ---KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 225 QGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
G TI+L H+ + + D + ++SNG ++ T++ +
Sbjct: 190 LGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEV 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G SG+GK+TL +++ +G++L++ +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 69
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 125
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ DE TS LD
Sbjct: 126 REGYNTIVGEQGAGLSGG------------QRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ H+ ++ DR++++ G +V G L
Sbjct: 174 SE-HVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G SG+GK+TL +++ +G++L++ +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 75
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 131
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ DE TS LD
Sbjct: 132 REGYNTIVGEQGAGLSGG------------QRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ H+ ++ DR++++ G +V G L
Sbjct: 180 SE-HVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 20/231 (8%)
Query: 34 EFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSR-- 89
EF V+ S D + L+DVS PG+ A+ GPSGAGK+T+L +L ISS
Sbjct: 55 EFENVHF---SYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 90 KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRK-QAAS 148
++ G+ + + R G V QD LF T+ + + R+TAG + +AA+
Sbjct: 112 RIDGQDISQ---VTQASLRSHIGVVPQDTVLFN-DTIADNIRYG---RVTAGNDEVEAAA 164
Query: 149 RVRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDS 208
+ G+ + + E++R +I ++ P ++L+DE TS LD+
Sbjct: 165 QAAGIHDAI-MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223
Query: 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
++ + L + N +T I+ H+ + D+++++ +G +V G
Sbjct: 224 SNERAIQASLAKVCAN--RTTIVVAHR--LSTVVNADQILVIKDGCIVERG 270
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G SG+GK+TL +++ +G++L++ +
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 71
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 127
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ DE TS LD
Sbjct: 128 REGYNTIVG------------EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ H+ ++ DR++++ G +V G L
Sbjct: 176 SE-HVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM------DAE 105
L +VS G+I + G SGAGK+TL+ + + R G +LV+ + + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELT 101
Query: 106 HFRRISGYVTQDDALFPLLTVEETLMCSAL-LRLTAGRRKQAASRVRGLLKELGLDHVAX 164
RR G + Q F LL+ AL L L + + RV LL +GL
Sbjct: 102 KARRQIGXIFQH---FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL----- 153
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
+++R +I L +P V+L D+ TS LD A+ ++ LLK +
Sbjct: 154 -GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 225 QGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
G TI+L H+ + + D + ++SNG ++ T++ +
Sbjct: 213 LGLTILLITHEXDV-VKRICDCVAVISNGELIEQDTVSEV 251
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM------DAE 105
L +VS G+I + G SGAGK+TL+ + + R G +LV+ + + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELT 101
Query: 106 HFRRISGYVTQDDALFPLLTVEETLMCSAL-LRLTAGRRKQAASRVRGLLKELGLDHVAX 164
RR G + Q F LL+ AL L L + + RV LL +GL
Sbjct: 102 KARRQIGMIFQH---FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL----- 153
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
+++R +I L +P V+L D+ TS LD A+ ++ LLK +
Sbjct: 154 -GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 225 QGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
G TI+L H+ + + D + ++SNG ++ T++ +
Sbjct: 213 LGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEV 251
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 21/205 (10%)
Query: 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFR 108
F+ + ++ + G+I A+ G +G GK+TLL++L G R + GK+ E ++
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG--IHRPIQGKI---------EVYQ 66
Query: 109 RISGYVTQD-DALFPLLTVEETLMCSALLRLTAGRRKQAASRVR-GLLKELGLDHVAXXX 166
I G+V Q + F ++ LM + T + K +V L L L H+A
Sbjct: 67 SI-GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQG 226
+R+ I + + ++L+DEPTS LD A+ V++LL + +Q
Sbjct: 126 FTSLSGG------QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179
Query: 227 KTIILTIHQPGFRILELFDRLVLLS 251
T++ T HQP +++ + ++ +LL+
Sbjct: 180 MTVVFTTHQPN-QVVAIANKTLLLN 203
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G SG+GK+TL +++ +G++L++ +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 75
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 131
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ D+ TS LD
Sbjct: 132 REGYNTIVGEQGAG------------LSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ H+ ++ DR++++ G +V G L
Sbjct: 180 SE-HVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 40/273 (14%)
Query: 7 APVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITA 66
