Query 046991
Match_columns 612
No_of_seqs 428 out of 2546
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1E-110 3E-115 943.5 61.8 580 14-612 21-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1E-106 3E-111 918.9 62.7 563 45-611 34-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 3E-105 6E-110 909.3 66.2 578 15-607 36-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 2E-102 3E-107 947.5 64.0 588 15-607 26-694 (1394)
5 PLN03140 ABC transporter G fam 100.0 1E-100 3E-105 927.1 66.2 585 17-611 866-1470(1470)
6 PLN03140 ABC transporter G fam 100.0 3E-100 6E-105 924.5 62.3 591 12-607 125-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-99 6E-104 919.0 64.9 573 16-609 757-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 5.6E-97 1E-101 845.9 39.7 557 45-608 800-1384(1391)
9 KOG0065 Pleiotropic drug resis 100.0 6.2E-92 1.4E-96 804.5 43.5 557 47-608 126-731 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.6E-55 5.7E-60 418.7 23.8 232 18-286 2-237 (240)
11 COG1135 AbcC ABC-type metal io 100.0 4.1E-52 8.8E-57 415.7 22.8 223 18-264 1-229 (339)
12 COG1120 FepC ABC-type cobalami 100.0 7E-52 1.5E-56 413.8 21.9 220 18-264 2-226 (258)
13 COG1125 OpuBA ABC-type proline 100.0 1.5E-51 3.3E-56 400.2 22.1 219 18-265 1-224 (309)
14 COG1131 CcmA ABC-type multidru 100.0 6E-51 1.3E-55 422.3 27.1 224 18-270 4-230 (293)
15 COG3638 ABC-type phosphate/pho 100.0 3.5E-51 7.7E-56 395.1 20.6 228 17-270 2-241 (258)
16 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-50 2.5E-55 392.6 23.5 223 15-265 5-234 (263)
17 COG1136 SalX ABC-type antimicr 100.0 8.6E-50 1.9E-54 391.5 24.5 212 18-255 1-220 (226)
18 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.3E-50 1.6E-54 397.3 24.1 219 17-265 3-226 (254)
19 COG1116 TauB ABC-type nitrate/ 100.0 8.1E-50 1.8E-54 391.9 22.9 208 17-255 2-211 (248)
20 COG3842 PotA ABC-type spermidi 100.0 7.3E-50 1.6E-54 415.8 22.0 235 16-286 3-238 (352)
21 COG3839 MalK ABC-type sugar tr 100.0 1.9E-49 4.2E-54 410.7 24.0 221 17-266 2-223 (338)
22 COG4555 NatA ABC-type Na+ tran 100.0 1E-49 2.2E-54 375.2 18.8 221 18-267 1-223 (245)
23 COG1118 CysA ABC-type sulfate/ 100.0 4.1E-49 8.9E-54 393.1 19.9 211 47-266 13-227 (345)
24 PRK13537 nodulation ABC transp 100.0 1.9E-47 4.1E-52 399.3 28.4 221 17-267 6-228 (306)
25 TIGR02314 ABC_MetN D-methionin 100.0 2.5E-47 5.4E-52 402.4 28.3 222 18-264 1-228 (343)
26 cd03261 ABC_Org_Solvent_Resist 100.0 2.7E-47 5.9E-52 383.9 26.7 218 19-264 1-224 (235)
27 COG2884 FtsE Predicted ATPase 100.0 5.4E-48 1.2E-52 360.7 19.7 214 18-260 1-220 (223)
28 TIGR03265 PhnT2 putative 2-ami 100.0 4E-47 8.7E-52 403.2 28.4 220 17-265 3-223 (353)
29 COG1124 DppF ABC-type dipeptid 100.0 1E-47 2.3E-52 373.7 21.8 223 17-266 2-231 (252)
30 PRK11650 ugpC glycerol-3-phosp 100.0 4E-47 8.6E-52 403.7 28.2 220 18-265 3-223 (356)
31 PRK11432 fbpC ferric transport 100.0 7.7E-47 1.7E-51 400.5 28.7 220 17-265 5-225 (351)
32 PRK13536 nodulation factor exp 100.0 1.7E-46 3.7E-51 396.5 29.5 222 16-267 39-262 (340)
33 COG1122 CbiO ABC-type cobalt t 100.0 5.5E-47 1.2E-51 378.1 23.8 222 17-266 2-228 (235)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-46 3.3E-51 399.6 28.1 219 18-265 5-227 (362)
35 COG1117 PstB ABC-type phosphat 100.0 2.8E-47 6.1E-52 362.1 19.7 236 15-285 4-248 (253)
36 PRK10851 sulfate/thiosulfate t 100.0 1.9E-46 4.1E-51 398.1 28.2 221 18-265 2-225 (353)
37 COG1137 YhbG ABC-type (unclass 100.0 3.8E-48 8.1E-53 364.3 13.2 210 46-265 14-227 (243)
38 PRK11607 potG putrescine trans 100.0 4E-46 8.6E-51 398.4 30.1 221 16-265 17-238 (377)
39 PRK09452 potA putrescine/sperm 100.0 2.7E-46 5.8E-51 399.1 28.6 222 15-265 11-233 (375)
40 cd03265 ABC_DrrA DrrA is the A 100.0 3.2E-46 6.9E-51 372.4 26.3 216 19-263 1-218 (220)
41 cd03259 ABC_Carb_Solutes_like 100.0 2.8E-46 6.1E-51 370.9 25.1 212 19-259 1-213 (213)
42 TIGR01288 nodI ATP-binding ABC 100.0 5.9E-46 1.3E-50 388.0 28.4 221 16-266 2-224 (303)
43 COG0411 LivG ABC-type branched 100.0 6.8E-47 1.5E-51 368.4 19.7 222 17-265 3-238 (250)
44 cd03296 ABC_CysA_sulfate_impor 100.0 7E-46 1.5E-50 374.6 27.3 220 18-264 2-224 (239)
45 PRK11153 metN DL-methionine tr 100.0 6.1E-46 1.3E-50 393.6 28.1 223 18-265 1-229 (343)
46 PRK11000 maltose/maltodextrin 100.0 7.2E-46 1.6E-50 396.4 28.2 219 18-265 3-222 (369)
47 COG3840 ThiQ ABC-type thiamine 100.0 1.2E-46 2.5E-51 349.1 18.3 201 54-265 17-218 (231)
48 cd03256 ABC_PhnC_transporter A 100.0 9.4E-46 2E-50 373.8 26.0 220 19-265 1-233 (241)
49 cd03301 ABC_MalK_N The N-termi 100.0 9.9E-46 2.2E-50 366.8 25.6 212 19-259 1-213 (213)
50 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.2E-45 2.6E-50 368.3 26.3 216 19-261 1-218 (220)
51 cd03258 ABC_MetN_methionine_tr 100.0 1.1E-45 2.3E-50 371.7 26.1 222 18-264 1-228 (233)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-45 2.9E-50 371.6 26.3 218 19-264 1-230 (236)
53 TIGR01188 drrA daunorubicin re 100.0 8.9E-46 1.9E-50 386.4 25.5 209 47-267 4-214 (302)
54 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-45 2.4E-50 367.4 24.8 210 18-255 1-216 (216)
55 TIGR03522 GldA_ABC_ATP gliding 100.0 2.2E-45 4.9E-50 383.2 27.7 219 18-267 2-222 (301)
56 PRK11831 putative ABC transpor 100.0 2.7E-45 5.9E-50 376.7 27.7 222 15-264 4-231 (269)
57 PRK13637 cbiO cobalt transport 100.0 3.8E-45 8.1E-50 379.0 28.9 224 18-265 2-233 (287)
58 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-45 2.4E-50 373.9 24.1 221 18-264 1-233 (243)
59 TIGR01186 proV glycine betaine 100.0 1.6E-45 3.5E-50 390.8 26.4 209 46-265 3-218 (363)
60 cd03260 ABC_PstB_phosphate_tra 100.0 1.4E-45 3E-50 369.5 24.4 216 19-263 1-226 (227)
61 cd03218 ABC_YhbG The ABC trans 100.0 2.4E-45 5.3E-50 368.8 25.9 216 19-264 1-220 (232)
62 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-45 4.1E-50 394.8 26.4 219 18-264 3-226 (402)
63 cd03269 ABC_putative_ATPase Th 100.0 2.7E-45 5.9E-50 363.0 25.1 210 19-259 1-210 (210)
64 cd03263 ABC_subfamily_A The AB 100.0 3E-45 6.4E-50 365.2 25.3 217 19-264 1-219 (220)
65 PRK13634 cbiO cobalt transport 100.0 5.5E-45 1.2E-49 378.3 28.0 234 18-276 2-248 (290)
66 PRK13643 cbiO cobalt transport 100.0 6.3E-45 1.4E-49 377.5 28.4 241 18-284 1-254 (288)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.1E-45 4.5E-50 365.8 23.8 211 19-255 1-218 (218)
68 PRK09493 glnQ glutamine ABC tr 100.0 5.5E-45 1.2E-49 368.3 27.2 218 18-264 1-223 (240)
69 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.4E-45 9.5E-50 369.5 26.3 217 19-264 1-223 (242)
70 cd03266 ABC_NatA_sodium_export 100.0 3.9E-45 8.4E-50 363.9 25.4 216 18-259 1-218 (218)
71 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.7E-45 5.8E-50 376.7 24.5 236 19-265 1-249 (269)
72 PRK13650 cbiO cobalt transport 100.0 9.4E-45 2E-49 374.6 28.2 221 18-265 4-228 (279)
73 PRK15079 oligopeptide ABC tran 100.0 8E-45 1.7E-49 382.7 28.0 236 16-265 6-250 (331)
74 PRK11264 putative amino-acid A 100.0 7.7E-45 1.7E-49 369.3 27.0 218 18-264 3-231 (250)
75 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-44 2.4E-49 365.1 27.8 218 18-265 1-220 (236)
76 COG0410 LivF ABC-type branched 100.0 2.8E-45 6.2E-50 354.4 22.3 219 17-265 2-225 (237)
77 cd03268 ABC_BcrA_bacitracin_re 100.0 4.6E-45 1E-49 360.8 24.1 207 19-259 1-208 (208)
78 PRK13647 cbiO cobalt transport 100.0 1.4E-44 3.1E-49 372.2 28.7 218 18-264 4-225 (274)
79 PRK11629 lolD lipoprotein tran 100.0 1.4E-44 3.1E-49 363.7 27.5 218 18-261 5-229 (233)
80 cd03224 ABC_TM1139_LivF_branch 100.0 5.9E-45 1.3E-49 363.5 24.3 214 19-264 1-219 (222)
81 cd03257 ABC_NikE_OppD_transpor 100.0 9.9E-45 2.1E-49 363.2 25.6 218 18-259 1-228 (228)
82 TIGR00972 3a0107s01c2 phosphat 100.0 1.9E-44 4.1E-49 365.9 27.5 218 18-264 1-230 (247)
83 COG4152 ABC-type uncharacteriz 100.0 1.9E-45 4.1E-50 355.5 18.9 221 18-269 2-222 (300)
84 PRK11300 livG leucine/isoleuci 100.0 1.9E-44 4.2E-49 367.5 26.9 220 18-264 5-241 (255)
85 PRK13651 cobalt transporter AT 100.0 2.4E-44 5.2E-49 375.4 28.0 223 18-265 2-253 (305)
86 PRK13636 cbiO cobalt transport 100.0 3.6E-44 7.9E-49 370.9 28.9 231 18-276 5-244 (283)
87 cd03226 ABC_cobalt_CbiO_domain 100.0 5.3E-45 1.1E-49 359.7 21.6 192 49-256 13-205 (205)
88 PRK11248 tauB taurine transpor 100.0 2.4E-44 5.2E-49 366.8 27.0 214 18-262 1-216 (255)
89 PRK11247 ssuB aliphatic sulfon 100.0 1.8E-44 3.9E-49 367.7 25.9 210 16-262 10-219 (257)
90 PRK13631 cbiO cobalt transport 100.0 4.2E-44 9E-49 375.8 29.3 234 17-276 20-278 (320)
91 PRK14247 phosphate ABC transpo 100.0 3.9E-44 8.5E-49 364.2 27.8 221 18-265 3-233 (250)
92 PRK10895 lipopolysaccharide AB 100.0 2.2E-44 4.8E-49 364.1 25.8 218 18-264 3-224 (241)
93 TIGR02673 FtsE cell division A 100.0 2.1E-44 4.6E-49 357.5 25.0 208 18-254 1-214 (214)
94 PRK13646 cbiO cobalt transport 100.0 3E-44 6.4E-49 372.2 27.1 223 18-265 2-234 (286)
95 PRK10619 histidine/lysine/argi 100.0 4.2E-44 9E-49 365.6 27.8 218 18-264 5-239 (257)
96 TIGR03005 ectoine_ehuA ectoine 100.0 3.3E-44 7.1E-49 365.3 26.9 218 19-264 1-234 (252)
97 PRK11614 livF leucine/isoleuci 100.0 2.3E-44 5.1E-49 363.0 25.5 217 17-265 4-225 (237)
98 cd03264 ABC_drug_resistance_li 100.0 1.8E-44 4E-49 357.3 24.2 209 19-259 1-211 (211)
99 PRK13548 hmuV hemin importer A 100.0 3.5E-44 7.6E-49 366.3 26.7 219 18-265 2-229 (258)
100 cd03292 ABC_FtsE_transporter F 100.0 2.5E-44 5.3E-49 357.0 24.8 208 19-255 1-214 (214)
101 PRK14267 phosphate ABC transpo 100.0 5.4E-44 1.2E-48 363.9 27.7 221 18-265 4-236 (253)
102 PRK11124 artP arginine transpo 100.0 4.4E-44 9.6E-49 362.1 26.9 217 18-264 2-228 (242)
103 PRK13635 cbiO cobalt transport 100.0 6.6E-44 1.4E-48 368.2 28.6 220 18-265 5-228 (279)
104 PRK10253 iron-enterobactin tra 100.0 3.4E-44 7.4E-49 367.8 25.9 225 14-265 3-232 (265)
105 PRK10070 glycine betaine trans 100.0 4.2E-44 9.1E-49 384.3 27.7 237 18-265 4-253 (400)
106 COG0444 DppD ABC-type dipeptid 100.0 2.9E-44 6.2E-49 364.2 24.7 229 19-265 2-242 (316)
107 cd03262 ABC_HisP_GlnQ_permease 100.0 2.9E-44 6.3E-49 356.2 24.2 208 19-255 1-213 (213)
108 TIGR02211 LolD_lipo_ex lipopro 100.0 4.3E-44 9.3E-49 357.2 25.5 212 19-256 2-220 (221)
109 cd03234 ABCG_White The White s 100.0 5.6E-44 1.2E-48 357.7 26.2 221 18-259 3-226 (226)
110 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.4E-44 7.3E-49 355.5 24.2 210 19-259 1-211 (211)
111 TIGR03411 urea_trans_UrtD urea 100.0 6.1E-44 1.3E-48 361.0 26.5 218 18-264 2-229 (242)
112 TIGR01257 rim_protein retinal- 100.0 7.9E-42 1.7E-46 417.5 50.0 224 17-269 927-1152(2272)
113 PRK14273 phosphate ABC transpo 100.0 8.6E-44 1.9E-48 362.6 27.6 220 17-265 6-237 (254)
114 PRK13638 cbiO cobalt transport 100.0 8.6E-44 1.9E-48 366.0 27.8 218 18-265 1-224 (271)
115 PRK13652 cbiO cobalt transport 100.0 8.2E-44 1.8E-48 367.3 27.7 220 18-265 3-226 (277)
116 PRK10575 iron-hydroxamate tran 100.0 5.3E-44 1.1E-48 366.5 26.0 221 17-264 10-235 (265)
117 PRK14268 phosphate ABC transpo 100.0 9.7E-44 2.1E-48 363.1 27.7 219 16-264 10-240 (258)
118 PRK11308 dppF dipeptide transp 100.0 9.1E-44 2E-48 374.3 28.3 231 17-265 4-243 (327)
119 PRK09984 phosphonate/organopho 100.0 6.4E-44 1.4E-48 365.2 26.3 222 18-264 4-240 (262)
120 PRK11022 dppD dipeptide transp 100.0 9.6E-44 2.1E-48 374.2 28.4 226 18-265 3-242 (326)
121 PRK09473 oppD oligopeptide tra 100.0 1.1E-43 2.5E-48 374.0 28.8 232 15-265 9-250 (330)
122 PRK13641 cbiO cobalt transport 100.0 8.8E-44 1.9E-48 368.8 27.3 222 18-265 2-233 (287)
123 TIGR03415 ABC_choXWV_ATP choli 100.0 3.9E-44 8.4E-49 382.0 25.2 236 19-265 1-253 (382)
124 PRK13633 cobalt transporter AT 100.0 1.3E-43 2.7E-48 366.5 28.3 225 17-265 3-232 (280)
125 PRK10908 cell division protein 100.0 7.8E-44 1.7E-48 355.7 25.9 210 18-256 1-216 (222)
126 PRK11231 fecE iron-dicitrate t 100.0 6.7E-44 1.4E-48 363.7 25.8 219 18-264 2-225 (255)
127 TIGR03410 urea_trans_UrtE urea 100.0 4.1E-44 8.8E-49 359.6 23.5 214 19-264 1-219 (230)
128 cd03225 ABC_cobalt_CbiO_domain 100.0 4.7E-44 1E-48 354.3 23.5 194 49-254 14-211 (211)
129 TIGR02769 nickel_nikE nickel i 100.0 1.1E-43 2.3E-48 364.2 26.8 229 18-265 2-239 (265)
130 PRK13632 cbiO cobalt transport 100.0 1.2E-43 2.6E-48 365.0 27.1 223 15-265 4-230 (271)
131 PRK13644 cbiO cobalt transport 100.0 1.1E-43 2.3E-48 365.8 26.7 217 18-264 1-222 (274)
132 PRK13648 cbiO cobalt transport 100.0 2.2E-43 4.7E-48 362.7 28.7 231 18-276 7-244 (269)
133 TIGR01978 sufC FeS assembly AT 100.0 1.2E-43 2.5E-48 359.0 26.3 222 19-265 1-233 (243)
134 cd03235 ABC_Metallic_Cations A 100.0 3.4E-44 7.4E-49 355.9 21.7 200 47-259 10-213 (213)
135 COG4559 ABC-type hemin transpo 100.0 2.7E-44 5.9E-49 341.0 19.9 219 18-264 1-228 (259)
136 PRK10771 thiQ thiamine transpo 100.0 1.2E-43 2.5E-48 356.8 25.8 217 18-265 1-218 (232)
137 PRK13639 cbiO cobalt transport 100.0 2.7E-43 5.9E-48 363.0 28.8 219 18-265 1-225 (275)
138 PRK14235 phosphate transporter 100.0 2.1E-43 4.5E-48 362.4 27.6 222 15-264 16-249 (267)
139 PRK13649 cbiO cobalt transport 100.0 2.7E-43 5.8E-48 364.1 28.6 221 18-264 2-232 (280)
140 PRK14242 phosphate transporter 100.0 2.4E-43 5.1E-48 359.1 27.6 220 16-264 4-235 (253)
141 PRK10584 putative ABC transpor 100.0 2.4E-43 5.2E-48 353.5 26.9 215 17-257 5-226 (228)
142 PRK14250 phosphate ABC transpo 100.0 1.1E-43 2.4E-48 359.1 24.5 214 17-264 2-219 (241)
143 PRK11144 modC molybdate transp 100.0 1.3E-43 2.9E-48 377.1 26.3 195 54-265 16-217 (352)
144 PRK15093 antimicrobial peptide 100.0 2.7E-43 5.8E-48 371.7 28.4 227 18-265 3-247 (330)
145 PRK14269 phosphate ABC transpo 100.0 2.5E-43 5.4E-48 357.5 26.9 220 18-265 2-229 (246)
146 PRK13645 cbiO cobalt transport 100.0 2.2E-43 4.8E-48 366.3 27.0 223 17-264 5-238 (289)
147 PRK14245 phosphate ABC transpo 100.0 3E-43 6.5E-48 357.8 27.4 220 17-265 2-233 (250)
148 PRK13640 cbiO cobalt transport 100.0 3.9E-43 8.4E-48 363.1 28.4 223 17-265 4-231 (282)
149 PRK14241 phosphate transporter 100.0 3.5E-43 7.5E-48 359.0 27.7 220 18-265 4-241 (258)
150 cd03300 ABC_PotA_N PotA is an 100.0 3.1E-43 6.8E-48 353.7 26.8 217 19-264 1-218 (232)
151 PRK15112 antimicrobial peptide 100.0 2.4E-43 5.3E-48 361.9 26.5 229 18-265 4-238 (267)
152 cd03267 ABC_NatA_like Similar 100.0 1.3E-43 2.8E-48 357.5 23.9 229 20-259 2-236 (236)
153 TIGR03873 F420-0_ABC_ATP propo 100.0 2.1E-43 4.6E-48 360.2 25.7 218 19-264 2-224 (256)
154 TIGR02142 modC_ABC molybdenum 100.0 2.1E-43 4.5E-48 376.0 26.6 199 54-265 15-220 (354)
155 TIGR01277 thiQ thiamine ABC tr 100.0 2.5E-43 5.4E-48 349.9 25.3 211 19-260 1-212 (213)
156 PRK13547 hmuV hemin importer A 100.0 2.4E-43 5.2E-48 362.4 25.4 222 18-264 1-242 (272)
157 TIGR00968 3a0106s01 sulfate AB 100.0 3.9E-43 8.5E-48 354.2 26.4 218 19-265 1-219 (237)
158 COG4175 ProV ABC-type proline/ 100.0 3.5E-44 7.6E-49 358.0 18.4 238 17-265 3-253 (386)
159 PRK10744 pstB phosphate transp 100.0 5.1E-43 1.1E-47 358.2 27.4 222 15-265 10-243 (260)
160 TIGR03740 galliderm_ABC gallid 100.0 2.1E-43 4.5E-48 352.9 23.7 210 19-263 1-210 (223)
161 PRK13642 cbiO cobalt transport 100.0 7.9E-43 1.7E-47 360.0 28.4 221 18-265 4-228 (277)
162 PRK14274 phosphate ABC transpo 100.0 7.7E-43 1.7E-47 356.6 27.6 221 16-265 10-242 (259)
163 PRK14256 phosphate ABC transpo 100.0 9.5E-43 2.1E-47 354.5 27.9 219 18-264 4-234 (252)
164 cd03299 ABC_ModC_like Archeal 100.0 8.3E-43 1.8E-47 351.3 27.0 216 19-264 1-217 (235)
165 PRK14239 phosphate transporter 100.0 1E-42 2.2E-47 354.2 27.7 218 18-264 5-234 (252)
166 cd03297 ABC_ModC_molybdenum_tr 100.0 4.9E-43 1.1E-47 347.9 24.8 197 47-259 11-214 (214)
167 COG4181 Predicted ABC-type tra 100.0 8.1E-44 1.8E-48 326.9 17.5 215 17-257 5-226 (228)
168 TIGR01184 ntrCD nitrate transp 100.0 3.3E-43 7.2E-48 353.1 23.0 201 52-263 1-201 (230)
169 PRK14270 phosphate ABC transpo 100.0 1.2E-42 2.7E-47 353.5 27.4 219 17-264 3-233 (251)
170 PRK14272 phosphate ABC transpo 100.0 1.5E-42 3.3E-47 352.9 27.8 221 17-265 3-235 (252)
171 PRK11701 phnK phosphonate C-P 100.0 1.1E-42 2.4E-47 355.2 26.8 219 18-264 6-239 (258)
172 PRK14237 phosphate transporter 100.0 1.7E-42 3.7E-47 355.6 28.2 221 15-264 17-249 (267)
173 PRK14240 phosphate transporter 100.0 1.6E-42 3.6E-47 352.3 27.7 218 18-264 3-232 (250)
174 PRK14259 phosphate ABC transpo 100.0 9.3E-43 2E-47 357.9 26.1 220 15-265 10-252 (269)
175 PRK13549 xylose transporter AT 100.0 4.8E-43 1E-47 390.9 25.9 221 18-264 5-230 (506)
176 PRK14262 phosphate ABC transpo 100.0 1.7E-42 3.8E-47 352.1 27.3 219 18-265 3-233 (250)
177 PRK14253 phosphate ABC transpo 100.0 1.5E-42 3.1E-47 352.5 26.7 218 18-264 3-231 (249)
178 PRK14244 phosphate ABC transpo 100.0 1.7E-42 3.7E-47 352.5 26.4 218 19-264 6-235 (251)
179 PRK14258 phosphate ABC transpo 100.0 2.8E-42 6E-47 353.0 27.7 221 18-265 7-244 (261)
180 PRK14254 phosphate ABC transpo 100.0 3E-42 6.5E-47 356.8 28.3 228 4-264 27-267 (285)
181 PRK14248 phosphate ABC transpo 100.0 2.8E-42 6E-47 354.3 27.6 221 15-264 18-250 (268)
182 PRK10762 D-ribose transporter 100.0 9E-43 1.9E-47 388.3 25.5 219 18-264 4-228 (501)
183 COG4988 CydD ABC-type transpor 100.0 4.8E-43 1E-47 377.6 22.4 229 3-265 300-542 (559)
184 PRK14236 phosphate transporter 100.0 4.7E-42 1E-46 353.3 28.3 224 12-264 19-254 (272)
185 TIGR02982 heterocyst_DevA ABC 100.0 2.5E-42 5.5E-47 344.4 25.2 212 19-255 2-219 (220)
186 PRK14238 phosphate transporter 100.0 3.8E-42 8.3E-47 353.8 27.2 221 15-264 21-253 (271)
187 PRK14275 phosphate ABC transpo 100.0 4.9E-42 1.1E-46 355.5 28.0 222 15-265 36-269 (286)
188 PRK14261 phosphate ABC transpo 100.0 4.3E-42 9.4E-47 349.9 27.0 219 18-265 6-236 (253)
189 cd03233 ABC_PDR_domain1 The pl 100.0 2.4E-42 5.3E-47 340.1 24.4 197 18-259 3-202 (202)
190 PRK14260 phosphate ABC transpo 100.0 4.5E-42 9.7E-47 351.0 27.1 218 18-264 7-241 (259)
191 PRK14251 phosphate ABC transpo 100.0 4.3E-42 9.3E-47 349.5 26.9 218 18-264 4-233 (251)
192 PRK14255 phosphate ABC transpo 100.0 6.2E-42 1.3E-46 348.5 28.0 220 16-264 3-234 (252)
193 PRK10419 nikE nickel transport 100.0 4.2E-42 9.1E-47 352.9 26.7 228 18-264 3-239 (268)
194 TIGR02323 CP_lyasePhnK phospho 100.0 4.2E-42 9.1E-47 349.9 26.4 220 18-265 3-237 (253)
195 PRK10418 nikD nickel transport 100.0 4.1E-42 8.9E-47 350.3 26.0 218 18-265 4-229 (254)
196 PRK09700 D-allose transporter 100.0 1.9E-42 4.2E-47 386.5 25.6 219 18-264 5-232 (510)
197 PRK14249 phosphate ABC transpo 100.0 6E-42 1.3E-46 348.4 27.0 218 18-264 4-233 (251)
198 PRK14271 phosphate ABC transpo 100.0 7.4E-42 1.6E-46 352.4 27.9 221 16-265 19-250 (276)
199 COG4525 TauB ABC-type taurine 100.0 2.1E-42 4.5E-47 324.0 21.5 222 17-267 2-225 (259)
200 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-42 6.4E-47 384.7 26.7 214 17-264 10-227 (510)
201 PRK10247 putative ABC transpor 100.0 2.9E-42 6.4E-47 345.1 23.1 212 16-260 5-221 (225)
202 KOG0058 Peptide exporter, ABC 100.0 1.2E-42 2.6E-47 380.9 22.1 221 16-266 463-691 (716)
203 COG4604 CeuD ABC-type enteroch 100.0 1.1E-43 2.4E-48 333.1 11.8 221 18-265 1-224 (252)
204 TIGR03608 L_ocin_972_ABC putat 100.0 4.3E-42 9.4E-47 338.9 23.6 191 47-250 9-206 (206)
205 TIGR02770 nickel_nikD nickel i 100.0 5.1E-42 1.1E-46 344.5 24.3 206 51-265 1-214 (230)
206 COG1123 ATPase components of v 100.0 5.4E-42 1.2E-46 371.0 26.1 229 18-266 5-244 (539)
207 COG2274 SunT ABC-type bacterio 100.0 1.2E-42 2.7E-47 394.0 22.1 219 16-267 469-697 (709)
208 PRK15056 manganese/iron transp 100.0 6.3E-42 1.4E-46 352.3 24.9 220 17-264 5-228 (272)
209 PRK14265 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 350.3 27.0 220 15-265 17-257 (274)
210 PRK10261 glutathione transport 100.0 7.7E-42 1.7E-46 389.2 27.8 233 8-264 2-256 (623)
211 KOG0055 Multidrug/pheromone ex 100.0 2.5E-40 5.4E-45 381.0 40.1 220 15-266 347-576 (1228)
212 cd03252 ABCC_Hemolysin The ABC 100.0 2.6E-42 5.7E-47 348.0 20.8 214 19-265 1-224 (237)
213 PRK14257 phosphate ABC transpo 100.0 2.6E-41 5.5E-46 355.8 28.8 230 12-265 74-312 (329)
214 CHL00131 ycf16 sulfate ABC tra 100.0 2.5E-41 5.5E-46 344.0 27.8 224 16-264 5-239 (252)
215 PRK14243 phosphate transporter 100.0 1.4E-41 3E-46 348.4 26.0 217 18-265 10-247 (264)
216 PRK10261 glutathione transport 100.0 1.1E-41 2.4E-46 387.9 28.1 232 17-265 312-552 (623)
217 COG1123 ATPase components of v 100.0 8.3E-42 1.8E-46 369.5 25.6 234 15-265 277-518 (539)
218 TIGR02633 xylG D-xylose ABC tr 100.0 9E-42 1.9E-46 380.3 26.4 220 19-264 2-228 (500)
219 PRK14252 phosphate ABC transpo 100.0 2.9E-41 6.3E-46 346.2 27.9 231 5-264 3-247 (265)
220 PRK14266 phosphate ABC transpo 100.0 2.3E-41 5E-46 343.9 26.9 219 17-264 2-232 (250)
221 PRK13543 cytochrome c biogenes 100.0 1.1E-41 2.4E-46 338.4 23.9 205 15-252 8-212 (214)
222 PRK14246 phosphate ABC transpo 100.0 2.2E-41 4.7E-46 345.5 26.4 221 15-265 7-240 (257)
223 PRK11174 cysteine/glutathione 100.0 3.2E-42 7E-47 391.3 22.5 214 17-265 348-571 (588)
224 COG4598 HisP ABC-type histidin 100.0 9.2E-43 2E-47 322.1 14.5 210 44-264 14-239 (256)
225 PRK14263 phosphate ABC transpo 100.0 3.4E-41 7.4E-46 344.8 27.7 224 15-265 5-244 (261)
226 cd03251 ABCC_MsbA MsbA is an e 100.0 5.6E-42 1.2E-46 344.9 21.0 215 19-266 1-225 (234)
227 PRK15134 microcin C ABC transp 100.0 1.5E-41 3.3E-46 380.8 26.7 233 16-265 273-514 (529)
228 PRK13538 cytochrome c biogenes 100.0 1.4E-41 3.1E-46 335.0 23.0 200 18-250 1-202 (204)
229 TIGR03269 met_CoM_red_A2 methy 100.0 2E-41 4.3E-46 379.2 27.2 221 19-268 1-260 (520)
230 PRK11288 araG L-arabinose tran 100.0 2E-41 4.3E-46 377.4 26.7 216 18-261 4-224 (501)
231 TIGR01257 rim_protein retinal- 100.0 1.7E-41 3.6E-46 414.7 28.3 226 16-269 1935-2162(2272)
232 cd03213 ABCG_EPDR ABCG transpo 100.0 2.8E-41 6.2E-46 330.4 24.3 191 17-259 2-194 (194)
233 cd03232 ABC_PDR_domain2 The pl 100.0 2.8E-41 6E-46 329.9 24.1 190 17-259 2-192 (192)
234 TIGR03269 met_CoM_red_A2 methy 100.0 3E-41 6.6E-46 377.7 27.1 226 16-266 277-517 (520)
235 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.1E-41 2.3E-46 343.7 20.8 217 19-267 1-227 (238)
236 PRK10982 galactose/methyl gala 100.0 2E-41 4.3E-46 376.7 24.9 208 47-264 9-221 (491)
237 PRK15134 microcin C ABC transp 100.0 4.5E-41 9.7E-46 377.0 27.7 225 18-264 5-244 (529)
238 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-41 2.8E-46 392.7 23.9 212 18-265 451-672 (686)
239 PRK11176 lipid transporter ATP 100.0 1.2E-41 2.7E-46 386.1 23.2 216 18-265 341-566 (582)
240 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-41 2.6E-46 339.3 20.1 210 19-259 3-220 (220)
241 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-41 3.7E-46 340.2 20.9 216 18-265 2-225 (229)
242 KOG0057 Mitochondrial Fe/S clu 100.0 1.5E-41 3.2E-46 360.8 21.0 214 18-266 351-574 (591)
243 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.3E-41 1.1E-45 335.8 23.9 197 42-259 28-224 (224)
244 PRK10790 putative multidrug tr 100.0 2E-41 4.3E-46 385.0 23.5 214 17-265 339-562 (592)
245 cd03231 ABC_CcmA_heme_exporter 100.0 4E-41 8.8E-46 331.1 22.5 196 19-250 1-198 (201)
246 PRK09580 sufC cysteine desulfu 100.0 1.3E-40 2.9E-45 337.8 27.0 230 18-273 1-241 (248)
247 PRK09544 znuC high-affinity zi 100.0 6.6E-41 1.4E-45 340.6 23.9 202 18-264 4-207 (251)
248 PRK03695 vitamin B12-transport 100.0 6.5E-41 1.4E-45 340.3 23.6 200 51-264 11-220 (248)
249 PRK14264 phosphate ABC transpo 100.0 2E-40 4.3E-45 346.4 27.8 221 17-265 44-288 (305)
250 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-41 4E-46 392.9 21.8 215 17-266 476-700 (710)
251 COG1129 MglA ABC-type sugar tr 100.0 6.9E-41 1.5E-45 360.2 24.2 219 15-261 5-229 (500)
252 PRK13549 xylose transporter AT 100.0 5.6E-41 1.2E-45 374.3 24.4 225 16-264 257-492 (506)
253 COG4987 CydC ABC-type transpor 100.0 9.4E-42 2E-46 362.1 16.9 216 18-266 336-561 (573)
254 cd03230 ABC_DR_subfamily_A Thi 100.0 8E-41 1.7E-45 321.3 21.9 171 19-255 1-173 (173)
255 PRK13539 cytochrome c biogenes 100.0 8.2E-41 1.8E-45 330.4 22.6 199 18-252 2-200 (207)
256 TIGR00958 3a01208 Conjugate Tr 100.0 4.2E-41 9.2E-46 389.0 23.2 216 17-266 477-702 (711)
257 cd03253 ABCC_ATM1_transporter 100.0 5.3E-41 1.2E-45 338.2 21.0 213 19-265 1-223 (236)
258 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.5E-41 1.4E-45 344.3 21.7 216 18-266 2-225 (275)
259 PRK11160 cysteine/glutathione 100.0 9.6E-41 2.1E-45 377.6 24.9 216 17-265 337-561 (574)
260 COG4172 ABC-type uncharacteriz 100.0 2.2E-40 4.7E-45 339.5 24.5 245 4-265 262-515 (534)
261 TIGR03375 type_I_sec_LssB type 100.0 6.3E-41 1.4E-45 387.4 22.8 219 17-268 462-690 (694)
262 PRK09700 D-allose transporter 100.0 1.2E-40 2.6E-45 372.0 24.4 215 17-261 264-493 (510)
263 PRK13546 teichoic acids export 100.0 6.5E-40 1.4E-44 335.4 27.7 229 16-266 2-232 (264)
264 TIGR01189 ccmA heme ABC export 100.0 1.7E-40 3.7E-45 325.8 22.2 195 19-249 1-197 (198)
265 cd03229 ABC_Class3 This class 100.0 1.3E-40 2.8E-45 321.2 20.8 173 19-254 1-178 (178)
266 COG4161 ArtP ABC-type arginine 100.0 6.1E-41 1.3E-45 305.0 17.2 217 18-263 2-227 (242)
267 cd03244 ABCC_MRP_domain2 Domai 100.0 9.1E-41 2E-45 333.2 20.2 211 18-260 2-220 (221)
268 COG0396 sufC Cysteine desulfur 100.0 5.3E-40 1.2E-44 316.4 24.5 233 17-276 2-243 (251)
269 cd03288 ABCC_SUR2 The SUR doma 100.0 1.3E-40 2.9E-45 339.8 21.6 227 7-265 3-242 (257)
270 PRK10938 putative molybdenum t 100.0 1.2E-40 2.5E-45 370.5 22.8 209 18-264 3-222 (490)
271 TIGR01193 bacteriocin_ABC ABC- 100.0 6.2E-41 1.3E-45 388.3 21.3 215 18-266 473-697 (708)
272 PRK13540 cytochrome c biogenes 100.0 2.7E-40 5.8E-45 325.0 22.3 195 18-248 1-197 (200)
273 cd03248 ABCC_TAP TAP, the Tran 100.0 8.7E-41 1.9E-45 334.5 19.0 211 15-255 8-226 (226)
274 COG1132 MdlB ABC-type multidru 100.0 1.3E-40 2.7E-45 376.6 22.6 218 15-266 325-552 (567)
275 TIGR02324 CP_lyasePhnL phospho 100.0 4.1E-40 8.9E-45 329.2 23.6 211 18-251 1-223 (224)
276 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-40 3E-45 377.8 22.8 214 18-265 334-557 (588)
277 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.9E-40 8.3E-45 323.9 22.7 191 19-269 1-196 (200)
278 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-40 5.5E-45 368.7 24.0 223 17-263 256-489 (500)
279 TIGR01166 cbiO cobalt transpor 100.0 4.1E-40 8.9E-45 321.0 21.6 178 48-237 4-188 (190)
280 COG4148 ModC ABC-type molybdat 100.0 3.3E-41 7.2E-46 331.5 13.8 196 54-266 16-218 (352)
281 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.2E-40 1.1E-44 324.6 21.5 201 16-261 4-207 (207)
282 TIGR02203 MsbA_lipidA lipid A 100.0 2.3E-40 5.1E-45 374.8 21.4 216 18-265 330-555 (571)
283 PRK10762 D-ribose transporter 100.0 8.5E-40 1.8E-44 364.4 25.1 204 51-264 267-482 (501)
284 cd03214 ABC_Iron-Siderophores_ 100.0 3.1E-40 6.8E-45 319.2 18.7 177 20-259 1-180 (180)
285 TIGR01842 type_I_sec_PrtD type 100.0 7E-40 1.5E-44 368.6 24.2 217 17-265 315-541 (544)
286 cd03215 ABC_Carb_Monos_II This 100.0 1E-39 2.2E-44 316.2 21.6 161 51-255 15-182 (182)
287 PRK13545 tagH teichoic acids e 100.0 3.1E-39 6.7E-44 350.9 27.8 197 49-267 37-233 (549)
288 COG4619 ABC-type uncharacteriz 100.0 2.9E-41 6.3E-46 309.2 9.3 195 47-255 14-212 (223)
289 TIGR02204 MsbA_rel ABC transpo 100.0 5.9E-40 1.3E-44 371.9 22.2 217 17-265 336-562 (576)
290 TIGR03771 anch_rpt_ABC anchore 100.0 1.2E-39 2.5E-44 325.9 21.5 195 57-264 1-199 (223)
291 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-39 2.3E-44 314.9 20.3 176 19-259 1-178 (178)
292 TIGR01846 type_I_sec_HlyB type 100.0 6.8E-40 1.5E-44 378.7 22.2 216 17-265 454-679 (694)
293 cd03246 ABCC_Protease_Secretio 100.0 1.1E-39 2.4E-44 313.3 19.8 170 19-255 1-173 (173)
294 TIGR01187 potA spermidine/putr 100.0 1.7E-39 3.7E-44 342.1 22.7 188 67-265 1-189 (325)
295 PRK11288 araG L-arabinose tran 100.0 1.4E-39 2.9E-44 362.7 22.3 205 50-264 267-483 (501)
296 TIGR01192 chvA glucan exporter 100.0 1.5E-39 3.2E-44 368.5 23.0 214 18-265 334-557 (585)
297 COG3845 ABC-type uncharacteriz 100.0 1.9E-39 4E-44 342.3 22.0 216 17-260 3-223 (501)
298 COG4674 Uncharacterized ABC-ty 100.0 4E-40 8.6E-45 308.7 14.9 220 17-265 4-234 (249)
299 PRK10789 putative multidrug tr 100.0 1.6E-39 3.4E-44 367.5 22.3 215 18-265 313-537 (569)
300 PRK10535 macrolide transporter 100.0 3.4E-38 7.3E-43 360.6 32.4 220 18-264 4-230 (648)
301 PRK15439 autoinducer 2 ABC tra 100.0 4.5E-39 9.8E-44 359.1 22.6 204 51-264 278-490 (510)
302 PTZ00265 multidrug resistance 100.0 2.1E-39 4.5E-44 395.8 21.3 220 18-265 1165-1451(1466)
303 COG1119 ModF ABC-type molybden 100.0 3E-39 6.5E-44 314.8 17.9 219 15-260 28-256 (257)
304 cd03250 ABCC_MRP_domain1 Domai 100.0 4E-39 8.6E-44 317.6 18.2 194 19-254 1-204 (204)
305 PRK13541 cytochrome c biogenes 100.0 1.6E-38 3.4E-43 311.2 22.0 193 18-248 1-193 (195)
306 PRK10938 putative molybdenum t 100.0 8.1E-39 1.7E-43 355.7 22.5 219 15-259 257-485 (490)
307 KOG0055 Multidrug/pheromone ex 100.0 5E-39 1.1E-43 370.3 21.2 217 18-266 987-1213(1228)
308 COG4618 ArpD ABC-type protease 100.0 9.4E-39 2E-43 336.4 21.3 238 3-270 319-564 (580)
309 COG4586 ABC-type uncharacteriz 100.0 2.6E-39 5.7E-44 317.6 15.9 242 17-269 2-249 (325)
310 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-38 2.5E-43 305.7 19.6 168 19-254 1-171 (171)
311 TIGR02868 CydC thiol reductant 100.0 5.7E-39 1.2E-43 360.3 19.5 188 17-236 333-529 (529)
312 cd03290 ABCC_SUR1_N The SUR do 100.0 2E-38 4.4E-43 315.7 20.7 190 48-254 13-218 (218)
313 cd03216 ABC_Carb_Monos_I This 100.0 3.6E-38 7.8E-43 300.0 21.3 158 19-257 1-162 (163)
314 PRK15064 ABC transporter ATP-b 100.0 3E-38 6.4E-43 354.3 24.3 209 18-265 1-241 (530)
315 PRK11819 putative ABC transpor 100.0 4.1E-38 8.8E-43 354.8 23.9 208 17-264 5-248 (556)
316 PLN03232 ABC transporter C fam 100.0 1.9E-38 4E-43 390.4 22.8 215 17-265 1233-1457(1495)
317 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.3E-38 1.1E-42 318.2 22.0 189 51-263 9-204 (246)
318 PRK10522 multidrug transporter 100.0 4E-38 8.7E-43 354.5 23.4 207 17-258 321-530 (547)
319 PLN03130 ABC transporter C fam 100.0 2.8E-38 6E-43 389.3 23.7 216 17-266 1236-1461(1622)
320 TIGR02857 CydD thiol reductant 100.0 1.7E-38 3.8E-43 356.4 20.1 200 18-250 320-529 (529)
321 PRK10982 galactose/methyl gala 100.0 4.4E-38 9.5E-43 349.9 22.7 216 17-262 249-476 (491)
322 PRK15177 Vi polysaccharide exp 100.0 4.5E-38 9.8E-43 312.2 20.1 195 50-270 1-196 (213)
323 PRK15064 ABC transporter ATP-b 100.0 6.1E-38 1.3E-42 351.8 23.7 203 17-265 318-524 (530)
324 COG4172 ABC-type uncharacteriz 100.0 9.8E-38 2.1E-42 320.0 21.7 231 15-264 3-245 (534)
325 TIGR01194 cyc_pep_trnsptr cycl 100.0 6.6E-38 1.4E-42 353.1 22.6 212 17-258 336-551 (555)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-37 2.8E-42 350.5 24.6 210 17-265 3-247 (552)
327 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-37 2.3E-42 297.6 20.2 163 19-253 1-163 (166)
328 cd03291 ABCC_CFTR1 The CFTR su 100.0 4E-37 8.7E-42 317.3 24.7 203 15-265 36-246 (282)
329 COG4608 AppF ABC-type oligopep 100.0 1.7E-37 3.6E-42 308.8 20.4 195 17-265 3-198 (268)
330 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-37 3.3E-42 382.9 23.4 217 16-266 1282-1508(1522)
331 PTZ00243 ABC transporter; Prov 100.0 1.8E-37 3.9E-42 381.5 23.3 215 17-265 1307-1532(1560)
332 KOG0056 Heavy metal exporter H 100.0 6E-38 1.3E-42 326.6 16.0 230 7-266 525-761 (790)
333 PTZ00265 multidrug resistance 100.0 1.4E-37 3E-42 379.9 21.7 214 18-253 382-655 (1466)
334 PRK13409 putative ATPase RIL; 100.0 4.7E-37 1E-41 346.1 23.7 200 16-261 338-537 (590)
335 PRK11819 putative ABC transpor 100.0 1E-36 2.2E-41 343.5 25.0 205 16-263 322-530 (556)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.5E-36 3.3E-41 341.8 25.0 205 16-263 320-528 (552)
337 TIGR01271 CFTR_protein cystic 100.0 9.3E-37 2E-41 374.9 24.4 215 16-265 1215-1439(1490)
338 COG1101 PhnK ABC-type uncharac 100.0 7.8E-37 1.7E-41 290.9 16.9 204 47-259 17-231 (263)
339 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.4E-36 3E-41 309.2 18.9 190 50-259 15-220 (255)
340 PRK10636 putative ABC transpor 100.0 4.7E-36 1E-40 342.2 24.7 205 15-266 309-517 (638)
341 PRK11147 ABC transporter ATPas 100.0 1.1E-35 2.4E-40 339.7 23.5 206 16-264 317-526 (635)
342 COG4167 SapF ABC-type antimicr 100.0 7E-36 1.5E-40 277.2 17.3 229 18-265 4-238 (267)
343 PLN03073 ABC transporter F fam 100.0 4.8E-35 1E-39 335.6 26.4 208 16-267 506-715 (718)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-35 5.6E-40 274.5 18.9 144 19-254 1-144 (144)
345 PRK10636 putative ABC transpor 100.0 4.2E-35 9.1E-40 334.4 23.6 206 18-263 1-233 (638)
346 KOG0059 Lipid exporter ABCA1 a 100.0 1.2E-35 2.7E-40 348.7 19.8 208 51-270 580-791 (885)
347 COG4136 ABC-type uncharacteriz 100.0 1.7E-35 3.8E-40 266.5 15.6 193 18-237 2-196 (213)
348 cd03222 ABC_RNaseL_inhibitor T 100.0 2.6E-35 5.6E-40 283.0 17.7 149 45-262 9-159 (177)
349 PLN03232 ABC transporter C fam 100.0 3.2E-35 7E-40 361.8 22.3 206 18-265 614-827 (1495)
350 COG1134 TagH ABC-type polysacc 100.0 2.8E-34 6.1E-39 280.4 23.6 232 17-270 2-240 (249)
351 TIGR00954 3a01203 Peroxysomal 100.0 3.5E-35 7.5E-40 336.2 20.0 200 18-252 451-653 (659)
352 PLN03130 ABC transporter C fam 100.0 6.7E-35 1.5E-39 359.4 22.7 206 17-265 613-827 (1622)
353 PRK11147 ABC transporter ATPas 100.0 1.7E-34 3.6E-39 329.9 24.1 205 18-263 3-240 (635)
354 cd03238 ABC_UvrA The excision 100.0 1.6E-34 3.5E-39 277.3 19.2 158 47-255 6-166 (176)
355 COG4133 CcmA ABC-type transpor 100.0 8.5E-35 1.9E-39 272.2 15.0 178 47-238 13-192 (209)
356 COG4107 PhnK ABC-type phosphon 100.0 1.6E-34 3.4E-39 266.2 14.7 217 18-265 6-240 (258)
357 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1E-33 2.2E-38 267.5 19.7 144 48-254 11-157 (157)
358 PRK13409 putative ATPase RIL; 100.0 2.9E-34 6.3E-39 323.5 17.4 189 42-253 79-287 (590)
359 TIGR00957 MRP_assoc_pro multi 100.0 8.9E-34 1.9E-38 349.6 23.2 209 18-265 636-849 (1522)
360 COG5265 ATM1 ABC-type transpor 100.0 2E-34 4.4E-39 297.6 14.3 218 17-266 261-486 (497)
361 TIGR01271 CFTR_protein cystic 100.0 5.4E-33 1.2E-37 341.8 22.9 189 49-265 439-635 (1490)
362 PLN03073 ABC transporter F fam 100.0 6.2E-33 1.3E-37 318.2 17.6 219 14-264 173-429 (718)
363 COG0488 Uup ATPase components 100.0 2E-32 4.3E-37 301.8 19.2 207 17-263 2-237 (530)
364 KOG0054 Multidrug resistance-a 100.0 5.1E-31 1.1E-35 310.9 30.9 215 11-265 511-730 (1381)
365 PTZ00243 ABC transporter; Prov 100.0 5.3E-32 1.2E-36 333.3 21.0 192 47-265 671-869 (1560)
366 KOG0054 Multidrug resistance-a 100.0 2.3E-31 5E-36 313.8 21.3 223 10-266 1130-1362(1381)
367 cd03270 ABC_UvrA_I The excisio 100.0 4.9E-31 1.1E-35 264.1 20.5 192 47-259 6-226 (226)
368 PF00005 ABC_tran: ABC transpo 100.0 2.2E-31 4.7E-36 245.2 13.5 134 52-204 1-137 (137)
369 COG4778 PhnL ABC-type phosphon 100.0 2.8E-31 6.1E-36 244.0 12.9 214 17-252 3-227 (235)
370 cd03271 ABC_UvrA_II The excisi 100.0 3.2E-30 6.9E-35 261.9 19.1 196 49-261 8-261 (261)
371 COG0488 Uup ATPase components 100.0 9.3E-30 2E-34 280.6 21.7 205 14-265 317-524 (530)
372 COG4138 BtuD ABC-type cobalami 100.0 4.8E-31 1E-35 243.4 6.8 195 52-264 15-219 (248)
373 COG1129 MglA ABC-type sugar tr 100.0 4.6E-29 1E-33 268.9 21.0 202 51-262 274-486 (500)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 5.5E-30 1.2E-34 251.1 12.2 166 53-252 14-190 (197)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.1E-28 4.5E-33 247.6 12.7 187 45-251 11-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.1E-29 1.1E-33 246.9 1.3 180 45-252 13-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.4E-28 1.8E-32 244.6 9.8 179 62-251 25-242 (251)
378 COG4615 PvdE ABC-type sideroph 99.9 9.4E-28 2E-32 245.9 9.0 208 16-259 320-530 (546)
379 COG3845 ABC-type uncharacteriz 99.9 5.2E-26 1.1E-30 240.7 21.5 227 11-264 250-490 (501)
380 COG4178 ABC-type uncharacteriz 99.9 1.7E-26 3.7E-31 253.6 17.1 198 16-251 390-587 (604)
381 cd03240 ABC_Rad50 The catalyti 99.9 6.5E-27 1.4E-31 230.6 12.4 166 55-252 16-197 (204)
382 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.5E-27 2.1E-31 231.1 12.8 180 53-254 18-210 (213)
383 COG4170 SapD ABC-type antimicr 99.9 3.5E-26 7.5E-31 216.9 11.5 231 18-266 3-248 (330)
384 PRK00635 excinuclease ABC subu 99.9 3.2E-25 6.9E-30 268.4 22.8 136 120-265 759-905 (1809)
385 KOG0927 Predicted transporter 99.9 4.4E-26 9.6E-31 242.2 11.8 214 6-265 378-595 (614)
386 PRK00349 uvrA excinuclease ABC 99.9 6.6E-25 1.4E-29 255.9 21.2 125 124-265 792-926 (943)
387 KOG0927 Predicted transporter 99.9 9.4E-25 2E-29 232.1 13.4 224 11-264 68-307 (614)
388 COG1245 Predicted ATPase, RNas 99.9 3.9E-24 8.4E-29 223.0 17.7 175 51-251 356-530 (591)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.7E-24 5.9E-29 210.9 15.0 169 52-254 12-192 (198)
390 TIGR00630 uvra excinuclease AB 99.9 9.6E-24 2.1E-28 245.8 21.9 125 123-264 789-923 (924)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.4E-24 1.2E-28 216.1 7.5 182 60-252 21-233 (247)
392 KOG2355 Predicted ABC-type tra 99.9 1.8E-22 3.8E-27 191.3 15.3 218 11-266 6-237 (291)
393 KOG0060 Long-chain acyl-CoA tr 99.9 2.5E-22 5.5E-27 215.1 16.8 210 12-252 427-641 (659)
394 KOG0062 ATPase component of AB 99.9 1.7E-22 3.7E-27 213.9 10.9 208 10-264 72-283 (582)
395 PF01061 ABC2_membrane: ABC-2 99.9 1.9E-23 4.1E-28 204.6 1.1 208 334-546 1-210 (210)
396 KOG0066 eIF2-interacting prote 99.9 1.3E-21 2.9E-26 202.4 12.4 192 16-253 584-777 (807)
397 KOG0062 ATPase component of AB 99.9 2.8E-21 6E-26 204.8 14.4 209 11-263 355-566 (582)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 4.1E-21 8.8E-26 190.5 13.8 80 174-254 125-211 (213)
399 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.9E-21 4.1E-26 191.2 10.6 147 51-259 16-172 (200)
400 COG1245 Predicted ATPase, RNas 99.8 2.7E-21 5.9E-26 201.9 10.5 170 59-252 97-288 (591)
401 COG2401 ABC-type ATPase fused 99.8 6.2E-20 1.3E-24 189.7 12.5 187 45-256 392-588 (593)
402 cd03241 ABC_RecN RecN ATPase i 99.8 4.5E-19 9.6E-24 183.0 15.9 75 175-253 170-248 (276)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.2E-20 1.3E-24 183.2 9.1 155 47-260 15-175 (222)
404 cd03239 ABC_SMC_head The struc 99.8 5.1E-19 1.1E-23 170.6 15.0 74 176-252 95-172 (178)
405 PRK00635 excinuclease ABC subu 99.8 8.5E-19 1.8E-23 213.1 20.4 196 51-266 1505-1796(1809)
406 cd03283 ABC_MutS-like MutS-lik 99.8 1E-19 2.2E-24 178.6 9.8 148 48-250 13-163 (199)
407 COG0178 UvrA Excinuclease ATPa 99.8 3.1E-18 6.7E-23 190.0 19.4 128 123-266 783-919 (935)
408 KOG0064 Peroxisomal long-chain 99.8 3.1E-19 6.7E-24 189.1 10.7 178 47-248 493-679 (728)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 6.3E-19 1.4E-23 167.5 10.2 75 175-252 77-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.8 7.3E-18 1.6E-22 197.2 15.1 135 121-265 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 1.5E-17 3.2E-22 194.3 15.7 135 121-265 432-582 (924)
412 cd03243 ABC_MutS_homologs The 99.7 2.7E-18 5.9E-23 169.0 7.1 155 54-263 21-176 (202)