+P+SGS L L K L KF + ++ Y + + +L+ ++ PG++TA
Sbjct: 2 SPLSGS---LAPLNMKGLV-----KFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTA 49
Query: 67 IAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM---DAEHFRRISGYVTQDDALFPL 123
+ GP+G+GK+T+ +L + GK+L++ P+ D + V Q+ LF
Sbjct: 50 LVGPNGSGKSTVAALLQNLY--QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 124 ---------LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXXX 174
LT T+ + + +G + +G E+G
Sbjct: 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG------------ETGN 155
Query: 175 XXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234
+R+ ++ L+ P ++++D+ TS LD+ + L V LL +T++L H
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
Query: 235 QPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
Q + E ++ L G V GT L ER
Sbjct: 216 Q--LSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G +G+GK+TL +++ +G++L++ +
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 71
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 127
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ DE TS LD
Sbjct: 128 REGYNTIVG------------EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ H+ ++ DR++++ G +V G L
Sbjct: 176 SE-HVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 38/246 (15%)
Query: 34 EFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEI-------LAGKI 86
EF ++ S+K+ + ILK ++ + + G+ A+ G SG GK+T +++ L G +
Sbjct: 389 EFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 87 SSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQA 146
S + G+ + R ++ + R I G V+Q+ LF E + GR
Sbjct: 448 S---IDGQDI---RTINVRYLREIIGVVSQEPVLFATTIAE---------NIRYGREDVT 492
Query: 147 ASRVRGLLKE-------LGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLI 199
+ +KE + L H +++R +I LV +P ++L+
Sbjct: 493 MDEIEKAVKEANAYDFIMKLPH--QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLL 550
Query: 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
DE TS LD+ S V L +G+T I+ H+ + D + G +V G
Sbjct: 551 DEATSALDTESEAVVQAALDK--AREGRTTIVIAHR--LSTVRNADVIAGFDGGVIVEQG 606
Query: 260 TLNHLE 265
NH E
Sbjct: 607 --NHDE 610
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 33/228 (14%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEIL-------AGKISSRKVSGKLLVNDRPMD 103
+L+ +S E + G+ A+ G SG GK+T++++L AG + + GK + + ++
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF---LDGKEI---KQLN 1101
Query: 104 AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAAS--RVRGLLKELGLDH 161
+ R G V+Q+ LF CS + G + S + KE +
Sbjct: 1102 VQWLRAQLGIVSQEPILFD---------CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 162 VAXX-----XXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT 216
+++R +I LV P ++L+DE TS LD+ S V
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
L +G+T I+ H+ ++ D +V++ NG V +GT L
Sbjct: 1213 ALDK--AREGRTCIVIAHR--LSTIQNADLIVVIQNGKVKEHGTHQQL 1256
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 38/246 (15%)
Query: 34 EFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEI-------LAGKI 86
EF ++ S+K+ + ILK ++ + + G+ A+ G SG GK+T +++ L G +
Sbjct: 389 EFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 87 SSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQA 146
S + G+ + R ++ + R I G V+Q+ LF E + GR
Sbjct: 448 S---IDGQDI---RTINVRYLREIIGVVSQEPVLFATTIAE---------NIRYGREDVT 492
Query: 147 ASRVRGLLKE-------LGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLI 199
+ +KE + L H +++R +I LV +P ++L+
Sbjct: 493 MDEIEKAVKEANAYDFIMKLPH--QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLL 550
Query: 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
DE TS LD+ S V L +G+T I+ H+ + D + G +V G
Sbjct: 551 DEATSALDTESEAVVQAALDK--AREGRTTIVIAHR--LSTVRNADVIAGFDGGVIVEQG 606
Query: 260 TLNHLE 265
NH E
Sbjct: 607 --NHDE 610
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 33/228 (14%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEIL-------AGKISSRKVSGKLLVNDRPMD 103
+L+ +S E + G+ A+ G SG GK+T++++L AG + + GK + + ++
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF---LDGKEI---KQLN 1101
Query: 104 AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAAS--RVRGLLKELGLDH 161
+ R G V+Q+ LF CS + G + S + KE +
Sbjct: 1102 VQWLRAQLGIVSQEPILFD---------CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 162 VAXX-----XXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT 216
+++R +I LV P ++L+DE TS LD+ S V
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
L +G+T I+ H+ ++ D +V++ NG V +GT L
Sbjct: 1213 ALDK--AREGRTCIVIAHR--LSTIQNADLIVVIQNGKVKEHGTHQQL 1256
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 26/242 (10%)
Query: 34 EFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93
EF V+ KK +LKD++ +PG+ A+ GP+G+GKTT++ +L + G
Sbjct: 356 EFKNVWFSYDKKKP---VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR--G 410