413 KOG0066 eIF2-interacting prote 99.7 1.7E-18 3.7E-23 179.5 3.7 217 15-261 261-494 (807)
414 cd03242 ABC_RecF RecF is a rec 99.7 1.2E-16 2.5E-21 164.5 16.4 76 174-255 182-269 (270)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 2.1E-17 4.6E-22 162.7 9.1 138 47-237 14-152 (204)
416 KOG0063 RNAse L inhibitor, ABC 99.6 1.5E-15 3.3E-20 157.9 13.5 178 49-251 349-531 (592)
417 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.1E-15 2.5E-20 151.9 10.5 158 48-264 17-179 (216)
418 TIGR02858 spore_III_AA stage I 99.6 1.4E-15 3.1E-20 155.4 11.4 139 63-263 112-266 (270)
419 smart00534 MUTSac ATPase domai 99.5 4.4E-15 9.5E-20 144.2 6.1 80 175-257 61-141 (185)
420 PRK00064 recF recombination pr 99.5 2.4E-13 5.2E-18 145.5 18.3 78 173-255 271-359 (361)
421 TIGR01247 drrB daunorubicin re 99.5 7.3E-12 1.6E-16 126.1 24.8 228 342-601 1-234 (236)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.2E-14 2.6E-19 144.8 3.8 88 148-251 121-212 (220)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.5 2.6E-13 5.7E-18 134.7 12.6 132 50-238 17-156 (213)
424 KOG0063 RNAse L inhibitor, ABC 99.5 6.1E-14 1.3E-18 146.1 7.2 165 60-251 98-287 (592)
425 cd00820 PEPCK_HprK Phosphoenol 99.5 9.6E-14 2.1E-18 121.5 6.3 74 49-133 2-78 (107)
426 TIGR01069 mutS2 MutS2 family p 99.5 1.3E-13 2.9E-18 159.7 9.5 130 55-238 314-447 (771)
427 TIGR01291 nodJ ABC-2 type tran 99.4 1.4E-10 2.9E-15 118.4 27.0 238 336-606 7-250 (253)
428 PRK07721 fliI flagellum-specif 99.4 5.2E-12 1.1E-16 137.3 16.3 175 48-263 145-340 (438)
429 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 1.6E-11 3.5E-16 121.2 17.5 150 426-607 58-207 (208)
430 TIGR00025 Mtu_efflux ABC trans 99.4 1.6E-10 3.4E-15 116.3 25.0 222 348-604 2-229 (232)
431 cd03287 ABC_MSH3_euk MutS3 hom 99.4 3.4E-12 7.4E-17 127.2 12.1 136 48-238 17-156 (222)
432 PTZ00132 GTP-binding nuclear p 99.3 2.5E-12 5.5E-17 127.6 8.5 45 179-223 156-205 (215)
433 TIGR03861 phenyl_ABC_PedC alco 99.3 9E-10 2E-14 112.2 27.4 237 333-605 1-250 (253)
434 PRK00409 recombination and DNA 99.3 2.4E-12 5.3E-17 149.6 6.7 80 175-258 390-470 (782)
435 TIGR00634 recN DNA repair prot 99.3 5.8E-12 1.3E-16 142.5 8.9 77 174-254 439-519 (563)
436 cd01128 rho_factor Transcripti 99.3 8.2E-13 1.8E-17 133.7 1.2 174 57-255 11-211 (249)
437 PRK10869 recombination and rep 99.3 1.4E-11 3E-16 138.6 9.6 76 174-253 429-508 (553)
438 cd03286 ABC_MSH6_euk MutS6 hom 99.3 1.2E-11 2.5E-16 123.1 7.9 137 48-238 16-155 (218)
439 COG0178 UvrA Excinuclease ATPa 99.2 8.6E-11 1.9E-15 131.5 15.1 136 121-265 426-576 (935)
440 PHA02562 46 endonuclease subun 99.2 1.4E-11 3E-16 139.8 8.8 78 173-255 466-555 (562)
441 TIGR00618 sbcc exonuclease Sbc 99.2 2.1E-11 4.5E-16 147.4 10.7 80 172-253 947-1036(1042)
442 PF13304 AAA_21: AAA domain; P 99.2 2.3E-11 5E-16 121.2 6.9 62 175-237 236-300 (303)
443 PRK15066 inner membrane transp 99.2 2.3E-08 4.9E-13 102.3 28.3 242 332-607 6-253 (257)
444 PRK08533 flagellar accessory p 99.2 2E-10 4.3E-15 115.5 12.5 150 58-251 20-184 (230)
445 cd01124 KaiC KaiC is a circadi 99.2 3.1E-10 6.7E-15 109.7 13.3 146 64-251 1-163 (187)
446 PRK13695 putative NTPase; Prov 99.1 2.6E-11 5.6E-16 116.5 3.2 78 175-259 78-157 (174)
447 TIGR02788 VirB11 P-type DNA tr 99.1 3.5E-10 7.6E-15 118.7 9.8 142 55-265 137-280 (308)
448 cd01120 RecA-like_NTPases RecA 99.1 4.5E-10 9.7E-15 105.1 9.3 62 176-238 68-139 (165)
449 PRK01156 chromosome segregatio 99.1 9.8E-10 2.1E-14 131.4 13.2 102 148-251 764-883 (895)
450 PRK13830 conjugal transfer pro 99.0 2.7E-09 5.9E-14 125.5 16.0 69 191-261 650-728 (818)
451 PRK03918 chromosome segregatio 99.0 4.4E-10 9.5E-15 134.2 9.2 78 172-252 785-868 (880)
452 COG3910 Predicted ATPase [Gene 99.0 3.4E-09 7.4E-14 100.3 12.9 63 173-237 127-189 (233)
453 PRK10246 exonuclease subunit S 99.0 1.1E-09 2.3E-14 132.3 10.1 78 173-252 947-1032(1047)
454 TIGR00606 rad50 rad50. This fa 99.0 9.4E-10 2E-14 135.9 9.4 70 174-244 1198-1277(1311)
455 PRK06793 fliI flagellum-specif 99.0 1.7E-09 3.6E-14 117.0 10.0 156 48-260 143-305 (432)
456 COG0842 ABC-type multidrug tra 98.9 4E-07 8.7E-12 92.8 23.2 166 415-609 119-285 (286)
457 TIGR03238 dnd_assoc_3 dnd syst 98.9 7.7E-10 1.7E-14 119.5 3.1 51 49-103 19-70 (504)
458 cd01125 repA Hexameric Replica 98.9 1.1E-08 2.3E-13 103.5 11.3 137 62-237 1-160 (239)
459 TIGR02168 SMC_prok_B chromosom 98.8 3.2E-09 7E-14 130.2 7.4 76 172-251 1086-1165(1179)
460 cd01131 PilT Pilus retraction 98.8 1.4E-08 3E-13 99.8 10.0 57 185-251 66-122 (198)
461 PRK06067 flagellar accessory p 98.8 7E-08 1.5E-12 97.2 14.3 164 49-252 11-187 (234)
462 PRK06995 flhF flagellar biosyn 98.8 2E-08 4.2E-13 110.3 9.5 150 51-234 245-400 (484)
463 PRK02224 chromosome segregatio 98.8 1.5E-08 3.3E-13 121.1 8.9 78 173-252 779-868 (880)
464 smart00382 AAA ATPases associa 98.7 3.3E-07 7.1E-12 82.4 15.3 119 61-234 1-124 (148)
465 TIGR02169 SMC_prok_A chromosom 98.7 1.5E-08 3.2E-13 124.5 8.3 76 173-252 1072-1151(1164)
466 TIGR03881 KaiC_arch_4 KaiC dom 98.6 4.8E-08 1E-12 98.0 6.3 166 51-251 8-188 (229)
467 PRK13891 conjugal transfer pro 98.6 3.5E-07 7.5E-12 108.4 13.8 69 186-256 680-751 (852)
468 cd01130 VirB11-like_ATPase Typ 98.6 1.1E-07 2.4E-12 92.4 7.9 83 51-135 14-98 (186)
469 TIGR01026 fliI_yscN ATPase Fli 98.6 4.6E-07 1E-11 99.0 13.5 173 48-263 150-345 (440)
470 PRK07196 fliI flagellum-specif 98.6 6.2E-08 1.3E-12 105.0 6.4 172 48-258 142-333 (434)
471 TIGR01248 drrC daunorubicin re 98.6 1.8E-06 4E-11 81.1 15.6 129 411-542 16-146 (152)
472 TIGR02655 circ_KaiC circadian 98.6 3.2E-09 6.9E-14 118.1 -3.7 168 49-251 7-190 (484)
473 TIGR00611 recf recF protein. A 98.6 8.9E-08 1.9E-12 102.7 7.0 60 174-237 274-342 (365)
474 PRK06002 fliI flagellum-specif 98.5 2.6E-07 5.6E-12 100.4 9.3 85 15-119 136-230 (450)
475 TIGR01420 pilT_fam pilus retra 98.5 5.2E-07 1.1E-11 96.2 11.0 124 59-250 119-242 (343)
476 PRK05399 DNA mismatch repair p 98.5 2.3E-07 5E-12 109.6 8.8 139 49-246 595-738 (854)
477 PRK14079 recF recombination pr 98.5 2.8E-07 6E-12 98.4 8.1 76 174-258 262-346 (349)
478 cd02023 UMPK Uridine monophosp 98.4 2.1E-07 4.6E-12 91.2 5.3 113 64-208 1-113 (198)
479 COG0419 SbcC ATPase involved i 98.4 6.8E-07 1.5E-11 107.1 9.6 78 172-252 812-897 (908)
480 PRK09825 idnK D-gluconate kina 98.3 3.4E-07 7.4E-12 88.2 3.8 66 61-132 2-69 (176)
481 PRK13898 type IV secretion sys 98.3 1.5E-05 3.2E-10 94.4 18.1 49 189-238 638-687 (800)
482 cd01122 GP4d_helicase GP4d_hel 98.3 4.4E-06 9.6E-11 85.9 11.8 162 48-236 16-191 (271)
483 PLN03210 Resistant to P. syrin 98.3 1.9E-06 4.2E-11 105.7 10.0 164 54-273 199-365 (1153)
484 TIGR03518 ABC_perm_GldF glidin 98.3 0.00038 8.3E-09 70.5 25.1 219 337-605 2-239 (240)
485 TIGR02680 conserved hypothetic 98.3 9.9E-07 2.1E-11 109.1 7.5 59 174-236 1246-1316(1353)
486 PRK01889 GTPase RsgA; Reviewed 98.2 2.1E-06 4.5E-11 91.9 6.9 107 52-165 185-291 (356)
487 COG1682 TagG ABC-type polysacc 98.2 0.0015 3.2E-08 67.0 27.3 205 331-549 15-227 (263)
488 PF06422 PDR_CDR: CDR ABC tran 98.2 2.5E-06 5.5E-11 74.7 5.6 58 553-610 17-77 (103)
489 TIGR00416 sms DNA repair prote 98.2 5.2E-06 1.1E-10 91.5 9.2 63 192-254 169-247 (454)
490 PF13555 AAA_29: P-loop contai 98.2 2.5E-06 5.4E-11 67.2 4.4 37 52-88 12-49 (62)
491 PRK00454 engB GTP-binding prot 98.1 7.3E-07 1.6E-11 86.6 1.7 66 149-224 126-195 (196)
492 PF12679 ABC2_membrane_2: ABC- 98.1 0.00091 2E-08 68.4 24.5 164 414-605 88-274 (277)
493 cd01876 YihA_EngB The YihA (En 98.1 5.2E-06 1.1E-10 77.5 7.1 64 148-221 100-169 (170)
494 PRK13873 conjugal transfer ATP 98.1 4E-05 8.6E-10 90.9 14.9 47 190-237 632-679 (811)
495 TIGR02524 dot_icm_DotB Dot/Icm 98.1 4.7E-06 1E-10 89.1 6.4 73 60-132 132-207 (358)
496 PRK10078 ribose 1,5-bisphospho 98.1 3.8E-06 8.2E-11 81.6 5.0 37 62-103 2-38 (186)
497 TIGR02903 spore_lon_C ATP-depe 98.1 9E-06 2E-10 93.0 8.9 112 61-220 174-291 (615)
498 PF13558 SbcCD_C: Putative exo 98.1 7.5E-06 1.6E-10 69.9 6.2 46 175-220 32-90 (90)
499 PRK06315 type III secretion sy 98.1 8.2E-06 1.8E-10 88.9 7.7 110 48-160 151-277 (442)
500 PRK08149 ATP synthase SpaL; Va 98.1 8.2E-06 1.8E-10 88.5 7.5 178 47-259 137-329 (428)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-110 Score=943.53 Aligned_cols=580 Identities=43% Similarity=0.698 Sum_probs=518.2
Q ss_pred CCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cee
Q 046991 14 KALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVS 92 (612)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~ 92 (612)
...+.++|+|++++.+.+ ....+++|+|||++++|||++|||||||||||||||+|+|+...+ ..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~-------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~ 87 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLS 87 (613)
T ss_pred cccceeEEEEEEEEecCC-------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcce
Confidence 367789999999988422 114688999999999999999999999999999999999999864 689
Q ss_pred eEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 93 GKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 93 G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
|+|++||++.+.+.+++.+|||.|||.++|++||+|+|.|+|.+|+|.. ++++++++|+++++++||.+++|+.+| +.
T Consensus 88 G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig-~~ 166 (613)
T KOG0061|consen 88 GEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG-NP 166 (613)
T ss_pred EEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec-CC
Confidence 9999999988888999999999999999999999999999999999876 788999999999999999999999999 66
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
..|++||||||||+||.+|++||++|+|||||||||+.++.++++.|+++|++ |+|||+|+|||+.+++++||++++|+
T Consensus 167 ~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 167 GIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLS 245 (613)
T ss_pred CCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence 66999999999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHHhhhhh--hccchhhhhhc---cch--hh--HHHHHhhccCh-hh
Q 046991 252 NGFVVHNGTLNHLEERLKSAGHCIPRHVNVLEFAIDVIESF--VIQTSETLKTA---NDK--DD--LKLRVAYSNNF-EE 321 (612)
Q Consensus 252 ~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~--~~~~~~~~~~~---~~~--~~--~~~~~~~~~~~-~~ 321 (612)
+|+++|+|+++++.+||.+.|++||++.||+||++|+++.. .....+..+.. ... .+ .+...+..+.. ..
T Consensus 246 ~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 246 EGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred CCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 99999999999999999999999999999999999998743 11111100000 000 00 00000011110 01
Q ss_pred hhhccCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 046991 322 KRKLLSYPNSHVQEVLILGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFSLTFLLSS 401 (612)
Q Consensus 322 ~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~~~~~~~~ 401 (612)
++......++||.|+++|++|.+++.+|||.+...|+++.+.+|+++|.+||++++ +..+++++.|++||.+.++.+.
T Consensus 326 ~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~--~~~~~~~~~g~~~~~~~~~~f~ 403 (613)
T KOG0061|consen 326 KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN--DAKGIQNRLGLFFFILSFMTFL 403 (613)
T ss_pred cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHH
Confidence 11111127899999999999999999999999999999999999999999999988 8899999999999999999776
Q ss_pred Hhh-hHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 046991 402 TTE-GLPIFLQERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMS 480 (612)
Q Consensus 402 ~~~-~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~ 480 (612)
++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++
T Consensus 404 ~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a 483 (613)
T KOG0061|consen 404 SMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVA 483 (613)
T ss_pred HHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 654 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccC
Q 046991 481 NSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEE 560 (612)
Q Consensus 481 ~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~ 560 (612)
++++.+++++.|+...|+.+++++++++++|+||+++.++||+||+|++|+|+++|++||+++|||.+... .|....+
T Consensus 484 ~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~--~~~~~~~ 561 (613)
T KOG0061|consen 484 ESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSS--RCFLSGN 561 (613)
T ss_pred HHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccc--ccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997222 3765444
Q ss_pred CccccchhHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 046991 561 GECSLYGNGFLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRCYRARK 612 (612)
Q Consensus 561 ~~c~~~g~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~~~ 612 (612)
..|..+|.++++..+++..+.|.|+.++++++++|++++|++|+++.+++++
T Consensus 562 ~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 562 LCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred CcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 5788899999999999999999999999999999999999999999998875
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.4e-106 Score=918.89 Aligned_cols=563 Identities=35% Similarity=0.552 Sum_probs=496.4
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCeeCChhhhcccEEEEecCCCcCCC
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPL 123 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 123 (612)
+++++++|+|+|+++++||++||+|||||||||||++|+|+.+++ ..+|+|.+||++++...+++.+|||+|+|.+++.
T Consensus 34 ~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc
Confidence 345688999999999999999999999999999999999998763 3589999999998766788899999999999999
Q ss_pred CCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 124 LTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
+||+|||.|++.++.+.. ++++++++++++++.+||.+++|+.+|+....++||||||||++||++|+.+|++++||||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 999999999998876643 5667778899999999999999999983223678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHhCCCCCCCCCChh
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKSAGHCIPRHVNVL 282 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~a 282 (612)
|+|||+.++..+++.|+++++ .|+|||+++|||+.+++++||++++|++|+++++|+++++.+||.+.|++||++.||+
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~a 272 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPA 272 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChH
Confidence 999999999999999999986 4899999999998779999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccchhhh---hhc----cch-hhHHHHH--h-hccC------hhhhhhccCCCCcHHHHHHHHHHHHHH
Q 046991 283 EFAIDVIESFVIQTSETL---KTA----NDK-DDLKLRV--A-YSNN------FEEKRKLLSYPNSHVQEVLILGQRFCY 345 (612)
Q Consensus 283 d~~~~~~~~~~~~~~~~~---~~~----~~~-~~~~~~~--~-~~~~------~~~~~~~~~~~~~~~~q~~~l~~R~~~ 345 (612)
||++|+++.......+.. +.. ... ...+... . .... ........++..+++.|+..|++|.++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~ 352 (617)
T TIGR00955 273 DFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWL 352 (617)
T ss_pred HHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHH
Confidence 999999865332211110 000 000 0000000 0 0000 000111235678999999999999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHhhHHHHHHhcCCC
Q 046991 346 NIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFSLTFLLSST-TEGLPIFLQERRILMRETSRGA 424 (612)
Q Consensus 346 ~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~-~~~~~~~~~er~v~~rE~~~~~ 424 (612)
+.+|||.++..|+++++++|+++|++||++++ ++.++++|.|++|++++++.+.+ +..++.|+.||++|+||+.+|+
T Consensus 353 ~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~ 430 (617)
T TIGR00955 353 SVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL--TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430 (617)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999998 88999999999999998888775 4678999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046991 425 YRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSVISGL 504 (612)
Q Consensus 425 Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~ 504 (612)
|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++++++++++|+..+|+.+++++
T Consensus 431 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 510 (617)
T TIGR00955 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPF 510 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCcccccccc-CCccccchhHHHhhcCCCCCCchH
Q 046991 505 MGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFE-EGECSLYGNGFLKQQDLRESQKWS 583 (612)
Q Consensus 505 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~-~~~c~~~g~~~L~~~g~~~~~~w~ 583 (612)
++++++|+||+++.++||+||+|++|+||++||+|+++.|||.+.... +|.+.+ ++.|+.+|+++|+.+|++.++.|.
T Consensus 511 ~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~-~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~ 589 (617)
T TIGR00955 511 VIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNI-ECTSANTTGPCPSSGEVILETLSFRNADLYL 589 (617)
T ss_pred HHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccc-cccCcCcCCCCCcChHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999999999999999986542 376432 345989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 046991 584 NLAVMLSFIIGYRVLCFFILWCRCYRAR 611 (612)
Q Consensus 584 ~~~il~~~~~~~~~~~~~~L~~~~~~~~ 611 (612)
|+++|++++++|++++|++|+++.+++|
T Consensus 590 ~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 590 DLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999877765
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.6e-105 Score=909.29 Aligned_cols=578 Identities=27% Similarity=0.471 Sum_probs=485.5
Q ss_pred CcceEEEeeeEEEEeccc-cc----ccce------ecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046991 15 ALCRLETKNLSYKLCSKF-DE----FNWV------YCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~-~~----~~~~------~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~ 83 (612)
..+.+++.|++|+++... .. ...+ ..+++++++++.+|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 577899999999986442 11 0011 112334556788999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCccc
Q 046991 84 GKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 84 G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~~ 162 (612)
|+.++...+|+|.+||+++.. ..++.+|||+|++.+++.+||+||+.+++.++.+.. ++++.+++++++++.+||+++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 998764469999999998754 345679999999999999999999999887765432 455667789999999999999
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
+|+.+| +...++||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+|||+++|||+.++.+
T Consensus 195 ~~t~vg-~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 195 ENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred cCceeC-CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHH
Confidence 999998 777789999999999999999999999999999999999999999999999986 589999999999866899
Q ss_pred ccCeEEEEcCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHHhhhhhhccc---h-hhh---hh---ccc----hh-
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLEERLKSAGHCIPRHVNVLEFAIDVIESFVIQT---S-ETL---KT---AND----KD- 307 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~---~-~~~---~~---~~~----~~- 307 (612)
+||++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++...... + +.. +. ... ..
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKV 352 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHH
Confidence 999999999999999999999999999999999999999999999986432100 0 000 00 000 00
Q ss_pred hHHHHHh-hccChh-------hhh---hccCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCC
Q 046991 308 DLKLRVA-YSNNFE-------EKR---KLLSYPNSHVQEVLILGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVG 376 (612)
Q Consensus 308 ~~~~~~~-~~~~~~-------~~~---~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~ 376 (612)
....... ...... .+. ....+.++||+|+.+|++|++++ +||+.+...|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000000 000000 000 01124578999999999999988 89999999999999999999999999873
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046991 377 NNTGQVALQTRIGFFAFSLTFLLS-STTEGLPIFLQERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYW 455 (612)
Q Consensus 377 ~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~ 455 (612)
+.++++|.|++||+++++.+ .++..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+||
T Consensus 432 ----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~ 507 (659)
T PLN03211 432 ----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYW 507 (659)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 56899999999999888665 4567899999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhh
Q 046991 456 LIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFK 535 (612)
Q Consensus 456 m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ 535 (612)
|+||++++.+||+|+++++++.++++++|+++|+++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++
T Consensus 508 m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~ 585 (659)
T PLN03211 508 MAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTF 585 (659)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 7999999999999999
Q ss_pred HHHHHHHHHHhCCCCC---ccccccc---cCCccccchhHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046991 536 YPFECFLINEYGGEQG---KTRCLEF---EEGECSLYGNGFLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRC 607 (612)
Q Consensus 536 ya~e~l~~nef~~~~~---~~~C~~~---~~~~c~~~g~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
|||||++.|||++... ...|... ....|...++.++ +..+.|.|+++|++++++|++++|++|++.+
T Consensus 586 y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 586 YSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999987432 1347542 1234665555444 3456899999999999999999999998654
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-102 Score=947.45 Aligned_cols=588 Identities=21% Similarity=0.348 Sum_probs=502.2
Q ss_pred CcceEEEeeeEEEEecccccc-cc-----------eeccc--ccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 046991 15 ALCRLETKNLSYKLCSKFDEF-NW-----------VYCGV--TSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLE 80 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~-~~-----------~~~~~--~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~ 80 (612)
+.+.+.|+||+++........ .. ..... .++...+++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 478899999999884322211 01 00001 12334578999999999999999999999999999999
Q ss_pred HHHcCCCC--CceeeEEEECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC-----CCHHHHHHH-H
Q 046991 81 ILAGKISS--RKVSGKLLVNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA-----GRRKQAASR-V 150 (612)
Q Consensus 81 ~L~G~~~~--~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~-v 150 (612)
+|+|+.++ .+.+|+|.+||++++. ..+++.++||+|+|.+++.+||+||+.|+++++.+. .++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99999742 1379999999998743 345667999999999999999999999998876542 134444444 5
Q ss_pred HHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 046991 151 RGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTII 230 (612)
Q Consensus 151 ~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii 230 (612)
+++++.+||++++|+++| +..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|||
T Consensus 186 ~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVG-NDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHcCcccccCceeC-CCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 779999999999999998 8888999999999999999999999999999999999999999999999999876689999
Q ss_pred EEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHHhhhhhhccch--------hhhhh
Q 046991 231 LTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKSAGHCIPRHVNVLEFAIDVIESFVIQTS--------ETLKT 302 (612)
Q Consensus 231 ~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~--------~~~~~ 302 (612)
+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||++.|||||++++++...+... ...+.
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 9999997789999999999999999999999999999999999999999999999999865422110 00000
Q ss_pred ---ccchhh--HHHHHh---hccC--------------hh----hhhhccCCCCcHHHHHHHHHHHHHHHHhcChHHHHH
Q 046991 303 ---ANDKDD--LKLRVA---YSNN--------------FE----EKRKLLSYPNSHVQEVLILGQRFCYNIFRTNQLFAT 356 (612)
Q Consensus 303 ---~~~~~~--~~~~~~---~~~~--------------~~----~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~ 356 (612)
.....+ ..+..+ +... .. ......++..|+|+|+++|++|++++.+|||.++.+
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~ 424 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF 424 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 000000 000000 0000 00 001123578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHhcCCCCChHHHHHHHHH
Q 046991 357 RVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFSLTFLLSSTTEGLPIFLQERRILMRETSRGAYRASSYVLSNTL 436 (612)
Q Consensus 357 r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l 436 (612)
|+++++++|+++|++||++++ ++.++++|.|++||++++.+++++..++.++.||+||+||+.+++|++++|++|+++
T Consensus 425 r~~~~ii~~li~G~~F~~~~~--~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l 502 (1394)
T TIGR00956 425 MVFGNIIMALILSSVFYNLPK--NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASII 502 (1394)
T ss_pred HHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHH
Confidence 999999999999999999998 889999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc
Q 046991 437 IFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFI 516 (612)
Q Consensus 437 ~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i 516 (612)
+|+|+.++.+++|++|+|||+||++++++||+|++++++..++++++++++|+++|+..+|+.+++++++++++|+||++
T Consensus 503 ~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i 582 (1394)
T TIGR00956 503 SEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAI 582 (1394)
T ss_pred HHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCcccccc---c---------cCCcc----------ccchhHHHh-h
Q 046991 517 SKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLE---F---------EEGEC----------SLYGNGFLK-Q 573 (612)
Q Consensus 517 ~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~---~---------~~~~c----------~~~g~~~L~-~ 573 (612)
|.++||+||+|++|+||++|||||++.|||++...+ |.. . ....| .++|+++|+ .
T Consensus 583 ~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~--C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~ 660 (1394)
T TIGR00956 583 PRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFE--CSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLS 660 (1394)
T ss_pred ChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccc--ccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhc
Confidence 999999999999999999999999999999987654 641 0 01224 569999998 5
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046991 574 QDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRC 607 (612)
Q Consensus 574 ~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
+|++.+++|+|++|+++|+++|++++++++.+.+
T Consensus 661 ~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 661 FQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998876
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-100 Score=927.10 Aligned_cols=585 Identities=25% Similarity=0.414 Sum_probs=497.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++|+||+|.++.+.... +.....+++.+|+|||+++++||++||+||||||||||||+|+|+.+++..+|+|.
T Consensus 866 ~~~~~~~v~y~v~~~~~~~-----~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~ 940 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMK-----EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR 940 (1470)
T ss_pred ceEEEEEEEEEEccCcccc-----ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE
Confidence 4799999999996432100 11112345679999999999999999999999999999999999987556799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+||++.+...+++.+|||+|+|.+++.+||+|||.|++.++.+.. +++++.++++++++.+||.+++|+.+| +..+++
T Consensus 941 inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg-~~~~~~ 1019 (1470)
T PLN03140 941 ISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG-LPGVTG 1019 (1470)
T ss_pred ECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccC-CCCCCC
Confidence 999987655667889999999999999999999999988776543 455667789999999999999999998 666679
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC-Ce
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN-GF 254 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~-G~ 254 (612)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 9999999999999999999999999999999999999999999999864 899999999999668899999999996 89
Q ss_pred EEEecCh----hhHHHHHHhC-CC-CCCCCCChhHHHHHhhhhhhccc-hhhhhhccc-hh---h-HHHHHhhccCh-hh
Q 046991 255 VVHNGTL----NHLEERLKSA-GH-CIPRHVNVLEFAIDVIESFVIQT-SETLKTAND-KD---D-LKLRVAYSNNF-EE 321 (612)
Q Consensus 255 iv~~G~~----~~~~~~f~~~-g~-~~p~~~n~ad~~~~~~~~~~~~~-~~~~~~~~~-~~---~-~~~~~~~~~~~-~~ 321 (612)
++++|++ +++.+||+++ |+ +||++.|||||++|+++...... ......... +. . .........+. ..
T Consensus 1099 ~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1178 (1470)
T PLN03140 1099 VIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA 1178 (1470)
T ss_pred EEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCc
Confidence 9999996 5789999997 66 49999999999999986432111 000000000 00 0 00001111111 11
Q ss_pred hh--hccCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCCCCC-ChhhHHHHHHHHHHHHHHH
Q 046991 322 KR--KLLSYPNSHVQEVLILGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNT-GQVALQTRIGFFAFSLTFL 398 (612)
Q Consensus 322 ~~--~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~-~~~~~~~~~g~~f~~~~~~ 398 (612)
++ ...+++.++|.|++.|++|+++++||||.++.+|+++++++|+++|++||+++++. +..+++++.|++|+++++.
T Consensus 1179 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~ 1258 (1470)
T PLN03140 1179 SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFV 1258 (1470)
T ss_pred cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 11 12467899999999999999999999999999999999999999999999998732 2467888999999998888
Q ss_pred HHHHh-hhHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHH
Q 046991 399 LSSTT-EGLPIFLQERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVL 477 (612)
Q Consensus 399 ~~~~~-~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~ 477 (612)
.+..+ ..+|.|..||++|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||+.++.+||+|++++++..
T Consensus 1259 ~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~ 1338 (1470)
T PLN03140 1259 GINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 77554 56799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCcccccc
Q 046991 478 LMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLE 557 (612)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~ 557 (612)
++++++|+++++++|+..+|..++++++.++++|+||++|.++||+||+|++|+||++|+++|++.|||++...+ |..
T Consensus 1339 ~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~--~~~ 1416 (1470)
T PLN03140 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDT--IKV 1416 (1470)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCc--ccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987655 432
Q ss_pred ccCCccccchhHHH-hhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 046991 558 FEEGECSLYGNGFL-KQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRCYRAR 611 (612)
Q Consensus 558 ~~~~~c~~~g~~~L-~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~~ 611 (612)
++. ....++++++ +.||+++++.|++++++++|+++|++++++++++.++++|
T Consensus 1417 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1417 PGG-APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CCC-CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 211 1113577775 6799999999999999999999999999999999998876
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.9e-100 Score=924.51 Aligned_cols=591 Identities=22% Similarity=0.348 Sum_probs=496.6
Q ss_pred CCCCcceEEEeeeEEEEeccccc--ccce-----------ec--cc-ccccCccceeeceEEEEeCCeEEEEECCCCCcH
Q 046991 12 SRKALCRLETKNLSYKLCSKFDE--FNWV-----------YC--GV-TSKKDPKFILKDVSCEARPGEITAIAGPSGAGK 75 (612)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~--~~~~-----------~~--~~-~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGK 75 (612)
...+.+.+.|+||++........ ...+ .. +. ..++.++.||+|+|+.++|||+++|+|||||||
T Consensus 125 ~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGK 204 (1470)
T PLN03140 125 IKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGK 204 (1470)
T ss_pred CCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCH
Confidence 34578889999999887622111 1000 00 10 012246789999999999999999999999999
Q ss_pred HHHHHHHHcCCCCC-ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC--------CHHHH
Q 046991 76 TTLLEILAGKISSR-KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG--------RRKQA 146 (612)
Q Consensus 76 TTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~--------~~~~~ 146 (612)
|||||+|+|++++. ..+|+|.+||++++....++.++||+|+|.+++.+||+|||.|+++++.+.. +++++
T Consensus 205 STLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek 284 (1470)
T PLN03140 205 TTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREK 284 (1470)
T ss_pred HHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHH
Confidence 99999999999763 3489999999988544446789999999999999999999999987653210 11111
Q ss_pred ------------------------HHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 147 ------------------------ASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 147 ------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
+..++++++.+||++++||.+| +...++|||||||||+||++|+.+|++++||||
T Consensus 285 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg-~~~~rglSGGerkRVsia~aL~~~p~vlllDEP 363 (1470)
T PLN03140 285 DAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG-DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEI 363 (1470)
T ss_pred hccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC-CccccCCCcccceeeeehhhhcCCCcEEEEeCC
Confidence 1236789999999999999998 888899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHhCCCCCCCCCChh
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKSAGHCIPRHVNVL 282 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~a 282 (612)
|+|||+.++.++++.|++++++.|+|+|+++|||+.+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||
T Consensus 364 TsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~A 443 (1470)
T PLN03140 364 STGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTA 443 (1470)
T ss_pred CcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChH
Confidence 99999999999999999998767899999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccch-----h-----hhhhc---cchhh--HHHHHhhccC----hhh--hhhccCCCCcHHHHHHHHHH
Q 046991 283 EFAIDVIESFVIQTS-----E-----TLKTA---NDKDD--LKLRVAYSNN----FEE--KRKLLSYPNSHVQEVLILGQ 341 (612)
Q Consensus 283 d~~~~~~~~~~~~~~-----~-----~~~~~---~~~~~--~~~~~~~~~~----~~~--~~~~~~~~~~~~~q~~~l~~ 341 (612)
||++++++..+.+.. . ..+.. ....+ ..+..+...+ ... .....+|..+++.|++.|++
T Consensus 444 DFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~ 523 (1470)
T PLN03140 444 DFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWD 523 (1470)
T ss_pred HHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHH
Confidence 999999875332110 0 00000 00000 0111110000 000 01224588999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHh
Q 046991 342 RFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNT-GQVALQTRIGFFAFSLTFLLSSTTEGLPIFLQERRILMRET 420 (612)
Q Consensus 342 R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~-~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~er~v~~rE~ 420 (612)
|.++..+||+..+..|+++.+++|+++|++||+++.+. +..+.+.+.|++||++++.++++++.++.++.||+||+||+
T Consensus 524 R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker 603 (1470)
T PLN03140 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQR 603 (1470)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhh
Confidence 99999999999999999999999999999999997531 23445677899999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 046991 421 SRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSV 500 (612)
Q Consensus 421 ~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~ 500 (612)
++++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|++++++..++++++++++++++|+..+|+.+
T Consensus 604 ~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 683 (1470)
T PLN03140 604 DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTG 683 (1470)
T ss_pred hccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCc-cccccccCCccccchhHHHhhcCCCCC
Q 046991 501 ISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGK-TRCLEFEEGECSLYGNGFLKQQDLRES 579 (612)
Q Consensus 501 ~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~-~~C~~~~~~~c~~~g~~~L~~~g~~~~ 579 (612)
++++++++++|+||+++.++||+||+|++|+||++||+||++.|||.+.... ..|. +.+..+|+++|+.+|+..+
T Consensus 684 ~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~----~~~~~~G~~~L~~~g~~~~ 759 (1470)
T PLN03140 684 GALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMAS----DNSTRLGTAVLNIFDVFTD 759 (1470)
T ss_pred HHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccC----CCCcccHHHHHHhcCcCcc
Confidence 9999999999999999999999999999999999999999999999876432 1122 2245799999999999876
Q ss_pred C--chHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046991 580 Q--KWSNLAVMLSFIIGYRVLCFFILWCRC 607 (612)
Q Consensus 580 ~--~w~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
+ .|+++++|++|+++|+++++++|++.+
T Consensus 760 ~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 760 KNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 588999999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.7e-99 Score=918.98 Aligned_cols=573 Identities=27% Similarity=0.447 Sum_probs=490.1
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGK 94 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~ 94 (612)
...++|+||+|+++. +.+++.+|+|||+++++||++||+||||||||||||+|+|+.+++ +.+|+
T Consensus 757 ~~~l~~~nl~~~~~~--------------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~ 822 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKI--------------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822 (1394)
T ss_pred CceEEEEeeEEEecC--------------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE
Confidence 356899999998831 124578999999999999999999999999999999999998743 46799
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
|.+||++++ ..+++.+|||+|+|.+++.+||+|||.|++.++.+.. +++++.++++++++.+||.+++|+.+| .. .
T Consensus 823 I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~-~~-~ 899 (1394)
T TIGR00956 823 RLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG-VP-G 899 (1394)
T ss_pred EEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-CC-C
Confidence 999999985 3577889999999999999999999999988876543 556677889999999999999999997 22 2
Q ss_pred CccChHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 174 CGISGGERRRASIGVDLVHDPA-VVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.+||||||||++||++|+.+|+ +|||||||+|||+.++..+++.|+++++ .|+|||+++|||+..+++.||++++|++
T Consensus 900 ~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~ 978 (1394)
T TIGR00956 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQK 978 (1394)
T ss_pred CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcC
Confidence 3899999999999999999997 9999999999999999999999999986 5899999999999667789999999998
Q ss_pred C-eEEEecCh----hhHHHHHHhCCC-CCCCCCChhHHHHHhhhhhhccch-hhhhhccc-hh---h--HHHHH---hhc
Q 046991 253 G-FVVHNGTL----NHLEERLKSAGH-CIPRHVNVLEFAIDVIESFVIQTS-ETLKTAND-KD---D--LKLRV---AYS 316 (612)
Q Consensus 253 G-~iv~~G~~----~~~~~~f~~~g~-~~p~~~n~ad~~~~~~~~~~~~~~-~~~~~~~~-~~---~--~~~~~---~~~ 316 (612)
| +++++|++ +++.+||++.|+ +||++.|||||++|+++....... +......+ +. . ..+.. ...
T Consensus 979 GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1058 (1394)
T TIGR00956 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELS 1058 (1394)
T ss_pred CCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccc
Confidence 7 99999997 468999999996 999999999999999864322110 00000000 00 0 00000 000
Q ss_pred cChhh--hhhccCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHH
Q 046991 317 NNFEE--KRKLLSYPNSHVQEVLILGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFS 394 (612)
Q Consensus 317 ~~~~~--~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~ 394 (612)
..... .....++++++|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++.++|+|+|++|+.
T Consensus 1059 ~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~--~~~~i~~~~g~~f~~ 1136 (1394)
T TIGR00956 1059 KAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT--SLQGLQNQMFAVFMA 1136 (1394)
T ss_pred cCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHH
Confidence 00000 11124688999999999999999999999999999999999999999999999999 899999999999998
Q ss_pred HHHHHHHHhhhHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhH-------H
Q 046991 395 LTFLLSSTTEGLPIFLQERRIL-MRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDG-------F 466 (612)
Q Consensus 395 ~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~-------f 466 (612)
+.+..+.....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||+.++.. |
T Consensus 1137 ~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f 1216 (1394)
T TIGR00956 1137 TVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERG 1216 (1394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchH
Confidence 8877776667889999999886 8999999999999999999999999999999999999999999988766 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHh
Q 046991 467 LFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEY 546 (612)
Q Consensus 467 ~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef 546 (612)
++|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++.++||.||+|++|+||++|+++|++.|||
T Consensus 1217 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~ 1296 (1394)
T TIGR00956 1217 VLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGL 1296 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc--------------cccccc----------------cCCcc---c-cchhHHHhhcCCCCCCchHHHHHHHHHH
Q 046991 547 GGEQGK--------------TRCLEF----------------EEGEC---S-LYGNGFLKQQDLRESQKWSNLAVMLSFI 592 (612)
Q Consensus 547 ~~~~~~--------------~~C~~~----------------~~~~c---~-~~g~~~L~~~g~~~~~~w~~~~il~~~~ 592 (612)
++...+ .+|.++ ....| + .+|+++|+.+|++.+++|+|++++++|+
T Consensus 1297 ~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~ 1376 (1394)
T TIGR00956 1297 ADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFI 1376 (1394)
T ss_pred CCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHH
Confidence 985421 356411 11224 4 4999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcc
Q 046991 593 IGYRVLCFFILWCRCYR 609 (612)
Q Consensus 593 ~~~~~~~~~~L~~~~~~ 609 (612)
+++ ++++++|+++.+.
T Consensus 1377 ~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1377 FFN-IIATVFFYWLARV 1392 (1394)
T ss_pred HHH-HHHHHhhheEEEc
Confidence 999 8888889887543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-97 Score=845.94 Aligned_cols=557 Identities=28% Similarity=0.438 Sum_probs=469.1
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCC
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 124 (612)
+.+.+++|+|||+.++||.++||||+||||||||||+||||...+.++|+|++||.|.+.+.++|.+|||.|+|.|.+.+
T Consensus 800 qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 800 QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 33678899999999999999999999999999999999999987789999999999998788999999999999999999
Q ss_pred CHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCC-CEEEEeCC
Q 046991 125 TVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDP-AVVLIDEP 202 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p-~lllLDEP 202 (612)
||||.|.|+|.||++.. +.+++.+.|+++++.++|++++|..|| .+. .|||..||||++||.+|+.+| .|||||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG-~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG-LPG-SGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-CCC-CCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 99999999999999876 777778999999999999999999998 555 899999999999999999999 89999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC-CeEEEecChhh----HHHHHHhCC-CCCC
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN-GFVVHNGTLNH----LEERLKSAG-HCIP 276 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~~~~----~~~~f~~~g-~~~p 276 (612)
|||||+.++..|++.+|++++ .|+||+||+|||+.++++.||++++|++ |++||.|+..+ +.+||++.| .+||
T Consensus 958 TSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~ 1036 (1391)
T KOG0065|consen 958 TSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCI 1036 (1391)
T ss_pred CCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCC
Confidence 999999999999999999996 6999999999999999999999999975 89999999865 678999976 8999
Q ss_pred CCCChhHHHHHhhhhhhccch-hhhhhccchhh------HHHHH---hhccChhhhhhccCCCCcHHHHHHHHHHHHHHH
Q 046991 277 RHVNVLEFAIDVIESFVIQTS-ETLKTANDKDD------LKLRV---AYSNNFEEKRKLLSYPNSHVQEVLILGQRFCYN 346 (612)
Q Consensus 277 ~~~n~ad~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 346 (612)
...|||||++|++........ ....+.....+ ..+.. .............+++.|+|.|++.+++|++..
T Consensus 1037 ~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~s 1116 (1391)
T KOG0065|consen 1037 SDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLS 1116 (1391)
T ss_pred CCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHH
Confidence 999999999999865332211 00111111000 11110 111101112233568999999999999999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhHHHHHHhcCCCC
Q 046991 347 IFRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFSLTFLLSSTTEGLP-IFLQERRILMRETSRGAY 425 (612)
Q Consensus 347 ~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~-~~~~er~v~~rE~~~~~Y 425 (612)
+||+|.++++|++.+++.|+++|+.||+.++ +..+.|+.+|++|..+.+......+..+ .+..||.+++||+++|+|
T Consensus 1117 yWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~--~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mY 1194 (1391)
T KOG0065|consen 1117 YWRSPDYLMARFALTIVAGLFIGFTFWKVGH--NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMY 1194 (1391)
T ss_pred HhCCcHHHHHHHHHHHHHHHhheeeeeecCC--cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcc
Confidence 9999999999999999999999999999998 8999999999999998877766655444 555699999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046991 426 RASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSVISGLM 505 (612)
Q Consensus 426 ~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~ 505 (612)
++.+|++|.+++|+|+.++++++|.+|+|+|+||+.++++|++|++..++..++.+.+|+++.+++||..+|..+.+.+.
T Consensus 1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~ 1274 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFF 1274 (1391)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCcccccccc----CCccccchhHHHh-hcC----C
Q 046991 506 GSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFE----EGECSLYGNGFLK-QQD----L 576 (612)
Q Consensus 506 ~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~----~~~c~~~g~~~L~-~~g----~ 576 (612)
..+.+|+|+++|.+.||.||+|++|+||+.|..++++..++++.... |...+ +++|..+..++++ .+| +
T Consensus 1275 s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~--c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy 1352 (1391)
T KOG0065|consen 1275 SFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVT--CEDSEMNYFDPPSGQTCGEFMEDFFGEGTGY 1352 (1391)
T ss_pred HHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCcee--eecCCccccCCCCCcCHHHHHHHHhccCcce
Confidence 99999999999999999999999999999999999999999986533 54321 1122223333443 244 3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 046991 577 RESQKWSNLAVMLSFIIGYRVLCFFILWCRCY 608 (612)
Q Consensus 577 ~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~ 608 (612)
.++..-..-.+..++.+++.+++-+.+++..+
T Consensus 1353 ~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1353 LHNPLATTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred eccCcceeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 33222222233344555555555555554443
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.2e-92 Score=804.48 Aligned_cols=557 Identities=26% Similarity=0.426 Sum_probs=490.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 125 (612)
....+|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||.+.+...-++.++|++|+|.++|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999998653 357899999998865333788999999999999999
Q ss_pred HHHHHHHHHHccCCCC-----CHHHHHH-HHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEE
Q 046991 126 VEETLMCSALLRLTAG-----RRKQAAS-RVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLI 199 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~-----~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllL 199 (612)
|+|+|.|+++++.+.. ++.++.+ ..+.+++.+||++|+||+|| +...||+||||||||++|.+++.+|+++++
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeecCcceeee
Confidence 9999999999987732 3333322 57899999999999999999 999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHhCCCCCCCCC
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKSAGHCIPRHV 279 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~ 279 (612)
||+|+|||+.++.++++.|+++++..+.|+++++|||+.+++++||+|++|++|+++|+||.+++.+||++.||.||++.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~ 364 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRK 364 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCcc
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhhhhhccch---hh------h-hh---cc-chh-hHHHHHh----hccChhh--hhhccCCCCcHHHHHHH
Q 046991 280 NVLEFAIDVIESFVIQTS---ET------L-KT---AN-DKD-DLKLRVA----YSNNFEE--KRKLLSYPNSHVQEVLI 338 (612)
Q Consensus 280 n~ad~~~~~~~~~~~~~~---~~------~-~~---~~-~~~-~~~~~~~----~~~~~~~--~~~~~~~~~~~~~q~~~ 338 (612)
++|||+.++++..+.... +. . ++ .. ..+ ..++... +.++... ....++|..+.|.|++.
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~ 444 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKA 444 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHH
Confidence 999999999873221110 00 0 00 00 000 0111111 1111111 12346789999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHH
Q 046991 339 LGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVG-NNTGQVALQTRIGFFAFSLTFLLSSTTEGLPIFLQERRILM 417 (612)
Q Consensus 339 l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~-~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~er~v~~ 417 (612)
|++|.++.++||..++..++++.+++|+++|++|++.+ . +..+.+.|.|++||++++.++.+++.++..++.||||+
T Consensus 445 c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~--t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~ 522 (1391)
T KOG0065|consen 445 CTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMS--TTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFY 522 (1391)
T ss_pred HHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCc--ccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHH
Confidence 99999999999999999999999999999999999998 5 77889999999999999999999999999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 046991 418 RETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMG 497 (612)
Q Consensus 418 rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a 497 (612)
|||...+|++|+|.++.+++++|+.++.+++|.+|+||++||.+++++||.|++++++...++.++++++++++++...|
T Consensus 523 Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~A 602 (1391)
T KOG0065|consen 523 KHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIA 602 (1391)
T ss_pred HhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCcccccccc---------CCcc-----
Q 046991 498 TSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFE---------EGEC----- 563 (612)
Q Consensus 498 ~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~---------~~~c----- 563 (612)
+.++++.++.+.+++||+||.++||+||+|++|+||+.||+|+++.|||++.+.+ |.+.+ ...|
T Consensus 603 n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~--c~p~gp~y~n~~~~~~~c~~~~~ 680 (1391)
T KOG0065|consen 603 NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWP--CSPSGPAYDNISIENKVCAATGA 680 (1391)
T ss_pred hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCC--CCCCCCcccccccccccchhhcc
Confidence 9999999999999999999999999999999999999999999999999998766 76211 1223
Q ss_pred -----ccchhHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 046991 564 -----SLYGNGFLK-QQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRCY 608 (612)
Q Consensus 564 -----~~~g~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~ 608 (612)
.+.|.++++ .|++++.+.|+|+||++||.++|.++..+++.|.+.
T Consensus 681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p 731 (1391)
T KOG0065|consen 681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKP 731 (1391)
T ss_pred ccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCc
Confidence 346667774 377889999999999999999999999999987763
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-55 Score=418.74 Aligned_cols=232 Identities=33% Similarity=0.509 Sum_probs=207.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +...+|+|||+++++||+++|+||||||||||||||+|+.++ ++|+|.+
T Consensus 2 mi~i~~l~K~f------------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i 61 (240)
T COG1126 2 MIEIKNLSKSF------------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITV 61 (240)
T ss_pred eEEEEeeeEEe------------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEE
Confidence 68899999888 778899999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMD----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++. ....|+.+|+|+|+.+|||.+||.||+.++.. +..+.++++.++++.++|+++||.+.+|.++.
T Consensus 62 ~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~-~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~----- 135 (240)
T COG1126 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-KVKKLSKAEAREKALELLEKVGLADKADAYPA----- 135 (240)
T ss_pred CCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH-HHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----
Confidence 998763 25688999999999999999999999998753 23344788899999999999999999998886
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+|||||||||+|||||+.+|+++++|||||+|||+...++++.++++|+ .|.|.|++||++.. +.+.+|||+.|++|
T Consensus 136 -qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~F-Ar~VadrviFmd~G 212 (240)
T COG1126 136 -QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGF-AREVADRVIFMDQG 212 (240)
T ss_pred -ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHH-HHHhhheEEEeeCC
Confidence 9999999999999999999999999999999999999999999999996 48999999999997 89999999999999
Q ss_pred eEEEecChhhHHHHHHhCCCCCCCCCChhHHHH
Q 046991 254 FVVHNGTLNHLEERLKSAGHCIPRHVNVLEFAI 286 (612)
Q Consensus 254 ~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 286 (612)
+++..|+++++. ..|.+....+|+-
T Consensus 213 ~iie~g~p~~~f--------~~p~~~R~~~FL~ 237 (240)
T COG1126 213 KIIEEGPPEEFF--------DNPKSERTRQFLS 237 (240)
T ss_pred EEEEecCHHHHh--------cCCCCHHHHHHHH
Confidence 999999887642 3354444555543
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-52 Score=415.68 Aligned_cols=223 Identities=31% Similarity=0.442 Sum_probs=204.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+.. +..+...+|+|||++|++||++||+|.||||||||+|++.++..| ++|+|.+
T Consensus 1 mI~l~~vsK~~~~-------------~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v 65 (339)
T COG1135 1 MIELENVSKTFGQ-------------TGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFV 65 (339)
T ss_pred CeEEEeeeeeecc-------------CCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEE
Confidence 5799999988831 122346799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
||+++.. ++.|+.||+++|+.+|+...||+||+.|+.++. +.++++.++||.++++.+||++.++.++.
T Consensus 66 ~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia--g~~k~ei~~RV~elLelVgL~dk~~~yP~--- 140 (339)
T COG1135 66 DGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA--GVPKAEIKQRVAELLELVGLSDKADRYPA--- 140 (339)
T ss_pred cCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc--CCCHHHHHHHHHHHHHHcCChhhhccCch---
Confidence 9987642 567899999999999999999999999987664 34788999999999999999999888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||||||+|||||+.+|++|++|||||+|||.+...|+++|+++.++.|.||+++||+++. +.++|||+.+|+
T Consensus 141 ---qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~ 216 (339)
T COG1135 141 ---QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLD 216 (339)
T ss_pred ---hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEee
Confidence 9999999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred CCeEEEecChhhH
Q 046991 252 NGFVVHNGTLNHL 264 (612)
Q Consensus 252 ~G~iv~~G~~~~~ 264 (612)
+|++++.|+..++
T Consensus 217 ~G~lvE~G~v~~v 229 (339)
T COG1135 217 QGRLVEEGTVSEV 229 (339)
T ss_pred CCEEEEeccHHHh
Confidence 9999999998765
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7e-52 Score=413.83 Aligned_cols=220 Identities=35% Similarity=0.535 Sum_probs=200.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.+
T Consensus 2 ~L~~~~ls~~y------------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l 61 (258)
T COG1120 2 MLEVENLSFGY------------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLL 61 (258)
T ss_pred eeEEEEEEEEE------------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEE
Confidence 58999999998 578899999999999999999999999999999999999987 6999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++. .+++.+.+|||||+....+.+||+|.+.++..-... ....+++++.++++|+.+|+.+.+++.+.
T Consensus 62 ~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~---- 137 (258)
T COG1120 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD---- 137 (258)
T ss_pred CCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc----
Confidence 999874 467889999999999888999999999887321111 11244556689999999999999999997
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|||||||||.|||||+++|++|+||||||.||...+.+++++++++++++|+|||+++||++. +.++||++++|++
T Consensus 138 --~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~ 214 (258)
T COG1120 138 --ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD 214 (258)
T ss_pred --ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999998889999999999995 8999999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|+++..|+++++
T Consensus 215 G~i~a~G~p~ev 226 (258)
T COG1120 215 GKIVAQGTPEEV 226 (258)
T ss_pred CeEEeecCcchh
Confidence 999999999875
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=400.18 Aligned_cols=219 Identities=31% Similarity=0.493 Sum_probs=202.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+++++|+|+.| +++.+++|+|++|++||+++++|||||||||+||+|.++++| ++|+|++
T Consensus 1 MI~~~nvsk~y------------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i 60 (309)
T COG1125 1 MIEFENVSKRY------------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILI 60 (309)
T ss_pred Cceeeeeehhc------------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEE
Confidence 57899999887 578899999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH--VASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~ 172 (612)
||+++.. .++|+.||||-|+..|||.+||.||+.....+. +.++++.+++++++|+.+||++ ++++++.
T Consensus 61 ~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~--~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---- 134 (309)
T COG1125 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL--GWDKERIKKRADELLDLVGLDPSEYADRYPH---- 134 (309)
T ss_pred CCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc--CCCHHHHHHHHHHHHHHhCCCHHHHhhcCch----
Confidence 9999753 578999999999999999999999999876653 3467888999999999999974 6777765
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|||||+|||.+||||+.+|++|++|||+++|||.++.++.+.++++.++.|+|||++|||.+ |+++++|||.+|++
T Consensus 135 --eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~ 211 (309)
T COG1125 135 --ELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA 211 (309)
T ss_pred --hcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred CeEEEecChhhHH
Q 046991 253 GFVVHNGTLNHLE 265 (612)
Q Consensus 253 G~iv~~G~~~~~~ 265 (612)
|+++..++|+++.
T Consensus 212 G~i~Q~~~P~~il 224 (309)
T COG1125 212 GEIVQYDTPDEIL 224 (309)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999999875
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6e-51 Score=422.25 Aligned_cols=224 Identities=40% Similarity=0.627 Sum_probs=204.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccC-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKD-PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.++++||++.+ + ++.+|+||||++++||++|++||||||||||+|+|+|+.+| ++|+|.
T Consensus 4 ~i~~~~l~k~~------------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~ 63 (293)
T COG1131 4 VIEVRNLTKKY------------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEIL 63 (293)
T ss_pred eeeecceEEEe------------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEE
Confidence 56788888887 5 58899999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 97 VNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 97 ~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
++|++... .+.++++||++|++.+++.+||+|||.|.+.++... .+..+++++++++.+||.+..+++++
T Consensus 64 i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~------ 135 (293)
T COG1131 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS--KEEAEERIEELLELFGLEDKANKKVR------ 135 (293)
T ss_pred EcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHcCCchhhCcchh------
Confidence 99998754 567889999999999999999999999999887432 24567789999999999987677786
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+||+|||||++||+||+++|+++||||||+||||.++..+.++|++++++.|+||++|||+++ ++.++||+|++|++|+
T Consensus 136 ~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~ 214 (293)
T COG1131 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGK 214 (293)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999999876689999999998 6999999999999999
Q ss_pred EEEecChhhHHHHHHh
Q 046991 255 VVHNGTLNHLEERLKS 270 (612)
Q Consensus 255 iv~~G~~~~~~~~f~~ 270 (612)
++++|+++++...+..
T Consensus 215 ~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 215 IIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEeCCHHHHHHhhcc
Confidence 9999999987766543
No 15
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-51 Score=395.11 Aligned_cols=228 Identities=33% Similarity=0.486 Sum_probs=204.2
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||++.|+ +++++|+|||++|++||++||+||||||||||||+|+|+.++ ++|+|.
T Consensus 2 ~~i~~~nl~k~yp-----------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~ 62 (258)
T COG3638 2 MMIEVKNLSKTYP-----------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEIL 62 (258)
T ss_pred ceEEEeeeeeecC-----------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEE
Confidence 4789999999884 668899999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCccccc
Q 046991 97 VNDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT------AGRRKQAASRVRGLLKELGLDHVAS 164 (612)
Q Consensus 97 ~~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~------~~~~~~~~~~v~~~l~~lgL~~~~~ 164 (612)
+||.++.. +++|+++||++|++.+.+.+||.||+..+..-+.+ +...++.+.++-++|+++|+.+.+.
T Consensus 63 ~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred ecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 99987642 46788999999999999999999999876421111 1123556678889999999999999
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
++.+ +|||||+|||+|||+|+++|++++.|||+++|||.++.++|+.|++++++.|.|||++.||.+. +.++|
T Consensus 143 qra~------~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~ 215 (258)
T COG3638 143 QRAS------TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYA 215 (258)
T ss_pred HHhc------cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHH
Confidence 9987 8999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred CeEEEEcCCeEEEecChhhHHHHHHh
Q 046991 245 DRLVLLSNGFVVHNGTLNHLEERLKS 270 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~~~f~~ 270 (612)
||++-|++|+++|+|+++++.+..-+
T Consensus 216 ~Riigl~~G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 216 DRIIGLKAGRIVFDGPASELTDEALD 241 (258)
T ss_pred hhheEecCCcEEEeCChhhhhHHHHH
Confidence 99999999999999999988665544
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-50 Score=392.56 Aligned_cols=223 Identities=30% Similarity=0.433 Sum_probs=203.5
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+...+++++|++++ +++.|++|||+++++||+++||||||||||||||+|.|+++| .+|+
T Consensus 5 ~~~~I~vr~v~~~f------------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~Ge 64 (263)
T COG1127 5 PEPLIEVRGVTKSF------------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGE 64 (263)
T ss_pred CcceEEEeeeeeec------------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCe
Confidence 36789999999887 788999999999999999999999999999999999999987 7999
Q ss_pred EEECCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-ccccc
Q 046991 95 LLVNDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-ASSRI 167 (612)
Q Consensus 95 I~~~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v 167 (612)
|+++|+++.. .+.++++|+++|+-.||..+||+||+.|..+-. ...+++..++.+..-|+.+||... ++..+
T Consensus 65 I~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~-~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P 143 (263)
T COG1127 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH-TKLPESLIRELVLMKLELVGLRGAAADLYP 143 (263)
T ss_pred EEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-ccCCHHHHHHHHHHHHHhcCCChhhhhhCc
Confidence 9999998742 356789999999999999999999999875422 223677888889999999999877 67766
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. +|||||+||+++|||++.||+++|+||||+||||.++..+-++++++.++.|.|++++|||.. +++..|||+
T Consensus 144 s------ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv 216 (263)
T COG1127 144 S------ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRV 216 (263)
T ss_pred h------hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceE
Confidence 5 899999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|.+|+++.+|+++++.
T Consensus 217 ~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 217 AVLADGKVIAEGTPEELL 234 (263)
T ss_pred EEEeCCEEEEeCCHHHHH
Confidence 999999999999999864
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.6e-50 Score=391.46 Aligned_cols=212 Identities=35% Similarity=0.537 Sum_probs=185.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+++++||++.|.. ......+|+++|++|++||+++|+|||||||||||++|+|+.+| ++|+|.+
T Consensus 1 ~i~~~~v~k~y~~--------------~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i 64 (226)
T COG1136 1 MIELKNVSKIYGL--------------GGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLI 64 (226)
T ss_pred CcEEeeeEEEecc--------------CCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEE
Confidence 3678999988832 11236799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh------hhh-cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc-ccccC
Q 046991 98 NDRPMDA------EHF-RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS-SRIGG 169 (612)
Q Consensus 98 ~g~~~~~------~~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~vg~ 169 (612)
+|++++. ..+ ++.+|||+|+..|.|++||+||+.+++.+.. .+..+.+++++++++.+||.+..+ +++.
T Consensus 65 ~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~--~~~~~~~~~~~~l~~~lgl~~~~~~~~p~- 141 (226)
T COG1136 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG--KSAGRRKRAAEELLEVLGLEDRLLKKKPS- 141 (226)
T ss_pred CCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC--CChhHHHHHHHHHHHhcCChhhhccCCch-
Confidence 9988752 223 4679999999999999999999998765542 223356778999999999997666 6665
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+|||||||||+|||||+.+|++++.||||.+||+.++..|++++++++++.|+|||++|||+. +...|||++.
T Consensus 142 -----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~ 214 (226)
T COG1136 142 -----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIE 214 (226)
T ss_pred -----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEE
Confidence 899999999999999999999999999999999999999999999999888999999999985 7889999999
Q ss_pred EcCCeE
Q 046991 250 LSNGFV 255 (612)
Q Consensus 250 L~~G~i 255 (612)
|++|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999984
No 18
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-50 Score=397.33 Aligned_cols=219 Identities=30% Similarity=0.554 Sum_probs=191.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|+++.| +++++|+|||+++++||+++|+||||||||||+|+|.|+++| .+|+|.
T Consensus 3 ~~i~v~nl~v~y------------------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~ 62 (254)
T COG1121 3 PMIEVENLTVSY------------------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIK 62 (254)
T ss_pred cEEEEeeeEEEE------------------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEE
Confidence 568999999999 322699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCChhhhcccEEEEecCC---CcCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 97 VNDRPMDAEHFRRISGYVTQDD---ALFPLLTVEETLMCSALLRL--TAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
++|++.....-+.+||||||.. .-|| +||+|.+..+..-+. -....++++++++++|+++|+.+.+|+.+|
T Consensus 63 ~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~--- 138 (254)
T COG1121 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG--- 138 (254)
T ss_pred EccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc---
Confidence 9999876544457899999964 3355 699999988632221 111234457889999999999999999998
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++ |+||++++||++ .+.++||+|++|+
T Consensus 139 ---~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~-~v~~~~D~vi~Ln 213 (254)
T COG1121 139 ---ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLG-LVMAYFDRVICLN 213 (254)
T ss_pred ---ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcH-HhHhhCCEEEEEc
Confidence 89999999999999999999999999999999999999999999999876 999999999999 4999999999995
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+++++.|+++++.
T Consensus 214 -~~~~~~G~~~~~~ 226 (254)
T COG1121 214 -RHLIASGPPEEVL 226 (254)
T ss_pred -CeeEeccChhhcc
Confidence 6788999998863
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-50 Score=391.93 Aligned_cols=208 Identities=34% Similarity=0.499 Sum_probs=190.0
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++++++.+ +...+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.
T Consensus 2 ~~l~i~~v~~~f------------------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~ 61 (248)
T COG1116 2 ALLEIEGVSKSF------------------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVL 61 (248)
T ss_pred ceEEEEeeEEEe------------------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEE
Confidence 357889999888 447899999999999999999999999999999999999987 799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
++|+++. .-...++||+|++.++|.+||+||+.++..... .++++.+++++++|+.+||.+..|..+. +|
T Consensus 62 ~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~--~~~~e~~~~a~~~L~~VgL~~~~~~~P~------qL 131 (248)
T COG1116 62 LDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG--KSKAEARERAKELLELVGLAGFEDKYPH------QL 131 (248)
T ss_pred ECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccc--cchHhHHHHHHHHHHHcCCcchhhcCcc------cc
Confidence 9999873 345679999999999999999999999876642 3466777899999999999999988876 99
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC--Ce
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN--GF 254 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~--G~ 254 (612)
||||||||+|||||+.+|++|+||||+++||+.++.++.+.|.++.++.++||+++|||.+ |+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998 68899999999998 44
Q ss_pred E
Q 046991 255 V 255 (612)
Q Consensus 255 i 255 (612)
+
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-50 Score=415.85 Aligned_cols=235 Identities=31% Similarity=0.459 Sum_probs=211.3
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...++++||+++| ++..+++|+|++|++||+++|+||||||||||||+|||+..| ++|+|
T Consensus 3 ~~~l~i~~v~k~y------------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I 62 (352)
T COG3842 3 KPALEIRNVSKSF------------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEI 62 (352)
T ss_pred CceEEEEeeeeec------------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceE
Confidence 4578999999888 678899999999999999999999999999999999999987 79999
Q ss_pred EECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 96 LVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 96 ~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
.++|++++. ...+|.+|+|+|+-.|||.|||+||+.|+.+++. ...+++.+++|+++++.++|++.+++++.
T Consensus 63 ~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~-~~~~~~i~~rv~e~L~lV~L~~~~~R~p~------ 135 (352)
T COG3842 63 LLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK-KLKKAEIKARVEEALELVGLEGFADRKPH------ 135 (352)
T ss_pred EECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC-CCCHHHHHHHHHHHHHHcCchhhhhhChh------
Confidence 999999864 4457889999999999999999999999987432 12456788999999999999999999886
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.++.|.|.|++|||.+ |...++|||.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998 6999999999999999
Q ss_pred EEEecChhhHHHHHHhCCCCCCCCCChhHHHH
Q 046991 255 VVHNGTLNHLEERLKSAGHCIPRHVNVLEFAI 286 (612)
Q Consensus 255 iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 286 (612)
+...|+++++.. .|...-.|||+-
T Consensus 215 I~Q~gtP~eiY~--------~P~~~fVA~FiG 238 (352)
T COG3842 215 IEQVGTPEEIYE--------RPATRFVADFIG 238 (352)
T ss_pred eeecCCHHHHhh--------CcchHHHHHHhC
Confidence 999999998642 344444555554
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=410.65 Aligned_cols=221 Identities=33% Similarity=0.496 Sum_probs=204.2
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|||+.+| ++|+|.
T Consensus 2 ~~i~l~~v~K~y------------------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~ 61 (338)
T COG3839 2 AELELKNVRKSF------------------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEIL 61 (338)
T ss_pred cEEEEeeeEEEc------------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEE
Confidence 468999999888 333399999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 97 VNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 97 ~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
++|++++. .-.+|.+|+|+|+..+||.|||+||+.|+.+.+ +.++++.+++|+++.+.|+|++..|+++. +
T Consensus 62 i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~--~~~k~ei~~rV~eva~~L~l~~lL~r~P~------~ 133 (338)
T COG3839 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR--GVPKAEIDKRVKEVAKLLGLEHLLNRKPL------Q 133 (338)
T ss_pred ECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC--CCchHHHHHHHHHHHHHcCChhHHhcCcc------c
Confidence 99999875 445688999999999999999999999997654 34678889999999999999999999986 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
|||||||||+|||||+.+|++++||||+|+||+..+..+...|+++.++.|.|+|.+|||.. |+..++||+.+|++|++
T Consensus 134 LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i 212 (338)
T COG3839 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRI 212 (338)
T ss_pred CChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999999999999888999999999997 79999999999999999
Q ss_pred EEecChhhHHH
Q 046991 256 VHNGTLNHLEE 266 (612)
Q Consensus 256 v~~G~~~~~~~ 266 (612)
...|++.++.+
T Consensus 213 ~Q~g~p~ely~ 223 (338)
T COG3839 213 QQVGTPLELYE 223 (338)
T ss_pred eecCChHHHhh
Confidence 99999998753
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-49 Score=375.23 Aligned_cols=221 Identities=34% Similarity=0.511 Sum_probs=201.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|++++++++|+ ...++++||||+++.||+++|+|||||||||+||+|++++.| ++|+|++
T Consensus 1 Ml~v~~l~K~y~-----------------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~i 61 (245)
T COG4555 1 MLEVTDLTKSYG-----------------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTI 61 (245)
T ss_pred Ceeeeehhhhcc-----------------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEE
Confidence 467788887772 223499999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC--hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMD--AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
||.+.. +...|++||.++.+..++..||++|||.|.+++. ...+.+.+++++++.+.++|.++.|+++| +
T Consensus 62 dg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~--~l~~~~~kari~~l~k~l~l~~~~~rRv~------~ 133 (245)
T COG4555 62 DGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN--GLSRKEIKARIAELSKRLQLLEYLDRRVG------E 133 (245)
T ss_pred eecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHhChHHHHHHHHh------h
Confidence 998863 4678899999998889999999999999998774 23567888999999999999999999998 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
+|.|+||||+|||||+++|++++|||||||||..+...+.+.++++. +.|++||++||.++ |+..+||++++|++|++
T Consensus 134 ~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~-EvealCDrvivlh~Gev 211 (245)
T COG4555 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEV 211 (245)
T ss_pred hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHH-HHHHhhheEEEEecCcE
Confidence 99999999999999999999999999999999999999999999995 45999999999998 69999999999999999
Q ss_pred EEecChhhHHHH
Q 046991 256 VHNGTLNHLEER 267 (612)
Q Consensus 256 v~~G~~~~~~~~ 267 (612)
++.|+.+++.+.
T Consensus 212 v~~gs~~~l~~r 223 (245)
T COG4555 212 VLEGSIEALDAR 223 (245)
T ss_pred EEcCCHHHHHHH
Confidence 999999887654
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-49 Score=393.15 Aligned_cols=211 Identities=31% Similarity=0.491 Sum_probs=193.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCe---eCCh-hhhcccEEEEecCCCcCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR---PMDA-EHFRRISGYVTQDDALFP 122 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~---~~~~-~~~~~~i~yv~Q~~~l~~ 122 (612)
+...+++|||++|+.||++|++||||||||||||+|+|++.| ++|.|.+||+ +.+. ....++||||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 667799999999999999999999999999999999999987 7999999999 4443 334578999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
.|||.||+.|+.+.+....++.+.+.+|+++|+.+.|++..++++. +|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~------QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA------QLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch------hcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 9999999999987763223567788999999999999999988875 9999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHH
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
+++||..-+.++-+.|+++.++.|.|++++|||++ |++++||||++|++|+|...|+++++.+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999998888999999999998 6999999999999999999999998743
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.9e-47 Score=399.28 Aligned_cols=221 Identities=32% Similarity=0.484 Sum_probs=198.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++||+++| +++.+|+||||++++||++||+||||||||||+++|+|+.+| ++|+|.
T Consensus 6 ~~i~i~~l~k~~------------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~ 65 (306)
T PRK13537 6 APIDFRNVEKRY------------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSIS 65 (306)
T ss_pred ceEEEEeEEEEE------------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEE
Confidence 479999999988 446799999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 97 VNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 97 ~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
++|+++.. ...++.+||++|++.+++.+||+||+.+.+.++ +.+.++..++++++++.++|.+..++.++
T Consensus 66 i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 137 (306)
T PRK13537 66 LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF--GLSAAAARALVPPLLEFAKLENKADAKVG------ 137 (306)
T ss_pred ECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchHhcCchh------
Confidence 99998743 346788999999999999999999999876543 22345556778999999999998999887
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+||||||||++||+||+++|++|+|||||+|||+.++..+.++|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999965 5899999999998 6999999999999999
Q ss_pred EEEecChhhHHHH
Q 046991 255 VVHNGTLNHLEER 267 (612)
Q Consensus 255 iv~~G~~~~~~~~ 267 (612)
+++.|+++++.+.
T Consensus 216 i~~~g~~~~l~~~ 228 (306)
T PRK13537 216 KIAEGAPHALIES 228 (306)
T ss_pred EEEECCHHHHHhc
Confidence 9999999887543
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.5e-47 Score=402.44 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=197.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++|.. +.+.+.+|+||||++++||+++|+||||||||||+|+|+|+.+| ++|+|.+
T Consensus 1 mI~~~~lsk~y~~--------------~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i 64 (343)
T TIGR02314 1 MIKLSNITKVFHQ--------------GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIV 64 (343)
T ss_pred CEEEEEEEEEECC--------------CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE
Confidence 4899999998831 11235799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh---h---hhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA---E---HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. . ..++.+||++|+..+++.+||+||+.+..... +.++++.++++.++++.+||.+..|+.++
T Consensus 65 ~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~v~e~l~~vgL~~~~~~~~~--- 139 (343)
T TIGR02314 65 DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEIKRKVTELLALVGLGDKHDSYPS--- 139 (343)
T ss_pred CCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChh---
Confidence 9998742 1 24678999999999999999999999876432 22456667889999999999998888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||||||+|||||+.+|++|+|||||++||+.++..++++|++++++.|.|||++||+++ .+.++||++++|+
T Consensus 140 ---~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~ 215 (343)
T TIGR02314 140 ---NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS 215 (343)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999998766899999999998 4889999999999
Q ss_pred CCeEEEecChhhH
Q 046991 252 NGFVVHNGTLNHL 264 (612)
Q Consensus 252 ~G~iv~~G~~~~~ 264 (612)
+|++++.|+++++
T Consensus 216 ~G~iv~~g~~~~v 228 (343)
T TIGR02314 216 NGELIEQGTVSEI 228 (343)
T ss_pred CCEEEEEcCHHHH
Confidence 9999999998876
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-47 Score=383.88 Aligned_cols=218 Identities=31% Similarity=0.478 Sum_probs=191.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~ 60 (235)
T cd03261 1 IELRGLTKSF------------------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLID 60 (235)
T ss_pred CeEEEEEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4688999887 345699999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 99 DRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 99 g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
|+++.. ..+++.++|++|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++.++
T Consensus 61 g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (235)
T cd03261 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT-RLSEEEIREIVLEKLEAVGLRGAEDLYPA---- 135 (235)
T ss_pred CEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHcCCchhhcCChh----
Confidence 988642 2456789999999999999999999988653221 12344556778999999999988888876
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++
T Consensus 136 --~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~ 212 (235)
T cd03261 136 --ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD 212 (235)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 899999999999999999999999999999999999999999999997655899999999998 58899999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 213 G~i~~~g~~~~~ 224 (235)
T cd03261 213 GKIVAEGTPEEL 224 (235)
T ss_pred CeEEEecCHHHH
Confidence 999999988764
No 27
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.4e-48 Score=360.73 Aligned_cols=214 Identities=31% Similarity=0.479 Sum_probs=193.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+|+|+++.|+ +++++|+||||++++||++-|.||||||||||||+|.+..+| ++|+|++
T Consensus 1 mI~f~~V~k~Y~-----------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~ 61 (223)
T COG2884 1 MIRFENVSKAYP-----------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILV 61 (223)
T ss_pred CeeehhhhhhcC-----------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEE
Confidence 578999998883 347799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
||++++. .-+|++||+|+||..+.+..||+||+.|+.+.. +.++++.+++|.++|+.+||.+.++..+.
T Consensus 62 ~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~--G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--- 136 (223)
T COG2884 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI--GKPPREIRRRVSEVLDLVGLKHKARALPS--- 136 (223)
T ss_pred CCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc--CCCHHHHHHHHHHHHHHhccchhhhcCcc---
Confidence 9999753 347899999999999999999999999986553 34677889999999999999998888775
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+ .|+||++.|||.+. +.++-.|++.|+
T Consensus 137 ---~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~ 211 (223)
T COG2884 137 ---QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALE 211 (223)
T ss_pred ---ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEe
Confidence 8999999999999999999999999999999999999999999999964 69999999999874 777888999999
Q ss_pred CCeEEEecC
Q 046991 252 NGFVVHNGT 260 (612)
Q Consensus 252 ~G~iv~~G~ 260 (612)
+|+++.+..
T Consensus 212 ~Grl~~d~~ 220 (223)
T COG2884 212 DGRLVRDES 220 (223)
T ss_pred CCEEEeccc
Confidence 999987643
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4e-47 Score=403.24 Aligned_cols=220 Identities=32% Similarity=0.478 Sum_probs=199.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.
T Consensus 3 ~~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~ 62 (353)
T TIGR03265 3 PYLSIDNIRKRF------------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIY 62 (353)
T ss_pred cEEEEEEEEEEe------------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEE
Confidence 468999999988 346699999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 97 VNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 97 ~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
++|+++.. ...++.+|||+|+..+||.+||+||+.|+...+ ..++++.+++++++++.+||++..++.+. +
T Consensus 63 i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~l~L~~~~~~~~~------~ 134 (353)
T TIGR03265 63 QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR--GMGRAEVAERVAELLDLVGLPGSERKYPG------Q 134 (353)
T ss_pred ECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhCChh------h
Confidence 99998753 234678999999999999999999999986532 22456677889999999999999988876 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
|||||||||+|||||+.+|++++|||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998777999999999998 69999999999999999
Q ss_pred EEecChhhHH
Q 046991 256 VHNGTLNHLE 265 (612)
Q Consensus 256 v~~G~~~~~~ 265 (612)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998864
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-47 Score=373.74 Aligned_cols=223 Identities=31% Similarity=0.461 Sum_probs=194.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||++.|+.+ .....+|+||||++.+||+++|+|+||||||||.++|+|+.+| .+|+|.
T Consensus 2 ~~l~v~nl~~~y~~~--------------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~ 65 (252)
T COG1124 2 TLLSVRNLSIVYGGG--------------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSIL 65 (252)
T ss_pred ceEEEeceEEEecCC--------------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEE
Confidence 478999999998421 1223699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCChh----hhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccC
Q 046991 97 VNDRPMDAE----HFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGG 169 (612)
Q Consensus 97 ~~g~~~~~~----~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~ 169 (612)
++|++..+. .+++.+.+||||+ .+.|..||++.|.-+... .+ -++.++++.++++.+||.+ .+++++.
T Consensus 66 ~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~--~~--~~~~~~~i~~~L~~VgL~~~~l~R~P~- 140 (252)
T COG1124 66 LDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP--HG--LSKSQQRIAELLDQVGLPPSFLDRRPH- 140 (252)
T ss_pred ECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc--CC--ccHHHHHHHHHHHHcCCCHHHHhcCch-
Confidence 999887542 4678899999998 589999999999876543 11 1233345999999999975 4566664
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++.|.|.|++|||.+. +..+|||+++
T Consensus 141 -----eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~V 214 (252)
T COG1124 141 -----ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAV 214 (252)
T ss_pred -----hcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheee
Confidence 8999999999999999999999999999999999999999999999999999999999999985 9999999999
Q ss_pred EcCCeEEEecChhhHHH
Q 046991 250 LSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~~ 266 (612)
|++|++++.++.+++.+
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999988653
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-47 Score=403.74 Aligned_cols=220 Identities=26% Similarity=0.420 Sum_probs=198.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.+
T Consensus 3 ~l~i~~l~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~ 63 (356)
T PRK11650 3 GLKLQAVRKSYD-----------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWI 63 (356)
T ss_pred EEEEEeEEEEeC-----------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEE
Confidence 589999998872 345699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
||+++.. ...++.+|||+|++.++|.+||+||+.|+.+.+ +.++++..++++++++.+||.+..++++. +|
T Consensus 64 ~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~L 135 (356)
T PRK11650 64 GGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR--GMPKAEIEERVAEAARILELEPLLDRKPR------EL 135 (356)
T ss_pred CCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhHhhCChh------hC
Confidence 9998753 223578999999999999999999999986532 22455666789999999999999998886 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++.|+|+|++|||++ ++.+++|++++|++|+++
T Consensus 136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAE 214 (356)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999998767899999999998 699999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 215 ~~g~~~~~~ 223 (356)
T PRK11650 215 QIGTPVEVY 223 (356)
T ss_pred EECCHHHHH
Confidence 999998863
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-47 Score=400.53 Aligned_cols=220 Identities=22% Similarity=0.387 Sum_probs=199.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.
T Consensus 5 ~~l~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~ 64 (351)
T PRK11432 5 NFVVLKNITKRF------------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIF 64 (351)
T ss_pred cEEEEEeEEEEE------------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEE
Confidence 379999999988 346699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 97 VNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 97 ~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+||+++.. ...++.+|||+|+..+||.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..++++. +
T Consensus 65 ~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~~gl~~~~~r~~~------~ 136 (351)
T PRK11432 65 IDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML--GVPKEERKQRVKEALELVDLAGFEDRYVD------Q 136 (351)
T ss_pred ECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc--CCCHHHHHHHHHHHHHHcCCchhhcCChh------h
Confidence 99998753 233578999999999999999999999986543 22456677889999999999998888876 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++.|+|+|++|||++ ++.+++|++++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998777899999999998 69999999999999999
Q ss_pred EEecChhhHH
Q 046991 256 VHNGTLNHLE 265 (612)
Q Consensus 256 v~~G~~~~~~ 265 (612)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998763
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-46 Score=396.48 Aligned_cols=222 Identities=30% Similarity=0.438 Sum_probs=198.8
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++||+++| +++.+|+||||++++||++||+||||||||||+++|+|+++| .+|+|
T Consensus 39 ~~~i~i~nl~k~y------------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i 98 (340)
T PRK13536 39 TVAIDLAGVSKSY------------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKI 98 (340)
T ss_pred ceeEEEEEEEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEE
Confidence 4579999999988 456799999999999999999999999999999999999977 79999
Q ss_pred EECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 96 LVNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
.++|+++.. ...++.+||++|++.+++.+||+||+.+.+.+. ..+..+..++++++++.+||.+..+++++
T Consensus 99 ~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 99 TVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred EECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 999998743 346778999999999999999999999765443 12344556678899999999998999887
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+||||||||++||+||+++|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|
T Consensus 172 -~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~-e~~~~~d~i~il~~G 248 (340)
T PRK13536 172 -DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLEAG 248 (340)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 8999999999999999999999999999999999999999999999975 5899999999998 689999999999999
Q ss_pred eEEEecChhhHHHH
Q 046991 254 FVVHNGTLNHLEER 267 (612)
Q Consensus 254 ~iv~~G~~~~~~~~ 267 (612)
++++.|+++++.+.
T Consensus 249 ~i~~~g~~~~l~~~ 262 (340)
T PRK13536 249 RKIAEGRPHALIDE 262 (340)
T ss_pred EEEEEcCHHHHHhh
Confidence 99999999987543
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-47 Score=378.09 Aligned_cols=222 Identities=32% Similarity=0.475 Sum_probs=198.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|++|+|+ +++.+|+|+|+++++||.++|+|+||||||||+++|+|+++| .+|+|.
T Consensus 2 ~~i~~~~l~~~y~-----------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~ 62 (235)
T COG1122 2 RMIEAENLSFRYP-----------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVL 62 (235)
T ss_pred ceEEEEEEEEEcC-----------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEE
Confidence 3688999999983 226899999999999999999999999999999999999987 789999
Q ss_pred ECCeeCC----hhhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 97 VNDRPMD----AEHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~----~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
++|.+.. ...+++.+|||+|++. .+-.-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++.+.