Query: 94 KLLVND---RPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRV 150
++LV+ R + R G V QD LF TV+E L G +
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKY--------GNPGATDEEI 461
Query: 151 RGLLKELGLDHVAXX-----XXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSG 205
+ K DH +R+ +I + +P ++++DE TS
Sbjct: 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Query: 206 LDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265
+D+ + + + ++ +GKT I+ H+ ++ D +++L +G +V G + L
Sbjct: 522 VDTKTEKSIQAAMWKLM--EGKTSIIIAHR--LNTIKNADLIIVLRDGEIVEMGKHDELI 577
Query: 266 ER 267
++
Sbjct: 578 QK 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 13/227 (5%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV---NDRPMDAEHF 107
ILKD++ GE A G SG GK+TL+ ++ SG++L+ N +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSL 413
Query: 108 RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXX 167
R G V QD+ LF TV+E ++ R TA + + + ++
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENILLG---RPTATDEEVVEAAKMANAHDFIMNLPQGYDT 469
Query: 168 XXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGK 227
+++R SI +++P ++++DE TS LD S + L V+++ +
Sbjct: 470 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD--VLSKDR 527
Query: 228 TIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKSAGHC 274
T ++ H+ + D++V++ NG +V GT L + + H
Sbjct: 528 TTLIVAHR--LSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 14/197 (7%)
Query: 69 GPSGAGKTTLLEILAGKISSRKVSGKLLVND-RPMDAEHFRRISGYVTQDDALFPLLTVE 127
GP+GAGK+ LE++AG + + +L D P+ E RR G+V QD ALFP L+V
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVY 88
Query: 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIG 187
+ L R + RVR + ++LG+ H+ ER+R ++
Sbjct: 89 RNIAYG----LRNVERVERDRRVREMAEKLGIAHL------LDRKPARLSGGERQRVALA 138
Query: 188 VDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247
LV P ++L+DEP S +D + ++ L+ V + IL + L D +
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 248 VLLSNGFVVHNGTLNHL 264
++ NG +V G L L
Sbjct: 198 AVMLNGRIVEKGKLKEL 214
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G SG+GK+TL +++ +G++L++ +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 69
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 125
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ DE TS LD
Sbjct: 126 REGYNTIVGEQGAG------------LSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ + ++ DR++++ G +V G L
Sbjct: 174 SE-HVI--MRNMHKICKGRTVIIIAAR--LSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 39/236 (16%)
Query: 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-- 102
K D IL +++ + GE+ I G SG+GK+TL +++ +G++L++ +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDLAL 75
Query: 103 -DAEHFRRISGYVTQDDALF------------PLLTVEETLMCSALLRLTAGRRKQAASR 149
D RR G V QD+ L P ++VE+ + + L AG +
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL----AGAHDFISEL 131
Query: 150 VRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209
G +G +R+R +I LV++P +++ DE TS LD
Sbjct: 132 REGYNTIVGEQGAG------------LSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 210 SALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
S HV+ +++M + +G+T+I+ + ++ DR++++ G +V G L
Sbjct: 180 SE-HVI--MRNMHKICKGRTVIIIAAR--LSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 87/220 (39%), Gaps = 20/220 (9%)
Query: 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL-VNDRPMDAEHF 107
+ ++ DVS GE+ AI GP+GAGK+TLL +L G +S LL N +
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 108 RRISGYVTQDDAL-FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXX 166
R + Q L FP E M GR S+ R L+++
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQM---------GRAPYGGSQDRQALQQVMAQ--TDCL 132
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVH------DPAVVLIDEPTSGLDSASALHVVTLLKS 220
E++R + L P + +DEPTS LD H + LL+
Sbjct: 133 ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192
Query: 221 MVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260
+ + + +H L DR++LL+ G +V GT
Sbjct: 193 LTRQEPLAVCCVLHDLNLAAL-YADRIMLLAQGKLVACGT 231
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 40/273 (14%)
Query: 7 APVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITA 66
+P+SGS L L K L KF + ++ Y + + +L+ ++ PG++TA
Sbjct: 2 SPLSGS---LAPLNMKGLV-----KFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTA 49
Query: 67 IAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM---DAEHFRRISGYVTQDDALFPL 123
+ GP+G+GK+T+ +L + GK+L++ P+ D + V Q+ LF
Sbjct: 50 LVGPNGSGKSTVAALLQNLY--QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 124 ---------LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXXX 174
LT T+ + + +G + +G E+G
Sbjct: 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG------------ETGN 155
Query: 175 XXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234