T Consensus 63 ~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~--g~~~~e~~~rv~~~l~~vgl~~~~~r~p~--- 137 (235)
T COG1122 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL--GLPREEIEERVAEALELVGLEELLDRPPF--- 137 (235)
T ss_pred ECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc--CCCHHHHHHHHHHHHHHcCchhhccCCcc---
Confidence 9999865 4678899999999972 344459999999986432 23566788999999999999999888875
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.|||||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++.|+|+|++|||.+ .+..++|++++|+
T Consensus 138 ---~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~ 213 (235)
T COG1122 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD 213 (235)
T ss_pred ---ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999998877899999999998 5999999999999
Q ss_pred CCeEEEecChhhHHH
Q 046991 252 NGFVVHNGTLNHLEE 266 (612)
Q Consensus 252 ~G~iv~~G~~~~~~~ 266 (612)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877654
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-46 Score=399.56 Aligned_cols=219 Identities=28% Similarity=0.424 Sum_probs=197.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcee--eEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVS--GKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~--G~I 95 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+ |+|
T Consensus 5 ~l~~~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i 64 (362)
T TIGR03258 5 GIRIDHLRVAY------------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRI 64 (362)
T ss_pred EEEEEEEEEEE------------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEE
Confidence 48899999988 345699999999999999999999999999999999999977 67 999
Q ss_pred EECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 96 LVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 96 ~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
.++|+++.. ...++.+|||+|+..++|.+||+||+.|+...+ +.++++.+++++++++.+||++..++++.
T Consensus 65 ~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~------ 136 (362)
T TIGR03258 65 AIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ--KMPKADIAERVADALKLVGLGDAAAHLPA------ 136 (362)
T ss_pred EECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCchhhCChh------
Confidence 999998743 234578999999999999999999999986543 22455667789999999999999998886
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ-GKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~-g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.++. |+|+|++|||++ ++..++|++++|++|
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G 215 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDG 215 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998764 799999999998 689999999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
No 35
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=362.06 Aligned_cols=236 Identities=28% Similarity=0.410 Sum_probs=201.8
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~ 91 (612)
....++++||++.| +.+.+|+|||+.|++++++|+|||||||||||||++....+.- ..
T Consensus 4 ~~~~~~~~~l~~yY------------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~ 65 (253)
T COG1117 4 KIPAIEVRDLNLYY------------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65 (253)
T ss_pred ccceeEecceeEEE------------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceE
Confidence 34568999999988 6788999999999999999999999999999999999886532 57
Q ss_pred eeEEEECCeeCC-----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccc
Q 046991 92 SGKLLVNDRPMD-----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASS 165 (612)
Q Consensus 92 ~G~I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 165 (612)
+|+|.++|+++. ..++|+++|+|+|.|+-|| +|++||+.|+.++.- ..+++.++.|++.|+..+|-+ ..|+
T Consensus 66 ~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g--~~~~~ldeiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG--IKDKELDEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred EEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc--cchHHHHHHHHHHHHHhHhHHHhHHH
Confidence 899999999873 2568999999999999999 899999999987642 223677889999999999853 3343
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
. +....+|||||+||++|||+|+.+|+|||||||||+|||.+...|-+++.++++ .-|||++||.+. .+.+..|
T Consensus 143 L---~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmq-QAaRvSD 216 (253)
T COG1117 143 L---HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQ-QAARVSD 216 (253)
T ss_pred h---hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHH-HHHHHhH
Confidence 3 223348999999999999999999999999999999999999999999999964 579999999998 5899999
Q ss_pred eEEEEcCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLEERLKSAGHCIPRHVNVLEFA 285 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 285 (612)
+..++..|+++++|+++++. ..|.+....||+
T Consensus 217 ~taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 217 YTAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred hhhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 99999999999999998752 345555555554
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=398.10 Aligned_cols=221 Identities=27% Similarity=0.429 Sum_probs=197.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|++
T Consensus 2 ~L~i~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i 61 (353)
T PRK10851 2 SIEIANIKKSF------------------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRF 61 (353)
T ss_pred EEEEEEEEEEe------------------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 48899999888 345799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRL--TAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
+|+++.. ...++.++||+|++.++|.+||+||+.|...... ...+.++..++++++++.+||++..++++.
T Consensus 62 ~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~------ 135 (353)
T PRK10851 62 HGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA------ 135 (353)
T ss_pred CCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh------
Confidence 9998753 2345679999999999999999999998764321 112455667789999999999988888886
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.+++|++++|++|+
T Consensus 136 ~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGN 214 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999998766899999999998 5999999999999999
Q ss_pred EEEecChhhHH
Q 046991 255 VVHNGTLNHLE 265 (612)
Q Consensus 255 iv~~G~~~~~~ 265 (612)
+++.|+++++.
T Consensus 215 i~~~g~~~~i~ 225 (353)
T PRK10851 215 IEQAGTPDQVW 225 (353)
T ss_pred EEEEcCHHHHH
Confidence 99999998864
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-48 Score=364.25 Aligned_cols=210 Identities=30% Similarity=0.549 Sum_probs=191.1
Q ss_pred cCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCCCcC
Q 046991 46 KDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDDALF 121 (612)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~ 121 (612)
+++++++++||+++++||+++++|||||||||.+.++.|+.+| ++|+|.+||.+++. +..|..+||+||++..|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 3778899999999999999999999999999999999999987 79999999999864 44567899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 122 PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
..|||+||++.....+.....+.+.+++++++|+++++.|+++++-. .||||||||+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~------sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY------SLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc------ccccchHHHHHHHHHHhcCCCEEEecC
Confidence 99999999998876654322334566778999999999999998765 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++|.||.+..+|.++++.++. .|..|++|-|+.+ |...+|||.+++++|++..+|+++++.
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 9999999999999999999974 6999999999999 699999999999999999999999874
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-46 Score=398.38 Aligned_cols=221 Identities=27% Similarity=0.420 Sum_probs=199.4
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|
T Consensus 17 ~~~l~l~~v~~~~------------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I 76 (377)
T PRK11607 17 TPLLEIRNLTKSF------------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQI 76 (377)
T ss_pred CceEEEEeEEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEE
Confidence 4469999999988 345699999999999999999999999999999999999977 79999
Q ss_pred EECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 96 LVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 96 ~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
.++|+++.. ...++.+|||+|++.+||.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++.+.
T Consensus 77 ~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~l~L~~~~~~~~~------ 148 (377)
T PRK11607 77 MLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD--KLPKAEIASRVNEMLGLVHMQEFAKRKPH------ 148 (377)
T ss_pred EECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCChh------
Confidence 999998743 335678999999999999999999999986532 22456667889999999999998888876
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+|||||||||+|||||+.+|++|+|||||++||+..+..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|+
T Consensus 149 ~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~ 227 (377)
T PRK11607 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGK 227 (377)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999998777899999999998 6899999999999999
Q ss_pred EEEecChhhHH
Q 046991 255 VVHNGTLNHLE 265 (612)
Q Consensus 255 iv~~G~~~~~~ 265 (612)
++..|+++++.
T Consensus 228 i~~~g~~~~~~ 238 (377)
T PRK11607 228 FVQIGEPEEIY 238 (377)
T ss_pred EEEEcCHHHHH
Confidence 99999998764
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.7e-46 Score=399.12 Aligned_cols=222 Identities=27% Similarity=0.418 Sum_probs=199.2
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+
T Consensus 11 ~~~~L~l~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~ 70 (375)
T PRK09452 11 LSPLVELRGISKSF------------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGR 70 (375)
T ss_pred CCceEEEEEEEEEE------------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceE
Confidence 34469999999988 346699999999999999999999999999999999999977 7999
Q ss_pred EEECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 95 LLVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 95 I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
|.++|+++.. ...++.+|||+|++.+||.+||+||+.|+.+.+ +.++.+.+++++++++.+||++..++++.
T Consensus 71 I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~p~----- 143 (375)
T PRK09452 71 IMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ--KTPAAEITPRVMEALRMVQLEEFAQRKPH----- 143 (375)
T ss_pred EEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhCChh-----
Confidence 9999998753 234578999999999999999999999986432 22455566789999999999999998886
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+|||||||||+|||||+.+|++|+|||||+|||+..+..+.+.|++++++.|+|+|++|||+. ++..++|++++|++|
T Consensus 144 -~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G 221 (375)
T PRK09452 144 -QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDG 221 (375)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998777899999999998 699999999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
+++..|+++++.
T Consensus 222 ~i~~~g~~~~i~ 233 (375)
T PRK09452 222 RIEQDGTPREIY 233 (375)
T ss_pred EEEEEcCHHHHH
Confidence 999999998763
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-46 Score=372.38 Aligned_cols=216 Identities=34% Similarity=0.448 Sum_probs=190.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~~~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~ 60 (220)
T cd03265 1 IEVENLVKKY------------------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVA 60 (220)
T ss_pred CEEEEEEEEE------------------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4788998887 346799999999999999999999999999999999999876 79999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|.++.. ...++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..+++++ .|
T Consensus 61 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~L 132 (220)
T cd03265 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY--GVPGAERRERIDELLDFVGLLEAADRLVK------TY 132 (220)
T ss_pred CEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCChh------hC
Confidence 987642 345678999999999999999999998875432 12344456678999999999988888886 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 133 S~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 133 SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRII 211 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999998655889999999998 588999999999999999
Q ss_pred EecChhh
Q 046991 257 HNGTLNH 263 (612)
Q Consensus 257 ~~G~~~~ 263 (612)
..|++++
T Consensus 212 ~~~~~~~ 218 (220)
T cd03265 212 AEGTPEE 218 (220)
T ss_pred EeCChHH
Confidence 9988765
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-46 Score=370.86 Aligned_cols=212 Identities=36% Similarity=0.534 Sum_probs=185.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~ 60 (213)
T cd03259 1 LELKGLSKTY------------------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILID 60 (213)
T ss_pred CeeeeeEEEe------------------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEC
Confidence 4688898887 346799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+|+.+..++.+. .||
T Consensus 61 g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS 132 (213)
T cd03259 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR--GVPKAEIRARVRELLELVGLEGLLNRYPH------ELS 132 (213)
T ss_pred CEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhcChh------hCC
Confidence 998743 234567999999999999999999998765332 11234455678999999999988888876 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++
T Consensus 133 gG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999997656899999999998 5889999999999999987
Q ss_pred ec
Q 046991 258 NG 259 (612)
Q Consensus 258 ~G 259 (612)
.|
T Consensus 212 ~g 213 (213)
T cd03259 212 VG 213 (213)
T ss_pred cC
Confidence 65
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.9e-46 Score=387.95 Aligned_cols=221 Identities=31% Similarity=0.457 Sum_probs=195.6
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++||++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|
T Consensus 2 ~~~i~~~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i 61 (303)
T TIGR01288 2 NVAIDLVGVSKSY------------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKI 61 (303)
T ss_pred CcEEEEEeEEEEe------------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 3578999999988 346699999999999999999999999999999999999976 79999
Q ss_pred EECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 96 LVNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
.++|+++.. ...++.+||++|++.+++.+||+||+.+..... ..+.++..++++++++.++|.+..++.++
T Consensus 62 ~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 62 TVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred EECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 999998642 345678999999999999999999998755432 12344455678899999999988888887
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|
T Consensus 135 -~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 135 -LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESG 211 (303)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 8999999999999999999999999999999999999999999999975 5899999999998 588999999999999
Q ss_pred eEEEecChhhHHH
Q 046991 254 FVVHNGTLNHLEE 266 (612)
Q Consensus 254 ~iv~~G~~~~~~~ 266 (612)
++++.|+++++.+
T Consensus 212 ~i~~~g~~~~~~~ 224 (303)
T TIGR01288 212 RKIAEGRPHALID 224 (303)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999988753
No 43
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-47 Score=368.36 Aligned_cols=222 Identities=33% Similarity=0.505 Sum_probs=200.7
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++||++++ ++-.+++|||+++++||+++|+||||||||||+|+|+|.++| ++|+|.
T Consensus 3 ~lL~v~~l~k~F------------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~ 62 (250)
T COG0411 3 PLLEVRGLSKRF------------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVI 62 (250)
T ss_pred ceeeeccceeec------------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEE
Confidence 457788888776 788999999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc--------CCCC--CHHHHHHHHHHHHHHcCCccc
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLR--------LTAG--RRKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~--------~~~~--~~~~~~~~v~~~l~~lgL~~~ 162 (612)
++|++++. +..+..++--+|...+|++|||.||+..++..+ .+.. ..++..+++.++|+.+||.+.
T Consensus 63 ~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~ 142 (250)
T COG0411 63 FRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL 142 (250)
T ss_pred ECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh
Confidence 99999863 335667899999999999999999999875532 1111 345677889999999999999
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
+|+..+ .||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.++.|.||+++.||++. +.+
T Consensus 143 a~~~A~------~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~ 215 (250)
T COG0411 143 ADRPAG------NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMG 215 (250)
T ss_pred hcchhh------cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-Hhh
Confidence 999998 8999999999999999999999999999999999999999999999987778999999999996 999
Q ss_pred ccCeEEEEcCCeEEEecChhhHH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+||||++|+.|+++.+|+|+++.
T Consensus 216 l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 216 LADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred hccEEEeccCCcCcccCCHHHHh
Confidence 99999999999999999999875
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-46 Score=374.60 Aligned_cols=220 Identities=30% Similarity=0.449 Sum_probs=191.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 61 (239)
T cd03296 2 SIEVRNVSKRF------------------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILF 61 (239)
T ss_pred EEEEEeEEEEE------------------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 58899999988 345699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
+|+++.. ...++.++|++|++.+++.+||+||+.+....... ....++..++++++++.+||.+..++.++
T Consensus 62 ~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 135 (239)
T cd03296 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA------ 135 (239)
T ss_pred CCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh------
Confidence 9998743 22356799999999999999999999886543211 01233445678899999999888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+
T Consensus 136 ~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGR 214 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCe
Confidence 899999999999999999999999999999999999999999999998655899999999997 4889999999999999
Q ss_pred EEEecChhhH
Q 046991 255 VVHNGTLNHL 264 (612)
Q Consensus 255 iv~~G~~~~~ 264 (612)
++..|+++++
T Consensus 215 i~~~~~~~~~ 224 (239)
T cd03296 215 IEQVGTPDEV 224 (239)
T ss_pred EEEecCHHHH
Confidence 9999988765
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-46 Score=393.64 Aligned_cols=223 Identities=30% Similarity=0.427 Sum_probs=195.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++|.. +..++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 1 mi~i~~l~~~y~~--------------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~ 64 (343)
T PRK11153 1 MIELKNISKVFPQ--------------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLV 64 (343)
T ss_pred CEEEEeEEEEeCC--------------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEE
Confidence 4789999998821 01246799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ...++.++||+|++.+++.+||+||+.+..... +.+.++..++++++++.+||.+..++.+.
T Consensus 65 ~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (343)
T PRK11153 65 DGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA--GTPKAEIKARVTELLELVGLSDKADRYPA--- 139 (343)
T ss_pred CCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChh---
Confidence 9998742 124678999999999999999999999875432 22344556788999999999988888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|+
T Consensus 140 ---~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~ 215 (343)
T PRK11153 140 ---QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID 215 (343)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999998766899999999998 5889999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|+++++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (343)
T PRK11153 216 AGRLVEQGTVSEVF 229 (343)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987763
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-46 Score=396.42 Aligned_cols=219 Identities=31% Similarity=0.500 Sum_probs=196.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.+
T Consensus 3 ~l~i~~l~~~~------------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~ 62 (369)
T PRK11000 3 SVTLRNVTKAY------------------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFI 62 (369)
T ss_pred EEEEEEEEEEe------------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEE
Confidence 58999999988 345699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.++||+|++.+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..++.+. +|
T Consensus 63 ~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~lgL~~~~~~~~~------~L 134 (369)
T PRK11000 63 GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEEINQRVNQVAEVLQLAHLLDRKPK------AL 134 (369)
T ss_pred CCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhhhcCChh------hC
Confidence 9998743 223567999999999999999999999876532 12345566789999999999988888886 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.++||++++|++|+++
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998766899999999998 589999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 214 ~~g~~~~i~ 222 (369)
T PRK11000 214 QVGKPLELY 222 (369)
T ss_pred EEcCHHHHH
Confidence 999998763
No 47
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-46 Score=349.08 Aligned_cols=201 Identities=30% Similarity=0.475 Sum_probs=182.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMC 132 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 132 (612)
..++.+++||++||+||||||||||||+|+|+..| .+|+|++||++.+. .-..|-+++++|+.++|..+||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 57889999999999999999999999999999987 79999999999754 3355779999999999999999999987
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046991 133 SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASAL 212 (612)
Q Consensus 133 ~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 212 (612)
+..-.++ -..+.+++++.++..+||..+.++.++ +|||||||||++||+|+.+-+|++||||+|.|||.-+.
T Consensus 95 Gl~P~Lk--L~a~~r~~v~~aa~~vGl~~~~~RLP~------~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGLK--LNAEQREKVEAAAAQVGLAGFLKRLPG------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcccc--cCHHHHHHHHHHHHHhChhhHhhhCcc------ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 6432111 245677889999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 213 HVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 213 ~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
++..++.+++.+.+.|++++||+|+ ++.+++|+++++++|||.+.|+.++..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999998 699999999999999999999987753
No 48
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-46 Score=373.83 Aligned_cols=220 Identities=36% Similarity=0.532 Sum_probs=189.3
Q ss_pred EEEeeeEEEEecccccccceecccccccCc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDP-KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
|+++||++++ ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 l~~~~l~~~~------------------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 60 (241)
T cd03256 1 IEVENLSKTY------------------PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLI 60 (241)
T ss_pred CEEeeEEEec------------------CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEE
Confidence 4678888877 22 5799999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHHHcCCcccccc
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLR------LTAGRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~------~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
+|+++.. ...++.++|++|++.+++.+||+||+.+..... ......++..+++.++++.+||.+..++
T Consensus 61 ~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (241)
T cd03256 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ 140 (241)
T ss_pred CCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC
Confidence 9998642 235678999999999999999999998753210 0011123345678899999999887787
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||
T Consensus 141 ~~~------~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d 213 (241)
T cd03256 141 RAD------QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYAD 213 (241)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 775 899999999999999999999999999999999999999999999998666899999999998 5888999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
++++|++|++++.|+++++.
T Consensus 214 ~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 214 RIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEEEEECCEEEeecCHHHhh
Confidence 99999999999999988753
No 49
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.9e-46 Score=366.85 Aligned_cols=212 Identities=29% Similarity=0.484 Sum_probs=186.6
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~ 60 (213)
T cd03301 1 VELENVTKRF------------------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIG 60 (213)
T ss_pred CEEEeeEEEE------------------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4688999887 345799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+|+.+..++.++ .||
T Consensus 61 g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS 132 (213)
T cd03301 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR--KVPKDEIDERVREVAELLQIEHLLDRKPK------QLS 132 (213)
T ss_pred CEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHHhCChh------hCC
Confidence 998743 223467999999999999999999998865432 12344556678999999999988888876 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++
T Consensus 133 ~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999998656899999999997 5889999999999999988
Q ss_pred ec
Q 046991 258 NG 259 (612)
Q Consensus 258 ~G 259 (612)
.|
T Consensus 212 ~g 213 (213)
T cd03301 212 IG 213 (213)
T ss_pred cC
Confidence 75
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=368.25 Aligned_cols=216 Identities=35% Similarity=0.494 Sum_probs=187.6
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~~~--------------~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 64 (220)
T cd03293 1 LEVRNVSKTYGG--------------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVD 64 (220)
T ss_pred CeEEEEEEEcCC--------------CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 468899988720 01125799999999999999999999999999999999999876 79999999
Q ss_pred CeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh
Q 046991 99 DRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG 178 (612)
Q Consensus 99 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg 178 (612)
|+++. ..++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.++ +|||
T Consensus 65 g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSg 134 (220)
T cd03293 65 GEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ--GVPKAEARERAEELLELVGLSGFENAYPH------QLSG 134 (220)
T ss_pred CEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCcc------cCCH
Confidence 99875 24677999999999999999999998875432 12234455778999999999988888776 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc--CCeEE
Q 046991 179 GERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS--NGFVV 256 (612)
Q Consensus 179 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~--~G~iv 256 (612)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|+ +|+++
T Consensus 135 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEE
Confidence 99999999999999999999999999999999999999999987666899999999997 4889999999999 79999
Q ss_pred EecCh
Q 046991 257 HNGTL 261 (612)
Q Consensus 257 ~~G~~ 261 (612)
..++.
T Consensus 214 ~~~~~ 218 (220)
T cd03293 214 AEVEV 218 (220)
T ss_pred EEEEe
Confidence 88765
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=371.71 Aligned_cols=222 Identities=32% Similarity=0.443 Sum_probs=192.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+.. +.+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~i~~~~l~~~~~~--------------~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 64 (233)
T cd03258 1 MIELKNVSKVFGD--------------TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLV 64 (233)
T ss_pred CeEEecceEEccC--------------CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEE
Confidence 3789999988720 00113799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ...++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.+.
T Consensus 65 ~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (233)
T cd03258 65 DGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA--GVPKAEIEERVLELLELVGLEDKADAYPA--- 139 (233)
T ss_pred CCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhcChh---
Confidence 9998742 124678999999999999999999998865432 12344456678999999999988888776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~ 215 (233)
T cd03258 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME 215 (233)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999997656899999999997 5889999999999
Q ss_pred CCeEEEecChhhH
Q 046991 252 NGFVVHNGTLNHL 264 (612)
Q Consensus 252 ~G~iv~~G~~~~~ 264 (612)
+|+++..|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999987765
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-45 Score=371.62 Aligned_cols=218 Identities=33% Similarity=0.554 Sum_probs=189.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 60 (236)
T cd03219 1 LEVRGLTKRF------------------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFD 60 (236)
T ss_pred CeeeeeEEEE------------------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEEC
Confidence 4678898877 345699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHHHcCCccccccc
Q 046991 99 DRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTA--------GRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 99 g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~--------~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
|+++.. .. .++.++|++|++.+++.+||+||+.+........ ...++..++++++++.+|+++..++.
T Consensus 61 g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (236)
T cd03219 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP 140 (236)
T ss_pred CEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC
Confidence 998743 22 2457999999999999999999998875432110 01334456789999999999888887
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||+
T Consensus 141 ~~------~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 141 AG------ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred hh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCE
Confidence 76 8999999999999999999999999999999999999999999999976 5899999999998 58899999
Q ss_pred EEEEcCCeEEEecChhhH
Q 046991 247 LVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~ 264 (612)
+++|++|+++..|+++++
T Consensus 213 i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 213 VTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEEEeCCEEEeecCHHHh
Confidence 999999999999988765
No 53
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.9e-46 Score=386.43 Aligned_cols=209 Identities=31% Similarity=0.458 Sum_probs=187.7
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh--hhhcccEEEEecCCCcCCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA--EHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~l 124 (612)
+++.+|+|+||++++||++||+||||||||||+|+|+|+++| .+|+|.++|+++.. ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 456799999999999999999999999999999999999977 79999999998743 34567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 125 TVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
||+||+.+.+.++ +.+.++..++++++++.+||.+..++.++ +||||||||++||+||+.+|++|+|||||+
T Consensus 82 tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY--GLPKDEAEERAEELLELFELGEAADRPVG------TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhCCchh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 22344556778999999999988888887 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHH
Q 046991 205 GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 267 (612)
|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKE-EGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999975 4899999999998 58899999999999999999999887554
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-45 Score=367.37 Aligned_cols=210 Identities=27% Similarity=0.402 Sum_probs=183.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++++ .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~~----------------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 62 (216)
T TIGR00960 1 MIRFEQVSKAYP----------------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRF 62 (216)
T ss_pred CeEEEEEEEEec----------------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 478999999882 0124699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ..+++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++.++
T Consensus 63 ~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 137 (216)
T TIGR00960 63 NGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII--GVPPRDANERVSAALEKVGLEGKAHALPM--- 137 (216)
T ss_pred CCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChh---
Confidence 9998632 125678999999999999999999999875432 11334456778999999999988888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|+
T Consensus 138 ---~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~ 212 (216)
T TIGR00960 138 ---QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDIN-LVETYRHRTLTLS 212 (216)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 8999999999999999999999999999999999999999999999975 4889999999998 4888999999999
Q ss_pred CCeE
Q 046991 252 NGFV 255 (612)
Q Consensus 252 ~G~i 255 (612)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
No 55
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.2e-45 Score=383.15 Aligned_cols=219 Identities=29% Similarity=0.495 Sum_probs=196.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|+++++ +++.+|+|+||++++||++||+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~------------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i 61 (301)
T TIGR03522 2 SIRVSSLTKLY------------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQV 61 (301)
T ss_pred EEEEEEEEEEE------------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 47899999888 446799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+|+++.. ...++.+||++|++.+++.+||.||+.+.+.+. +.+.++..++++++++.+||.+..+++++ .
T Consensus 62 ~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~ 133 (301)
T TIGR03522 62 CGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY--GMKGQLLKQRVEEMIELVGLRPEQHKKIG------Q 133 (301)
T ss_pred CCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCchh------h
Confidence 9998743 345678999999999999999999999876543 12344556778999999999998898887 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||||||||++||+||+++|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++++|++|++
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQ-EVEAICDRVIIINKGKI 210 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999985 4 689999999998 59999999999999999
Q ss_pred EEecChhhHHHH
Q 046991 256 VHNGTLNHLEER 267 (612)
Q Consensus 256 v~~G~~~~~~~~ 267 (612)
++.|+.+++...
T Consensus 211 ~~~g~~~~~~~~ 222 (301)
T TIGR03522 211 VADKKLDELSAA 222 (301)
T ss_pred EEeCCHHHHHHh
Confidence 999999987553
No 56
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.7e-45 Score=376.73 Aligned_cols=222 Identities=26% Similarity=0.388 Sum_probs=193.7
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+...|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+
T Consensus 4 ~~~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~ 63 (269)
T PRK11831 4 VANLVDMRGVSFTR------------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGE 63 (269)
T ss_pred ccceEEEeCeEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCce
Confidence 34579999999987 346699999999999999999999999999999999999976 7999
Q ss_pred EEECCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 95 LLVNDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 95 I~~~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
|.++|+++.. ...++.++|++|++.+++.+||.||+.+...... ..+.++..+++.++++.+||.+..++.++
T Consensus 64 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 142 (269)
T PRK11831 64 ILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT-QLPAPLLHSTVMMKLEAVGLRGAAKLMPS 142 (269)
T ss_pred EEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 9999998642 1245679999999999999999999987643211 11334455678899999999988888876
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+++
T Consensus 143 ------~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~ 215 (269)
T PRK11831 143 ------ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAY 215 (269)
T ss_pred ------hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEE
Confidence 899999999999999999999999999999999999999999999997656899999999997 5889999999
Q ss_pred EEcCCeEEEecChhhH
Q 046991 249 LLSNGFVVHNGTLNHL 264 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~ 264 (612)
+|++|++++.|+++++
T Consensus 216 ~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 216 IVADKKIVAHGSAQAL 231 (269)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999988765
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-45 Score=378.96 Aligned_cols=224 Identities=25% Similarity=0.394 Sum_probs=191.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++.|+.. ....+.+|+||||++++||++||+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~y~~~-------------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~ 66 (287)
T PRK13637 2 SIKIENLTHIYMEG-------------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIII 66 (287)
T ss_pred EEEEEEEEEECCCC-------------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEE
Confidence 48999999988310 00125799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-----hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc--ccccccccC
Q 046991 98 NDRPMDA-----EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD--HVASSRIGG 169 (612)
Q Consensus 98 ~g~~~~~-----~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~ 169 (612)
+|+++.. ...++.+|||+|++. .+...||+||+.+..... +.++++..++++++++.+||. +..++.+.
T Consensus 67 ~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~- 143 (287)
T PRK13637 67 DGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL--GLSEEEIENRVKRAMNIVGLDYEDYKDKSPF- 143 (287)
T ss_pred CCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC--CCCHHHHHHHHHHHHHHcCCCchhhccCCcc-
Confidence 9998742 245678999999973 333579999999865432 224556667899999999997 56777765
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++|||++ ++.++||++++
T Consensus 144 -----~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~ 217 (287)
T PRK13637 144 -----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIV 217 (287)
T ss_pred -----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 899999999999999999999999999999999999999999999998766899999999997 48889999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 218 MNKGKCELQGTPREVF 233 (287)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998864
No 58
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-45 Score=373.86 Aligned_cols=221 Identities=33% Similarity=0.481 Sum_probs=189.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~~-----------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 61 (243)
T TIGR02315 1 MLEVENLSKVYP-----------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILL 61 (243)
T ss_pred CeEEEeeeeecC-----------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEE
Confidence 378899988771 145699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHHHcCCcccccc
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLR------LTAGRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~------~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
+|+++.. ..+++.++|++|++.+++.+||+||+.+..... ......++..+++.++++.+||.+..++
T Consensus 62 ~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (243)
T TIGR02315 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ 141 (243)
T ss_pred CCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC
Confidence 9988642 235678999999999999999999997642110 0011123445678999999999888888
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||
T Consensus 142 ~~~------~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d 214 (243)
T TIGR02315 142 RAD------QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYAD 214 (243)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcC
Confidence 775 899999999999999999999999999999999999999999999997656899999999998 4889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|++++.|+++++
T Consensus 215 ~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 215 RIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred eEEEEECCEEEecCCHHHh
Confidence 9999999999999988765
No 59
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.6e-45 Score=390.80 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=189.3
Q ss_pred cCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhh----cccEEEEecCC
Q 046991 46 KDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHF----RRISGYVTQDD 118 (612)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~----~~~i~yv~Q~~ 118 (612)
++.+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.. ..+ ++.++||+|++
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 4667799999999999999999999999999999999999987 79999999998753 233 67899999999
Q ss_pred CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEE
Q 046991 119 ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVL 198 (612)
Q Consensus 119 ~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lll 198 (612)
.++|.+||+||+.+...+. +.++++..+++.++++.+||++..+++++ +|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~--~~~~~~~~~~~~~~l~~vgL~~~~~~~p~------~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL--GWPEQERKEKALELLKLVGLEEYEHRYPD------ELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCchhhhCChh------hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876542 22455667889999999999988888876 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 199 IDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 199 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|||||++||+.++..+.+.|+++.++.|+|||++|||++ ++.++||++++|++|+++..|+++++.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999997766899999999998 589999999999999999999998764
No 60
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.4e-45 Score=369.46 Aligned_cols=216 Identities=30% Similarity=0.449 Sum_probs=184.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCceee
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI-----SSRKVSG 93 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~-----~~~~~~G 93 (612)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|
T Consensus 1 i~~~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G 60 (227)
T cd03260 1 IELRDLNVYY------------------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEG 60 (227)
T ss_pred CEEEEEEEEc------------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCe
Confidence 4688998877 3457999999999999999999999999999999999998 55 799
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
+|.++|+++.. ..+++.++|++|++.++ .+||+||+.+...... ....++..++++++++.+|+.+..++.+.
T Consensus 61 ~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 138 (227)
T cd03260 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG-IKLKEELDERVEEALRKAALWDEVKDRLH 138 (227)
T ss_pred EEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCChHHhccCC
Confidence 99999998642 34567899999999888 7899999988654321 11223345778999999999877666640
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.++||+++
T Consensus 139 ----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~ 211 (227)
T cd03260 139 ----ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTA 211 (227)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEE
Confidence 1389999999999999999999999999999999999999999999999753 89999999998 5888999999
Q ss_pred EEcCCeEEEecChhh
Q 046991 249 LLSNGFVVHNGTLNH 263 (612)
Q Consensus 249 lL~~G~iv~~G~~~~ 263 (612)
+|++|++++.|++++
T Consensus 212 ~l~~G~i~~~g~~~~ 226 (227)
T cd03260 212 FLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEeCCEEEEecCccc
Confidence 999999999998765
No 61
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.4e-45 Score=368.81 Aligned_cols=216 Identities=31% Similarity=0.542 Sum_probs=189.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~ 60 (232)
T cd03218 1 LRAENLSKRY------------------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLD 60 (232)
T ss_pred CeEEEEEEEe------------------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEC
Confidence 4688898887 345699999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 99 DRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 99 g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|+++.. .. .++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++.+.
T Consensus 61 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 132 (232)
T cd03218 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR--GLSKKEREEKLEELLEEFHITHLRKSKAS------ 132 (232)
T ss_pred CEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChh------
Confidence 998642 22 3457999999999999999999998865332 12334455678899999999988888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~ 210 (232)
T cd03218 133 SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGK 210 (232)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCe
Confidence 8999999999999999999999999999999999999999999999975 4889999999998 5899999999999999
Q ss_pred EEEecChhhH
Q 046991 255 VVHNGTLNHL 264 (612)
Q Consensus 255 iv~~G~~~~~ 264 (612)
++..|+.+++
T Consensus 211 i~~~~~~~~~ 220 (232)
T cd03218 211 VLAEGTPEEI 220 (232)
T ss_pred EEEEeCHHHh
Confidence 9999988765
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-45 Score=394.84 Aligned_cols=219 Identities=27% Similarity=0.439 Sum_probs=194.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.+
T Consensus 3 ~L~~~nls~~y------------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l 62 (402)
T PRK09536 3 MIDVSDLSVEF------------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLV 62 (402)
T ss_pred eEEEeeEEEEE------------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEE
Confidence 68999999988 456799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA--GRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++.. ++.++.+|||+|++.+++.+||+||+.++....... ...++.+++++++++.+|+.+..++.+.
T Consensus 63 ~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~---- 138 (402)
T PRK09536 63 AGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT---- 138 (402)
T ss_pred CCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh----
Confidence 9998743 456788999999999999999999998753211000 1123456789999999999998888886
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+||||||||++|||+|+++|++|+|||||+|||+.++.+++++|+++++ .|+|||+++|+++ ++.++|||+++|++
T Consensus 139 --~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~ 214 (402)
T PRK09536 139 --SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLAD 214 (402)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999985 5889999999998 58899999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 215 G~iv~~G~~~ev 226 (402)
T PRK09536 215 GRVRAAGPPADV 226 (402)
T ss_pred CEEEEecCHHHH
Confidence 999999999874
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-45 Score=363.02 Aligned_cols=210 Identities=32% Similarity=0.571 Sum_probs=185.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (210)
T cd03269 1 LEVENVTKRF------------------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFD 60 (210)
T ss_pred CEEEEEEEEE------------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4688998877 345699999999999999999999999999999999999876 79999999
Q ss_pred CeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh
Q 046991 99 DRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG 178 (612)
Q Consensus 99 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg 178 (612)
|+++.. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++.+. +|||
T Consensus 61 g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~ 131 (210)
T cd03269 61 GKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK--GLKKEEARRRIDEWLERLELSEYANKRVE------ELSK 131 (210)
T ss_pred CCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCChHHHhCcHh------hCCH
Confidence 998754 45678999999999999999999998865432 12334556778999999999988888776 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEe
Q 046991 179 GERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHN 258 (612)
Q Consensus 179 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 258 (612)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.
T Consensus 132 G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEec
Confidence 999999999999999999999999999999999999999999875 4789999999998 48889999999999999875
Q ss_pred c
Q 046991 259 G 259 (612)
Q Consensus 259 G 259 (612)
|
T Consensus 210 ~ 210 (210)
T cd03269 210 G 210 (210)
T ss_pred C
Confidence 4
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3e-45 Score=365.24 Aligned_cols=217 Identities=36% Similarity=0.515 Sum_probs=189.1
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~~----------------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 62 (220)
T cd03263 1 LQIRNLTKTYK----------------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYIN 62 (220)
T ss_pred CEEEeeEEEeC----------------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEC
Confidence 47889998872 0126799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|+++.. ..+++.++|++|++.+++.+|++||+.+...... .+.++..++++++++.+||.+..++.++ +|
T Consensus 63 g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~L 134 (220)
T cd03263 63 GYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--LPKSEIKEEVELLLRVLGLTDKANKRAR------TL 134 (220)
T ss_pred CEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCHHHHhChhh------hC
Confidence 998743 3456789999999999999999999988654321 2334445678999999999988888876 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|+++
T Consensus 135 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLR 211 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999864 489999999998 488899999999999999
Q ss_pred EecChhhH
Q 046991 257 HNGTLNHL 264 (612)
Q Consensus 257 ~~G~~~~~ 264 (612)
..|+++++
T Consensus 212 ~~~~~~~~ 219 (220)
T cd03263 212 CIGSPQEL 219 (220)
T ss_pred ecCCHHHc
Confidence 99987753
No 65
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=378.28 Aligned_cols=234 Identities=26% Similarity=0.408 Sum_probs=195.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||+++|+.. +...+++|+|||+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~y~~~-------------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 66 (290)
T PRK13634 2 DITFQKVEHRYQYK-------------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTI 66 (290)
T ss_pred EEEEEEEEEEECCC-------------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEE
Confidence 38999999998311 00125699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA-------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ...++.+|||+|++ .++ ..||+||+.++.... ..+.++..++++++++.+||. +..++.+
T Consensus 67 ~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (290)
T PRK13634 67 GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF--GVSEEDAKQKAREMIELVGLPEELLARSP 143 (290)
T ss_pred CCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCChhhhhCCc
Confidence 9998731 34567899999986 455 469999999875422 123455567899999999997 5677777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. .||||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++ ++.++|||+
T Consensus 144 ~------~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv 216 (290)
T PRK13634 144 F------ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQI 216 (290)
T ss_pred c------cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 5 899999999999999999999999999999999999999999999998766899999999998 588999999
Q ss_pred EEEcCCeEEEecChhhHH---HHHHhCCCCCC
Q 046991 248 VLLSNGFVVHNGTLNHLE---ERLKSAGHCIP 276 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~---~~f~~~g~~~p 276 (612)
++|++|++++.|+++++. ..+...+...|
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 999999999999988763 23334455444
No 66
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-45 Score=377.49 Aligned_cols=241 Identities=26% Similarity=0.385 Sum_probs=200.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.|... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|++
T Consensus 1 mi~~~~v~~~y~~~-------------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 65 (288)
T PRK13643 1 MIKFEKVNYTYQPN-------------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTV 65 (288)
T ss_pred CEEEEEEEEEeCCC-------------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEE
Confidence 48999999998310 01124699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA-------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ...++.+|||+|++ .+++ .||.||+.|+.... +.++++.++++.++++.+||. +..++.+
T Consensus 66 ~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 66 GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF--GIPKEKAEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred CCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCChhhccCCc
Confidence 9998631 34677899999986 5565 59999999875432 124556677899999999996 4667766
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++
T Consensus 143 ~------~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~-~~~~~~dri 214 (288)
T PRK13643 143 F------ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMD-DVADYADYV 214 (288)
T ss_pred c------cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEE
Confidence 5 8999999999999999999999999999999999999999999999975 4899999999997 488999999
Q ss_pred EEEcCCeEEEecChhhHH---HHHHhCCCCCCCCCChhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE---ERLKSAGHCIPRHVNVLEF 284 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~---~~f~~~g~~~p~~~n~ad~ 284 (612)
++|++|++++.|+++++. +.+...|+.+|.....++.
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 254 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQ 254 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHH
Confidence 999999999999998863 3445667776655444433
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.1e-45 Score=365.83 Aligned_cols=211 Identities=35% Similarity=0.515 Sum_probs=180.7
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++++.. ....+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++
T Consensus 1 l~~~~l~~~~~~--------------~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~ 64 (218)
T cd03255 1 IELKNLSKTYGG--------------GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVD 64 (218)
T ss_pred CeEeeeEEEecC--------------CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEEC
Confidence 468899988821 00125799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh---h---h-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 99 DRPMDA---E---H-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 99 g~~~~~---~---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
|+++.. . . .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.++
T Consensus 65 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (218)
T cd03255 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA--GVPKKERRERAEELLERVGLGDRLNHYPS--- 139 (218)
T ss_pred CEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhcChh---
Confidence 998642 1 1 3467999999999999999999999875432 11233445678999999999988888776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~ 214 (218)
T cd03255 140 ---ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELR 214 (218)
T ss_pred ---hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEee
Confidence 8999999999999999999999999999999999999999999999976568999999999974 65 999999999
Q ss_pred CCeE
Q 046991 252 NGFV 255 (612)
Q Consensus 252 ~G~i 255 (612)
+|++
T Consensus 215 ~G~i 218 (218)
T cd03255 215 DGKI 218 (218)
T ss_pred CCcC
Confidence 9974
No 68
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.5e-45 Score=368.26 Aligned_cols=218 Identities=30% Similarity=0.498 Sum_probs=190.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~------------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 60 (240)
T PRK09493 1 MIEFKNVSKHF------------------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIV 60 (240)
T ss_pred CEEEEeEEEEE------------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 37899999887 345699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++.. ...++.++|++|++.+++.+||+||+.+..... .....++..+++.++++.+||++..++.+.
T Consensus 61 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 135 (240)
T PRK09493 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV-RGASKEEAEKQARELLAKVGLAERAHHYPS---- 135 (240)
T ss_pred CCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh-cCCCHHHHHHHHHHHHHHcCChHHHhcChh----
Confidence 9998742 245678999999999999999999998764211 112344456678999999999888888776
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++
T Consensus 136 --~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~ 211 (240)
T PRK09493 136 --ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFIDK 211 (240)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999975 4899999999998 58889999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+.+++
T Consensus 212 G~i~~~g~~~~~ 223 (240)
T PRK09493 212 GRIAEDGDPQVL 223 (240)
T ss_pred CEEEeeCCHHHH
Confidence 999999988765
No 69
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-45 Score=369.48 Aligned_cols=217 Identities=30% Similarity=0.501 Sum_probs=190.1
Q ss_pred EEEeeeEEEEecccccccceecccccccCc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDP-KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
++++|+++++ ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 l~~~~l~~~~------------------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 60 (242)
T cd03295 1 IEFENVTKRY------------------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFI 60 (242)
T ss_pred CEEEEEEEEe------------------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEE
Confidence 4678998887 23 5699999999999999999999999999999999999976 7899999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH--VASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~ 172 (612)
||+++.. ...++.++|++|++.+++.+||+||+.+..... ....++..+++.++++.+|+.+ ..++.+.
T Consensus 61 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---- 134 (242)
T cd03295 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPKEKIRERADELLALVGLDPAEFADRYPH---- 134 (242)
T ss_pred CCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcHHHHhcChh----
Confidence 9998642 345678999999999999999999998865432 1234455677899999999985 6677665
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++
T Consensus 135 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~ 211 (242)
T cd03295 135 --ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN 211 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 899999999999999999999999999999999999999999999997655899999999997 58899999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 212 G~i~~~~~~~~~ 223 (242)
T cd03295 212 GEIVQVGTPDEI 223 (242)
T ss_pred CEEEEecCHHHH
Confidence 999999988765
No 70
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.9e-45 Score=363.89 Aligned_cols=216 Identities=33% Similarity=0.527 Sum_probs=187.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+.. +....++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~v~~~~~~--------------~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 64 (218)
T cd03266 1 MITADALTKRFRD--------------VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATV 64 (218)
T ss_pred CeEEEEEEEecCC--------------CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEE
Confidence 3789999998821 00112699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+|+++.. ..+++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++.++ .
T Consensus 65 ~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~ 136 (218)
T cd03266 65 DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY--GLKGDELTARLEELADRLGMEELLDRRVG------G 136 (218)
T ss_pred CCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhhhhh------h
Confidence 9998753 345678999999999999999999998765432 12344556788999999999988888876 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQ-EVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999965 5889999999997 58899999999999999
Q ss_pred EEec
Q 046991 256 VHNG 259 (612)
Q Consensus 256 v~~G 259 (612)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8754
No 71
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-45 Score=376.74 Aligned_cols=236 Identities=28% Similarity=0.346 Sum_probs=197.1
Q ss_pred EEEeeeEEEEecccccccc------eecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcee
Q 046991 19 LETKNLSYKLCSKFDEFNW------VYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVS 92 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~ 92 (612)
|+++|++++|+....+-.. ...+++++++++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+
T Consensus 1 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~ 78 (269)
T cd03294 1 IKIKGLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TS 78 (269)
T ss_pred CccccchhhcCCchhHHHHHHhhhhhhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CC
Confidence 4667788777532211000 111445666788899999999999999999999999999999999999977 79
Q ss_pred eEEEECCeeCCh---hh----hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccc
Q 046991 93 GKLLVNDRPMDA---EH----FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 93 G~I~~~g~~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
|+|.++|+++.. .. .++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++
T Consensus 79 G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 156 (269)
T cd03294 79 GKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ--GVPRAEREERAAEALELVGLEGWEHK 156 (269)
T ss_pred eEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhC
Confidence 999999998642 11 2357999999999999999999998875432 11234455678999999999988888
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||
T Consensus 157 ~~~------~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d 229 (269)
T cd03294 157 YPD------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGD 229 (269)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 886 899999999999999999999999999999999999999999999997666899999999998 5889999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
++++|++|++++.|+++++.
T Consensus 230 ~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 230 RIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999887653
No 72
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-45 Score=374.57 Aligned_cols=221 Identities=26% Similarity=0.422 Sum_probs=192.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.++ +.+.+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 66 (279)
T PRK13650 4 IIEVKNLTFKYK---------------EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIII 66 (279)
T ss_pred eEEEEeEEEEcC---------------CCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 689999999883 11224599999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++ ..++..||+||+.+..... +.++++..++++++++.+||.+..++.++
T Consensus 67 ~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 139 (279)
T PRK13650 67 DGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK--GIPHEEMKERVNEALELVGMQDFKEREPA----- 139 (279)
T ss_pred CCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC--CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----
Confidence 9998742 34567899999997 4677789999999875322 22455566789999999999988888876
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++ ++ ..||++++|++|
T Consensus 140 -~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G 216 (279)
T PRK13650 140 -RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNG 216 (279)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998766899999999997 46 589999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13650 217 QVESTSTPRELF 228 (279)
T ss_pred EEEEECCHHHHH
Confidence 999999998764
No 73
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8e-45 Score=382.68 Aligned_cols=236 Identities=23% Similarity=0.342 Sum_probs=196.8
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++||+++|..+.... .+ ....+...+++|||+++++||+++|+|+||||||||+++|+|++++ .+|+|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~-~~----~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I 78 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQ-WF----WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEV 78 (331)
T ss_pred CceEEEeCeEEEECCCCccc-cc----cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEE
Confidence 45799999999984211000 00 0011235799999999999999999999999999999999999976 69999
Q ss_pred EECCeeCCh------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 046991 96 LVNDRPMDA------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSR 166 (612)
Q Consensus 96 ~~~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 166 (612)
.++|+++.. ..+++.++||+|++ .++|.+||.||+.+......+..++++.++++.++++.+||. +..++.
T Consensus 79 ~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 79 AWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred EECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC
Confidence 999998742 23567899999997 588999999999886543211224556677889999999994 456776
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+. +|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|+|++|||++ .+.++||+
T Consensus 159 p~------~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dr 231 (331)
T PRK15079 159 PH------EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDR 231 (331)
T ss_pred cc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 65 899999999999999999999999999999999999999999999998766899999999998 48889999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|++++.|+++++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999987764
No 74
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.7e-45 Score=369.34 Aligned_cols=218 Identities=32% Similarity=0.519 Sum_probs=190.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 62 (250)
T PRK11264 3 AIEVKNLVKKF------------------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRV 62 (250)
T ss_pred cEEEeceEEEE------------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEE
Confidence 58999999888 335699999999999999999999999999999999999976 7899999
Q ss_pred CCeeCCh-----------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 046991 98 NDRPMDA-----------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 98 ~g~~~~~-----------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
+|+++.. ...++.++|++|++.+++.+||+||+.+...... ....++..+++.++++.+||.+..++.
T Consensus 63 ~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~ 141 (250)
T PRK11264 63 GDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEPKEEATARARELLAKVGLAGKETSY 141 (250)
T ss_pred CCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCcchhhCC
Confidence 9988642 2346789999999999999999999987542111 123444556788999999998877777
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||+
T Consensus 142 ~~------~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~-~~~~~~d~ 213 (250)
T PRK11264 142 PR------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS-FARDVADR 213 (250)
T ss_pred hh------hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCE
Confidence 76 8999999999999999999999999999999999999999999999975 4889999999998 58899999
Q ss_pred EEEEcCCeEEEecChhhH
Q 046991 247 LVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~ 264 (612)
+++|++|++++.|+++++
T Consensus 214 i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 214 AIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 75
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-44 Score=365.15 Aligned_cols=218 Identities=35% Similarity=0.516 Sum_probs=189.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~ 60 (236)
T TIGR03864 1 ALEVAGLSFAY------------------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISV 60 (236)
T ss_pred CEEEEeeEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEE
Confidence 37889999887 345699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+|.++.. ...++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.++ .
T Consensus 61 ~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~ 132 (236)
T TIGR03864 61 AGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH--GLSRAEARERIAALLARLGLAERADDKVR------E 132 (236)
T ss_pred CCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhcCChh------h
Confidence 9988642 233457999999999888999999998765432 12334455678899999999988888876 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++
T Consensus 133 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i 210 (236)
T TIGR03864 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRV 210 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999976568999999999984 65 5999999999999
Q ss_pred EEecChhhHH
Q 046991 256 VHNGTLNHLE 265 (612)
Q Consensus 256 v~~G~~~~~~ 265 (612)
+..|+++++.
T Consensus 211 ~~~~~~~~~~ 220 (236)
T TIGR03864 211 LADGAAAELR 220 (236)
T ss_pred EEeCCHHHHH
Confidence 9999887664
No 76
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-45 Score=354.40 Aligned_cols=219 Identities=33% Similarity=0.486 Sum_probs=192.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||+..| +..++|++||+++++||+++|+|+||||||||||+|+|+.++ .+|+|.
T Consensus 2 ~mL~v~~l~~~Y------------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~ 61 (237)
T COG0410 2 PMLEVENLSAGY------------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRII 61 (237)
T ss_pred CceeEEeEeecc------------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEE
Confidence 468999999877 668899999999999999999999999999999999999977 689999
Q ss_pred ECCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCC
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG-LDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~ 171 (612)
++|++++. +..+..++||||...+||.|||+|||..++..+.. ++.....++++.+.+= |.+.++++-|
T Consensus 62 ~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP~Lker~~~~aG--- 135 (237)
T COG0410 62 FDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFPRLKERRNQRAG--- 135 (237)
T ss_pred ECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHChhHHHHhcCccc---
Confidence 99999863 45678899999999999999999999987654321 1111222666776664 5677778777
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++.|.||+++.++... +.+++||.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEe
Confidence 8999999999999999999999999999999999999999999999987778999999999985 899999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|+++++|+.+++.
T Consensus 212 ~Griv~~G~~~eL~ 225 (237)
T COG0410 212 NGRIVLSGTAAELL 225 (237)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998874
No 77
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.6e-45 Score=360.84 Aligned_cols=207 Identities=30% Similarity=0.494 Sum_probs=182.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++++ +++++|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 60 (208)
T cd03268 1 LKTNDLTKTY------------------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFD 60 (208)
T ss_pred CEEEEEEEEE------------------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEC
Confidence 4688998887 345799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|+++.. ...++.++|++|++.+++.+||+||+.+..... .. ..++++++++.+|+.+..++.++ .||
T Consensus 61 g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~------~LS 128 (208)
T cd03268 61 GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL--GI----RKKRIDEVLDVVGLKDSAKKKVK------GFS 128 (208)
T ss_pred CCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHhhhHh------hCC
Confidence 987643 345677999999999999999999998865432 11 23567889999999988888876 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+++|++++|++|++++
T Consensus 129 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 129 LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999975 5899999999998 4888999999999999987
Q ss_pred ec
Q 046991 258 NG 259 (612)
Q Consensus 258 ~G 259 (612)
.|
T Consensus 207 ~g 208 (208)
T cd03268 207 EG 208 (208)
T ss_pred cC
Confidence 65
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=372.24 Aligned_cols=218 Identities=28% Similarity=0.372 Sum_probs=190.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 4 ~l~~~~l~~~~~-----------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 64 (274)
T PRK13647 4 IIEVEDLHFRYK-----------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKV 64 (274)
T ss_pred eEEEEEEEEEeC-----------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEE
Confidence 689999999882 235699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++. .++..||+||+.+..... ...+++.+++++++++.+||.+..++.+.
T Consensus 65 ~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 137 (274)
T PRK13647 65 MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM--GLDKDEVERRVEEALKAVRMWDFRDKPPY----- 137 (274)
T ss_pred CCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----
Confidence 9998743 345678999999973 445679999998864321 12344556778999999999988888876
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|
T Consensus 138 -~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~-~~~~~~d~i~~l~~G 214 (274)
T PRK13647 138 -HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD-LAAEWADQVIVLKEG 214 (274)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999764 899999999998 478899999999999
Q ss_pred eEEEecChhhH
Q 046991 254 FVVHNGTLNHL 264 (612)
Q Consensus 254 ~iv~~G~~~~~ 264 (612)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998764
No 79
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=363.67 Aligned_cols=218 Identities=31% Similarity=0.472 Sum_probs=186.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.++. +...+.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 5 ~l~~~~l~~~~~~--------------~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 68 (233)
T PRK11629 5 LLQCDNLCKRYQE--------------GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIF 68 (233)
T ss_pred eEEEEeEEEEcCC--------------CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE
Confidence 6899999998831 00125699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh---h---hh-cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 98 NDRPMDA---E---HF-RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 98 ~g~~~~~---~---~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
+|+++.. . .. ++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+||.+..++.+.
T Consensus 69 ~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 144 (233)
T PRK11629 69 NGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--KKKPAEINSRALEMLAAVGLEHRANHRPS-- 144 (233)
T ss_pred CCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCChh--
Confidence 9998742 1 12 257999999999999999999999865432 11334455778999999999988787775
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|
T Consensus 145 ----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l 218 (233)
T PRK11629 145 ----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEM 218 (233)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEE
Confidence 8999999999999999999999999999999999999999999999976568999999999974 554 6899999
Q ss_pred cCCeEEEecCh
Q 046991 251 SNGFVVHNGTL 261 (612)
Q Consensus 251 ~~G~iv~~G~~ 261 (612)
++|+++..|+.
T Consensus 219 ~~G~i~~~~~~ 229 (233)
T PRK11629 219 RDGRLTAELSL 229 (233)
T ss_pred ECCEEEEEecc
Confidence 99999988764
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.9e-45 Score=363.51 Aligned_cols=214 Identities=33% Similarity=0.487 Sum_probs=185.6
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++++ +++++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 60 (222)
T cd03224 1 LEVENLNAGY------------------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFD 60 (222)
T ss_pred CEEeeEEeec------------------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEC
Confidence 4688888877 345699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCC
Q 046991 99 DRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKEL-GLDHVASSRIGGGSSN 173 (612)
Q Consensus 99 g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~ 173 (612)
|+++.. .. .++.++|++|++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++.+.
T Consensus 61 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~~~----- 131 (222)
T cd03224 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR----RAKRKARLERVYELFPRLKERRKQLAG----- 131 (222)
T ss_pred CEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC----chhHHHHHHHHHHHHHhhhhhhhCchh-----
Confidence 988642 22 35679999999999999999999988654321 223345677888888 57777777776
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|
T Consensus 132 -~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 208 (222)
T cd03224 132 -TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERG 208 (222)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCC
Confidence 8999999999999999999999999999999999999999999999975 5889999999997 588999999999999
Q ss_pred eEEEecChhhH
Q 046991 254 FVVHNGTLNHL 264 (612)
Q Consensus 254 ~iv~~G~~~~~ 264 (612)
+++..|+++++
T Consensus 209 ~i~~~~~~~~~ 219 (222)
T cd03224 209 RVVLEGTAAEL 219 (222)
T ss_pred eEEEeCCHHHH
Confidence 99999987765
No 81
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.9e-45 Score=363.23 Aligned_cols=218 Identities=30% Similarity=0.441 Sum_probs=181.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++++.. +....++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~v~~~~~~--------------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 64 (228)
T cd03257 1 LLEVKNLSVSFPT--------------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIF 64 (228)
T ss_pred CeEEEeeeEeccC--------------CCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEE
Confidence 4789999988821 00113699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHH-HHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASR-VRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ..+++.++|++|++ .+++.+||+||+.+........ ..++..++ ++++++.+++. +..++.+
T Consensus 65 ~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 65 DGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc
Confidence 9998742 24567899999998 5677899999998765432111 12222233 46899999995 5667777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
+ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++
T Consensus 144 ~------~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i 216 (228)
T cd03257 144 H------ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRV 216 (228)
T ss_pred h------hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeE
Confidence 5 899999999999999999999999999999999999999999999998655889999999998 588899999
Q ss_pred EEEcCCeEEEec
Q 046991 248 VLLSNGFVVHNG 259 (612)
Q Consensus 248 ~lL~~G~iv~~G 259 (612)
++|++|+++..|
T Consensus 217 ~~l~~G~i~~~g 228 (228)
T cd03257 217 AVMYAGKIVEEG 228 (228)
T ss_pred EEEeCCEEEecC
Confidence 999999998654
No 82
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.9e-44 Score=365.92 Aligned_cols=218 Identities=28% Similarity=0.413 Sum_probs=188.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---eeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK---VSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~---~~G~ 94 (612)
.|+++|+++++ +++.+++|+|+++++||+++|+||||||||||+++|+|+.+|.+ .+|+
T Consensus 1 ~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~ 62 (247)
T TIGR00972 1 AIEIENLNLFY------------------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK 62 (247)
T ss_pred CEEEEEEEEEE------------------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceE
Confidence 37899999888 33569999999999999999999999999999999999997621 1899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 165 (612)
|.++|+++.. ...++.++|++|++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..++
T Consensus 63 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 63 VLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-IKDKKELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred EEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 9999998742 245678999999999988 999999998754321 113445567789999999997 56666
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.++|+++++ ++|||++||+++ ++.+++|
T Consensus 141 ~~~------~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d 211 (247)
T TIGR00972 141 SAL------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISD 211 (247)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCC
Confidence 665 8999999999999999999999999999999999999999999999865 389999999998 5889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|+++..|+++++
T Consensus 212 ~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999988765
No 83
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-45 Score=355.54 Aligned_cols=221 Identities=27% Similarity=0.506 Sum_probs=204.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|++++|++++ +++.+++|+||++++||+.+++|||||||||.+|+|.|+++| ++|+|.+
T Consensus 2 ~L~ie~vtK~F------------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~ 61 (300)
T COG4152 2 ALEIEGVTKSF------------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITW 61 (300)
T ss_pred ceEEecchhcc------------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEE
Confidence 46777777666 788999999999999999999999999999999999999987 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
+|.+++ ...+.+|||.|.+..+++.+||.|.|.|.|.++ +.++++.+++++.+|+++++......+|. +||
T Consensus 62 ~g~~~~-~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk--Gm~~~e~~~~~~~wLer~~i~~~~~~kIk------~LS 132 (300)
T COG4152 62 NGGPLS-QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK--GMPKAEIQKKLQAWLERLEIVGKKTKKIK------ELS 132 (300)
T ss_pred cCcchh-hhhhhhcccChhhhccCccCcHHHHHHHHHHhc--CCcHHHHHHHHHHHHHhccccccccchHH------Hhh
Confidence 999986 456778999999999999999999999999875 45788889999999999999999888886 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
.|++|++.+..+++++|++++||||+|||||.+...+-+.+.++++ .|.|||+++|.++ .+.++||++++|++|+.|.
T Consensus 133 KGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~ 210 (300)
T COG4152 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRME-HVEELCDRLLMLKKGQTVL 210 (300)
T ss_pred hhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHH-HHHHHhhhhheecCCceEE
Confidence 9999999999999999999999999999999999999999999964 6999999999998 5999999999999999999
Q ss_pred ecChhhHHHHHH
Q 046991 258 NGTLNHLEERLK 269 (612)
Q Consensus 258 ~G~~~~~~~~f~ 269 (612)
+|+.+++...+.
T Consensus 211 ~G~v~~ir~~~G 222 (300)
T COG4152 211 YGTVEDIRRSFG 222 (300)
T ss_pred eccHHHHHHhcC
Confidence 999999887654
No 84
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=367.49 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=190.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 5 ~l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 64 (255)
T PRK11300 5 LLSVSGLMMRF------------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILL 64 (255)
T ss_pred eEEEeeEEEEE------------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEE
Confidence 69999999987 346799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccC-----------CCC--CHHHHHHHHHHHHHHcCCc
Q 046991 98 NDRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRL-----------TAG--RRKQAASRVRGLLKELGLD 160 (612)
Q Consensus 98 ~g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-----------~~~--~~~~~~~~v~~~l~~lgL~ 160 (612)
+|+++.. .. .+..++|++|++.+++.+||+||+.++..... +.. ..++..++++++++.+|+.
T Consensus 65 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 144 (255)
T PRK11300 65 RGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL 144 (255)
T ss_pred CCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh
Confidence 9998742 22 34568999999999999999999998643110 000 1123345688899999998
Q ss_pred ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHH
Q 046991 161 HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRI 240 (612)
Q Consensus 161 ~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i 240 (612)
+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++
T Consensus 145 ~~~~~~~~------~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~ 217 (255)
T PRK11300 145 EHANRQAG------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LV 217 (255)
T ss_pred hhhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH
Confidence 88888876 899999999999999999999999999999999999999999999997655899999999998 58
Q ss_pred HhccCeEEEEcCCeEEEecChhhH
Q 046991 241 LELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 241 ~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
.++||++++|++|++++.|+++++
T Consensus 218 ~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 218 MGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHhCCEEEEEECCeEEecCCHHHH
Confidence 899999999999999999998765
No 85
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=375.37 Aligned_cols=223 Identities=26% Similarity=0.393 Sum_probs=189.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.|+.. ......+|+|+|+++++||++||+||||||||||+++|+|+++| .+|+|.+
T Consensus 2 ~i~~~~l~~~y~~~-------------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~ 66 (305)
T PRK13651 2 QIKVKNIVKIFNKK-------------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEW 66 (305)
T ss_pred EEEEEEEEEEECCC-------------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE
Confidence 48999999998311 01124699999999999999999999999999999999999977 6899999
Q ss_pred CCeeCC---------------------------hhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHH
Q 046991 98 NDRPMD---------------------------AEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASR 149 (612)
Q Consensus 98 ~g~~~~---------------------------~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~ 149 (612)
+|++.. ....++.+|||+|++ ..+...||+||+.|+.... ..++++..++
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~--~~~~~~~~~~ 144 (305)
T PRK13651 67 IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM--GVSKEEAKKR 144 (305)
T ss_pred eceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc--CCCHHHHHHH
Confidence 987541 134567899999985 2333569999999875432 2245566778
Q ss_pred HHHHHHHcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcE
Q 046991 150 VRGLLKELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKT 228 (612)
Q Consensus 150 v~~~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 228 (612)
++++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 145 ~~~~l~~~gL~~~~~~~~~~------~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t 217 (305)
T PRK13651 145 AAKYIELVGLDESYLQRSPF------ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKT 217 (305)
T ss_pred HHHHHHHcCCChhhhhCChh------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 99999999996 67777776 8999999999999999999999999999999999999999999999974 5899
Q ss_pred EEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 229 IILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 229 ii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
||++|||++ .+.++|||+++|++|++++.|+++++.
T Consensus 218 iiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 218 IILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999997 488999999999999999999998863
No 86
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-44 Score=370.94 Aligned_cols=231 Identities=29% Similarity=0.457 Sum_probs=196.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 5 ~l~~~~l~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i 65 (283)
T PRK13636 5 ILKVEELNYNYS-----------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILF 65 (283)
T ss_pred eEEEEeEEEEeC-----------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEE
Confidence 689999999882 235699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCC-----hhhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMD-----AEHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~-----~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++. ...+++.++|++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++.+.
T Consensus 66 ~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 140 (283)
T PRK13636 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL--KLPEDEVRKRVDNALKRTGIEHLKDKPTH--- 140 (283)
T ss_pred CCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhCCcc---
Confidence 999873 1346678999999973 234579999998864321 12345556788999999999988888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|+
T Consensus 141 ---~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~ 216 (283)
T PRK13636 141 ---CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK 216 (283)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999998766899999999998 4788999999999
Q ss_pred CCeEEEecChhhHHH---HHHhCCCCCC
Q 046991 252 NGFVVHNGTLNHLEE---RLKSAGHCIP 276 (612)
Q Consensus 252 ~G~iv~~G~~~~~~~---~f~~~g~~~p 276 (612)
+|++++.|+++++.. .....+.++|
T Consensus 217 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 217 EGRVILQGNPKEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred CCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999987643 3334454443
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.3e-45 Score=359.67 Aligned_cols=192 Identities=35% Similarity=0.531 Sum_probs=169.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCC-cCCCCCHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDA-LFPLLTVE 127 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~ 127 (612)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.....++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 6799999999999999999999999999999999999976 79999999998754456678999999974 34457999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD 207 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 207 (612)
||+.+..... . +..++++++++.+||.+..++.++ +||||||||++||++|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL----D--AGNEQAETVLKDLDLYALKERHPL------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc----C--ccHHHHHHHHHHcCCchhcCCCch------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998764321 1 123568899999999988888876 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 208 SASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 208 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999975 4889999999998 488899999999999874
No 88
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=366.80 Aligned_cols=214 Identities=30% Similarity=0.465 Sum_probs=187.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 60 (255)
T PRK11248 1 MLQISHLYADY------------------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITL 60 (255)
T ss_pred CEEEEEEEEEe------------------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 47899999887 335699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
+|+++.. .++.++|++|++.+++.+||+||+.+..... ....++..+++.++++.+||.+..++.+. .||
T Consensus 61 ~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS 130 (255)
T PRK11248 61 DGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA--GVEKMQRLEIAHQMLKKVGLEGAEKRYIW------QLS 130 (255)
T ss_pred CCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhHhhCChh------hCC
Confidence 9998753 2346899999999999999999998764432 12344455678999999999988888776 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc--CCeE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS--NGFV 255 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~--~G~i 255 (612)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEE
Confidence 999999999999999999999999999999999999999999986656899999999998 5889999999998 5999
Q ss_pred EEecChh
Q 046991 256 VHNGTLN 262 (612)
Q Consensus 256 v~~G~~~ 262 (612)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9887654
No 89
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=367.74 Aligned_cols=210 Identities=26% Similarity=0.431 Sum_probs=186.6
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|
T Consensus 10 ~~~l~i~~l~~~~------------------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i 69 (257)
T PRK11247 10 GTPLLLNAVSKRY------------------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGEL 69 (257)
T ss_pred CCcEEEEEEEEEE------------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEE
Confidence 3458999999988 345799999999999999999999999999999999999976 79999
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
.++|.++. .+++.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..++.+. .
T Consensus 70 ~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~--~~~~~~~~~l~~~gl~~~~~~~~~------~ 133 (257)
T PRK11247 70 LAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK------G--QWRDAALQALAAVGLADRANEWPA------A 133 (257)
T ss_pred EECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc------c--hHHHHHHHHHHHcCChhHhcCChh------h
Confidence 99998763 456789999999999998999999987421 1 123568899999999988888776 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++
T Consensus 134 LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKI 212 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999997666899999999998 48889999999999999
Q ss_pred EEecChh
Q 046991 256 VHNGTLN 262 (612)
Q Consensus 256 v~~G~~~ 262 (612)
++.|+.+
T Consensus 213 ~~~~~~~ 219 (257)
T PRK11247 213 GLDLTVD 219 (257)
T ss_pred Eeecccc
Confidence 9988754
No 90
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-44 Score=375.79 Aligned_cols=234 Identities=27% Similarity=0.412 Sum_probs=195.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.|+.. ....+.+|+|+|+++++||++||+|+||||||||+++|+|+.+| .+|+|+
T Consensus 20 ~~l~~~nl~~~y~~~-------------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~ 84 (320)
T PRK13631 20 IILRVKNLYCVFDEK-------------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQ 84 (320)
T ss_pred ceEEEEeEEEEeCCC-------------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEE
Confidence 479999999998310 01234699999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh-------------------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 046991 97 VNDRPMDA-------------------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLK 155 (612)
Q Consensus 97 ~~g~~~~~-------------------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~ 155 (612)
++|+++.. ..+++.++||+|++ .+++. ||+||+.++.... ..+.++..++++++++
T Consensus 85 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~l~ 161 (320)
T PRK13631 85 VGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL--GVKKSEAKKLAKFYLN 161 (320)
T ss_pred ECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc--CCCHHHHHHHHHHHHH
Confidence 99987632 24567899999987 46664 9999998875321 1245556678899999
Q ss_pred HcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc
Q 046991 156 ELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 156 ~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 234 (612)
.+||. +..++.+. +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||
T Consensus 162 ~~gL~~~~~~~~~~------~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLERSPF------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HcCCChhHhcCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 99996 56666664 8999999999999999999999999999999999999999999999975 5899999999
Q ss_pred CCchHHHhccCeEEEEcCCeEEEecChhhHH---HHHHhCCCCCC
Q 046991 235 QPGFRILELFDRLVLLSNGFVVHNGTLNHLE---ERLKSAGHCIP 276 (612)
Q Consensus 235 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~---~~f~~~g~~~p 276 (612)
+++ ++.++||++++|++|+++..|+++++. +.+...+...|
T Consensus 235 d~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 235 TME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 997 478999999999999999999998763 33444555544
No 91
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=364.24 Aligned_cols=221 Identities=28% Similarity=0.404 Sum_probs=189.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~ 64 (250)
T PRK14247 3 KIEIRDLKVSF------------------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGE 64 (250)
T ss_pred eEEEEeeEEEE------------------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceE
Confidence 58999999887 3356999999999999999999999999999999999998642 36999
Q ss_pred EEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 046991 95 LLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASSRI 167 (612)
Q Consensus 95 I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 167 (612)
|.++|+++.. ..+++.++|++|++.+++.+||+||+.+...........++..++++++++.+||.+ ..++.+
T Consensus 65 i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 144 (250)
T PRK14247 65 VYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA 144 (250)
T ss_pred EEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc
Confidence 9999998642 356678999999998899999999998865432111123445577899999999864 345555
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|+|++||+++ ++.+.||++
T Consensus 145 ~------~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i 215 (250)
T PRK14247 145 G------KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYV 215 (250)
T ss_pred c------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEE
Confidence 4 899999999999999999999999999999999999999999999985 3 789999999998 488899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999987763
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=364.09 Aligned_cols=218 Identities=29% Similarity=0.524 Sum_probs=190.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 62 (241)
T PRK10895 3 TLTAKNLAKAY------------------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIII 62 (241)
T ss_pred eEEEeCcEEEe------------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 68899999887 345799999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+|+.+..++.++
T Consensus 63 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 136 (241)
T PRK10895 63 DDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD-DLSAEQREDRANELMEEFHIEHLRDSMGQ----- 136 (241)
T ss_pred CCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc-ccCHHHHHHHHHHHHHHcCCHHHhhcchh-----
Confidence 9998742 2245779999999999999999999987643321 11234455678999999999887777775
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|++|
T Consensus 137 -~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G 213 (241)
T PRK10895 137 -SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQG 213 (241)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCC
Confidence 8999999999999999999999999999999999999999999999874 5899999999997 588999999999999
Q ss_pred eEEEecChhhH
Q 046991 254 FVVHNGTLNHL 264 (612)
Q Consensus 254 ~iv~~G~~~~~ 264 (612)
++++.|+++++
T Consensus 214 ~i~~~~~~~~~ 224 (241)
T PRK10895 214 HLIAHGTPTEI 224 (241)
T ss_pred eEEeeCCHHHH
Confidence 99999998765
No 93
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.1e-44 Score=357.54 Aligned_cols=208 Identities=33% Similarity=0.499 Sum_probs=181.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~~-----------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~ 61 (214)
T TIGR02673 1 MIEFHNVSKAYP-----------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRI 61 (214)
T ss_pred CEEEEeeeEEeC-----------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEE
Confidence 378999998872 235699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ..+++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+|+.+..++.+.
T Consensus 62 ~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (214)
T TIGR02673 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR--GKKEREIQRRVGAALRQVGLEHKADAFPE--- 136 (214)
T ss_pred CCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChh---
Confidence 9998742 135678999999999999999999999875432 11234455778999999999887787776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|+
T Consensus 137 ---~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~ 211 (214)
T TIGR02673 137 ---QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLS-LVDRVAHRVIILD 211 (214)
T ss_pred ---hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEec
Confidence 8999999999999999999999999999999999999999999999865 4889999999998 5888999999999
Q ss_pred CCe
Q 046991 252 NGF 254 (612)
Q Consensus 252 ~G~ 254 (612)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=372.16 Aligned_cols=223 Identities=28% Similarity=0.413 Sum_probs=191.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++||++.|..+ ....+.+|+|||++|++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~y~~~-------------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~ 66 (286)
T PRK13646 2 TIRFDNVSYTYQKG-------------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTV 66 (286)
T ss_pred EEEEEEEEEEECCC-------------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 48999999998310 01135699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA-------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ..+++.+|||+|++ .+++ .||+||+.+..... ..+.++..++++++++.+||. +..++.+
T Consensus 67 ~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (286)
T PRK13646 67 DDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF--KMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143 (286)
T ss_pred CCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 9998732 24677899999986 4565 49999999875322 124555667899999999997 5677776
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. .||||||||++||++|+.+|++++|||||+|||+.++..+.++|++++++.|+|||++||+++ ++.++||++
T Consensus 144 ~------~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri 216 (286)
T PRK13646 144 F------QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEV 216 (286)
T ss_pred c------cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEE
Confidence 5 899999999999999999999999999999999999999999999997666899999999998 488999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988753
No 95
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.2e-44 Score=365.57 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=189.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 5 ~l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~ 64 (257)
T PRK10619 5 KLNVIDLHKRY------------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVV 64 (257)
T ss_pred cEEEeeeEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE
Confidence 48999999988 346799999999999999999999999999999999999976 7899999
Q ss_pred CCeeCCh----------------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc
Q 046991 98 NDRPMDA----------------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH 161 (612)
Q Consensus 98 ~g~~~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~ 161 (612)
+|+++.. ..+++.++|++|++.+++.+||+||+.++.... .....++..+++.++++.+|+.+
T Consensus 65 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~ 143 (257)
T PRK10619 65 NGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-LGLSKQEARERAVKYLAKVGIDE 143 (257)
T ss_pred CCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCCh
Confidence 9987631 234678999999999999999999998754211 11234455678899999999987
Q ss_pred cc-cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHH
Q 046991 162 VA-SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRI 240 (612)
Q Consensus 162 ~~-~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i 240 (612)
.. ++.+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++
T Consensus 144 ~~~~~~~~------~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~-~~ 215 (257)
T PRK10619 144 RAQGKYPV------HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FA 215 (257)
T ss_pred hhhhCCcc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HH
Confidence 64 66655 8999999999999999999999999999999999999999999999975 4899999999998 58
Q ss_pred HhccCeEEEEcCCeEEEecChhhH
Q 046991 241 LELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 241 ~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
.++||++++|++|++++.|+++++
T Consensus 216 ~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 216 RHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHh
Confidence 889999999999999999988765
No 96
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.3e-44 Score=365.28 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=190.0
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++
T Consensus 1 i~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (252)
T TIGR03005 1 VRFSDVTKRF------------------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVE 60 (252)
T ss_pred CEEEEEEEEe------------------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4788999887 335699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh----------------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc
Q 046991 99 DRPMDA----------------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 99 g~~~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~ 162 (612)
|+++.. ..+++.++|++|++.+++..|+.||+.++.... .....++..+++.++++.+|+.+.
T Consensus 61 g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~ 139 (252)
T TIGR03005 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV-LGMARAEAEKRAMELLDMVGLADK 139 (252)
T ss_pred CEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhH
Confidence 987631 234678999999999999999999998753211 111344455678999999999888
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+
T Consensus 140 ~~~~~~------~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~ 212 (252)
T TIGR03005 140 ADHMPA------QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FARE 212 (252)
T ss_pred hhcChh------hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHH
Confidence 777765 899999999999999999999999999999999999999999999997656899999999998 5888
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
++|++++|++|++++.|+.+++
T Consensus 213 ~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 213 FADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred hcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999988765
No 97
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=363.00 Aligned_cols=217 Identities=30% Similarity=0.453 Sum_probs=188.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++|+++++ +++.+|+++|+++++||+++|+||||||||||+++|+|..+| .+|+|.
T Consensus 4 ~~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~ 63 (237)
T PRK11614 4 VMLSFDKVSAHY------------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIV 63 (237)
T ss_pred cEEEEEeEEEee------------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEE
Confidence 368999999987 345799999999999999999999999999999999999976 799999
Q ss_pred ECCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCC
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKEL-GLDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~ 171 (612)
++|+++.. ...++.++|++|++.+++.+||.||+.+..... ..++..++++++++.+ ++.+..++.+.
T Consensus 64 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~~--- 136 (237)
T PRK11614 64 FDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA----ERDQFQERIKWVYELFPRLHERRIQRAG--- 136 (237)
T ss_pred ECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc----ChhHHHHHHHHHHHHHHHHHHHHhCchh---
Confidence 99998643 124677999999999999999999998764221 1223345677888888 57776676665
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|+
T Consensus 137 ---~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~ 211 (237)
T PRK11614 137 ---TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNAN-QALKLADRGYVLE 211 (237)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHhhCCEEEEEe
Confidence 8999999999999999999999999999999999999999999999975 4899999999997 5899999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988763
No 98
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=357.33 Aligned_cols=209 Identities=34% Similarity=0.552 Sum_probs=183.3
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+||++++| +++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~~~~~~------------------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 59 (211)
T cd03264 1 LQLENLTKRY------------------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRID 59 (211)
T ss_pred CEEEEEEEEE------------------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEEC
Confidence 4788999887 3356999999999999 9999999999999999999999977 79999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|+++.. ...++.++|++|++.+++.+||+||+.+..... ...+++..++++++++.+||.+..++.++ +|
T Consensus 60 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~L 131 (211)
T cd03264 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVKARVDEVLELVNLGDRAKKKIG------SL 131 (211)
T ss_pred CCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHCCCHHHHhCchh------hC
Confidence 987642 345678999999999999999999998865432 11233445678999999999988888876 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++
T Consensus 132 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 132 SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLV 208 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999964 489999999998 478899999999999998
Q ss_pred Eec
Q 046991 257 HNG 259 (612)
Q Consensus 257 ~~G 259 (612)
..|
T Consensus 209 ~~g 211 (211)
T cd03264 209 FEG 211 (211)
T ss_pred ecC
Confidence 765
No 99
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=366.30 Aligned_cols=219 Identities=35% Similarity=0.524 Sum_probs=190.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~------------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~ 61 (258)
T PRK13548 2 MLEARNLSVRL------------------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRL 61 (258)
T ss_pred eEEEEeEEEEe------------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEE
Confidence 58899999888 345699999999999999999999999999999999999876 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
+|.++.. ..+++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+|+.+..++.++
T Consensus 62 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 133 (258)
T PRK13548 62 NGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GLSRAEDDALVAAALAQVDLAHLAGRDYP------ 133 (258)
T ss_pred CCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcc------
Confidence 9987642 345577999999998888899999998764321 11223345678899999999988888876
Q ss_pred ccChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 175 GISGGERRRASIGVDLV------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+++
T Consensus 134 ~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 212 (258)
T PRK13548 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIV 212 (258)
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEE
Confidence 89999999999999999 5999999999999999999999999999997456899999999998 4888999999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|+++..|+++++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 213 LLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999887653
No 100
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.5e-44 Score=357.00 Aligned_cols=208 Identities=28% Similarity=0.419 Sum_probs=181.5
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~~-----------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 61 (214)
T cd03292 1 IEFINVTKTYP-----------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVN 61 (214)
T ss_pred CEEEEEEEEeC-----------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEEC
Confidence 46789988872 225699999999999999999999999999999999999876 79999999
Q ss_pred CeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 99 DRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 99 g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+....+. ...++..++++++++.+|+++..++.++
T Consensus 62 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (214)
T cd03292 62 GQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG--VPPREIRKRVPAALELVGLSHKHRALPA---- 135 (214)
T ss_pred CEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCHHHhhCChh----
Confidence 998642 2356789999999999999999999988754321 2344556678999999999988888776
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++
T Consensus 136 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l~~ 211 (214)
T cd03292 136 --ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKE-LVDTTRHRVIALER 211 (214)
T ss_pred --hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 8999999999999999999999999999999999999999999999865 4889999999997 48889999999999
Q ss_pred CeE
Q 046991 253 GFV 255 (612)
Q Consensus 253 G~i 255 (612)
|++
T Consensus 212 G~~ 214 (214)
T cd03292 212 GKL 214 (214)
T ss_pred CcC
Confidence 974
No 101
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-44 Score=363.87 Aligned_cols=221 Identities=27% Similarity=0.383 Sum_probs=188.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+
T Consensus 4 ~l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~ 65 (253)
T PRK14267 4 AIETVNLRVYY------------------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE 65 (253)
T ss_pred eEEEEeEEEEe------------------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE
Confidence 68999999988 3356999999999999999999999999999999999998762 35899
Q ss_pred EEECCeeCC-----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMD-----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++. ...+++.++|++|++.+++.+||.||+.+....+....+.++..++++++++.+|+.+ ..++
T Consensus 66 i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14267 66 VRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLND 145 (253)
T ss_pred EEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhcc
Confidence 999999874 1345678999999999999999999998865432111123445567889999999853 3455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||
T Consensus 146 ~~~------~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d 216 (253)
T PRK14267 146 YPS------NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSD 216 (253)
T ss_pred Chh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCC
Confidence 554 8999999999999999999999999999999999999999999999863 589999999998 5889999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
++++|++|+++..|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987753
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-44 Score=362.10 Aligned_cols=217 Identities=29% Similarity=0.445 Sum_probs=189.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+|+|.+
T Consensus 2 ~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 61 (242)
T PRK11124 2 SIQLNGINCFY------------------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNI 61 (242)
T ss_pred EEEEEeeEEEE------------------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 58899999888 345699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCC---------hhhhcccEEEEecCCCcCCCCCHHHHHHHH-HHccCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046991 98 NDRPMD---------AEHFRRISGYVTQDDALFPLLTVEETLMCS-ALLRLTAGRRKQAASRVRGLLKELGLDHVASSRI 167 (612)
Q Consensus 98 ~g~~~~---------~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~-~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 167 (612)
+|+++. ....++.++|++|++.+++.+||+||+.+. .... ....++..+++.++++.+|+.+..++.+
T Consensus 62 ~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 139 (242)
T PRK11124 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLERLRLKPYADRFP 139 (242)
T ss_pred CCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 999762 123567899999999999999999999753 2221 1233445567899999999988888877
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||+++ ++.+++|++
T Consensus 140 ~------~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i 211 (242)
T PRK11124 140 L------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRV 211 (242)
T ss_pred h------hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEE
Confidence 6 8999999999999999999999999999999999999999999999964 5899999999998 478899999
Q ss_pred EEEcCCeEEEecChhhH
Q 046991 248 VLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~ 264 (612)
++|++|++++.|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987753
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-44 Score=368.20 Aligned_cols=220 Identities=25% Similarity=0.396 Sum_probs=192.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++.+. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 5 ~l~~~~l~~~~~----------------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~ 66 (279)
T PRK13635 5 IIRVEHISFRYP----------------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITV 66 (279)
T ss_pred eEEEEEEEEEeC----------------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEE
Confidence 589999999882 0235699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++ .+++..||.||+.+..... ....++..++++++++.+||.+..++.++
T Consensus 67 ~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 139 (279)
T PRK13635 67 GGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEMVERVDQALRQVGMEDFLNREPH----- 139 (279)
T ss_pred CCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC--CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----
Confidence 9998753 34567899999997 3677789999998865432 12345556789999999999988888886
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|++|
T Consensus 140 -~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G 216 (279)
T PRK13635 140 -RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKG 216 (279)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECC
Confidence 8999999999999999999999999999999999999999999999987668999999999974 65 59999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
++++.|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13635 217 EILEEGTPEEIF 228 (279)
T ss_pred EEEEECCHHHHh
Confidence 999999988764
No 104
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=367.83 Aligned_cols=225 Identities=25% Similarity=0.426 Sum_probs=194.1
Q ss_pred CCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee
Q 046991 14 KALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93 (612)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G 93 (612)
....+|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|
T Consensus 3 ~~~~~l~i~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G 62 (265)
T PRK10253 3 ESVARLRGEQLTLGY------------------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHG 62 (265)
T ss_pred ccccEEEEEEEEEEE------------------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCc
Confidence 356789999999988 345699999999999999999999999999999999999976 789
Q ss_pred EEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 94 KLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 94 ~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
+|.++|+++.. ...++.++|++|++.+++.+|++||+.+...-..+ ....+...++++++++.+||.+..++.+.
T Consensus 63 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (265)
T PRK10253 63 HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD 142 (265)
T ss_pred EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc
Confidence 99999998642 34556799999999999999999999864211100 01122345678899999999988888776
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+++
T Consensus 143 ------~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~ 215 (265)
T PRK10253 143 ------TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLI 215 (265)
T ss_pred ------cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 899999999999999999999999999999999999999999999997655899999999998 5899999999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++++.|+++++.
T Consensus 216 ~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 216 ALREGKIVAQGAPKEIV 232 (265)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999987753
No 105
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-44 Score=384.25 Aligned_cols=237 Identities=26% Similarity=0.355 Sum_probs=199.6
Q ss_pred eEEEeeeEEEEecccccc----cc--eecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCce
Q 046991 18 RLETKNLSYKLCSKFDEF----NW--VYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKV 91 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~----~~--~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~ 91 (612)
.|+++||++.+....... .. ....+.+.++...+|+|+||++++||+++|+||||||||||+|+|+|+++| .
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--T 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--C
Confidence 689999998884322111 00 011223445556799999999999999999999999999999999999977 7
Q ss_pred eeEEEECCeeCCh---hh----hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc
Q 046991 92 SGKLLVNDRPMDA---EH----FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS 164 (612)
Q Consensus 92 ~G~I~~~g~~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 164 (612)
+|+|.++|+++.. .. .++.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..+
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~--~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA--GINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 9999999998742 11 2457999999999999999999999876543 1234455678899999999998888
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.+. +||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++
T Consensus 160 ~~~~------~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~ 232 (400)
T PRK10070 160 SYPD------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIG 232 (400)
T ss_pred cCcc------cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhC
Confidence 8876 899999999999999999999999999999999999999999999997666899999999998 588999
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|+++..|+++++.
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CEEEEEECCEEEecCCHHHHH
Confidence 999999999999999987753
No 106
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-44 Score=364.24 Aligned_cols=229 Identities=28% Similarity=0.452 Sum_probs=195.1
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-C-ceeeEE
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS-S-R-KVSGKL 95 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~-~-~-~~~G~I 95 (612)
|+++||+.++.. ..+...+++||||++++||++||+|.|||||||+.++|.|+++ + . ..+|+|
T Consensus 2 L~v~nL~v~f~~--------------~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i 67 (316)
T COG0444 2 LEVKNLSVSFPT--------------DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67 (316)
T ss_pred ceEeeeEEEEec--------------CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE
Confidence 789999998842 1235679999999999999999999999999999999999997 3 2 468999
Q ss_pred EECCeeCC---hh---hh-cccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 046991 96 LVNDRPMD---AE---HF-RRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 96 ~~~g~~~~---~~---~~-~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
.++|+++. .+ ++ .+.|+|++|++ .|.|.+||.+.+.-..+.......+++..+++.++|+.+||.+....
T Consensus 68 ~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~- 146 (316)
T COG0444 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR- 146 (316)
T ss_pred EECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHH-
Confidence 99999753 22 22 36799999996 68999999999877655422111356678899999999999864221
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
. +.++++|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.++.|.++|++|||+.. +.++|||
T Consensus 147 ~--~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDr 223 (316)
T COG0444 147 L--KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADR 223 (316)
T ss_pred H--hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcce
Confidence 1 445679999999999999999999999999999999999999999999999998889999999999985 8999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
|.+|..|++|+.|+.+++.
T Consensus 224 i~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 224 VAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEEEECcEEEEeCCHHHHh
Confidence 9999999999999998763
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.9e-44 Score=356.22 Aligned_cols=208 Identities=31% Similarity=0.501 Sum_probs=181.5
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++++ +++.+|+++||++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (213)
T cd03262 1 IEIKNLHKSF------------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIID 60 (213)
T ss_pred CEEEEEEEEE------------------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEC
Confidence 4688999887 335699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 99 DRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 99 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+..... .....++..++++++++.+|+.+..++.+.
T Consensus 61 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 134 (213)
T cd03262 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV-KGMSKAEAEERALELLEKVGLADKADAYPA----- 134 (213)
T ss_pred CEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----
Confidence 998732 345678999999999999999999998764211 111334455678999999999988888776
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|
T Consensus 135 -~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 135 -QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred -ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 8999999999999999999999999999999999999999999999975 4889999999998 588999999999999
Q ss_pred eE
Q 046991 254 FV 255 (612)
Q Consensus 254 ~i 255 (612)
++
T Consensus 212 ~i 213 (213)
T cd03262 212 RI 213 (213)
T ss_pred cC
Confidence 74
No 108
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.3e-44 Score=357.15 Aligned_cols=212 Identities=32% Similarity=0.490 Sum_probs=181.0
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+.. +.+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 2 l~~~~v~~~~~~--------------~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~ 65 (221)
T TIGR02211 2 LKCENLGKRYQE--------------GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFN 65 (221)
T ss_pred EEEEeeeEEccC--------------CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEC
Confidence 688999988831 11225699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh---hh---hc-ccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 99 DRPMDA---EH---FR-RISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 99 g~~~~~---~~---~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
|+++.. .. ++ +.++|++|++.+++.+||+||+.+....+. ....+..+++.++++.+|+.+..++.++
T Consensus 66 g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (221)
T TIGR02211 66 GQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK--KSVKEAKERAYEMLEKVGLEHRINHRPS--- 140 (221)
T ss_pred CEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCChhhhhCChh---
Confidence 998642 11 23 579999999999999999999988654321 1233445678899999999988888776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++ +.+|++++|+
T Consensus 141 ---~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~ 215 (221)
T TIGR02211 141 ---ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMK 215 (221)
T ss_pred ---hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEe
Confidence 899999999999999999999999999999999999999999999997666899999999997 35 4589999999
Q ss_pred CCeEE
Q 046991 252 NGFVV 256 (612)
Q Consensus 252 ~G~iv 256 (612)
+|+++
T Consensus 216 ~G~i~ 220 (221)
T TIGR02211 216 DGQLF 220 (221)
T ss_pred CCEec
Confidence 99975
No 109
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.6e-44 Score=357.74 Aligned_cols=221 Identities=43% Similarity=0.685 Sum_probs=187.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS-RKVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~-~~~~G~I~ 96 (612)
.++++|+++.++.. ...+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+.+|+|.
T Consensus 3 ~~~~~~~~~~~~~~--------------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~ 68 (226)
T cd03234 3 VLPWWDVGLKAKNW--------------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL 68 (226)
T ss_pred cceeecceeeeecC--------------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE
Confidence 46799999988410 0247799999999999999999999999999999999999971 02799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHH-HHHHcCCcccccccccCCCCCC
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG-RRKQAASRVRG-LLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
++|+++.....++.++|++|++.+++.+||+||+.+......+.. ..+...+++++ .++.+++.+..++.++
T Consensus 69 ~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 142 (226)
T cd03234 69 FNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK------ 142 (226)
T ss_pred ECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc------
Confidence 999988655677889999999999999999999998754332211 22223344555 8999999888777775
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|+++.++.++||++++|++|+
T Consensus 143 ~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 143 GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 8999999999999999999999999999999999999999999999875 488999999998535899999999999999
Q ss_pred EEEec
Q 046991 255 VVHNG 259 (612)
Q Consensus 255 iv~~G 259 (612)
+++.|
T Consensus 222 i~~~g 226 (226)
T cd03234 222 IVYSG 226 (226)
T ss_pred EEecC
Confidence 98765
No 110
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-44 Score=355.47 Aligned_cols=210 Identities=30% Similarity=0.462 Sum_probs=180.7
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++++ +++. .|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~l~~~~------------------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~ 58 (211)
T cd03298 1 VRLDKIRFSY------------------GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLIN 58 (211)
T ss_pred CEEEeEEEEe------------------CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEC
Confidence 4688998887 2222 299999999999999999999999999999999976 79999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+....... ..++.+++++++++.+||.+..++.+. +||
T Consensus 59 g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS 130 (211)
T cd03298 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK--LTAEDRQAIEVALARVGLAGLEKRLPG------ELS 130 (211)
T ss_pred CEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--ccHHHHHHHHHHHHHcCCHHHHhCCcc------cCC
Confidence 998743 22356799999999999999999999875432111 123345678999999999988888776 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+++.