+R+ ++ L+ P ++++D TS LD+ + L V LL +T++L
Sbjct: 156 QLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
Query: 235 QPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
Q + E ++ L G V GT L ER
Sbjct: 216 Q--LSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR------PMDAEHFRRISGY 113
+ GE + GPSG GKTT L ++AG G++ DR P D R IS
Sbjct: 36 KDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKD----RNIS-M 88
Query: 114 VTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXX 173
V Q A++P +TV E + L++ + + RVR + L ++ +
Sbjct: 89 VFQSYAVWPHMTVYENIAFP--LKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYP 140
Query: 174 XXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTI 233
+R+R ++ +V +P V+L+DEP S LD+ + + +K + T I
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 234 HQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS---AGHCIPRHVNVLEFAI 286
H + + DR+ +++ G ++ G+ + R S A +N+LE ++
Sbjct: 201 HD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSV 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 40/273 (14%)
Query: 7 APVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITA 66
+P+SGS L L K L KF + ++ Y + + +L+ ++ PG++TA
Sbjct: 2 SPLSGS---LAPLNMKGLV-----KFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTA 49
Query: 67 IAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM---DAEHFRRISGYVTQDDALFPL 123
+ GP+G+GK+T+ +L + GK+L++ P+ D + V Q+ LF
Sbjct: 50 LVGPNGSGKSTVAALLQNLY--QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 124 ---------LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXXX 174
LT T+ + + +G + +G E+G
Sbjct: 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG------------ETGN 155
Query: 175 XXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234
+R+ ++ L+ P ++++D TS LD+ + L V LL +T++L
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
Query: 235 QPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267
Q + E ++ L G V GT L ER
Sbjct: 216 Q--LSLAERAHHILFLKEGSVCEQGTHLQLMER 246
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR------PMDAEHFRRISGY 113
+ GE + GPSG GKTT L ++AG G++ DR P D R IS
Sbjct: 35 KDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPKD----RNIS-M 87
Query: 114 VTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXX 173
V Q A++P +TV E + L++ + + RVR + L ++ +
Sbjct: 88 VFQSYAVWPHMTVYENIAFP--LKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYP 139
Query: 174 XXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTI 233
+R+R ++ +V +P V+L+DEP S LD+ + + +K + T I
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 234 HQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS---AGHCIPRHVNVLEFAI 286
H + + DR+ +++ G ++ G+ + R S A +N+LE ++
Sbjct: 200 HD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSV 254
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 30/224 (13%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRIS 111
+K + + G+I + G +GAGKTT L +AG + ++K GK++ N + + + I+
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK--GKIIFNGQDITNKPAHVIN 79
Query: 112 ----GYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAAS-------RVRGLLKELGLD 160
V + +FP LTV E L A R K+ R++ LK+LG
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG-- 137
Query: 161 HVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKS 220
E++ +IG L P ++ DEP+ GL V +++
Sbjct: 138 -------------GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQK 184
Query: 221 MVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264
+NQ T IL + Q L++ +L G +V G + L
Sbjct: 185 --INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM-------- 102
+LK VS +AR G++ +I G SG+GK+T L + + G ++VN + +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 103 -----DAEHFRRISGYVT---QDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLL 154
D R + +T Q L+ +TV E +M A +++ + A R L
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVLGLSKHDARERALKYL 137
Query: 155 KELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHV 214
++G+D A +++R SI L +P V+L DEPTS LD V
Sbjct: 138 AKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 215 VTLLKSMVVNQGKTIILTIHQPGF 238
+ +++ + +GKT+++ H+ GF
Sbjct: 193 LRIMQQL-AEEGKTMVVVTHEMGF 215
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEH 106
D + ILK V+ GE+ A+ GP+GAGK+TL +ILAG G++L +D E+
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL-----LDGEN 68
Query: 107 FRRISGYVTQDDALF---------PLLTVEETLMCSALLRLTAGRRKQAA---SRVRGLL 154
+S LF P +T+ L + L+ GR A ++V+ L
Sbjct: 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA--LQAKLGREVGVAEFWTKVKKAL 126
Query: 155 KELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHV 214
+ L D E++R I LV +P ++DE SGLD + V
Sbjct: 127 ELLDWDE----SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182
Query: 215 VTLLKSMVVNQGKTIILTIHQPGFRILELF--DRLVLLSNGFVVHNG 259