T Consensus 131 ~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEee
Confidence 999999999999999999999999999999999999999999997666899999999998 4889999999999999986
Q ss_pred ec
Q 046991 258 NG 259 (612)
Q Consensus 258 ~G 259 (612)
.|
T Consensus 210 ~~ 211 (211)
T cd03298 210 QG 211 (211)
T ss_pred cC
Confidence 54
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.1e-44 Score=361.00 Aligned_cols=218 Identities=28% Similarity=0.427 Sum_probs=188.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~i~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~ 61 (242)
T TIGR03411 2 ILYLEGLSVSF------------------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLF 61 (242)
T ss_pred eEEEEeeEEEc------------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEE
Confidence 47899999887 335699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh---h-hhcccEEEEecCCCcCCCCCHHHHHHHHHHccC------CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046991 98 NDRPMDA---E-HFRRISGYVTQDDALFPLLTVEETLMCSALLRL------TAGRRKQAASRVRGLLKELGLDHVASSRI 167 (612)
Q Consensus 98 ~g~~~~~---~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 167 (612)
+|+++.. . ..++.++|++|++.+++.+||+||+.+...... .....++..++++++++.+|+.+..++.+
T Consensus 62 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (242)
T TIGR03411 62 GGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA 141 (242)
T ss_pred CCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 9987642 2 234579999999999999999999988643210 00112345567899999999998888877
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
+ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++
T Consensus 142 ~------~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i 212 (242)
T TIGR03411 142 G------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKV 212 (242)
T ss_pred h------hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEE
Confidence 6 8999999999999999999999999999999999999999999999864 689999999998 588999999
Q ss_pred EEEcCCeEEEecChhhH
Q 046991 248 VLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~ 264 (612)
++|++|+++..|+++++
T Consensus 213 ~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 213 TVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EEEECCeEEeeCCHHHH
Confidence 99999999999988765
No 112
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.9e-42 Score=417.52 Aligned_cols=224 Identities=31% Similarity=0.437 Sum_probs=199.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||++.+. .+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.
T Consensus 927 ~~L~I~nLsK~y~----------------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~ 988 (2272)
T TIGR01257 927 PGVCVKNLVKIFE----------------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVL 988 (2272)
T ss_pred ceEEEEeEEEEec----------------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEE
Confidence 4689999998882 1246799999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 97 VNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 97 ~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
++|+++.. ...++.+||++|++.+++.+||+||+.+.++++. .+.++.+++++++++.+||.+..++.++
T Consensus 989 i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg--~~~~~~~~~v~~lL~~vgL~~~~~~~~~------ 1060 (2272)
T TIGR01257 989 VGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG--RSWEEAQLEMEAMLEDTGLHHKRNEEAQ------ 1060 (2272)
T ss_pred ECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCchhhcCChh------
Confidence 99998753 3467789999999999999999999999876542 2344556789999999999998888887
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+|||||||||+||+||+.+|++++|||||+|||+.++..+.++|++++ + |+|||++||+++ ++..++||+++|++|+
T Consensus 1061 ~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd-ea~~laDrI~iL~~Gk 1137 (2272)
T TIGR01257 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD-EADLLGDRIAIISQGR 1137 (2272)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999984 3 899999999998 5889999999999999
Q ss_pred EEEecChhhHHHHHH
Q 046991 255 VVHNGTLNHLEERLK 269 (612)
Q Consensus 255 iv~~G~~~~~~~~f~ 269 (612)
++..|+++++.+.+.
T Consensus 1138 L~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1138 LYCSGTPLFLKNCFG 1152 (2272)
T ss_pred EEEecCHHHHHHhcC
Confidence 999999998876654
No 113
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-44 Score=362.61 Aligned_cols=220 Identities=26% Similarity=0.363 Sum_probs=187.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceee
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G 93 (612)
..|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|
T Consensus 6 ~~l~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 67 (254)
T PRK14273 6 AIIETENLNLFY------------------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEG 67 (254)
T ss_pred ceEEEeeeEEEe------------------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCce
Confidence 379999999988 3356999999999999999999999999999999999999762 2589
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cccc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVAS 164 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~ 164 (612)
+|.++|+++.. ...++.++|++|++.+++ +||+||+.+...... ....++..++++++++.+++. +..+
T Consensus 68 ~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 68 NVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG-TKDKKKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred EEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHh
Confidence 99999988631 345678999999998885 899999988653321 112334556788999999983 4456
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.++ .||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ + ++|||++||+++ ++.+++
T Consensus 146 ~~~~------~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~ 216 (254)
T PRK14273 146 TNAL------SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRIS 216 (254)
T ss_pred CCcc------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhC
Confidence 6654 899999999999999999999999999999999999999999999995 3 689999999998 488999
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|+++..|+++++.
T Consensus 217 d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 217 DRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999987753
No 114
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-44 Score=366.05 Aligned_cols=218 Identities=25% Similarity=0.402 Sum_probs=188.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~~------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 60 (271)
T PRK13638 1 MLATSDLWFRY------------------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLW 60 (271)
T ss_pred CeEEEEEEEEc------------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEE
Confidence 47899999887 345699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-----hhhcccEEEEecCCCc-CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA-----EHFRRISGYVTQDDAL-FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~-----~~~~~~i~yv~Q~~~l-~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ...++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+|+.+..++.++
T Consensus 61 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 135 (271)
T PRK13638 61 QGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQHFRHQPIQ--- 135 (271)
T ss_pred CCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHhHhcCCch---
Confidence 9998631 2456789999999753 34568999998764322 12344455678899999999988888776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|+
T Consensus 136 ---~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~-~~~~~~d~i~~l~ 210 (271)
T PRK13638 136 ---CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDID-LIYEISDAVYVLR 210 (271)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999975 4889999999998 4889999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|+++++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988753
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-44 Score=367.27 Aligned_cols=220 Identities=28% Similarity=0.469 Sum_probs=191.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++++++ +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 3 ~l~~~~l~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~ 63 (277)
T PRK13652 3 LIETRDLCYSYS-----------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLI 63 (277)
T ss_pred eEEEEEEEEEeC-----------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE
Confidence 588999999882 234599999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++. .+...||.||+.+..... ....++..++++++++.+||.+..++.+.
T Consensus 64 ~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 136 (277)
T PRK13652 64 RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--GLDEETVAHRVSSALHMLGLEELRDRVPH----- 136 (277)
T ss_pred CCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----
Confidence 9998642 345678999999974 334579999998765321 12344556678999999999988888876
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.||++++|++|
T Consensus 137 -~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G 214 (277)
T PRK13652 137 -HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKG 214 (277)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999997655899999999998 588999999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998864
No 116
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-44 Score=366.45 Aligned_cols=221 Identities=27% Similarity=0.440 Sum_probs=191.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 10 ~~l~i~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 69 (265)
T PRK10575 10 TTFALRNVSFRV------------------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEIL 69 (265)
T ss_pred ceEEEeeEEEEE------------------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEE
Confidence 369999999888 345799999999999999999999999999999999999976 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
++|+++. ...+++.++|++|++.+++.+|+.||+.+....... .....+..++++++++.+|+.+..++.++
T Consensus 70 ~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 146 (265)
T PRK10575 70 LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD--- 146 (265)
T ss_pred ECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc---
Confidence 9998763 234567899999998888999999999875321100 01122345678999999999888888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.||++++|+
T Consensus 147 ---~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~ 222 (265)
T PRK10575 147 ---SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR 222 (265)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999997655899999999998 5889999999999
Q ss_pred CCeEEEecChhhH
Q 046991 252 NGFVVHNGTLNHL 264 (612)
Q Consensus 252 ~G~iv~~G~~~~~ 264 (612)
+|+++..|+.+++
T Consensus 223 ~G~i~~~~~~~~~ 235 (265)
T PRK10575 223 GGEMIAQGTPAEL 235 (265)
T ss_pred CCeEEEecCHHHh
Confidence 9999999988765
No 117
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-44 Score=363.10 Aligned_cols=219 Identities=24% Similarity=0.375 Sum_probs=187.6
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cee
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVS 92 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~ 92 (612)
...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+
T Consensus 10 ~~~l~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~ 71 (258)
T PRK14268 10 QPQIKVENLNLWY------------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIE 71 (258)
T ss_pred ceeEEEeeeEEEe------------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcc
Confidence 3379999999887 3456999999999999999999999999999999999998642 369
Q ss_pred eEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccc
Q 046991 93 GKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVA 163 (612)
Q Consensus 93 G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 163 (612)
|+|.++|+++.. ..+++.++|++|++.+++ +|++||+.+..... ..+.++..++++++++.+|+. +..
T Consensus 72 G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK14268 72 GKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH--GANKKDLDGVVENALRSAALWDETSDRL 148 (258)
T ss_pred eEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcchhhhh
Confidence 999999988632 235678999999998888 89999999875432 123444456788999999984 345
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++
T Consensus 149 ~~~~~------~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~-~~~~~ 219 (258)
T PRK14268 149 KSPAL------SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQ-QAARI 219 (258)
T ss_pred cCChh------hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHH-HHHHh
Confidence 66654 899999999999999999999999999999999999999999999985 3 689999999998 48899
Q ss_pred cCeEEEEcCCeEEEecChhhH
Q 046991 244 FDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 244 ~D~v~lL~~G~iv~~G~~~~~ 264 (612)
||++++|++|++++.|+++++
T Consensus 220 ~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 220 SDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999998765
No 118
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-44 Score=374.31 Aligned_cols=231 Identities=23% Similarity=0.293 Sum_probs=195.2
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||++.|..+... ....+...+|+|||++|++||++||+|+||||||||+++|+|++++ .+|+|.
T Consensus 4 ~~l~v~nl~~~~~~~~~~--------~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~ 73 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL--------FKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELY 73 (327)
T ss_pred ceEEEeeeEEEEcCCCCc--------cccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEE
Confidence 368999999998421100 0011235799999999999999999999999999999999999976 689999
Q ss_pred ECCeeCCh------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 97 VNDRPMDA------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 97 ~~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
++|+++.. ..+++.++||+|++ .+.|.+|+.+++........ ...+++..+++.++++.+||. +..++.+
T Consensus 74 ~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~p 152 (327)
T PRK11308 74 YQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-SLSAAERREKALAMMAKVGLRPEHYDRYP 152 (327)
T ss_pred ECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHCCCChHHhcCCC
Confidence 99998742 23567899999998 58899999999987654321 123556667899999999996 3567766
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
. +||||||||++||+||+.+|++|++||||+|||..++.+++++|+++.++.|.|+|++|||++ .+.++||++
T Consensus 153 ~------~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv 225 (327)
T PRK11308 153 H------MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEV 225 (327)
T ss_pred c------cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 5 899999999999999999999999999999999999999999999998767999999999998 488899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
No 119
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=365.25 Aligned_cols=222 Identities=29% Similarity=0.463 Sum_probs=191.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~ 96 (612)
.|+++||++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ..+|+|.
T Consensus 4 ~l~~~nl~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~ 65 (262)
T PRK09984 4 IIRVEKLAKTF------------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE 65 (262)
T ss_pred EEEEeeEEEEe------------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEE
Confidence 68999999888 3467999999999999999999999999999999999999763 2469999
Q ss_pred ECCeeCCh--------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCccc
Q 046991 97 VNDRPMDA--------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT------AGRRKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 97 ~~g~~~~~--------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~------~~~~~~~~~~v~~~l~~lgL~~~ 162 (612)
++|+++.. ...++.++|++|++.+++.+||+||+.+......+ ....++.+++++++++.+|+.+.
T Consensus 66 ~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 145 (262)
T PRK09984 66 LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF 145 (262)
T ss_pred ECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 99987632 23456799999999999999999999875321100 00123345678999999999988
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+
T Consensus 146 ~~~~~~------~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~ 218 (262)
T PRK09984 146 AHQRVS------TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALR 218 (262)
T ss_pred HhCCcc------ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 888876 899999999999999999999999999999999999999999999998656899999999998 4889
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||++++|++|++++.|+++++
T Consensus 219 ~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 219 YCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred hCCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999988764
No 120
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-44 Score=374.15 Aligned_cols=226 Identities=23% Similarity=0.364 Sum_probs=191.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR--KVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I 95 (612)
.|+++||++.|.. +.+...+|+||||++++||++||+|+||||||||+++|+|++++. +.+|+|
T Consensus 3 ~L~v~~l~~~~~~--------------~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i 68 (326)
T PRK11022 3 LLNVDKLSVHFGD--------------ESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL 68 (326)
T ss_pred eEEEeCeEEEECC--------------CCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE
Confidence 5899999999831 112256999999999999999999999999999999999998642 368999
Q ss_pred EECCeeCCh---hh----hcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc---cc
Q 046991 96 LVNDRPMDA---EH----FRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH---VA 163 (612)
Q Consensus 96 ~~~g~~~~~---~~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~---~~ 163 (612)
.++|+++.. +. .++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..
T Consensus 69 ~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~l 147 (326)
T PRK11022 69 EFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ-GGNKKTRRQRAIDLLNQVGIPDPASRL 147 (326)
T ss_pred EECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHCCCCChHHHH
Confidence 999998742 22 224799999998 57899999998876543321 1245566788999999999974 34
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
++.++ +|||||||||+||+||+.+|++|++||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.++
T Consensus 148 ~~~p~------~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~ 220 (326)
T PRK11022 148 DVYPH------QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEA 220 (326)
T ss_pred hCCch------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHh
Confidence 55554 899999999999999999999999999999999999999999999998767899999999998 48889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 046991 244 FDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 244 ~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+|++++|++|++++.|+++++.
T Consensus 221 adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999988764
No 121
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-43 Score=374.00 Aligned_cols=232 Identities=24% Similarity=0.376 Sum_probs=193.7
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceee
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSG 93 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G 93 (612)
....|+++||++.+.. +.+...+|+||||++++||+++|+|+||||||||+++|+|+.++. ..+|
T Consensus 9 ~~~~L~i~~l~~~~~~--------------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG 74 (330)
T PRK09473 9 ADALLDVKDLRVTFST--------------PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74 (330)
T ss_pred CCceEEEeCeEEEEec--------------CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCe
Confidence 3457999999998831 113356999999999999999999999999999999999999762 1389
Q ss_pred EEEECCeeCCh---hh---hc-ccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc
Q 046991 94 KLLVNDRPMDA---EH---FR-RISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS 164 (612)
Q Consensus 94 ~I~~~g~~~~~---~~---~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 164 (612)
+|.++|+++.. ++ +| +.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+
T Consensus 75 ~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~L~~vgL~~~~~ 153 (330)
T PRK09473 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAFEESVRMLDAVKMPEARK 153 (330)
T ss_pred EEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCChHH
Confidence 99999998742 22 23 5799999998 68899999999987654321 1245566678999999999975322
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
. . +..+++|||||||||+||+||+.+|++|++||||+|||+.++..++++|++++++.|.|+|++|||++ .+.+++
T Consensus 154 ~-~--~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~ 229 (330)
T PRK09473 154 R-M--KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGIC 229 (330)
T ss_pred H-h--cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhC
Confidence 1 1 23345999999999999999999999999999999999999999999999998767899999999998 478899
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|++++.|+++++.
T Consensus 230 Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 230 DKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988764
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-44 Score=368.81 Aligned_cols=222 Identities=24% Similarity=0.366 Sum_probs=189.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~i~~~~l~~~~~~~-------------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~ 66 (287)
T PRK13641 2 SIKFENVDYIYSPG-------------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITI 66 (287)
T ss_pred EEEEEEEEEEcCCC-------------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 57899999988210 00125699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA-------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ...++.++|++|++ .++ .+||+||+.+..... ....++..++++++++.+||. +..++.+
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (287)
T PRK13641 67 AGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF--GFSEDEAKEKALKWLKKVGLSEDLISKSP 143 (287)
T ss_pred CCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhhCCc
Confidence 9998632 23566899999997 345 579999998765432 123455567889999999997 6778877
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
+ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++
T Consensus 144 ~------~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~-~~~~~~d~v 215 (287)
T PRK13641 144 F------ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMD-DVAEYADDV 215 (287)
T ss_pred c------cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEE
Confidence 6 8999999999999999999999999999999999999999999999965 5899999999998 488999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 123
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.9e-44 Score=381.97 Aligned_cols=236 Identities=25% Similarity=0.362 Sum_probs=199.2
Q ss_pred EEEeeeEEEEecccccccce------ecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcee
Q 046991 19 LETKNLSYKLCSKFDEFNWV------YCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVS 92 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~------~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~ 92 (612)
|+++||.+-+-..+...-.+ ...+.++++...+|+|+||++++||+++|+||||||||||+++|+|+++| .+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~ 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SR 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CC
Confidence 47889988774322221000 11233556778899999999999999999999999999999999999977 79
Q ss_pred eEEEECCe----eCC---hh---hh-cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc
Q 046991 93 GKLLVNDR----PMD---AE---HF-RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH 161 (612)
Q Consensus 93 G~I~~~g~----~~~---~~---~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~ 161 (612)
|+|+++|+ ++. .. +. ++.++||+|++.+++.+||+||+.++.... +.++.+.+++++++++.+||++
T Consensus 79 G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~--g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 79 GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ--GMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCch
Confidence 99999996 322 11 22 257999999999999999999999886432 2245566678999999999998
Q ss_pred cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH
Q 046991 162 VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL 241 (612)
Q Consensus 162 ~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 241 (612)
..++.++ +||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.
T Consensus 157 ~~~~~~~------~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~ 229 (382)
T TIGR03415 157 WADKKPG------ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EAL 229 (382)
T ss_pred hhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 8888886 899999999999999999999999999999999999999999999998766899999999998 588
Q ss_pred hccCeEEEEcCCeEEEecChhhHH
Q 046991 242 ELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 242 ~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++++|++|+++..|+++++.
T Consensus 230 ~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 230 KIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998763
No 124
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=366.45 Aligned_cols=225 Identities=28% Similarity=0.375 Sum_probs=191.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++|++++++.. .+..++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.
T Consensus 3 ~~l~~~~l~~~~~~~------------~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 68 (280)
T PRK13633 3 EMIKCKNVSYKYESN------------EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVY 68 (280)
T ss_pred ceEEEeeeEEEcCCC------------CCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEE
Confidence 368999999998311 011245799999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh----hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
++|+++.. ...++.++|++|++. .+...||.|++.|..... ..++++..++++++++.+||.+..++.++
T Consensus 69 i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 143 (280)
T PRK13633 69 VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL--GIPPEEIRERVDESLKKVGMYEYRRHAPH--- 143 (280)
T ss_pred ECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc--CCCHHHHHHHHHHHHHHCCCHhHhhCCcc---
Confidence 99998742 345678999999974 233469999998875422 12345556788999999999988888886
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. ||++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEE
Confidence 8999999999999999999999999999999999999999999999976568999999999984 654 99999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|+++..|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998864
No 125
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.8e-44 Score=355.66 Aligned_cols=210 Identities=29% Similarity=0.435 Sum_probs=183.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 61 (222)
T PRK10908 1 MIRFEHVSKAYL-----------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWF 61 (222)
T ss_pred CEEEEeeEEEec-----------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 378999998872 235699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh---h---hhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA---E---HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~---~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. . .+++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+|+.+..++.+.
T Consensus 62 ~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (222)
T PRK10908 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA--GASGDDIRRRVSAALDKVGLLDKAKNFPI--- 136 (222)
T ss_pred CCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCCch---
Confidence 9987642 1 24678999999999888999999998865432 12344455678899999999887787776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++||+++ ++.+.+|++++|+
T Consensus 137 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~ 211 (222)
T PRK10908 137 ---QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIG-LISRRSYRMLTLS 211 (222)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999975 4789999999998 4888999999999
Q ss_pred CCeEE
Q 046991 252 NGFVV 256 (612)
Q Consensus 252 ~G~iv 256 (612)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99975
No 126
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-44 Score=363.66 Aligned_cols=219 Identities=32% Similarity=0.506 Sum_probs=189.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 2 ~l~~~~l~~~~------------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 61 (255)
T PRK11231 2 TLRTENLTVGY------------------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFL 61 (255)
T ss_pred EEEEEeEEEEE------------------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEE
Confidence 58899999887 346799999999999999999999999999999999999876 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALL--RLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++. ...+++.++|++|++.+++.+|+.||+.++... ......+++..++++++++.+|+.+..++.++
T Consensus 62 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (255)
T PRK11231 62 GDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT---- 137 (255)
T ss_pred CCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc----
Confidence 998763 234566799999999988899999999875211 11111123345678899999999988888876
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++
T Consensus 138 --~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 213 (255)
T PRK11231 138 --DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLAN 213 (255)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999875 4899999999998 58899999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|+++..|+.+++
T Consensus 214 G~i~~~~~~~~~ 225 (255)
T PRK11231 214 GHVMAQGTPEEV 225 (255)
T ss_pred CeEEEEcCHHHh
Confidence 999999988765
No 127
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.1e-44 Score=359.56 Aligned_cols=214 Identities=30% Similarity=0.456 Sum_probs=184.8
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++||++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (230)
T TIGR03410 1 LEVSNLNVYY------------------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLD 60 (230)
T ss_pred CEEEeEEEEe------------------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEEC
Confidence 4688998887 345799999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh---h-hhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCC
Q 046991 99 DRPMDA---E-HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG-LDHVASSRIGGGSSN 173 (612)
Q Consensus 99 g~~~~~---~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~ 173 (612)
|+++.. . ..++.++|++|++.+++.+|++||+.+...... .. ..+.++++++.++ +.+..++.+.
T Consensus 61 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~---~~~~~~~~l~~~~~l~~~~~~~~~----- 130 (230)
T TIGR03410 61 GEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP--RR---SRKIPDEIYELFPVLKEMLGRRGG----- 130 (230)
T ss_pred CEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC--cc---hHHHHHHHHHHHHhHHHHhhCChh-----
Confidence 988642 2 235679999999999999999999987654321 11 2234577788886 5666777775
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|
T Consensus 131 -~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 131 -DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERG 208 (230)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999997655899999999998 588899999999999
Q ss_pred eEEEecChhhH
Q 046991 254 FVVHNGTLNHL 264 (612)
Q Consensus 254 ~iv~~G~~~~~ 264 (612)
+++..|+.+++
T Consensus 209 ~i~~~~~~~~~ 219 (230)
T TIGR03410 209 RVVASGAGDEL 219 (230)
T ss_pred EEEEECCHHHc
Confidence 99999998876
No 128
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.7e-44 Score=354.32 Aligned_cols=194 Identities=35% Similarity=0.544 Sum_probs=170.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCC-cCCCC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDA-LFPLL 124 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~l 124 (612)
+.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.. ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 5799999999999999999999999999999999999976 79999999987642 345678999999975 36678
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 125 TVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
|++||+.+..... ....++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL--GLPEEEIEERVEEALELVGLEGLRDRSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCcHhhhcCCcc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765322 11234445678899999999888888776 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 205 GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999764 899999999998 5888999999999885
No 129
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.1e-43 Score=364.15 Aligned_cols=229 Identities=24% Similarity=0.334 Sum_probs=190.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||++.+..... ....+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~~~~~~---------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 70 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL---------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSF 70 (265)
T ss_pred eEEEEeEEEEeccCcc---------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 4889999998831100 0001246799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---h---hhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-cccccccc
Q 046991 98 NDRPMDA---E---HFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIG 168 (612)
Q Consensus 98 ~g~~~~~---~---~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 168 (612)
+|+++.. . .+++.++|++|++ .+++.+||+||+.+..... .....++..+++.++++.+|+. +..++.++
T Consensus 71 ~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 149 (265)
T TIGR02769 71 RGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-TSLDESEQKARIAELLDMVGLRSEDADKLPR 149 (265)
T ss_pred CCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 9998742 1 2456799999996 4677899999998754321 1112334556789999999996 66777776
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|+++
T Consensus 150 ------~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~ 222 (265)
T TIGR02769 150 ------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVA 222 (265)
T ss_pred ------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEE
Confidence 899999999999999999999999999999999999999999999998656899999999998 4888999999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++++.|+++++.
T Consensus 223 ~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 223 VMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEeCCEEEEECCHHHHc
Confidence 99999999999987753
No 130
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=364.95 Aligned_cols=223 Identities=24% Similarity=0.386 Sum_probs=192.3
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+..+++++|+++.++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+
T Consensus 4 ~~~~l~~~nl~~~~~----------------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~ 65 (271)
T PRK13632 4 KSVMIKVENVSFSYP----------------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGE 65 (271)
T ss_pred cceEEEEEeEEEEcC----------------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCce
Confidence 345799999998872 1245799999999999999999999999999999999999977 7999
Q ss_pred EEECCeeCCh---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 95 LLVNDRPMDA---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 95 I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
|.++|+++.. ..+++.++|++|++. .++.+||+||+.+..... ....++..++++++++.+||.+..++.+.
T Consensus 66 I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 141 (271)
T PRK13632 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-- 141 (271)
T ss_pred EEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCCcc--
Confidence 9999998742 346778999999974 677789999998865322 12344455678999999999988888876
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.++|||++||+++. + ..||++++|
T Consensus 142 ----~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l 215 (271)
T PRK13632 142 ----NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVF 215 (271)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEE
Confidence 8999999999999999999999999999999999999999999999976546899999999974 5 479999999
Q ss_pred cCCeEEEecChhhHH
Q 046991 251 SNGFVVHNGTLNHLE 265 (612)
Q Consensus 251 ~~G~iv~~G~~~~~~ 265 (612)
++|+++..|+++++.
T Consensus 216 ~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 216 SEGKLIAQGKPKEIL 230 (271)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999987753
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=365.83 Aligned_cols=217 Identities=28% Similarity=0.386 Sum_probs=188.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 61 (274)
T PRK13644 1 MIRLENVSYSYP-----------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLV 61 (274)
T ss_pred CEEEEEEEEEcC-----------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEE
Confidence 478999998872 234699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh----hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMDA----EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~----~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|.++.. ...++.++|++|++. .+...|++||+.+..... ..+.++..++++++++.+||.+..++.++
T Consensus 62 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 135 (274)
T PRK13644 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL--CLPPIEIRKRVDRALAEIGLEKYRHRSPK---- 135 (274)
T ss_pred CCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHHHhcCCcc----
Confidence 9998742 345678999999975 366689999998765322 12345556778999999999988888776
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ ..||++++|++
T Consensus 136 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~ 210 (274)
T PRK13644 136 --TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDR 210 (274)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999975 5899999999998 46 57999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 211 G~i~~~g~~~~~ 222 (274)
T PRK13644 211 GKIVLEGEPENV 222 (274)
T ss_pred CEEEEECCHHHH
Confidence 999999998875
No 132
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=362.69 Aligned_cols=231 Identities=28% Similarity=0.412 Sum_probs=195.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.+. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 7 ~l~i~~l~~~~~----------------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~ 68 (269)
T PRK13648 7 IIVFKNVSFQYQ----------------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFY 68 (269)
T ss_pred eEEEEEEEEEcC----------------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE
Confidence 689999999882 0124599999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++.++
T Consensus 69 ~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 141 (269)
T PRK13648 69 NNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--AVPYDEMHRRVSEALKQVDMLERADYEPN----- 141 (269)
T ss_pred CCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----
Confidence 9998742 356778999999984 677789999998864322 12344556678899999999988888775
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.. +|++++|++|
T Consensus 142 -~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G 218 (269)
T PRK13648 142 -ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKG 218 (269)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECC
Confidence 899999999999999999999999999999999999999999999997655899999999998 4664 9999999999
Q ss_pred eEEEecChhhHH---HHHHhCCCCCC
Q 046991 254 FVVHNGTLNHLE---ERLKSAGHCIP 276 (612)
Q Consensus 254 ~iv~~G~~~~~~---~~f~~~g~~~p 276 (612)
++++.|+++++. ..+...+.++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 999999988763 23344454444
No 133
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-43 Score=359.00 Aligned_cols=222 Identities=26% Similarity=0.329 Sum_probs=184.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++||++++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+..+.+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 62 (243)
T TIGR01978 1 LKIKDLHVSV------------------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK 62 (243)
T ss_pred CeEeeEEEEE------------------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEEC
Confidence 4788999887 3456999999999999999999999999999999999995211379999999
Q ss_pred CeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--C---CCHHHHHHHHHHHHHHcCCc-cccccccc
Q 046991 99 DRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLT--A---GRRKQAASRVRGLLKELGLD-HVASSRIG 168 (612)
Q Consensus 99 g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~---~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 168 (612)
|+++.. .. .+..++|++|++.+++.+|++|++.+....... . ...++..++++++++.+||. +..++.++
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 63 GQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 998642 22 234589999999999999999999876432110 0 12233456789999999997 45666664
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc-cCeE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL-FDRL 247 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~D~v 247 (612)
.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+. ||++
T Consensus 143 -----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i 215 (243)
T TIGR01978 143 -----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYV 215 (243)
T ss_pred -----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeE
Confidence 14999999999999999999999999999999999999999999999975 5789999999998 47777 8999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 999999999999987544
No 134
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.4e-44 Score=355.93 Aligned_cols=200 Identities=35% Similarity=0.596 Sum_probs=170.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcC--CCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALF--PLL 124 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~l 124 (612)
+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++. ..++.++|++|++.+. ..+
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCC
Confidence 345699999999999999999999999999999999999976 7999999998764 4567899999998763 347
Q ss_pred CHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 125 TVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
||+||+.+....... ....++..++++++++.+|+.+..++.++ +||||||||++||++|+.+|++|+||||
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG------ELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999875432110 01123345678999999999988888776 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
|+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++| +++.|
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999976 5889999999998 588999999999876 55554
No 135
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-44 Score=341.04 Aligned_cols=219 Identities=30% Similarity=0.491 Sum_probs=191.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+.+||||++ .+|.+|+++|++++|||++||+||||||||||||.|+|...| .+|++.+
T Consensus 1 mi~a~nls~~~------------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~ 60 (259)
T COG4559 1 MIRAENLSYSL------------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTL 60 (259)
T ss_pred CeeeeeeEEEe------------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEee
Confidence 47899999998 568899999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
||.+++. .++.+.-+.+||+..+-...||+|.+.++..-...+....+..+.++++|+..++.+.+.+...
T Consensus 61 ~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~------ 134 (259)
T COG4559 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR------ 134 (259)
T ss_pred CCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchh------
Confidence 9998753 5666778999999888666799999998743211111223555668899999999999888775
Q ss_pred ccChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 175 GISGGERRRASIGVDLVH------DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.|||||||||.+||.|++ ++++||||||||.||...+..++++.++++++ |..|+++.||.+. ...+||||+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheee
Confidence 899999999999999986 45699999999999999999999999999976 6799999999996 789999999
Q ss_pred EEcCCeEEEecChhhH
Q 046991 249 LLSNGFVVHNGTLNHL 264 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~ 264 (612)
+|++||++..|+++++
T Consensus 213 ll~~Grv~a~g~p~~v 228 (259)
T COG4559 213 LLHQGRVIASGSPQDV 228 (259)
T ss_pred eeeCCeEeecCCHHHh
Confidence 9999999999999986
No 136
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=356.81 Aligned_cols=217 Identities=25% Similarity=0.416 Sum_probs=187.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||++++. ++. .|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~~------------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 58 (232)
T PRK10771 1 MLKLTDITWLYH------------------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTL 58 (232)
T ss_pred CeEEEEEEEEEC------------------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEE
Confidence 378999999882 222 389999999999999999999999999999999976 7899999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.++|++|++.+++.+|+.||+.+...... ...+...++++++++.+||++..++.+. .|
T Consensus 59 ~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~L 130 (232)
T PRK10771 59 NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLNAAQREKLHAIARQMGIEDLLARLPG------QL 130 (232)
T ss_pred CCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CCCHHHHHHHHHHHHHcCcHHHHhCCcc------cC
Confidence 9998643 2234679999999999999999999987532111 1122345678999999999988888886 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 131 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIA 209 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997656899999999998 588999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
+.|+.+++.
T Consensus 210 ~~g~~~~~~ 218 (232)
T PRK10771 210 WDGPTDELL 218 (232)
T ss_pred EeCCHHHHH
Confidence 999887653
No 137
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=363.04 Aligned_cols=219 Identities=31% Similarity=0.494 Sum_probs=189.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+. +.+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 1 ~l~~~~l~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~ 61 (275)
T PRK13639 1 ILETRDLKYSYP-----------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLI 61 (275)
T ss_pred CEEEEEEEEEeC-----------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEE
Confidence 378999999882 234699999999999999999999999999999999999976 6999999
Q ss_pred CCeeCCh-----hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA-----EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~-----~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ...++.++|++|++. .+...||+||+.+..... ....++..+++.++++.+||.+..++.++
T Consensus 62 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 136 (275)
T PRK13639 62 KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL--GLSKEEVEKRVKEALKAVGMEGFENKPPH--- 136 (275)
T ss_pred CCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchhhcCChh---
Confidence 9998731 235678999999963 333469999998764321 12344556778999999999988888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~-~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVD-LVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999754 899999999998 4888999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|+++..|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998863
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=362.41 Aligned_cols=222 Identities=25% Similarity=0.363 Sum_probs=188.3
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~ 91 (612)
....|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.
T Consensus 16 ~~~~l~~~nl~~~~------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 77 (267)
T PRK14235 16 TEIKMRARDVSVFY------------------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77 (267)
T ss_pred CCceEEEEeEEEEE------------------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC
Confidence 45589999999988 3456999999999999999999999999999999999998641 37
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----c
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----V 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~ 162 (612)
+|+|+++|+++.. ..+++.++|++|++.+++. ||.||+.+....+....+..+..++++++++.+|+.+ .
T Consensus 78 ~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 78 TGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred ceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH
Confidence 8999999998742 2456789999999988885 9999999875432111123344567899999999964 3
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+
T Consensus 157 ~~~~~~------~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~-~~~~ 227 (267)
T PRK14235 157 LHEPGT------GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQ-QAAR 227 (267)
T ss_pred hhCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHH-HHHh
Confidence 345554 8999999999999999999999999999999999999999999999863 689999999998 4889
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||++++|++|+++..|+++++
T Consensus 228 ~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 228 VSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999988765
No 139
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=364.07 Aligned_cols=221 Identities=27% Similarity=0.384 Sum_probs=187.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++++... +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~~~~-------------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~ 66 (280)
T PRK13649 2 GINLQNVSYTYQAG-------------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRV 66 (280)
T ss_pred eEEEEEEEEEcCCC-------------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 48899999988310 00124699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh-------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA-------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~-------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ..+++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||. ...++.+
T Consensus 67 ~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (280)
T PRK13649 67 DDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF--GVSQEEAEALAREKLALVGISESLFEKNP 143 (280)
T ss_pred CCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 9998642 34567899999996 4555 69999998765322 113445556788999999997 4567776
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
+ +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++
T Consensus 144 ~------~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~~~d~i 215 (280)
T PRK13649 144 F------ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMD-DVANYADFV 215 (280)
T ss_pred c------cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhCCEE
Confidence 5 8999999999999999999999999999999999999999999999975 4899999999997 588899999
Q ss_pred EEEcCCeEEEecChhhH
Q 046991 248 VLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~ 264 (612)
++|++|+++..|+++++
T Consensus 216 ~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDI 232 (280)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
No 140
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=359.14 Aligned_cols=220 Identities=26% Similarity=0.390 Sum_probs=186.0
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--C-Ccee
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--S-RKVS 92 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~-~~~~ 92 (612)
...|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.+
T Consensus 4 ~~~l~~~~l~~~~------------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 65 (253)
T PRK14242 4 PPKMEARGLSFFY------------------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE 65 (253)
T ss_pred CcEEEEeeeEEEE------------------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCc
Confidence 4568999999988 33569999999999999999999999999999999999864 1 1368
Q ss_pred eEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cc
Q 046991 93 GKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VA 163 (612)
Q Consensus 93 G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 163 (612)
|+|.++|+++.. ..+++.++|++|++.+++ .||+||+.+....+. ....++..++++++++.+|+.+ ..
T Consensus 66 G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (253)
T PRK14242 66 GEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG-VKDKAYLAERVERSLRHAALWDEVKDRL 143 (253)
T ss_pred eEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCchhhhHHh
Confidence 999999988742 245678999999998888 499999988754321 1123344577889999999854 33
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++
T Consensus 144 ~~~~~------~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~ 214 (253)
T PRK14242 144 HESAL------GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARV 214 (253)
T ss_pred hCCcc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHh
Confidence 44444 899999999999999999999999999999999999999999999984 4 689999999998 58899
Q ss_pred cCeEEEEcCCeEEEecChhhH
Q 046991 244 FDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 244 ~D~v~lL~~G~iv~~G~~~~~ 264 (612)
||++++|++|+++..|+++++
T Consensus 215 ~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 215 SDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999988765
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.4e-43 Score=353.48 Aligned_cols=215 Identities=31% Similarity=0.438 Sum_probs=183.7
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++|+++++.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 5 ~~l~~~~l~~~~~~--------------~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~ 68 (228)
T PRK10584 5 NIVEVHHLKKSVGQ--------------GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVS 68 (228)
T ss_pred ceEEEeeeEEEccC--------------CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEE
Confidence 36899999998831 00113599999999999999999999999999999999999976 799999
Q ss_pred ECCeeCCh---hh---h-cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 046991 97 VNDRPMDA---EH---F-RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG 169 (612)
Q Consensus 97 ~~g~~~~~---~~---~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 169 (612)
++|+++.. .. . ++.++|++|++.+++.+|+.||+.+....+ ....++..++++++++.+|+.+..++.+.
T Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 69 LVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred ECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCChh-
Confidence 99998742 11 2 357999999999999999999998765332 11334556788999999999988888776
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+ +.+|++++
T Consensus 146 -----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~ 218 (228)
T PRK10584 146 -----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLR 218 (228)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEE
Confidence 899999999999999999999999999999999999999999999997666889999999997 35 56999999
Q ss_pred EcCCeEEE
Q 046991 250 LSNGFVVH 257 (612)
Q Consensus 250 L~~G~iv~ 257 (612)
|++|+++.
T Consensus 219 l~~g~i~~ 226 (228)
T PRK10584 219 LVNGQLQE 226 (228)
T ss_pred EECCEEEe
Confidence 99999874
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=359.08 Aligned_cols=214 Identities=31% Similarity=0.466 Sum_probs=186.2
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 2 ~~l~~~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 61 (241)
T PRK14250 2 NEIEFKEVSYSS------------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSIL 61 (241)
T ss_pred ceEEEEeEEEEe------------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 358999999887 345699999999999999999999999999999999999976 799999
Q ss_pred ECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046991 97 VNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGSS 172 (612)
Q Consensus 97 ~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 172 (612)
++|+++.. ...++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.+||. +..++.+.
T Consensus 62 ~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (241)
T PRK14250 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK----G--EKNVDVEYYLSIVGLNKEYATRDVK---- 130 (241)
T ss_pred ECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc----C--cHHHHHHHHHHHcCCCHHHhhCCcc----
Confidence 99988642 345678999999998887 59999998653221 1 1235678899999996 46666665
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++
T Consensus 131 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~ 207 (241)
T PRK14250 131 --NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK 207 (241)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999997655899999999998 48889999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|+++..|+++++
T Consensus 208 G~i~~~~~~~~~ 219 (241)
T PRK14250 208 GILVEYAKTYDF 219 (241)
T ss_pred CEEEEeCCHHHH
Confidence 999999988765
No 143
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=377.07 Aligned_cols=195 Identities=31% Similarity=0.481 Sum_probs=176.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhhcccEEEEecCCCcCCCCCH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.. ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999999977 79999999988642 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
+||+.++.. ....++++++++.+||.+..++.++ +|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA--------KSMVAQFDKIVALLGIEPLLDRYPG------SLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh--------hhhHHHHHHHHHHcCCchhhhCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987632 1234578999999999988888876 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 207 DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 207 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+.++..+.+.|++++++.|+|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999998766899999999998 589999999999999999999998864
No 144
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=371.74 Aligned_cols=227 Identities=21% Similarity=0.293 Sum_probs=189.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR--KVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I 95 (612)
.|+++||++.|.. +.+.+.+|+||||+|++||+++|+|+||||||||+++|+|+.++. +.+|+|
T Consensus 3 ~L~v~~l~~~y~~--------------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i 68 (330)
T PRK15093 3 LLDIRNLTIEFKT--------------SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM 68 (330)
T ss_pred eEEEeeeEEEEeC--------------CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE
Confidence 6899999999842 113456999999999999999999999999999999999998631 468999
Q ss_pred EECCeeCCh---hh----hcccEEEEecCCC--cCCCCCHHHHHHHHHHcc-CCC---CCHHHHHHHHHHHHHHcCCccc
Q 046991 96 LVNDRPMDA---EH----FRRISGYVTQDDA--LFPLLTVEETLMCSALLR-LTA---GRRKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 96 ~~~g~~~~~---~~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~-~~~---~~~~~~~~~v~~~l~~lgL~~~ 162 (612)
.++|+++.. +. .++.++||+|++. +.|.+||.+++....... ... ...++..+++.++++.+||.+.
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~ 148 (330)
T PRK15093 69 RFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH 148 (330)
T ss_pred EECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh
Confidence 999998742 22 2357999999975 678899999997643211 100 1123445678999999999753
Q ss_pred ---ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH
Q 046991 163 ---ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239 (612)
Q Consensus 163 ---~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 239 (612)
.++.+. +|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|||++|||++ .
T Consensus 149 ~~~~~~~p~------~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~ 221 (330)
T PRK15093 149 KDAMRSFPY------ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-M 221 (330)
T ss_pred HHHHhCCch------hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-H
Confidence 355554 899999999999999999999999999999999999999999999998766899999999998 4
Q ss_pred HHhccCeEEEEcCCeEEEecChhhHH
Q 046991 240 ILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 240 i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+.+++|++++|++|++++.|+.+++.
T Consensus 222 v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 222 LSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 88999999999999999999987763
No 145
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=357.54 Aligned_cols=220 Identities=24% Similarity=0.338 Sum_probs=185.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS-RKVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~-~~~~G~I~ 96 (612)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+.+|+|.
T Consensus 2 ~~~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~ 63 (246)
T PRK14269 2 IAKTTNLNLFY------------------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE 63 (246)
T ss_pred ceeeeeeEEEE------------------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE
Confidence 57889999888 345799999999999999999999999999999999999753 24799999
Q ss_pred ECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046991 97 VNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASSRIGG 169 (612)
Q Consensus 97 ~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 169 (612)
++|+++.. ...++.++|++|++.+++ .|++||+.+....+......++..++++++++.+|+.+ ..++.+
T Consensus 64 ~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 140 (246)
T PRK14269 64 IEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA-- 140 (246)
T ss_pred ECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCc--
Confidence 99998743 345678999999998887 69999998865432110112344567889999999953 334444
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++
T Consensus 141 ----~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~ 213 (246)
T PRK14269 141 ----LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAF 213 (246)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEE
Confidence 4899999999999999999999999999999999999999999999985 3 789999999998 48899999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|+++..|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 214 FHLGELIEFGESKEFF 229 (246)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999987653
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=366.28 Aligned_cols=223 Identities=25% Similarity=0.394 Sum_probs=188.1
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++|+++++..+ ....+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.
T Consensus 5 ~~l~i~nl~~~~~~~-------------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 69 (289)
T PRK13645 5 KDIILDNVSYTYAKK-------------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTI 69 (289)
T ss_pred ceEEEEEEEEEeCCC-------------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEE
Confidence 358999999988310 00113599999999999999999999999999999999999976 789999
Q ss_pred ECCeeCC--------hhhhcccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccc
Q 046991 97 VNDRPMD--------AEHFRRISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASS 165 (612)
Q Consensus 97 ~~g~~~~--------~~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 165 (612)
++|+++. ...+++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++
T Consensus 70 ~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 70 VGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL--GENKQEAYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred ECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 9998763 1345678999999973 444 59999998865321 123444556788999999994 56777
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||
T Consensus 147 ~~~------~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d 219 (289)
T PRK13645 147 SPF------ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIAD 219 (289)
T ss_pred Chh------hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCC
Confidence 775 899999999999999999999999999999999999999999999997656899999999998 5889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|++++.|+++++
T Consensus 220 ~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 220 EVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 147
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=357.77 Aligned_cols=220 Identities=23% Similarity=0.364 Sum_probs=185.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCceee
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI---SSRKVSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~---~~~~~~G 93 (612)
++|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+.+|
T Consensus 2 ~~l~~~~~~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G 63 (250)
T PRK14245 2 VKIDARDVNFWY------------------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63 (250)
T ss_pred cEEEEEEEEEEE------------------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce
Confidence 578999999887 3456999999999999999999999999999999999973 3312589
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VAS 164 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~ 164 (612)
+|.++|+++.. ...++.++|++|++.+++ .|++||+.+....+. ....+...++++++++.+|+.+ ..+
T Consensus 64 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14245 64 EIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG-VKDNAFIRQRVEETLKGAALWDEVKDKLK 141 (250)
T ss_pred EEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCcchhhhhh
Confidence 99999998742 345678999999998887 599999987654321 1122334567889999999864 344
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++|
T Consensus 142 ~~~~------~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~ 212 (250)
T PRK14245 142 ESAF------ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVS 212 (250)
T ss_pred CCcc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhC
Confidence 5444 899999999999999999999999999999999999999999999984 4 689999999998 488999
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|++++.|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999988764
No 148
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-43 Score=363.09 Aligned_cols=223 Identities=25% Similarity=0.366 Sum_probs=191.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-eeeEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK-VSGKL 95 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~-~~G~I 95 (612)
.+|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. .+|+|
T Consensus 4 ~~l~i~~l~~~~~~----------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i 67 (282)
T PRK13640 4 NIVEFKHVSFTYPD----------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI 67 (282)
T ss_pred ceEEEEEEEEEcCC----------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE
Confidence 46999999998820 12469999999999999999999999999999999999997721 13999
Q ss_pred EECCeeCCh---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 96 LVNDRPMDA---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
.++|+++.. ...++.+||++|++. .++..||+||+.+..... ..+.++..++++++++.+||.+..++.+.
T Consensus 68 ~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 142 (282)
T PRK13640 68 TVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR--AVPRPEMIKIVRDVLADVGMLDYIDSEPA--- 142 (282)
T ss_pred EECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC--CCCHHHHHHHHHHHHHHCCChhHhcCCcc---
Confidence 999998753 345678999999974 677789999998764322 22455566789999999999988888775
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. + ..||++++|+
T Consensus 143 ---~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~ 217 (282)
T PRK13640 143 ---NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLD 217 (282)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999986668999999999984 5 5799999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|+++++.