+ +M +++T +Q RIL D++ ++ +G VV G
Sbjct: 183 ARGVNAMRGPNFGALVITHYQ---RILNYIQPDKVHVMMDGRVVATG 226
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 34/245 (13%)
Query: 31 KFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEIL------AG 84
+F + N+ Y T+ + LK ++ G A+ G +G+GK+T+ ++L G
Sbjct: 19 EFSDVNFSYPKQTNHR----TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 85 KISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLR-----LT 139
I K+ GK N + R I G V QD LF T++ ++ L +
Sbjct: 75 DI---KIGGK---NVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIK 127
Query: 140 AGRRKQAASRVRGLLKELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLI 199
A + Q + L K+ D + ER+R +I L+ DP +V+
Sbjct: 128 ATKSAQLYDFIEALPKKW--DTIVGNKGMKLSGG------ERQRIAIARCLLKDPKIVIF 179
Query: 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
DE TS LDS + ++ + N +T+I+ H+ + + ++LL+ G +V G
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKN--RTLIIIAHR--LSTISSAESIILLNKGKIVEKG 235
Query: 260 TLNHL 264
T L
Sbjct: 236 THKDL 240
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK----VSGKLLVNDRPMDAEHF 107
L VS G++T I GP+G+GK+TL+ ++ G + + + K + N P + H+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 108 RRISGYVTQDDALFPL--LTVEETLM----CSALLRLTA-------GRRKQAASRVRGLL 154
+ + T PL +TV E L+ C L + + ++ + +L
Sbjct: 83 GIVRTFQTPQ----PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 155 KELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHV 214
+ L L H+ + + IG L+ +P ++++DEP +G+ A +
Sbjct: 139 EFLKLSHL------YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 215 VTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
+ + +G T ++ H+ +L D L ++ NG ++ G
Sbjct: 193 FNHVLELKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK----VSGKLLVNDRPMDAEHF 107
L VS G++T I GP+G+GK+TL+ ++ G + + + K + N P + H+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 108 RRISGYVTQ---------DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG 158
+ + T ++ L + E+ + S + + ++ + +L+ L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 159 LDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLL 218
L H+ + + IG L+ +P ++++D+P +G+ A + +
Sbjct: 143 LSHL------YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHV 196
Query: 219 KSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
+ +G T ++ H+ +L D L ++ NG ++ G
Sbjct: 197 LELKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK----VSGKLLVNDRPMDAEHF 107
L VS G++T I GP+G+GK+TL+ ++ G + + + K + N P + H+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 108 RRISGYVTQ---------DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG 158
+ + T ++ L + E+ + S + + ++ + +L+ L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 159 LDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLL 218
L H+ + + IG L+ +P ++++DEP +G+ A + +
Sbjct: 143 LSHL------YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 219 KSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
+ +G T ++ H+ +L D L ++ NG ++ G
Sbjct: 197 LELKA-KGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 34/191 (17%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVSGKLLVNDRP--MDAE 105
F L+ E R GE+ I GP+G GKTT +++LAG + + KV L V +P + AE
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE 429
Query: 106 HFRRISGYVTQDDALFPLLT-VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAX 164
+ + ++ LL+ ++ + + S + LLK LG+
Sbjct: 430 Y----------EGTVYELLSKIDSSKLNSNFYKTE-------------LLKPLGI----- 461
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
E +R +I L+ D + L+DEP++ LD L V ++ ++
Sbjct: 462 -IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520
Query: 225 QGKTIILTIHQ 235
KT ++ H
Sbjct: 521 NEKTALVVEHD 531
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 60 RPGEITAIAGPSGAGKTTLLEILAGKISS-------------RKVSGKLLVNDRPMDAEH 106
+ G + I GP+G GKTT ++ILAG++ R G L N +
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQN-------Y 167
Query: 107 FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXX 166
F R+ ++ + P++ + L + G+ ++ +V + K +
Sbjct: 168 FERL-----KNGEIRPVVKPQ---YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQG 226
E +R +I L+ DEP+S LD L V +++ + N+G
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEG 278
Query: 227 KTIILTIHQ 235
K +++ H
Sbjct: 279 KAVLVVEHD 287
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 34/191 (17%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVSGKLLVNDRP--MDAE 105
F L+ E R GE+ I GP+G GKTT +++LAG + + KV L V +P + AE
Sbjct: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE 415
Query: 106 HFRRISGYVTQDDALFPLLT-VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAX 164
+ + ++ LL+ ++ + + S + LLK LG+
Sbjct: 416 Y----------EGTVYELLSKIDSSKLNSNFYKTE-------------LLKPLGI----- 447
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
E +R +I L+ D + L+DEP++ LD L V ++ ++
Sbjct: 448 -IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 506
Query: 225 QGKTIILTIHQ 235
KT ++ H
Sbjct: 507 NEKTALVVEHD 517
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 60 RPGEITAIAGPSGAGKTTLLEILAGKISS-------------RKVSGKLLVNDRPMDAEH 106
+ G + I GP+G GKTT ++ILAG++ R G L N +
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQN-------Y 153
Query: 107 FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAXXX 166
F R+ ++ + P++ + L + G+ ++ +V + K +
Sbjct: 154 FERL-----KNGEIRPVVKPQ---YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 205
Query: 167 XXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQG 226
E +R +I L+ DEP+S LD L V +++ + N+G
Sbjct: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEG 264
Query: 227 KTIILTIHQ 235
K +++ H
Sbjct: 265 KAVLVVEHD 273
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 43 TSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND-RP 101
T + K L VS G+ A+ G SG+GK+T+ + S L +D R
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 102 MDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGL--LKEL-- 157
+ RR V+Q+ LF T+ + +A T + +QAA + + ++ +
Sbjct: 410 YKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
Query: 158 GLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTL 217
GLD V +R+R +I L+ D V+++DE TS LD+ S +
Sbjct: 469 GLDTV------IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522
Query: 218 LKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259
L + N KT+++ H+ +E D ++++ G ++ G
Sbjct: 523 LDELQKN--KTVLVIAHR--LSTIEQADEILVVDEGEIIERG 560
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 34 EFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93
EF V+ ++ + I +D S G +TA+ GPSG+GK+T+L +L +
Sbjct: 343 EFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 94 KLLVND-RPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRG 152
L +D R ++ R G V+Q+ LF E + Q + V
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 153 LLKEL-----GLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLD 207
+ + G + V +++R +I L+ +P ++L+DE TS LD
Sbjct: 462 AVAFIRNFPQGFNTVV------GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
Query: 208 SASALHVVTLLKSMVVNQGKTIILTIHQ 235
+ + V L ++ G+T+++ H+
Sbjct: 516 AENEYLVQEALDRLM--DGRTVLVIAHR 541
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85
+ K IL+ +S + PGE+ AI GP+G+GK+TL LAG+
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 55 VSCEARPGEITAIAGPSGAGKTTLLEILAGKI--SSRKVSGKLLVNDRP---MDAEHFRR 109
+S + +TAI G S +GK+T++E + + + R +SG++L + M E R+
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 110 IS----GYVTQ--DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA 163
I V Q +L P + V E + + + L+ + L+ A
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 164 XXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223
++R I + L+ DP V+++DEPTS LD + H++ LLK +
Sbjct: 147 VLNSYPLQLSGGM----KQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 224 NQGKTIILTIHQPGFRILELFDRLVLLSNG-FVVHNGT 260
T+I H EL D++ ++ G V +N T
Sbjct: 203 MLKITLIFVTHDIAV-AAELADKVAVIYGGNLVEYNST 239
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85
+ K IL+ +S + PGE+ AI GP+G+GK+TL LAG+
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 180 ERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239
+R+R +I L+ D ++++DE TS LD+ S + L + N +T ++ H+
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN--RTSLVIAHR--LS 540
Query: 240 ILELFDRLVLLSNGFVVHNGTLNHLEE 266
+E D +V++ +G +V GT N L E
Sbjct: 541 TIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEH 106
DP +L V+ +PG + A+ G +G+GK+TL+ ++ I + G++ V++ +
Sbjct: 356 DP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER--GRVEVDELDVRTVK 411
Query: 107 FRRISGYVT---QDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA 163
+ + G+++ Q+ LF T++E L R A + + + + +
Sbjct: 412 LKDLRGHISAVPQETVLFS-GTIKENLKWG---REDATDDEIVEAAKIAQIHDFIISLPE 467
Query: 164 XXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223
+++R SI LV P V+++D+ TS +D + ++ LK
Sbjct: 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-- 525
Query: 224 NQG-KTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKSAGHCIP 276
+G T I+T P L D++++L G V GT L E HC P
Sbjct: 526 TKGCTTFIITQKIP---TALLADKILVLHEGKVAGFGTHKELLE------HCKP 570
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 14/191 (7%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND-RPMDAEHFRR 109
I +D S G +TA+ GPSG+GK+T+L +L + L +D R ++ R
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 110 ISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKEL-----GLDHVAX 164
G V+Q+ LF E + Q + V + + G + V
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV- 508
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
+++R +I L+ +P ++L+DE TS LD+ + V L ++
Sbjct: 509 -----GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-- 561