T Consensus 218 ~G~i~~~g~~~~~~ 231 (282)
T PRK13640 218 DGKLLAQGSPVEIF 231 (282)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998764
No 149
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=358.98 Aligned_cols=220 Identities=26% Similarity=0.414 Sum_probs=187.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+
T Consensus 4 ~l~i~~v~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~ 65 (258)
T PRK14241 4 RIDVKDLNIYY------------------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGE 65 (258)
T ss_pred cEEEeeEEEEE------------------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceE
Confidence 58999999988 3356999999999999999999999999999999999998642 26999
Q ss_pred EEECCeeCC-----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 046991 95 LLVNDRPMD-----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVASS 165 (612)
Q Consensus 95 I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 165 (612)
|.++|+++. ...+++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.+|+. +..++
T Consensus 66 I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 66 VLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-VRNKKDLDELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred EEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 999998863 23456789999999999999999999988654321 112344556788999999984 34455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||
T Consensus 145 ~~~------~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~-~~~~~~d 215 (258)
T PRK14241 145 PGG------GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQ-QAARVSD 215 (258)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhCC
Confidence 554 899999999999999999999999999999999999999999999985 3 589999999998 5889999
Q ss_pred eEEEEc------CCeEEEecChhhHH
Q 046991 246 RLVLLS------NGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~------~G~iv~~G~~~~~~ 265 (612)
++++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999987753
No 150
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-43 Score=353.74 Aligned_cols=217 Identities=30% Similarity=0.452 Sum_probs=190.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +.+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~ 60 (232)
T cd03300 1 IELENVSKFY------------------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLD 60 (232)
T ss_pred CEEEeEEEEe------------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEEC
Confidence 4688998887 345799999999999999999999999999999999999977 68999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+...... ...+...++++++++.+|+.+..++.+. .||
T Consensus 61 g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~lS 132 (232)
T cd03300 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK--LPKAEIKERVAEALDLVQLEGYANRKPS------QLS 132 (232)
T ss_pred CEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCchhhcCChh------hCC
Confidence 998753 2235689999999999999999999987654321 1234455678899999999988888775 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+.||++++|++|++++
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 133 GGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999997655899999999997 4889999999999999999
Q ss_pred ecChhhH
Q 046991 258 NGTLNHL 264 (612)
Q Consensus 258 ~G~~~~~ 264 (612)
.|+.+++
T Consensus 212 ~~~~~~~ 218 (232)
T cd03300 212 IGTPEEI 218 (232)
T ss_pred cCCHHHH
Confidence 9987655
No 151
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.4e-43 Score=361.88 Aligned_cols=229 Identities=25% Similarity=0.362 Sum_probs=190.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++|..+.. ..+.+.+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.+
T Consensus 4 ~l~~~~l~~~~~~~~~---------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~ 72 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG---------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLI 72 (267)
T ss_pred eEEEeceEEEecCCCC---------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEE
Confidence 5899999998831100 0001235799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 171 (612)
+|+++.. ...++.++|++|++. +++.+|+.|++.+....... ...++..++++++++.+||. +..++.+.
T Consensus 73 ~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 148 (267)
T PRK15112 73 DDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD-LEPEQREKQIIETLRQVGLLPDHASYYPH--- 148 (267)
T ss_pred CCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHcCCChHHHhcCch---
Confidence 9998742 233467999999975 67888999999876543211 12344556789999999994 56676665
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|+
T Consensus 149 ---~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~ 224 (267)
T PRK15112 149 ---MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH 224 (267)
T ss_pred ---hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 899999999999999999999999999999999999999999999997656899999999998 5888999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|+++..|+++++.
T Consensus 225 ~G~i~~~~~~~~~~ 238 (267)
T PRK15112 225 QGEVVERGSTADVL 238 (267)
T ss_pred CCEEEecCCHHHHh
Confidence 99999999877653
No 152
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.3e-43 Score=357.51 Aligned_cols=229 Identities=30% Similarity=0.377 Sum_probs=189.5
Q ss_pred EEeeeEEEEecccccc---cceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 20 ETKNLSYKLCSKFDEF---NWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 20 ~~~~ls~~~~~~~~~~---~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
+++|+++.|....+.. ..+...+.++++.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~ 79 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVR 79 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEE
Confidence 5678887775432110 00111223455678899999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh--hhhcccEEEEe-cCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 97 VNDRPMDA--EHFRRISGYVT-QDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 97 ~~g~~~~~--~~~~~~i~yv~-Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
++|++... ..+++.++|++ |++.+++.+|++|++.+..... ....++..++++++++.+|+.+..++.++
T Consensus 80 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 152 (236)
T cd03267 80 VAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY--DLPPARFKKRLDELSELLDLEELLDTPVR----- 152 (236)
T ss_pred ECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 99987532 34567899998 5567888999999998865432 11344455678899999999988888886
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ ++.++||++++|++|
T Consensus 153 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G 230 (236)
T cd03267 153 -QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKG 230 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCC
Confidence 899999999999999999999999999999999999999999999998766889999999997 588999999999999
Q ss_pred eEEEec
Q 046991 254 FVVHNG 259 (612)
Q Consensus 254 ~iv~~G 259 (612)
++++.|
T Consensus 231 ~i~~~g 236 (236)
T cd03267 231 RLLYDG 236 (236)
T ss_pred EEEecC
Confidence 998765
No 153
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.1e-43 Score=360.19 Aligned_cols=218 Identities=29% Similarity=0.480 Sum_probs=188.2
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 2 l~~~~l~~~~------------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~ 61 (256)
T TIGR03873 2 LRLSRVSWSA------------------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLA 61 (256)
T ss_pred ceEEeEEEEE------------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEEC
Confidence 6789999887 345799999999999999999999999999999999999976 78999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHH-c-cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSAL-L-RLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
|+++.. ...++.++|++|++.+++.+||+||+.+... . .......++..+++.++++.+|+.+..++.++
T Consensus 62 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 136 (256)
T TIGR03873 62 GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS----- 136 (256)
T ss_pred CEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----
Confidence 988642 3455679999999888888999999987521 1 00011122344678999999999888888876
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 8999999999999999999999999999999999999999999999975 4889999999998 588999999999999
Q ss_pred eEEEecChhhH
Q 046991 254 FVVHNGTLNHL 264 (612)
Q Consensus 254 ~iv~~G~~~~~ 264 (612)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999988765
No 154
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.1e-43 Score=376.01 Aligned_cols=199 Identities=31% Similarity=0.501 Sum_probs=178.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhhcccEEEEecCCCcCCCCCH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|+++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999999977 79999999998642 1346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
+||+.++.... ..++.+++++++++.+||.+..++.+. +||||||||++||+||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~------~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA----RPSERRISFERVIELLGIGHLLGRLPG------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc----ChhHHHHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 223445678999999999988888876 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 207 DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 207 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999998766899999999998 588999999999999999999988764
No 155
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.5e-43 Score=349.89 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=182.8
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+ +. +++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 ~~~~~l~~~~------------------~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 58 (213)
T TIGR01277 1 LALDKVRYEY------------------EH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVN 58 (213)
T ss_pred CeEEeeeEEe------------------CC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEC
Confidence 4688998877 21 46799999999999999999999999999999999977 79999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|+++.. ...++.++|++|++.+++.+|+.||+.+...... ..+++.+++++++++.+||.+..++.+. .||
T Consensus 59 g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS 130 (213)
T TIGR01277 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRLPE------QLS 130 (213)
T ss_pred CEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--CccHHHHHHHHHHHHHcCcHHHhhCCcc------cCC
Confidence 998743 2356789999999999999999999987543211 1122335678899999999988888776 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999997656899999999998 4788999999999999998
Q ss_pred ecC
Q 046991 258 NGT 260 (612)
Q Consensus 258 ~G~ 260 (612)
.|+
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
No 156
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=362.38 Aligned_cols=222 Identities=24% Similarity=0.403 Sum_probs=188.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc------e
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK------V 91 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~------~ 91 (612)
+|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|++++.. .
T Consensus 1 ml~~~nl~~~~------------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~ 62 (272)
T PRK13547 1 MLTADHLHVAR------------------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV 62 (272)
T ss_pred CeEEEEEEEEE------------------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCC
Confidence 37899999887 34579999999999999999999999999999999999997620 1
Q ss_pred eeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCccccccc
Q 046991 92 SGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 92 ~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....... ....++..++++++++.+|+.+..++.
T Consensus 63 ~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (272)
T PRK13547 63 TGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD 142 (272)
T ss_pred ceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC
Confidence 8999999998642 34566789999998766678999999875321100 111133456788999999999887777
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLV---------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
+. .||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||+++|+++
T Consensus 143 ~~------~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 143 VT------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred cc------cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 75 89999999999999999 5999999999999999999999999999997655899999999998
Q ss_pred hHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 238 FRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 238 ~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
++.++||++++|++|++++.|+++++
T Consensus 217 -~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 217 -LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred -HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 48889999999999999999998775
No 157
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.9e-43 Score=354.16 Aligned_cols=218 Identities=30% Similarity=0.465 Sum_probs=190.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 i~i~~l~~~~------------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~ 60 (237)
T TIGR00968 1 IEIANISKRF------------------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLN 60 (237)
T ss_pred CEEEEEEEEE------------------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEEC
Confidence 4688999887 345699999999999999999999999999999999999976 78999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|.++.. ...++.++|++|++.+++.+|+.||+.+..... ........++++++++.+++.+..++.++ .||
T Consensus 61 g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~lS 132 (237)
T TIGR00968 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR--KHPKAKIKARVEELLELVQLEGLGDRYPN------QLS 132 (237)
T ss_pred CEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCChh------hCC
Confidence 998753 234567999999999999999999998765432 11233445678999999999888888776 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
|||+||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ ++.++||++++|++|++++
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987655899999999997 5889999999999999999
Q ss_pred ecChhhHH
Q 046991 258 NGTLNHLE 265 (612)
Q Consensus 258 ~G~~~~~~ 265 (612)
.|+.+++.
T Consensus 212 ~~~~~~~~ 219 (237)
T TIGR00968 212 IGSPDEVY 219 (237)
T ss_pred ecCHHHHH
Confidence 99987753
No 158
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=358.04 Aligned_cols=238 Identities=26% Similarity=0.355 Sum_probs=205.8
Q ss_pred ceEEEeeeEEEEecccccccce-ecc-----cccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 046991 17 CRLETKNLSYKLCSKFDEFNWV-YCG-----VTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~-~~~-----~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~ 90 (612)
..++++|+++-+-......-.. -.+ +-++.+-..-++|+|++++.||+..|||-||||||||+|+|.++++|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence 5689999998774322211000 001 11223445578999999999999999999999999999999999987
Q ss_pred eeeEEEECCeeCC---h---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc
Q 046991 91 VSGKLLVNDRPMD---A---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA 163 (612)
Q Consensus 91 ~~G~I~~~g~~~~---~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~ 163 (612)
++|+|+++|+++. . .+ .++.+++|+|+..|+|..||.||..|+..++ +.++++.++++.++|+.+||+...
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~--Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ--GVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec--CCCHHHHHHHHHHHHHHcCchhhh
Confidence 7999999999863 2 22 3467999999999999999999999997654 457889999999999999999999
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
++++. +|||||||||.+||||+.+|+||++|||+|+|||--+.++.+.|.++.++.++|||++|||.+ |++++
T Consensus 159 ~~yp~------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 159 DKYPN------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hcCcc------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 99887 899999999999999999999999999999999999999999999998888999999999998 69999
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 046991 244 FDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 244 ~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
-|||.+|++|+++..|+++|+.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999975
No 159
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-43 Score=358.19 Aligned_cols=222 Identities=23% Similarity=0.352 Sum_probs=188.2
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS--R-KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~--~-~~ 91 (612)
+...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ . +.
T Consensus 10 ~~~~l~~~~l~~~~------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~ 71 (260)
T PRK10744 10 APSKIQVRNLNFYY------------------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71 (260)
T ss_pred CCceEEEEEEEEEe------------------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCc
Confidence 45569999999988 335699999999999999999999999999999999999862 1 36
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cc
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HV 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~ 162 (612)
+|+|.++|+++.. ..+++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+|+. +.
T Consensus 72 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~ 149 (260)
T PRK10744 72 EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE-KLSRAEMDERVEWALTKAALWNEVKDK 149 (260)
T ss_pred ceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-CCCHHHHHHHHHHHHHHcCCChhhHHH
Confidence 8999999988731 345678999999998887 799999987653221 123444556789999999984 33
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+
T Consensus 150 ~~~~~~------~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~ 220 (260)
T PRK10744 150 LHQSGY------SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAAR 220 (260)
T ss_pred HhcCCC------CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHH
Confidence 455554 899999999999999999999999999999999999999999999985 3 689999999998 4888
Q ss_pred ccCeEEEEcCCeEEEecChhhHH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
++|++++|++|+++..|+++++.
T Consensus 221 ~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 221 CSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999987753
No 160
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.1e-43 Score=352.87 Aligned_cols=210 Identities=28% Similarity=0.482 Sum_probs=184.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~l~~v~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (223)
T TIGR03740 1 LETKNLSKRF------------------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFD 60 (223)
T ss_pred CEEEeEEEEE------------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4678888877 345699999999999999999999999999999999999976 79999999
Q ss_pred CeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh
Q 046991 99 DRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG 178 (612)
Q Consensus 99 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg 178 (612)
|+++.... ++.++|++|++.+++.+|++||+.+..... ... .+++.++++.+|+++..++.++ .|||
T Consensus 61 ~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~------~LS~ 127 (223)
T TIGR03740 61 GHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLL--GLP----DSRIDEVLNIVDLTNTGKKKAK------QFSL 127 (223)
T ss_pred CEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHc--CCC----HHHHHHHHHHcCCcHHHhhhHh------hCCH
Confidence 99875332 357999999999999999999998765432 111 2467889999999988888776 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEe
Q 046991 179 GERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHN 258 (612)
Q Consensus 179 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 258 (612)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|++|+++..
T Consensus 128 G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999975 4889999999998 48899999999999999999
Q ss_pred cChhh
Q 046991 259 GTLNH 263 (612)
Q Consensus 259 G~~~~ 263 (612)
|++++
T Consensus 206 ~~~~~ 210 (223)
T TIGR03740 206 GKINK 210 (223)
T ss_pred cChhh
Confidence 98653
No 161
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-43 Score=359.96 Aligned_cols=221 Identities=23% Similarity=0.336 Sum_probs=191.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++++. +...+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+| .+|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~ 66 (277)
T PRK13642 4 ILEVENLVFKYE---------------KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKI 66 (277)
T ss_pred eEEEEEEEEEcC---------------CCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEE
Confidence 689999999883 11234599999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|+++.. ...++.++|++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..++.+.
T Consensus 67 ~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 139 (277)
T PRK13642 67 DGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ--GIPREEMIKRVDEALLAVNMLDFKTREPA----- 139 (277)
T ss_pred CCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----
Confidence 9998743 345678999999974 577789999998765321 12344555778999999999988888776
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|
T Consensus 140 -~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G 216 (277)
T PRK13642 140 -RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAG 216 (277)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECC
Confidence 8999999999999999999999999999999999999999999999986568999999999984 64 69999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
No 162
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=356.65 Aligned_cols=221 Identities=24% Similarity=0.353 Sum_probs=187.2
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-cee
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS--R-KVS 92 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~--~-~~~ 92 (612)
..+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ . +.+
T Consensus 10 ~~~l~i~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~ 71 (259)
T PRK14274 10 QEVYQINGMNLWY------------------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71 (259)
T ss_pred CceEEEeeEEEEE------------------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCc
Confidence 3479999999988 345699999999999999999999999999999999999863 1 258
Q ss_pred eEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cc
Q 046991 93 GKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VA 163 (612)
Q Consensus 93 G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 163 (612)
|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+...... ...+++..++++++++.+|+.+ ..
T Consensus 72 G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l 149 (259)
T PRK14274 72 GEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG-TKNKKKLQEIVEKSLKDVALWDEVKDRL 149 (259)
T ss_pred eEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhhh
Confidence 999999998741 2456789999999988886 99999987643321 1123445567889999999853 34
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
++.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|+|++||+++ ++.++
T Consensus 150 ~~~~~------~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~ 220 (259)
T PRK14274 150 HTQAL------SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQ-QAARV 220 (259)
T ss_pred hCCcc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHH-HHHHh
Confidence 55554 899999999999999999999999999999999999999999999985 3 689999999998 58899
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 046991 244 FDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 244 ~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
||++++|++|+++..|+++++.
T Consensus 221 ~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 221 SDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999988753
No 163
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-43 Score=354.52 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=186.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--SR-KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~~-~~~G~ 94 (612)
.|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+
T Consensus 4 ~l~~~nl~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 65 (252)
T PRK14256 4 KVKLEQLNVHF------------------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK 65 (252)
T ss_pred EEEEEEEEEEe------------------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceE
Confidence 48999999988 33569999999999999999999999999999999999985 21 25899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++.. ..+++.++|++|++.+++.+|++||+.+...... .....+..++++++++.+|+.+ ..++
T Consensus 66 v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14256 66 ILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG-RVNRSEADEIVESSLKRVALWDEVKDRLKS 144 (252)
T ss_pred EEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 9999998642 2457789999999999999999999987643221 1123344567889999999864 3344
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||
T Consensus 145 ~~~------~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d 215 (252)
T PRK14256 145 NAM------ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSD 215 (252)
T ss_pred CcC------cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCC
Confidence 444 8999999999999999999999999999999999999999999999964 579999999998 5889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|+++..|+++++
T Consensus 216 ~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKI 234 (252)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998765
No 164
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-43 Score=351.34 Aligned_cols=216 Identities=32% Similarity=0.488 Sum_probs=188.9
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++ +|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~ 59 (235)
T cd03299 1 LKVENLSKDW------------------KEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLN 59 (235)
T ss_pred CeeEeEEEEe------------------CCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEC
Confidence 4678888877 223 89999999999999999999999999999999999977 78999999
Q ss_pred CeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 99 DRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 99 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
|.++.. ...++.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.+||.+..++.+. .||
T Consensus 60 g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS 131 (235)
T cd03299 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR--KVDKKEIERKVLEIAEMLGIDHLLNRKPE------TLS 131 (235)
T ss_pred CEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHHhcCcc------cCC
Confidence 998753 223578999999999999999999998764332 12344555678899999999988888876 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||++. ++.+.+|++++|++|+++.
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997655899999999997 4888999999999999999
Q ss_pred ecChhhH
Q 046991 258 NGTLNHL 264 (612)
Q Consensus 258 ~G~~~~~ 264 (612)
.|+.+++
T Consensus 211 ~~~~~~~ 217 (235)
T cd03299 211 VGKPEEV 217 (235)
T ss_pred ecCHHHH
Confidence 9987765
No 165
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=354.20 Aligned_cols=218 Identities=27% Similarity=0.384 Sum_probs=184.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--SR-KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~~-~~~G~ 94 (612)
+|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+
T Consensus 5 ~l~~~~l~~~~------------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~ 66 (252)
T PRK14239 5 ILQVSDLSVYY------------------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGS 66 (252)
T ss_pred eEEEEeeEEEE------------------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccce
Confidence 68999999988 34569999999999999999999999999999999999864 31 14899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++.. ..+++.++|++|++.+++ .||+||+.+..... .....+...++++++++.+++.+ ..++
T Consensus 67 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14239 67 IVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-GIKDKQVLDEAVEKSLKGASIWDEVKDRLHD 144 (252)
T ss_pred EEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHcCCchhHHHHHhc
Confidence 9999998732 245678999999998887 79999998865332 11123334567888999999753 3455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||
T Consensus 145 ~~~------~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d 215 (252)
T PRK14239 145 SAL------GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ-QASRISD 215 (252)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHH-HHHHhCC
Confidence 554 8999999999999999999999999999999999999999999999853 589999999997 5889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|++++.|+.+++
T Consensus 216 ~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 216 RTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998775
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-43 Score=347.94 Aligned_cols=197 Identities=32% Similarity=0.464 Sum_probs=172.9
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhhcccEEEEecCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHFRRISGYVTQDDA 119 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~ 119 (612)
+++.+ |+|+++++ |+++|+||||||||||+++|+|+.+| .+|+|.++|+++.. ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 44555 99999999 99999999999999999999999976 79999999988631 234668999999999
Q ss_pred cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEE
Q 046991 120 LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLI 199 (612)
Q Consensus 120 l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllL 199 (612)
+++.+|++||+.+..... ..+..+++++++++.+|+.+..++.+. .||||||||++||++|+.+|++++|
T Consensus 86 ~~~~~t~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK----RNREDRISVDELLDLLGLDHLLNRYPA------QLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC----CHHHHHHHHHHHHHHcCCHhHhhcCcc------cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998764321 233445678899999999887787776 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998766899999999998 488899999999999998765
No 167
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.1e-44 Score=326.95 Aligned_cols=215 Identities=31% Similarity=0.459 Sum_probs=191.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++++++++.. ..+...||++|++.+++||.+||+|||||||||||-+++|+..+ ++|+|.
T Consensus 5 ~ii~~~~l~ktvg~--------------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~ 68 (228)
T COG4181 5 NIIEVHHLSKTVGQ--------------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVR 68 (228)
T ss_pred ceeehhhhhhhhcC--------------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEE
Confidence 36888999888742 23567899999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh------hhh-cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 046991 97 VNDRPMDA------EHF-RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG 169 (612)
Q Consensus 97 ~~g~~~~~------~~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 169 (612)
+.|+++.. ..+ .+++|+|+|...+.|+||..||+...+.++.. +..+..+.+.++|+.+||.+..+.+++
T Consensus 69 l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge--~~~~~~~~A~~lL~~vGLg~Rl~HyP~- 145 (228)
T COG4181 69 LLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE--SSADSRAGAKALLEAVGLGKRLTHYPA- 145 (228)
T ss_pred EcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC--ccccHHHHHHHHHHHhCcccccccCcc-
Confidence 99998753 123 47899999999999999999999998877632 344556778899999999988888776
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+|||||+|||+||||++..|++||.||||-+||..+..+|.++|-.+.++.|.|.|++||||. +..-|||.+-
T Consensus 146 -----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r 218 (228)
T COG4181 146 -----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLR 218 (228)
T ss_pred -----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheee
Confidence 999999999999999999999999999999999999999999999999999999999999996 6788999999
Q ss_pred EcCCeEEE
Q 046991 250 LSNGFVVH 257 (612)
Q Consensus 250 L~~G~iv~ 257 (612)
|.+|+++.
T Consensus 219 ~~~G~l~~ 226 (228)
T COG4181 219 LRSGRLVE 226 (228)
T ss_pred eecceecc
Confidence 99999874
No 168
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.3e-43 Score=353.13 Aligned_cols=201 Identities=28% Similarity=0.418 Sum_probs=175.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHH
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLM 131 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 131 (612)
|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999999976 7999999999875321 22489999999999999999998
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046991 132 CSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASA 211 (612)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 211 (612)
+......+...+++..++++++++.+||++..++.++ +||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChh------hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7642111122344556678999999999988888876 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhh
Q 046991 212 LHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 212 ~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 263 (612)
..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+++..|+..+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 99999999998766899999999998 5889999999999999998886543
No 169
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=353.49 Aligned_cols=219 Identities=26% Similarity=0.371 Sum_probs=186.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceee
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G 93 (612)
..|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|
T Consensus 3 ~~l~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G 64 (251)
T PRK14270 3 IKMESKNLNLWY------------------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG 64 (251)
T ss_pred cEEEEEEeEEEE------------------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCcc
Confidence 468999999887 3456999999999999999999999999999999999998642 2689
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cccc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVAS 164 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~ 164 (612)
+|.++|+++.. ...++.++|++|++.+++ +|++||+.+...... ....++..++++++++.+|+. +..+
T Consensus 65 ~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 65 EVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG-IKDKKELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred EEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCchhhhhHhh
Confidence 99999998742 234678999999999887 899999988654321 112334556788999999884 3345
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|
T Consensus 143 ~~~~------~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~ 213 (251)
T PRK14270 143 KSAL------KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVS 213 (251)
T ss_pred CCcc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhc
Confidence 5554 8999999999999999999999999999999999999999999999864 489999999997 588999
Q ss_pred CeEEEEcCCeEEEecChhhH
Q 046991 245 DRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~ 264 (612)
|++++|++|+++..|+++++
T Consensus 214 d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 214 DYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred CEEEEEECCeEEEeCCHHHH
Confidence 99999999999999998875
No 170
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=352.89 Aligned_cols=221 Identities=26% Similarity=0.398 Sum_probs=186.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---eee
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK---VSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~---~~G 93 (612)
+.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|.+ .+|
T Consensus 3 ~~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G 64 (252)
T PRK14272 3 LLLSAQDVNIYY------------------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG 64 (252)
T ss_pred EEEEEeeeEEEE------------------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce
Confidence 468999999888 34579999999999999999999999999999999999987632 489
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cccc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVAS 164 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~ 164 (612)
+|.++|+++.. ..+++.++|++|++.+++.+|+.||+.+...... ...+++..++++++++.+++. +..+
T Consensus 65 ~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 65 RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred eEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCcchhhhhhhc
Confidence 99999988642 2456789999999999999999999987643221 112334456677888888764 3445
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.|
T Consensus 144 ~~~~------~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~ 214 (252)
T PRK14272 144 TPAT------GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMH-QAARVS 214 (252)
T ss_pred CCcc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhC
Confidence 5554 899999999999999999999999999999999999999999999985 3 689999999998 588899
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|++++.|+++++.
T Consensus 215 d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 215 DTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999987763
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.1e-42 Score=355.23 Aligned_cols=219 Identities=27% Similarity=0.408 Sum_probs=186.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 6 ~l~~~~l~~~~------------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 65 (258)
T PRK11701 6 LLSVRGLTKLY------------------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHY 65 (258)
T ss_pred eEEEeeeEEEc------------------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEE
Confidence 68999999988 335699999999999999999999999999999999999977 7999999
Q ss_pred CCee-----CCh---hh----hcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-c
Q 046991 98 NDRP-----MDA---EH----FRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-V 162 (612)
Q Consensus 98 ~g~~-----~~~---~~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~ 162 (612)
+|++ +.. .. .++.++|++|++ .+++.+|+.||+.+..... ......+..+++.++++.+++.+ .
T Consensus 66 ~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~ 144 (258)
T PRK11701 66 RMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLERVEIDAAR 144 (258)
T ss_pred CCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHcCCChhH
Confidence 9987 532 11 245799999997 3677889999997643211 11122344567889999999974 5
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+. .||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+
T Consensus 145 ~~~~~~------~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~ 217 (258)
T PRK11701 145 IDDLPT------TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARL 217 (258)
T ss_pred HhCCCc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHH
Confidence 677665 899999999999999999999999999999999999999999999987656899999999998 4788
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
.+|++++|++|++++.|+++++
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998765
No 172
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=355.59 Aligned_cols=221 Identities=24% Similarity=0.315 Sum_probs=188.0
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---Cce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS---RKV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~---~~~ 91 (612)
....|+++|+++++ +++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.
T Consensus 17 ~~~~l~~~nl~~~~------------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 78 (267)
T PRK14237 17 EEIALSTKDLHVYY------------------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARV 78 (267)
T ss_pred CCeEEEEeeEEEEE------------------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCc
Confidence 44579999999988 346799999999999999999999999999999999999864 147
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----c
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----V 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~ 162 (612)
+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+..... ....+++..+++.++++.++|.+ .
T Consensus 79 ~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~i~~~ 156 (267)
T PRK14237 79 TGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-GVKDKKVLDEIVETSLKQAALWDQVKDD 156 (267)
T ss_pred ceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-CCCCHHHHHHHHHHHHHHcCCCchhhhh
Confidence 9999999998742 235678999999998887 59999998864321 11133445567889999999853 3
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+
T Consensus 157 ~~~~~------~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~ 227 (267)
T PRK14237 157 LHKSA------LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAAR 227 (267)
T ss_pred hcCCc------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHH
Confidence 44444 4899999999999999999999999999999999999999999999985 3 689999999998 5889
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||++++|++|+++..|+++++
T Consensus 228 ~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 228 ASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred hcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998775
No 173
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=352.31 Aligned_cols=218 Identities=27% Similarity=0.411 Sum_probs=185.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.|+++|+++.+ +++.+++|+||++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~ 64 (250)
T PRK14240 3 KISVKDLDLFY------------------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGE 64 (250)
T ss_pred eEEEEEEEEEE------------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 58899999988 3356999999999999999999999999999999999987532 25899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 165 (612)
|.++|+++.. ...++.++|++|++.+++ +|++||+.+...... ....++.+++++++++.+++. +..++
T Consensus 65 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 65 VLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG-IKDKKKLDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred EEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhHHHHhc
Confidence 9999998742 245678999999998888 899999998654321 112344567788899999875 33455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|
T Consensus 143 ~~~------~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d 213 (250)
T PRK14240 143 SAL------GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISD 213 (250)
T ss_pred CCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCC
Confidence 554 899999999999999999999999999999999999999999999985 3 689999999997 5889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|+++..|+++++
T Consensus 214 ~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 214 KTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999988765
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-43 Score=357.90 Aligned_cols=220 Identities=23% Similarity=0.360 Sum_probs=185.6
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~ 91 (612)
+..+|+++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.
T Consensus 10 ~~~~l~i~nl~~~~------------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~ 71 (269)
T PRK14259 10 KNIIISLQNVTISY------------------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71 (269)
T ss_pred CCceEEEEeEEEEE------------------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC
Confidence 44679999999988 3456999999999999999999999999999999999998631 37
Q ss_pred eeEEEECCeeCC-----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cc
Q 046991 92 SGKLLVNDRPMD-----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HV 162 (612)
Q Consensus 92 ~G~I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~ 162 (612)
+|+|.++|+++. ...+++.++|++|++.+++. ||+||+.+.+..+ ... .+..++++++++.+++. +.
T Consensus 72 ~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN--GYT-GDMDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc--CCc-HHHHHHHHHHHHHhCCcchhhhh
Confidence 899999998763 23456789999999988885 9999998875432 111 23345678889988874 33
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+. +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+
T Consensus 148 ~~~~~~------~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~ 218 (269)
T PRK14259 148 LNESGY------SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQ-QAVR 218 (269)
T ss_pred hCCCcc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHH
Confidence 455554 899999999999999999999999999999999999999999999985 3 689999999998 5899
Q ss_pred ccCeEEEEcC-----------CeEEEecChhhHH
Q 046991 243 LFDRLVLLSN-----------GFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~-----------G~iv~~G~~~~~~ 265 (612)
+||++++|++ |++++.|+++++.
T Consensus 219 ~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 219 VSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred hcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999999996 6789999988764
No 175
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-43 Score=390.91 Aligned_cols=221 Identities=22% Similarity=0.360 Sum_probs=192.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|.+.+|+|.+
T Consensus 5 ~l~~~nl~~~~------------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 66 (506)
T PRK13549 5 LLEMKNITKTF------------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66 (506)
T ss_pred eEEEeeeEEEe------------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 69999999988 345799999999999999999999999999999999999975336999999
Q ss_pred CCeeCCh---h-hhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMDA---E-HFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA-GRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~---~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++.. . ..++.++||+|++.+++.+||+||+.+....+... .+.++..++++++++.+|+.+..++.++
T Consensus 67 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (506)
T PRK13549 67 EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG---- 142 (506)
T ss_pred CCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh----
Confidence 9998743 1 23567999999999999999999998865332111 1234455678999999999888888886
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++
T Consensus 143 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~ 218 (506)
T PRK13549 143 --NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRD 218 (506)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999975 5889999999998 48899999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (506)
T PRK13549 219 GRHIGTRPAAGM 230 (506)
T ss_pred CEEeeecccccC
Confidence 999999998764
No 176
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=352.13 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
+|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~ 64 (250)
T PRK14262 3 IIEIENFSAYY------------------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK 64 (250)
T ss_pred eEEEEeeEEEe------------------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE
Confidence 58999999887 3456999999999999999999999999999999999998631 26899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..+++++++++.+|+.+ ..++
T Consensus 65 i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14262 65 IYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG-VKSKHKLDRIVEESLKKAALWDEVKSELNK 142 (250)
T ss_pred EEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCchhHHHHhC
Confidence 9999988642 235678999999999888 899999988653321 1123344566889999999864 3455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|
T Consensus 143 ~~~------~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~-~~~~~~d 213 (250)
T PRK14262 143 PGT------RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIG-QAIRIAD 213 (250)
T ss_pred Chh------hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHH-HHHHhCC
Confidence 554 899999999999999999999999999999999999999999999986 3 689999999998 4889999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
++++|++|+++..|+++++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999987764
No 177
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=352.51 Aligned_cols=218 Identities=26% Similarity=0.376 Sum_probs=185.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 64 (249)
T PRK14253 3 KFNIENLDLFY------------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK 64 (249)
T ss_pred eEEEeccEEEE------------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE
Confidence 58899999888 3456999999999999999999999999999999999998752 35899
Q ss_pred EEECCeeCC----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 046991 95 LLVNDRPMD----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASSR 166 (612)
Q Consensus 95 I~~~g~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ 166 (612)
|.++|.++. ....++.++|++|++.+++ .||.||+.+..... ....++...+++.++++.+|+.+ ..++.
T Consensus 65 v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (249)
T PRK14253 65 LTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ-GIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142 (249)
T ss_pred EEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc-CCCchHHHHHHHHHHHHHcCCchhhhHHhhcC
Confidence 999998863 2345678999999999887 79999998764321 11123344567888899998853 34455
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||+
T Consensus 143 ~~------~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~ 213 (249)
T PRK14253 143 AF------GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDR 213 (249)
T ss_pred cc------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCE
Confidence 44 8999999999999999999999999999999999999999999999964 489999999998 58899999
Q ss_pred EEEEcCCeEEEecChhhH
Q 046991 247 LVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~ 264 (612)
+++|++|+++..|+++++
T Consensus 214 i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 214 TAFFLMGELVEHDDTQVI 231 (249)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 178
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=352.46 Aligned_cols=218 Identities=27% Similarity=0.369 Sum_probs=182.8
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-ceeeEE
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS--R-KVSGKL 95 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~--~-~~~G~I 95 (612)
-+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ . +.+|+|
T Consensus 6 ~~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 67 (251)
T PRK14244 6 ASVKNLNLWY------------------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67 (251)
T ss_pred EEeeeEEEEE------------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE
Confidence 3678888877 346799999999999999999999999999999999999852 1 368999
Q ss_pred EECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc----cccc
Q 046991 96 LVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV----ASSR 166 (612)
Q Consensus 96 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~ 166 (612)
.++|+++.. ..+++.++|++|++.+++. ||+||+.+....+......++.++.+.++++.+||.+. .++.
T Consensus 68 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (251)
T PRK14244 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS 146 (251)
T ss_pred EECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC
Confidence 999988632 2356789999999988886 99999987643321111233445678899999999652 3444
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.++||+
T Consensus 147 ~~------~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 147 AF------ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred hh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCE
Confidence 43 899999999999999999999999999999999999999999999984 3 789999999998 58889999
Q ss_pred EEEEcCCeEEEecChhhH
Q 046991 247 LVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~ 264 (612)
+++|++|++++.|+++++
T Consensus 218 i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 218 VAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 179
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=352.96 Aligned_cols=221 Identities=27% Similarity=0.398 Sum_probs=187.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. ..+|+
T Consensus 7 ~l~~~nl~~~~------------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~ 68 (261)
T PRK14258 7 AIKVNNLSFYY------------------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGR 68 (261)
T ss_pred eEEEeeEEEEe------------------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccce
Confidence 68999999988 3346999999999999999999999999999999999999762 14799
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++.. ..+++.++|++|++.+++ .|++||+.+....... .+..+..+++.++++.+++.+ ..++
T Consensus 69 i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (261)
T PRK14258 69 VEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW-RPKLEIDDIVESALKDADLWDEIKHKIHK 146 (261)
T ss_pred EEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 9999988631 345678999999998888 8999999876432211 123344567889999999854 3444
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||
T Consensus 147 ~~~------~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d 219 (261)
T PRK14258 147 SAL------DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSD 219 (261)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcC
Confidence 444 899999999999999999999999999999999999999999999987656899999999998 5899999
Q ss_pred eEEEEcC-----CeEEEecChhhHH
Q 046991 246 RLVLLSN-----GFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~-----G~iv~~G~~~~~~ 265 (612)
++++|++ |++++.|+++++.
T Consensus 220 ~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 220 FTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEEEEccCCCcCceEEEeCCHHHHH
Confidence 9999999 9999999998864
No 180
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=356.81 Aligned_cols=228 Identities=25% Similarity=0.378 Sum_probs=190.6
Q ss_pred CCCCCCCCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046991 4 PVRAPVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~ 83 (612)
|+-+|.+-. ....|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+
T Consensus 27 ~~~~~~~~~--~~~~l~i~~l~~~~------------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 27 PSGDPAASS--GETVIEARDLNVFY------------------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred CCCCccccC--CCceEEEEEEEEEE------------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 566666654 34478999999988 3356999999999999999999999999999999999
Q ss_pred cCCCC---CceeeEEEECCeeCC-----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 046991 84 GKISS---RKVSGKLLVNDRPMD-----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLK 155 (612)
Q Consensus 84 G~~~~---~~~~G~I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~ 155 (612)
|+.++ .+.+|+|.++|+++. ...+++.++|++|++.+++. ||.||+.+...... ... +..++++++++
T Consensus 87 Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~-~~~~~~~~~l~ 162 (285)
T PRK14254 87 RMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG--YDG-DIDERVEESLR 162 (285)
T ss_pred ccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC--CcH-HHHHHHHHHHH
Confidence 99863 136899999998863 23456789999999988886 99999988654321 122 34567899999
Q ss_pred HcCCc----ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEE
Q 046991 156 ELGLD----HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIIL 231 (612)
Q Consensus 156 ~lgL~----~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~ 231 (612)
.+|+. +..++.++ +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+
T Consensus 163 ~~~l~~~i~~~~~~~~~------~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii 234 (285)
T PRK14254 163 RAALWDEVKDQLDSSGL------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVI 234 (285)
T ss_pred HcCCCchhHHHHhCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEE
Confidence 99985 34455554 8999999999999999999999999999999999999999999999974 379999
Q ss_pred EccCCchHHHhccCeEE-EEcCCeEEEecChhhH
Q 046991 232 TIHQPGFRILELFDRLV-LLSNGFVVHNGTLNHL 264 (612)
Q Consensus 232 ~~H~~~~~i~~~~D~v~-lL~~G~iv~~G~~~~~ 264 (612)
+||+++ ++.+++|+++ +|++|+++..|+++++
T Consensus 235 ~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 235 VTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999998 5888999975 6799999999988765
No 181
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=354.31 Aligned_cols=221 Identities=27% Similarity=0.356 Sum_probs=185.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--C-Cce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--S-RKV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~-~~~ 91 (612)
+...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.
T Consensus 18 ~~~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 79 (268)
T PRK14248 18 KEHILEVKDLSIYY------------------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79 (268)
T ss_pred CCceEEEEEEEEEe------------------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC
Confidence 33479999999988 34569999999999999999999999999999999999864 1 137
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cc
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HV 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~ 162 (612)
+|+|.++|+++.. ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++. +.
T Consensus 80 ~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG-ERRKSVLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCCcchHHH
Confidence 8999999998742 2356789999999988885 99999987643221 112223445678889999885 33
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+
T Consensus 158 ~~~~~~------~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~ 228 (268)
T PRK14248 158 LHSSAL------SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQ-QALR 228 (268)
T ss_pred HhcCcc------cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHH-HHHH
Confidence 455554 8999999999999999999999999999999999999999999999853 589999999997 4889
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||++++|++|++++.|+++++
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998765
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9e-43 Score=388.27 Aligned_cols=219 Identities=22% Similarity=0.368 Sum_probs=191.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++++|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 4 ~i~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~ 63 (501)
T PRK10762 4 LLQLKGIDKAF------------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILY 63 (501)
T ss_pred eEEEeeeEEEe------------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 68999999988 346799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRL--TAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++.. ...++.++|++|++.+++.+||+||+.++..... ...+.++.+++++++++.+||.+..++.++
T Consensus 64 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 64 LGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh---
Confidence 9998742 1235679999999999999999999988643211 111234455678999999999988888887
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|+
T Consensus 141 ---~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~-~~~~~~d~i~~l~ 215 (501)
T PRK10762 141 ---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLK-EIFEICDDVTVFR 215 (501)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 8999999999999999999999999999999999999999999999975 4899999999998 5889999999999
Q ss_pred CCeEEEecChhhH
Q 046991 252 NGFVVHNGTLNHL 264 (612)
Q Consensus 252 ~G~iv~~G~~~~~ 264 (612)
+|+++..|+++++
T Consensus 216 ~G~i~~~~~~~~~ 228 (501)
T PRK10762 216 DGQFIAEREVADL 228 (501)
T ss_pred CCEEEEecCcCcC
Confidence 9999999988764
No 183
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-43 Score=377.58 Aligned_cols=229 Identities=30% Similarity=0.510 Sum_probs=194.5
Q ss_pred CCCCCCCCCCC-----CCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHH
Q 046991 3 LPVRAPVSGSR-----KALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTT 77 (612)
Q Consensus 3 ~~~~~~~~~~~-----~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTT 77 (612)
+|...+..+.. .+.+.++.+|+++.++ +++++++|+|+++++|+.+||+|+|||||||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~-----------------~g~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 300 SPVATPGSGEKAEVANEPPIEISLENLSFRYP-----------------DGKPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred CCCCCCCCccccccccCCCceeeecceEEecC-----------------CCCcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 45555555532 1456677779999984 3348999999999999999999999999999
Q ss_pred HHHHHHcCCCCCceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 046991 78 LLEILAGKISSRKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLL 154 (612)
Q Consensus 78 LL~~L~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l 154 (612)
|+++|+|+.+| ++|+|.+||.+.. +..++++++||+|++.+++. |++||+.++. +. ..++.+.+++
T Consensus 363 Ll~lL~G~~~~--~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~~----~s~e~i~~al 431 (559)
T COG4988 363 LLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR----PD----ASDEEIIAAL 431 (559)
T ss_pred HHHHHhCcCCC--CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC----Cc----CCHHHHHHHH
Confidence 99999999987 7999999998764 57899999999999999998 9999998752 11 2235677788
Q ss_pred HHcCCcccc------cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcE
Q 046991 155 KELGLDHVA------SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKT 228 (612)
Q Consensus 155 ~~lgL~~~~------~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 228 (612)
+..|+.+.. |+.+| +..++|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.++++ ++|
T Consensus 432 ~~a~l~~~v~~p~GLdt~ig--e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~kt 507 (559)
T COG4988 432 DQAGLLEFVPKPDGLDTVIG--EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKT 507 (559)
T ss_pred HHhcHHHhhcCCCcccchhc--cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCe
Confidence 888886544 55564 45568999999999999999999999999999999999999999999999975 589
Q ss_pred EEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 229 IILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 229 ii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+|++||++. ...-+|+|++|++|+++..|..+++.
T Consensus 508 vl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 508 VLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred EEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHh
Confidence 999999986 46789999999999999999998874
No 184
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-42 Score=353.29 Aligned_cols=224 Identities=27% Similarity=0.377 Sum_probs=188.4
Q ss_pred CCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--
Q 046991 12 SRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-- 89 (612)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-- 89 (612)
.......|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.
T Consensus 19 ~~~~~~~l~~~nl~~~~------------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~ 80 (272)
T PRK14236 19 LSDEQTALEVRNLNLFY------------------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDN 80 (272)
T ss_pred cCCCCcEEEEEEEEEEE------------------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccC
Confidence 33345579999999988 3356999999999999999999999999999999999998631
Q ss_pred -ceeeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc--
Q 046991 90 -KVSGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-- 161 (612)
Q Consensus 90 -~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-- 161 (612)
+.+|+|.++|+++.. ..+++.++|++|++.+++. |++||+.+...... ...+++.+++++++++.+++.+
T Consensus 81 ~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~ 158 (272)
T PRK14236 81 CRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG-INNRRVLDEAVERSLRGAALWDEV 158 (272)
T ss_pred CCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCChhH
Confidence 368999999998742 2456789999999998886 99999987654321 1123334567888999999863
Q ss_pred --cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH
Q 046991 162 --VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239 (612)
Q Consensus 162 --~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 239 (612)
..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ +
T Consensus 159 ~~~~~~~~~------~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~ 229 (272)
T PRK14236 159 KDRLHENAF------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQ-Q 229 (272)
T ss_pred HHHhhCCcc------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHH-H
Confidence 3445444 8999999999999999999999999999999999999999999999964 589999999998 4
Q ss_pred HHhccCeEEEEcCCeEEEecChhhH
Q 046991 240 ILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 240 i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+.+.||++++|++|+++..|+++++
T Consensus 230 ~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 230 AARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHhhCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999999988765
No 185
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.5e-42 Score=344.36 Aligned_cols=212 Identities=34% Similarity=0.522 Sum_probs=183.2
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+.. +.+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 2 l~~~~l~~~~~~--------------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~ 65 (220)
T TIGR02982 2 ISIRNLNHYYGH--------------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVL 65 (220)
T ss_pred EEEEEEEEEccC--------------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEC
Confidence 788999988721 11236799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 99 DRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 99 g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
|+++.. ...++.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+||.+..++.+.
T Consensus 66 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (220)
T TIGR02982 66 GQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP-NLSYQEARERARAMLEAVGLGDHLDYYPH---- 140 (220)
T ss_pred CEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCChhhhhcChh----
Confidence 998742 1356789999999999999999999998654321 12344556788999999999888888775
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++|||++||+++ +.++||++++|++
T Consensus 141 --~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~ 216 (220)
T TIGR02982 141 --NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED 216 (220)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC
Confidence 899999999999999999999999999999999999999999999997656899999999986 4589999999999
Q ss_pred CeE
Q 046991 253 GFV 255 (612)
Q Consensus 253 G~i 255 (612)
|++
T Consensus 217 g~~ 219 (220)
T TIGR02982 217 GKL 219 (220)
T ss_pred CEE
Confidence 986
No 186
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=353.75 Aligned_cols=221 Identities=27% Similarity=0.427 Sum_probs=184.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--SR-KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~~-~~ 91 (612)
....|+++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +. +.