Query: 225 QGKTIILTIHQ 235
G+T+++ H
Sbjct: 562 DGRTVLVIAHH 572
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 34/191 (17%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVSGKLLVNDRPMDAEHF 107
F L+ E + GE+ I GP+G GKTT ++ LAG + + K+ L V +P
Sbjct: 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----- 354
Query: 108 RRISGYVTQD--DALFPLLT-VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAX 164
Y+ D ++ LL+ ++ + + S + LLK LG+
Sbjct: 355 -----YIKADYEGTVYELLSKIDASKLNSNFYKTE-------------LLKPLGI----- 391
Query: 165 XXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224
E +R +I L+ D + L+DEP++ LD L V ++ +
Sbjct: 392 -IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEK 450
Query: 225 QGKTIILTIHQ 235
KT ++ H
Sbjct: 451 NEKTALVVEHD 461
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86
+ G + I GP+G GK+T ++ILAG++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQL 71
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 31/182 (17%)
Query: 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE---HFR--RISGYV 114
RPG++ + G +G GK+T L+ILAGK + G+ +D P E +FR + Y
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRF--DDPPEWQEIIKYFRGSELQNYF 156
Query: 115 T---QDDAL----------FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH 161
T +DD P LL+L R +++ V+ +K L L++
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL---RMEKSPEDVKRYIKILQLEN 213
Query: 162 VAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSM 221
V E +R +IG+ V + V + DEP+S LD L+ +++S+
Sbjct: 214 V------LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 222 VV 223
+
Sbjct: 268 LA 269
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
F+L E EI + G +G GKTTL+++LAG +
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 180 ERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239
+R+R +I L+ D ++++DE TS LD+ S + L + N +T ++ H+
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN--RTSLVIAHR--LS 540
Query: 240 ILELFDRLVLLSNGFVVHNGTLNHL 264
+E D +V++ +G +V GT + L
Sbjct: 541 TIEQADEIVVVEDGIIVERGTHSEL 565
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA 104
L +S E R GEI + GP+GAGK+TLL +AG S + G + +P++A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK---GSIQFAGQPLEA 65
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA 104
L +S E R GEI + GP+GAGK+TLL +AG S + G + +P++A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK---GSIQFAGQPLEA 65
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVS 92
+ EA+ GEI I GP+G GKTT IL G+I++ + S
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGS 324
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 64 ITAIAGPSGAGKTTLLEILAGKI 86
I + G +G GKTT+L+ILAG+I
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEI 49
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA 104
L +S E R GEI + GP+GAGK+TLL AG S + G + +P++A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK---GSIQFAGQPLEA 65
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA 104
L +S E R GEI + GP+GAGK+TLL AG S + G + +P++A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK---GSIQFAGQPLEA 65
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 13/81 (16%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRI 110
+LKD++ + G++ A+AG +GAGKT+LL ++ G++ + GK+ +H RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--GKI---------KHSGRI 101
Query: 111 SGYVTQDDALFPLLTVEETLM 131
S + +Q+ + P T++E ++
Sbjct: 102 S-FCSQNSWIMP-GTIKENII 120
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 13/81 (16%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRI 110
+LKD++ + G++ A+AG +GAGKT+LL ++ G++ + GK+ +H RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--GKI---------KHSGRI 101
Query: 111 SGYVTQDDALFPLLTVEETLM 131
S + +Q+ + P T++E ++
Sbjct: 102 S-FCSQNSWIMP-GTIKENII 120
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
+LKD++ + G++ A+AG +GAGKT+LL ++ G++
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 70
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
+LKD++ + G++ A+AG +GAGKT+LL ++ G++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
+LKD++ + G++ A+AG +GAGKT+LL ++ G++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
+LKD++ + G++ A+AG +GAGKT+LL ++ G++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
+LKD++ + G++ A+AG +GAGKT+LL ++ G++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86
+LKD++ + G++ A+AG +GAGKT+LL ++ G++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 46 KDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL-LVNDRP--- 101
K K ILK +S + G+ + G +GAGKTTLL IL SG + L P
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL--NAYEPATSGTVNLFGKXPGKV 88
Query: 102 -MDAEHFRRISGYVTQD--DALFPLLTVEETLMCSALLRLTAGRRKQAASRVRG----LL 154
AE R+ G+V+ + V + ++ A + G + +R LL
Sbjct: 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI--GVYQDIDDEIRNEAHQLL 146
Query: 155 KELGLDHVAXXXXXXXXXXXXXXXXERRRASIGVDLVHDPAVVLIDEPTSGLD 207
K +G A E++R I L P V+++DEP +GLD
Sbjct: 147 KLVGXSAKAQQYIGYLSTG------EKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 42 VTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP 101
++ K +F L++++ E GE I GP+G+GKTTLL ++G + SG + +N
Sbjct: 11 LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP---YSGNIFIN--- 63
Query: 102 MDAEHFRRISGYV 114
R+I Y+
Sbjct: 64 --GMEVRKIRNYI 74
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
+LK+++ GE+ AI G +G+GKT+LL ++ G++ + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
+LK+++ GE+ AI G +G+GKT+LL ++ G++ + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
+LK+++ GE+ AI G +G+GKT+LL ++ G++ + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
+LK+++ GE+ AI G +G+GKT+LL ++ G++ + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90
+LK+++ GE+ AI G +G+GKT+LL ++ G++ + +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 92
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83
LK+V E + G IT + GP+GAGK++L E ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83
LK+V E + G IT + GP+GAGK++L E ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83
LK+V E + G IT + GP+GAGK++L E ++
Sbjct: 31 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 61
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85
LK++ C PG +TA+ GP A TL+E +GK
Sbjct: 295 LKEIICSWNPGRVTALVGPR-ATSYTLVESFSGK 327
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 340 GQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTR 387
G+ C+++ N+L V +A+VAG ++G + + NT QV L+T+
Sbjct: 392 GEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANT-QVDLETK 438
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 340 GQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTR 387
G+ C+++ N+L V +A+VAG ++G + + NT QV L+T+
Sbjct: 392 GEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANT-QVDLETK 438
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 340 GQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTR 387
G+ C+++ N+L V +A+VAG ++G + + NT QV L+T+
Sbjct: 392 GEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANT-QVDLETK 438
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 66 AIAGPSGAGKTTLLEILAGKI 86
A+ GP+GAGK+TL+ +L G++
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 66 AIAGPSGAGKTTLLEILAGKI 86
A+ GP+GAGK+TL+ +L G++
Sbjct: 697 AVIGPNGAGKSTLINVLTGEL 717
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 66 AIAGPSGAGKTTLLEILAGKI 86
A+ GP+GAGK+TL+ +L G++
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|2Q7N|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
pdb|2Q7N|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
Length = 488
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85
LK++ C PG IT + GP + TL E ++GK
Sbjct: 300 LKEIICSWNPGRITGLVGPRNT-EYTLFESISGK 332
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM 102
K +L+ ++ G + GP+G GKTTLL+ ++ + + + G+++ N P+
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL--KPLKGEIIYNGVPI 73
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 67 IAGPSGAGKTTLLEILAGKISS--RKVSGKLLVNDRPMDA 104
+AGP G GKTTL I+A ++ + SG +LV M A
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 67 IAGPSGAGKTTLLEILAGKISS--RKVSGKLLVNDRPMDA 104
+AGP G GKTTL I+A ++ + SG +LV M A
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 67 IAGPSGAGKTTLLEILAGKISS--RKVSGKLLVNDRPMDA 104
+AGP G GKTTL I+A ++ + SG +LV M A
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 67 IAGPSGAGKTTLLEILAGKISS--RKVSGKLLVNDRPMDA 104
+AGP G GKTTL I+A ++ + SG +LV M A
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 67 IAGPSGAGKTTLLEILAGKISS--RKVSGKLLVNDRPMDA 104
+AGP G GKTTL I+A ++ + SG +LV M A
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95
>pdb|3C5O|A Chain A, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
pdb|3C5O|B Chain B, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
pdb|3C5O|C Chain C, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
pdb|3C5O|D Chain D, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
Length = 157
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96
AR G++T+ AG G G ++ IL G++ +SG++L
Sbjct: 17 ARIGDVTS-AGEIGTGVRRIIPILGGEVKGEGISGQVL 53
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 41 GVTSKKDPKFILKDVSCEARPG-EITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND 99
GV + DP+ +PG ++ A++G G+GK+TL LA +S++ + +++ D
Sbjct: 10 GVLERLDPR----------QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXD 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,217,543
Number of Sequences: 62578
Number of extensions: 626949
Number of successful extensions: 2260
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 185
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)