T Consensus 21 ~~~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~ 82 (271)
T PRK14238 21 KKVVFDTQNLNLWY------------------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT 82 (271)
T ss_pred CceEEEEeeeEEEE------------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC
Confidence 44579999999988 33569999999999999999999999999999999999986 21 37
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC----ccc
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGL----DHV 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL----~~~ 162 (612)
+|+|.++|+++.. ..+++.++|++|++.+++. ||+||+.+...... ....+..++.+.++++.+++ .+.
T Consensus 83 ~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~ 160 (271)
T PRK14238 83 TGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG-IKDKKTLDEIVEKSLRGAAIWDELKDR 160 (271)
T ss_pred ceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcchHHHH
Confidence 9999999998731 3456789999999988875 99999998653321 11222334557788887754 334
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+
T Consensus 161 ~~~~~~------~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~i~~ 231 (271)
T PRK14238 161 LHDNAY------GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQ-QAAR 231 (271)
T ss_pred HhcCcc------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHH-HHHH
Confidence 455554 8999999999999999999999999999999999999999999999863 689999999998 4889
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||++++|++|+++..|+++++
T Consensus 232 ~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 232 ISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999988765
No 187
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=355.53 Aligned_cols=222 Identities=24% Similarity=0.347 Sum_probs=186.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--SR-KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~~-~~ 91 (612)
....|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.
T Consensus 36 ~~~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~ 97 (286)
T PRK14275 36 GKPHVVAKNFSIYY------------------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT 97 (286)
T ss_pred CceEEEEeeeEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC
Confidence 44578999999888 33569999999999999999999999999999999999864 21 27
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cc
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HV 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~ 162 (612)
+|+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+...... ..+....++++.++++.+|+. +.
T Consensus 98 ~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 98 TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG-INDKKQLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred ceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHhCCccchhhH
Confidence 8999999988632 2356789999999988885 99999998654321 112333456788899999874 34
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+
T Consensus 176 ~~~~~~------~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~ 246 (286)
T PRK14275 176 LDKNAL------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASR 246 (286)
T ss_pred hhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHH
Confidence 455554 8999999999999999999999999999999999999999999999863 589999999998 4888
Q ss_pred ccCeEEEEcCCeEEEecChhhHH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+||++++|++|+++..|+++++.
T Consensus 247 ~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 247 VSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999987753
No 188
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=349.89 Aligned_cols=219 Identities=26% Similarity=0.341 Sum_probs=185.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---eeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK---VSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~---~~G~ 94 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.+ .+|+
T Consensus 6 ~i~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 67 (253)
T PRK14261 6 ILSTKNLNLWY------------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGD 67 (253)
T ss_pred eEEEeeeEEEE------------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE
Confidence 68999999988 34579999999999999999999999999999999999975322 4899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++.. ...++.++|++|++.+++. ||+||+.+....+. .....+.++++.++++.+++.+ ..++
T Consensus 68 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 145 (253)
T PRK14261 68 ILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG-EKNKKTLDTIVEKSLKGAALWDEVKDRLHD 145 (253)
T ss_pred EEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC-CCCHHHHHHHHHHHHHHhcCchhhHHHhhc
Confidence 9999998642 2446779999999998885 99999998754321 1123344567888999998853 3445
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|
T Consensus 146 ~~~------~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d 216 (253)
T PRK14261 146 SAL------SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSD 216 (253)
T ss_pred Chh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCC
Confidence 554 8999999999999999999999999999999999999999999999864 589999999998 4888999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
++++|++|+++..|+++++.
T Consensus 217 ~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 217 YTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEEEEECCEEEEcCCHHHHH
Confidence 99999999999999987653
No 189
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-42 Score=340.05 Aligned_cols=197 Identities=34% Similarity=0.511 Sum_probs=167.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~ 96 (612)
.+.|+|++|.|+. +.+++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.
T Consensus 3 ~~~~~~~~~~~~~--------------~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~ 68 (202)
T cd03233 3 TLSWRNISFTTGK--------------GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68 (202)
T ss_pred eEEEEccEEEecc--------------CCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence 6899999999952 124567999999999999999999999999999999999999732 4799999
Q ss_pred ECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 97 VNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 97 ~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
++|+++.. ...++.++|++|++.+++.+||+||+.+..... .++.+.
T Consensus 69 i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~------ 117 (202)
T cd03233 69 YNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVR------ 117 (202)
T ss_pred ECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchh------
Confidence 99998753 345678999999999999999999998753210 344444
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|+++|+...++.+.+|++++|++|+
T Consensus 118 ~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~ 197 (202)
T cd03233 118 GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197 (202)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999765566766666554335889999999999999
Q ss_pred EEEec
Q 046991 255 VVHNG 259 (612)
Q Consensus 255 iv~~G 259 (612)
+++.|
T Consensus 198 i~~~g 202 (202)
T cd03233 198 QIYYG 202 (202)
T ss_pred EEecC
Confidence 98764
No 190
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=351.02 Aligned_cols=218 Identities=26% Similarity=0.366 Sum_probs=185.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-c--eeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-K--VSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~--~~G~ 94 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++. + .+|+
T Consensus 7 ~l~~~~l~~~~------------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~ 68 (259)
T PRK14260 7 AIKVKDLSFYY------------------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGV 68 (259)
T ss_pred eEEEEEEEEEE------------------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceE
Confidence 68999999888 3456999999999999999999999999999999999998753 2 4899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 165 (612)
|.++|+++.. ..+++.++|++|++.+++ .||+||+.+....+. ..++.+..++++++++.+|+. +..++
T Consensus 69 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (259)
T PRK14260 69 VDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA-KLPQADLDEIVESALKGAALWQEVKDKLNK 146 (259)
T ss_pred EEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 9999998632 345678999999999888 899999987654321 112334456788899999984 34455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||
T Consensus 147 ~~~------~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~i~~~~d 217 (259)
T PRK14260 147 SAL------GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQ-QATRVSD 217 (259)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcC
Confidence 554 8999999999999999999999999999999999999999999999853 589999999998 5899999
Q ss_pred eEEEEc-----CCeEEEecChhhH
Q 046991 246 RLVLLS-----NGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~-----~G~iv~~G~~~~~ 264 (612)
++++|+ +|++++.|+++++
T Consensus 218 ~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 218 FTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred eEEEEeccCCCCceEEEeCCHHHH
Confidence 999998 5999999999876
No 191
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=349.46 Aligned_cols=218 Identities=25% Similarity=0.378 Sum_probs=184.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS--R-KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~--~-~~~G~ 94 (612)
.|+++|+++++ +.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ . +.+|+
T Consensus 4 ~l~~~~l~~~~------------------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~ 65 (251)
T PRK14251 4 IISAKDVHLSY------------------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGE 65 (251)
T ss_pred eEEEEeeEEEE------------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceE
Confidence 58999999988 345699999999999999999999999999999999999862 1 26899
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 165 (612)
|.++|+++.. ...++.++|++|++.+++ .||+||+.+..... .....+...++++++++.+++. +..++
T Consensus 66 v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (251)
T PRK14251 66 IKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA-GVKDKELIDQRVEESLKQAAIWKETKDNLDR 143 (251)
T ss_pred EEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHcCCCcchHHHhcc
Confidence 9999998632 235678999999998886 69999998764322 1112333446788899999984 33455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|
T Consensus 144 ~~~------~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d 214 (251)
T PRK14251 144 NAQ------AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQ-QAGRISD 214 (251)
T ss_pred Chh------hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHH-HHHhhcC
Confidence 554 899999999999999999999999999999999999999999999985 3 589999999998 4889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|+++..|+.+++
T Consensus 215 ~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999988765
No 192
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-42 Score=348.51 Aligned_cols=220 Identities=24% Similarity=0.335 Sum_probs=183.9
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cee
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS--SR-KVS 92 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~~-~~~ 92 (612)
..+|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+
T Consensus 3 ~~~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~ 64 (252)
T PRK14255 3 KKIITSSDVHLFY------------------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64 (252)
T ss_pred cceEEEEeEEEEE------------------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcc
Confidence 4578999999988 33569999999999999999999999999999999999875 21 248
Q ss_pred eEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----ccc
Q 046991 93 GKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HVA 163 (612)
Q Consensus 93 G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 163 (612)
|+|.++|+++.. ...++.++|++|++.+++ .|++||+.+....+.. ..++...+++.+.++.+++. +..
T Consensus 65 G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~i~~~~ 142 (252)
T PRK14255 65 GNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV-KDKAVLDEAVETSLKQAAIWDEVKDHL 142 (252)
T ss_pred cEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHcCCccchhhHH
Confidence 999999998731 245678999999998888 6999999886543211 12223345677888888874 334
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
++.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.
T Consensus 143 ~~~~~------~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~ 213 (252)
T PRK14255 143 HESAL------SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRI 213 (252)
T ss_pred hcCcc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHh
Confidence 55554 8999999999999999999999999999999999999999999999864 479999999998 48899
Q ss_pred cCeEEEEcCCeEEEecChhhH
Q 046991 244 FDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 244 ~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+|++++|++|+++..|++.++
T Consensus 214 ~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 214 SDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999988765
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.2e-42 Score=352.88 Aligned_cols=228 Identities=26% Similarity=0.383 Sum_probs=189.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||++.+.... ...+..++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 3 ~l~~~nl~~~~~~~~---------~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~ 71 (268)
T PRK10419 3 LLNVSGLSHHYAHGG---------LSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSW 71 (268)
T ss_pred eEEEeceEEEecCCc---------cccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 589999999883100 00001146799999999999999999999999999999999999876 7999999
Q ss_pred CCeeCCh------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-cccccccc
Q 046991 98 NDRPMDA------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIG 168 (612)
Q Consensus 98 ~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 168 (612)
+|+++.. ...++.++|++|++ .+++..|+.|++.+..... ......+..++++++++.+|+. +..++.++
T Consensus 72 ~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 150 (268)
T PRK10419 72 RGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKAERLARASEMLRAVDLDDSVLDKRPP 150 (268)
T ss_pred CCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHcCCChhHhhCCCc
Confidence 9997642 23467899999997 4677889999997653211 1112444556789999999997 56677765
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++||+++
T Consensus 151 ------~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~ 223 (268)
T PRK10419 151 ------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVM 223 (268)
T ss_pred ------cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEE
Confidence 899999999999999999999999999999999999999999999997666899999999998 4888999999
Q ss_pred EEcCCeEEEecChhhH
Q 046991 249 LLSNGFVVHNGTLNHL 264 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~ 264 (612)
+|++|++++.|+++++
T Consensus 224 ~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 224 VMDNGQIVETQPVGDK 239 (268)
T ss_pred EEECCEEeeeCChhhc
Confidence 9999999999988764
No 194
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.2e-42 Score=349.93 Aligned_cols=220 Identities=28% Similarity=0.400 Sum_probs=184.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 3 ~l~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 62 (253)
T TIGR02323 3 LLQVSGLSKSY------------------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATY 62 (253)
T ss_pred eEEEeeeEEEe------------------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 68999999988 335689999999999999999999999999999999999977 7999999
Q ss_pred CCee-----CCh---hh----hcccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-cc
Q 046991 98 NDRP-----MDA---EH----FRRISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HV 162 (612)
Q Consensus 98 ~g~~-----~~~---~~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~ 162 (612)
+|++ +.. .. .++.++|++|++. +.+.+|+.||+.+..... ......+..++++++++.+|+. +.
T Consensus 63 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~ 141 (253)
T TIGR02323 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GARHYGNIRAAAHDWLEEVEIDPTR 141 (253)
T ss_pred ecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cccchHHHHHHHHHHHHHcCCChhh
Confidence 9976 421 11 2457999999974 456679999997543211 1111223456788999999997 46
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+
T Consensus 142 ~~~~~~------~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~ 214 (253)
T TIGR02323 142 IDDLPR------AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARL 214 (253)
T ss_pred hhcCch------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 677765 899999999999999999999999999999999999999999999987656899999999998 4888
Q ss_pred ccCeEEEEcCCeEEEecChhhHH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
.+|++++|++|+++..|+++++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999887653
No 195
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.1e-42 Score=350.29 Aligned_cols=218 Identities=23% Similarity=0.401 Sum_probs=184.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR--KVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I 95 (612)
.|+++|+++++ + +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +++|+|
T Consensus 4 ~l~~~~l~~~~------------------~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i 64 (254)
T PRK10418 4 QIELRNIALQA------------------A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV 64 (254)
T ss_pred EEEEeCeEEEe------------------c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE
Confidence 68999999876 1 35999999999999999999999999999999999998652 268999
Q ss_pred EECCeeCChhhh-cccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc---cccccccC
Q 046991 96 LVNDRPMDAEHF-RRISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH---VASSRIGG 169 (612)
Q Consensus 96 ~~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~ 169 (612)
.++|++++.... ++.++||+|++. +.+.+|+.+++.+.+... .... ..+++.++++.+||.+ ..++.++
T Consensus 65 ~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~- 139 (254)
T PRK10418 65 LLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL--GKPA--DDATLTAALEAVGLENAARVLKLYPF- 139 (254)
T ss_pred EECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc--CCCh--HHHHHHHHHHHcCCCChhhhhhcCCc-
Confidence 999998754333 357999999974 456689999987654321 1112 2367889999999976 3566665
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++
T Consensus 140 -----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~ 213 (254)
T PRK10418 140 -----EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAV 213 (254)
T ss_pred -----ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEE
Confidence 899999999999999999999999999999999999999999999997666899999999998 48889999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|+++..|+++++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 214 MSHGRIVEQGDVETLF 229 (254)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999987753
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=386.51 Aligned_cols=219 Identities=24% Similarity=0.381 Sum_probs=191.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 5 ~l~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~ 64 (510)
T PRK09700 5 YISMAGIGKSF------------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITI 64 (510)
T ss_pred eEEEeeeEEEc------------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEE
Confidence 68999999988 345799999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh---h-hhcccEEEEecCCCcCCCCCHHHHHHHHHHcc--CCC---CCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 98 NDRPMDA---E-HFRRISGYVTQDDALFPLLTVEETLMCSALLR--LTA---GRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 98 ~g~~~~~---~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~--~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
+|+++.. . ..++.++||+|++.+++.+||+||+.++.... ... .+.++..++++++++.+||.+..++.++
T Consensus 65 ~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (510)
T PRK09700 65 NNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA 144 (510)
T ss_pred CCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh
Confidence 9998743 1 23457999999999999999999998753210 001 1233455778999999999988888887
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||+++
T Consensus 145 ------~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~-~~~~~~d~v~ 216 (510)
T PRK09700 145 ------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLA-EIRRICDRYT 216 (510)
T ss_pred ------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEE
Confidence 8999999999999999999999999999999999999999999999975 4899999999998 4889999999
Q ss_pred EEcCCeEEEecChhhH
Q 046991 249 LLSNGFVVHNGTLNHL 264 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~ 264 (612)
+|++|++++.|+++++
T Consensus 217 ~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 217 VMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEECCEEeeecchhhC
Confidence 9999999999998764
No 197
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-42 Score=348.42 Aligned_cols=218 Identities=24% Similarity=0.369 Sum_probs=183.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
.|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+
T Consensus 4 ~l~~~~l~~~~------------------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 65 (251)
T PRK14249 4 KIKIRGVNFFY------------------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGA 65 (251)
T ss_pred eEEEEEEEEEE------------------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccE
Confidence 58899999888 3456999999999999999999999999999999999998762 13699
Q ss_pred EEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++.. ..+++.++|++|++.+++. |++||+.+....+. ....++..++++++++.+++.+ ..++
T Consensus 66 v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 143 (251)
T PRK14249 66 VLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG-TTAQSRLDEVVEKSLRQAALWDEVKDNLHK 143 (251)
T ss_pred EEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-CChhhHHHHHHHHHHHHhCCchhhhhHhhC
Confidence 9999988632 2456789999999998885 99999998754321 1112233456788888888753 3445
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.++|++++ + ++|||++||+++ ++.+.||
T Consensus 144 ~~~------~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~-~~~~~~d 214 (251)
T PRK14249 144 SGL------ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQ-QAARASD 214 (251)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHhhCC
Confidence 444 899999999999999999999999999999999999999999999984 3 789999999998 4889999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|++++.|+++++
T Consensus 215 ~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 215 WTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEEEEeCCeEEEeCCHHHH
Confidence 9999999999999998775
No 198
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=352.41 Aligned_cols=221 Identities=27% Similarity=0.403 Sum_probs=188.1
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cee
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVS 92 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~ 92 (612)
...|+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+
T Consensus 19 ~~~l~i~nl~~~~------------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~ 80 (276)
T PRK14271 19 APAMAAVNLTLGF------------------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS 80 (276)
T ss_pred CcEEEEeeEEEEE------------------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCc
Confidence 4578999999988 3467999999999999999999999999999999999998752 369
Q ss_pred eEEEECCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc----cc
Q 046991 93 GKLLVNDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV----AS 164 (612)
Q Consensus 93 G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~----~~ 164 (612)
|+|.++|+++.. ..+++.++|++|++.+++ .|++||+.+..... ...+.++..+++.++++.+|+.+. .+
T Consensus 81 G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~ 158 (276)
T PRK14271 81 GDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH-KLVPRKEFRGVAQARLTEVGLWDAVKDRLS 158 (276)
T ss_pred eEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCCchhhhHhh
Confidence 999999988642 345678999999998888 79999998764321 111344455667889999999753 34
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++
T Consensus 159 ~~~~------~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~ 229 (276)
T PRK14271 159 DSPF------RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARIS 229 (276)
T ss_pred CCcc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhC
Confidence 4443 8999999999999999999999999999999999999999999999864 479999999998 588999
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|+++..|+++++.
T Consensus 230 dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 230 DRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988763
No 199
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=323.95 Aligned_cols=222 Identities=32% Similarity=0.490 Sum_probs=195.7
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.++...+++.+|+. ....+|+|+|++|.+||.++++||||||||||||+++|+.+| ..|+|.
T Consensus 2 ~~l~~~~~sl~y~g----------------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~ 63 (259)
T COG4525 2 CMLNVSHLSLSYEG----------------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQ 63 (259)
T ss_pred ceeehhheEEecCC----------------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEE
Confidence 35667777777731 225699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+||++++..- ..-|.|+|++.++|.+||.||+.|+.+++ +.++.+..+++.+.+..+||++..++.+- +|
T Consensus 64 l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~--Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~------qL 133 (259)
T COG4525 64 LNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR--GIEKAQRREIAHQMLALVGLEGAEHKYIW------QL 133 (259)
T ss_pred ECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhCcccccccceE------ee
Confidence 9999986432 22489999999999999999999998765 45688888999999999999998888775 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC--Ce
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN--GF 254 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~--G~ 254 (612)
||||||||.|||||+.+|++|+||||++.||.-+++++.++|-++.++.|+.++++||+.+ |..-+++++++|+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999998 57789999999984 89
Q ss_pred EEEecChhhHHHH
Q 046991 255 VVHNGTLNHLEER 267 (612)
Q Consensus 255 iv~~G~~~~~~~~ 267 (612)
++..-+++-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777643333
No 200
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-42 Score=384.70 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=190.0
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++++ +++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.
T Consensus 10 ~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~ 69 (510)
T PRK15439 10 PLLCARSISKQY------------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLE 69 (510)
T ss_pred ceEEEEeEEEEe------------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEE
Confidence 369999999988 345699999999999999999999999999999999999976 799999
Q ss_pred ECCeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 97 VNDRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 97 ~~g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
++|+++.. .. .++.++|++|++.+++.+||+||+.+... ..++.+++++++++.+||.+..++.++
T Consensus 70 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (510)
T PRK15439 70 IGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP------KRQASMQKMKQLLAALGCQLDLDSSAG---- 139 (510)
T ss_pred ECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc------cchHHHHHHHHHHHHcCCCccccCChh----
Confidence 99998742 22 23569999999999999999999987531 122345678899999999988888887
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLP-EIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999975 4899999999998 48899999999999
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 216 G~i~~~g~~~~~ 227 (510)
T PRK15439 216 GTIALSGKTADL 227 (510)
T ss_pred CEEEEecChHHc
Confidence 999999998765
No 201
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.9e-42 Score=345.10 Aligned_cols=212 Identities=30% Similarity=0.429 Sum_probs=178.9
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.+ +++++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|
T Consensus 5 ~~~i~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i 64 (225)
T PRK10247 5 SPLLQLQNVGYLA------------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTL 64 (225)
T ss_pred CceEEEeccEEee------------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeE
Confidence 3468999999887 345699999999999999999999999999999999999876 79999
Q ss_pred EECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046991 96 LVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGS 171 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 171 (612)
.++|+++.. ..+++.++|++|++.+++. |++||+.+....+. .. ...++++++++.+|+. ...++.+.
T Consensus 65 ~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~--- 136 (225)
T PRK10247 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--QQ--PDPAIFLDDLERFALPDTILTKNIA--- 136 (225)
T ss_pred EECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC--CC--hHHHHHHHHHHHcCCChHHhcCCcc---
Confidence 999987642 3456789999999988875 99999987643321 11 1235678999999996 46677765
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. + +.||++++|+
T Consensus 137 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~ 211 (225)
T PRK10247 137 ---ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQ 211 (225)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEe
Confidence 8999999999999999999999999999999999999999999999977668899999999974 6 5799999995
Q ss_pred -CCeEEEecC
Q 046991 252 -NGFVVHNGT 260 (612)
Q Consensus 252 -~G~iv~~G~ 260 (612)
++..+.+|.
T Consensus 212 ~~~~~~~~~~ 221 (225)
T PRK10247 212 PHAGEMQEAR 221 (225)
T ss_pred cccchHhhhh
Confidence 455555554
No 202
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=380.93 Aligned_cols=221 Identities=27% Similarity=0.477 Sum_probs=190.8
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.-.++|+||+|.|+.+ .+.+||+|+||+|+|||++||+||||+||||+.++|-.+++| .+|+|
T Consensus 463 ~G~IeF~~VsFaYP~R---------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~I 525 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR---------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRI 525 (716)
T ss_pred cceEEEEEeeeecCCC---------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeE
Confidence 3469999999999643 457899999999999999999999999999999999999987 79999
Q ss_pred EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHH-----HHHHHHcCCcccccccc
Q 046991 96 LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRV-----RGLLKELGLDHVASSRI 167 (612)
Q Consensus 96 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~v 167 (612)
++||+|+. ...+|++||+|.|||.+|.. |++||+.|+.. ..+.++..+.+ .+.+ .++++-.||.|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~V 598 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVV 598 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC----CCCHHHHHHHHHHhChHHHH--HhCcccccccc
Confidence 99999974 46789999999999999998 99999998753 22343332222 2222 36678899999
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +...+||||||||++|||||++||+||||||.||+||+++...|-+.|.++.+ ++|||++.|..+ ..+.+|+|
T Consensus 599 G--EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~I 672 (716)
T KOG0058|consen 599 G--EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQI 672 (716)
T ss_pred C--CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEE
Confidence 6 45558999999999999999999999999999999999999999999999863 699999999986 57899999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 046991 248 VLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~~ 266 (612)
+++++|++++.|+.+|+.+
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999998887653
No 203
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=333.12 Aligned_cols=221 Identities=27% Similarity=0.448 Sum_probs=199.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+++++|++++| +++.+|+++|.++++|.+++|+|||||||||||.+++.+.+. ++|+|++
T Consensus 1 MI~i~nv~K~y------------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i 60 (252)
T COG4604 1 MITIENVSKSY------------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITI 60 (252)
T ss_pred CeeehhhhHhh------------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEE
Confidence 46777777766 788999999999999999999999999999999999999976 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
+|.++. .+++.+.++..-|+......+||+|-+.|+..-.-.+...++++..++++++.++|++..|+...
T Consensus 61 ~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd------ 134 (252)
T COG4604 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD------ 134 (252)
T ss_pred eeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH------
Confidence 999875 36678888999999999999999999998732111122456778889999999999999999987
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+||||||||.-||+.++++.+.++||||.++||-..+.++|+.|++++++.|+||+++.||.+. +..++|+|+-|++|+
T Consensus 135 ~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~ 213 (252)
T COG4604 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGK 213 (252)
T ss_pred hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCE
Confidence 8999999999999999999999999999999999999999999999999999999999999997 788999999999999
Q ss_pred EEEecChhhHH
Q 046991 255 VVHNGTLNHLE 265 (612)
Q Consensus 255 iv~~G~~~~~~ 265 (612)
++..|+++++.
T Consensus 214 vv~~G~~~eii 224 (252)
T COG4604 214 VVKQGSPDEII 224 (252)
T ss_pred EEecCCHHHhc
Confidence 99999999863
No 204
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.3e-42 Score=338.89 Aligned_cols=191 Identities=32% Similarity=0.480 Sum_probs=166.8
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC---h----hhhcccEEEEecCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD---A----EHFRRISGYVTQDDA 119 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~---~----~~~~~~i~yv~Q~~~ 119 (612)
+++++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++. . ...++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 346799999999999999999999999999999999999976 7999999999853 1 134678999999999
Q ss_pred cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEE
Q 046991 120 LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLI 199 (612)
Q Consensus 120 l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllL 199 (612)
+++.+|++||+.+..... .....+..++++++++.+|+++..++.+. +||||||||++||++|+.+|++|+|
T Consensus 87 ~~~~~t~~e~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYK--KLSKKEKREKKKEALEKVGLNLKLKQKIY------ELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCchhhhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999865432 12344556778999999999888888876 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
||||+|||+.++..+.+.|+++++ .|+|+|++||+++ ..+.||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999975 4889999999996 34689999875
No 205
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.1e-42 Score=344.47 Aligned_cols=206 Identities=26% Similarity=0.420 Sum_probs=176.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEEEECCeeCChhhh-cccEEEEecCCC--cCCCCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR--KVSGKLLVNDRPMDAEHF-RRISGYVTQDDA--LFPLLT 125 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I~~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~lT 125 (612)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998651 258999999998754333 357999999984 567789
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD---HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
++|++.+..... ....++..++++++++.+|+. +..++.++ .||||||||++||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~------~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL--GKLSKQARALILEALEAVGLPDPEEVLKKYPF------QLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc--CccHHHHHHHHHHHHHHcCCCchHHHHhCChh------hcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999997764322 112334456789999999997 45666665 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+++|++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999997656889999999998 588999999999999999999987763
No 206
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.4e-42 Score=370.96 Aligned_cols=229 Identities=29% Similarity=0.462 Sum_probs=199.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR--KVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I 95 (612)
.|+++||++++... .+...+++||||++++||++||+|.|||||||+.++|.|++++. ..+|+|
T Consensus 5 lL~V~nL~v~~~~~--------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I 70 (539)
T COG1123 5 LLEVENLTVEFATD--------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV 70 (539)
T ss_pred eEEEeceEEEEecC--------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE
Confidence 89999999998421 23357999999999999999999999999999999999999864 258999
Q ss_pred EECCeeCC---hh----hhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 046991 96 LVNDRPMD---AE----HFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 96 ~~~g~~~~---~~----~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
.++|+++. .+ ...+.|+|+||++ .+.|-+|+.+.+.-....+... +.++.++++.++|+.+||.+....
T Consensus 71 ~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~-~~~ea~~~a~elL~~Vgl~~~~~~- 148 (539)
T COG1123 71 ILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-SRAEARKRAVELLEQVGLPDPERR- 148 (539)
T ss_pred EECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHcCCCChhhh-
Confidence 99998753 21 2346899999997 5778799999998766554322 477888999999999999876554
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+.++++|||||||||.||+||+++|++|++||||++||+.++.+|+++|+++.++.|.++|++|||+.. +.++|||
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCe
Confidence 235569999999999999999999999999999999999999999999999999999999999999985 8999999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
+++|++|++++.|+++++.+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999754
No 207
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.2e-42 Score=393.99 Aligned_cols=219 Identities=30% Similarity=0.515 Sum_probs=187.6
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.-.++++|++|+|.. .+..+|+|+|++|++||.+||+|+||||||||+|+|+|+++| .+|+|
T Consensus 469 ~g~I~~~nvsf~y~~----------------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I 530 (709)
T COG2274 469 QGEIEFENVSFRYGP----------------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRI 530 (709)
T ss_pred CceEEEEEEEEEeCC----------------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceE
Confidence 336999999999931 234799999999999999999999999999999999999987 79999
Q ss_pred EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-------Ccccccc
Q 046991 96 LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG-------LDHVASS 165 (612)
Q Consensus 96 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~ 165 (612)
++||.+++ ...+|+++|||+||+.+|.. |++||+.++. |..+. +++.++++..| +..-.+|
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----PEATD----EEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----CCCCH----HHHHHHHHHhCcHHHHHhccccccc
Confidence 99999874 47899999999999999987 9999998752 22232 23334444433 3455678
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+| +...+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. +|+|+|+++|.++ ..+.||
T Consensus 602 ~v~--E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti~~ad 675 (709)
T COG2274 602 PVG--EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TIRSAD 675 (709)
T ss_pred ccc--cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--Hhhhcc
Confidence 885 4455899999999999999999999999999999999999999999999985 4799999999996 678999
Q ss_pred eEEEEcCCeEEEecChhhHHHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLEER 267 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~~~ 267 (612)
|+++|++|+++.+|+.+++.+.
T Consensus 676 rIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 676 RIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred EEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999997654
No 208
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-42 Score=352.34 Aligned_cols=220 Identities=24% Similarity=0.428 Sum_probs=183.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.
T Consensus 5 ~~l~~~~l~~~~~-----------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 65 (272)
T PRK15056 5 AGIVVNDVTVTWR-----------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKIS 65 (272)
T ss_pred ceEEEEeEEEEec-----------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEE
Confidence 3689999999882 235699999999999999999999999999999999999977 799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcC--CCCCHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALF--PLLTVEETLMCSALL--RLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
++|+++.....++.++|++|++.+. ...+++|++.+.... ........+..++++++++.+||.+..++.++
T Consensus 66 ~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 141 (272)
T PRK15056 66 ILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG---- 141 (272)
T ss_pred ECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 9999875332234699999997652 234789988653210 00001122344567889999999988888886
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||+++++ +
T Consensus 142 --~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~-~~~~~~d~v~~~-~ 216 (272)
T PRK15056 142 --ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLG-SVTEFCDYTVMV-K 216 (272)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEE-C
Confidence 8999999999999999999999999999999999999999999999975 4899999999997 588999999877 8
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|++++.|+++++
T Consensus 217 G~i~~~g~~~~~ 228 (272)
T PRK15056 217 GTVLASGPTETT 228 (272)
T ss_pred CEEEeecCHHhc
Confidence 999999988765
No 209
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=350.28 Aligned_cols=220 Identities=25% Similarity=0.320 Sum_probs=184.8
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~ 91 (612)
+...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.
T Consensus 17 ~~~~l~~~nl~~~~------------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~ 78 (274)
T PRK14265 17 DHSVFEVEGVKVFY------------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKV 78 (274)
T ss_pred CCceEEEeeEEEEe------------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCc
Confidence 55589999999988 3456999999999999999999999999999999999998642 25
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc----cc
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD----HV 162 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~----~~ 162 (612)
+|+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+....+. . ..+.++.+++.++.+++. +.
T Consensus 79 ~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~l~~~ 154 (274)
T PRK14265 79 EGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG--Y-KGNLDELVEDSLRRAAIWEEVKDK 154 (274)
T ss_pred CceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC--c-hHHHHHHHHHHHHHcccchhhHHH
Confidence 8999999988632 3456789999999988875 99999987643321 1 112334567788888874 33
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+. .||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++ + ++|||+++|+++ ++.+
T Consensus 155 ~~~~~~------~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~ 225 (274)
T PRK14265 155 LKEKGT------ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQ-QASR 225 (274)
T ss_pred hcCCcc------cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHH
Confidence 455544 899999999999999999999999999999999999999999999986 3 589999999998 5889
Q ss_pred ccCeEEEEc---------CCeEEEecChhhHH
Q 046991 243 LFDRLVLLS---------NGFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~---------~G~iv~~G~~~~~~ 265 (612)
+||++++|+ +|++++.|+++++.
T Consensus 226 ~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 226 VADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred hCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999997 89999999998763
No 210
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-42 Score=389.18 Aligned_cols=233 Identities=26% Similarity=0.396 Sum_probs=195.4
Q ss_pred CCCCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 8 PVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 8 ~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
||+.+-....+|+++||+++|.. ..+.+++|+||||++++||++||+||||||||||+|+|+|+++
T Consensus 2 ~~~~~~~~~~~l~v~~l~~~y~~--------------~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 2 PHSDELDARDVLAVENLNIAFMQ--------------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CCcccCCCCceEEEeceEEEecC--------------CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 44444445558999999999831 1123579999999999999999999999999999999999997
Q ss_pred CCceeeEEEECCeeC-------------Chh---hhc-ccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHH
Q 046991 88 SRKVSGKLLVNDRPM-------------DAE---HFR-RISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAAS 148 (612)
Q Consensus 88 ~~~~~G~I~~~g~~~-------------~~~---~~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~ 148 (612)
| .+|+|.++|..+ ... ..+ +.+|||+|++ .+++.+||+||+.+...... ..+.++.++
T Consensus 68 p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~ 144 (623)
T PRK10261 68 Q--AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAMV 144 (623)
T ss_pred C--CCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHH
Confidence 6 689999998643 111 122 4799999997 68889999999998765421 123555667
Q ss_pred HHHHHHHHcCCcc---cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 046991 149 RVRGLLKELGLDH---VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ 225 (612)
Q Consensus 149 ~v~~~l~~lgL~~---~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~ 225 (612)
++.++++.+||.+ ..++.+. +|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++.
T Consensus 145 ~~~~~l~~~gL~~~~~~~~~~~~------~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~ 218 (623)
T PRK10261 145 EAKRMLDQVRIPEAQTILSRYPH------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM 218 (623)
T ss_pred HHHHHHHHCCCCChhhHHhCCCc------cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc
Confidence 8999999999963 4566665 899999999999999999999999999999999999999999999998666
Q ss_pred CcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 226 GKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 226 g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
|+|||++|||++ .+.++||++++|++|+++..|+++++
T Consensus 219 g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 219 SMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred CCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHh
Confidence 899999999998 48899999999999999999998775
No 211
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-40 Score=381.05 Aligned_cols=220 Identities=30% Similarity=0.476 Sum_probs=186.5
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++|+.|+||.+ .+..||+|+|+.+++||.+||+|||||||||++++|.++++| .+|+
T Consensus 347 ~~g~ief~nV~FsYPsR---------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~ 409 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR---------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGE 409 (1228)
T ss_pred cccceEEEEEEecCCCC---------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCce
Confidence 44579999999999633 356799999999999999999999999999999999999987 7999
Q ss_pred EEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH-------cCCccccc
Q 046991 95 LLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKE-------LGLDHVAS 164 (612)
Q Consensus 95 I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~-------lgL~~~~~ 164 (612)
|++||.++.. +.+|.+||.|.|+|.+|.. |++||+.|+. +..+.+ +++++.+. ..|.+-.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~----~dat~~----~i~~a~k~ana~~fi~~lp~g~~ 480 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGK----PDATRE----EIEEAAKAANAHDFILKLPDGYD 480 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCC----CcccHH----HHHHHHHHccHHHHHHhhHHhhc
Confidence 9999998753 6788999999999988875 9999999852 222232 33333333 34556778
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
|.+|+ ...+||||||||++|||||+.||+|||||||||+||+.+...+.+.|.+.. .|+|.|+++|+++ .+. .+
T Consensus 481 T~vge--~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLS-tIr-na 554 (1228)
T KOG0055|consen 481 TLVGE--RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLS-TIR-NA 554 (1228)
T ss_pred ccccC--CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehh-hhh-cc
Confidence 99973 233699999999999999999999999999999999999999999999874 4889999999998 354 59
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++++|++|++++.|+.+|+.+
T Consensus 555 D~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 555 DKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred CEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999754
No 212
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.6e-42 Score=347.97 Aligned_cols=214 Identities=26% Similarity=0.518 Sum_probs=173.6
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~l~~~~~----------------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~ 62 (237)
T cd03252 1 ITFEHVRFRYK----------------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVD 62 (237)
T ss_pred CEEEEEEEecC----------------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEEC
Confidence 46889988772 1235699999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHc--CCccccccccc
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAA-----SRVRGLLKEL--GLDHVASSRIG 168 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg 168 (612)
|+++.. ..+++.++|++|++.+++ .||+||+.+... ........ ....++++.+ +++...+..+.
T Consensus 63 g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (237)
T cd03252 63 GHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137 (237)
T ss_pred CeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCC
Confidence 987642 345678999999998875 699999976421 11111111 1123444444 44444444444
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++. + +.||+++
T Consensus 138 ------~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~-~-~~~d~v~ 207 (237)
T cd03252 138 ------GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLST-V-KNADRII 207 (237)
T ss_pred ------cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-H-HhCCEEE
Confidence 899999999999999999999999999999999999999999999985 4 8999999999974 6 5699999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++++.|+++++.
T Consensus 208 ~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 208 VMEKGRIVEQGSHDELL 224 (237)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999987754
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=355.81 Aligned_cols=230 Identities=22% Similarity=0.337 Sum_probs=190.6
Q ss_pred CCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---
Q 046991 12 SRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS--- 88 (612)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~--- 88 (612)
.++....|+++|+++++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|+.++
T Consensus 74 ~~~~~~~i~~~nls~~y~~----------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~ 137 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMN----------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG 137 (329)
T ss_pred CCCcCceEEEEeeEEEecC----------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC
Confidence 3455668999999998831 235699999999999999999999999999999999999853
Q ss_pred CceeeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCC-HHHHHHHHHHHHHHcCCccc
Q 046991 89 RKVSGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGR-RKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 89 ~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~-~~~~~~~v~~~l~~lgL~~~ 162 (612)
.+.+|+|.+||+++.. ..+++.++||||++.+++ .|++||+.|+.... ... ++...+.++++++.++|.+.
T Consensus 138 ~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~ 214 (329)
T PRK14257 138 TSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDE 214 (329)
T ss_pred CCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcch
Confidence 1368999999998742 346788999999999886 69999999865321 112 22234557888999988543
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.++.+ +.....||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+
T Consensus 215 l~~~~--~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~ 289 (329)
T PRK14257 215 VKDDL--DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQR 289 (329)
T ss_pred hhhhh--hCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHH
Confidence 33333 233458999999999999999999999999999999999999999999999863 589999999998 4888
Q ss_pred ccCeEEEEcCCeEEEecChhhHH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
.||++++|++|+++..|+++++.
T Consensus 290 ~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 290 ISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999998874
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.5e-41 Score=343.96 Aligned_cols=224 Identities=25% Similarity=0.313 Sum_probs=184.2
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+....+.+|+|
T Consensus 5 ~~~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i 66 (252)
T CHL00131 5 KPILEIKNLHASV------------------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI 66 (252)
T ss_pred CceEEEEeEEEEe------------------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE
Confidence 3469999999888 3356999999999999999999999999999999999983111379999
Q ss_pred EECCeeCCh---hhhcc-cEEEEecCCCcCCCCCHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHHHcCCc-ccccc
Q 046991 96 LVNDRPMDA---EHFRR-ISGYVTQDDALFPLLTVEETLMCSALLRL-----TAGRRKQAASRVRGLLKELGLD-HVASS 165 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~-~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-----~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 165 (612)
.++|+++.. ...++ .++|++|++.+++.+|+.|++.+...... ......+..+++.++++.+|+. +..++
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 146 (252)
T CHL00131 67 LFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR 146 (252)
T ss_pred EECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc
Confidence 999998743 22233 48899999999999999999987543211 0011223346788999999997 45666
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc-c
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL-F 244 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~ 244 (612)
.++ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +... +
T Consensus 147 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~~ 219 (252)
T CHL00131 147 NVN-----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIKP 219 (252)
T ss_pred ccc-----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhhC
Confidence 664 14999999999999999999999999999999999999999999999975 58899999999974 6665 8
Q ss_pred CeEEEEcCCeEEEecChhhH
Q 046991 245 DRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~ 264 (612)
|++++|++|++++.|+++.+
T Consensus 220 d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 220 DYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred CEEEEEeCCEEEEecChhhh
Confidence 99999999999999988743
No 215
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=348.38 Aligned_cols=217 Identities=25% Similarity=0.358 Sum_probs=183.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
+|+++|+++.+ +++++|+|+|+++++||+++|+||||||||||+|+|+|+.++. +.+|+
T Consensus 10 ~l~i~~v~~~~------------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 71 (264)
T PRK14243 10 VLRTENLNVYY------------------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK 71 (264)
T ss_pred EEEEeeeEEEE------------------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceE
Confidence 69999999988 3356999999999999999999999999999999999997531 26899
Q ss_pred EEECCeeCC-----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 046991 95 LLVNDRPMD-----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VASS 165 (612)
Q Consensus 95 I~~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 165 (612)
|.++|+++. ...+++.++|++|++.+++. ||.||+.+..... .. ..+..++++++++.+++.+ ..++
T Consensus 72 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~ 147 (264)
T PRK14243 72 VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN--GY-KGDMDELVERSLRQAALWDEVKDKLKQ 147 (264)
T ss_pred EEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc--Cc-chHHHHHHHHHHHHhCchhhHHHHhcC
Confidence 999998863 23456789999999988884 9999998865332 11 1233456777888888743 3444
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||
T Consensus 148 ~~~------~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d 218 (264)
T PRK14243 148 SGL------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSD 218 (264)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCC
Confidence 444 8999999999999999999999999999999999999999999999964 479999999998 5899999
Q ss_pred eEEEEc---------CCeEEEecChhhHH
Q 046991 246 RLVLLS---------NGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~---------~G~iv~~G~~~~~~ 265 (612)
++++|+ +|++++.|+++++.
T Consensus 219 ~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 219 MTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999998 79999999988764
No 216
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=387.86 Aligned_cols=232 Identities=26% Similarity=0.335 Sum_probs=194.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||++.|..+... .....+.+.+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.
T Consensus 312 ~~L~~~~l~~~y~~~~~~-------~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~ 382 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGL-------LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEII 382 (623)
T ss_pred ceEEEeeeEEEEcCCCcc-------ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEE
Confidence 469999999988311000 00001235699999999999999999999999999999999999976 799999
Q ss_pred ECCeeCCh------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 97 VNDRPMDA------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 97 ~~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
++|+++.. ..+++.++||+|++ .+++.+||.|++.+...... ...+++..+++.++++.+||. +..++.+
T Consensus 383 ~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred ECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 99998642 12467899999997 58899999999987653321 112344567899999999996 5678877
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
+ +|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++ .+.++||++
T Consensus 462 ~------~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri 534 (623)
T PRK10261 462 H------EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRV 534 (623)
T ss_pred c------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 6 899999999999999999999999999999999999999999999998766899999999998 488999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|++++.|+++++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988763
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.3e-42 Score=369.50 Aligned_cols=234 Identities=29% Similarity=0.430 Sum_probs=200.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++||++.|..+...+ ....+...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~-------~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~ 347 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLF-------VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGS 347 (539)
T ss_pred cCceeEeeeeeeeeccccccc-------cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCce
Confidence 456799999999996432100 0112456799999999999999999999999999999999999987 7999
Q ss_pred EEECCeeC--Ch---hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 046991 95 LLVNDRPM--DA---EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSR 166 (612)
Q Consensus 95 I~~~g~~~--~~---~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 166 (612)
|.++|.+. +. ...++.+-+|+||+ .+.|.+||++++.......... ...+.++++.++++.+||.+ ..+++
T Consensus 348 i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~-~~~~~~~rv~~ll~~VgL~~~~l~ry 426 (539)
T COG1123 348 IIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG-SGAERRARVAELLELVGLPPEFLDRY 426 (539)
T ss_pred EEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc-chHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 99999873 21 34567788888886 6899999999998776543322 35666778999999999986 56776
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+. +||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++.|.|.|++|||+.. +..+|||
T Consensus 427 P~------elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~dr 499 (539)
T COG1123 427 PH------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADR 499 (539)
T ss_pred ch------hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCce
Confidence 65 9999999999999999999999999999999999999999999999999999999999999985 8999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
|++|++|++++.|+.+++.
T Consensus 500 v~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 500 VAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEEECCeEEEeCCHHHHh
Confidence 9999999999999887754
No 218
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9e-42 Score=380.31 Aligned_cols=220 Identities=24% Similarity=0.409 Sum_probs=188.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+.+|+|.++
T Consensus 2 l~i~~l~~~~------------------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~ 63 (500)
T TIGR02633 2 LEMKGIVKTF------------------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWS 63 (500)
T ss_pred EEEEeEEEEe------------------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 7899999888 3456999999999999999999999999999999999998653368999999
Q ss_pred CeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCcccc-cccccCCC
Q 046991 99 DRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA--GRRKQAASRVRGLLKELGLDHVA-SSRIGGGS 171 (612)
Q Consensus 99 g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~--~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~ 171 (612)
|+++.. ...++.++||+|++.+++.+||+||+.+........ ...++..++++++++.+||.+.. ++.++
T Consensus 64 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 140 (500)
T TIGR02633 64 GSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG--- 140 (500)
T ss_pred CEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh---
Confidence 998743 123467999999999999999999998864322111 12344556789999999998654 46565
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|+
T Consensus 141 ---~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~-~~~~~~d~i~~l~ 215 (500)
T TIGR02633 141 ---DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLN-EVKAVCDTICVIR 215 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-HHHHhCCEEEEEe
Confidence 8999999999999999999999999999999999999999999999975 5899999999998 5889999999999
Q ss_pred CCeEEEecChhhH
Q 046991 252 NGFVVHNGTLNHL 264 (612)
Q Consensus 252 ~G~iv~~G~~~~~ 264 (612)
+|+++..|++++.
T Consensus 216 ~G~i~~~~~~~~~ 228 (500)
T TIGR02633 216 DGQHVATKDMSTM 228 (500)
T ss_pred CCeEeeecCcccC
Confidence 9999999887653
No 219
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=346.18 Aligned_cols=231 Identities=23% Similarity=0.330 Sum_probs=191.5
Q ss_pred CCCCCCCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046991 5 VRAPVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G 84 (612)
.+.|.-...+....|+++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~l~~~~------------------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 3 IFKPAGDVSPTQQKSEVNKLNFYY------------------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred ccccCCCccCCCceEEEEEEEEEE------------------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345555555667789999999988 34569999999999999999999999999999999999
Q ss_pred CCCCCc---eeeEEEECCeeCC-------hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 046991 85 KISSRK---VSGKLLVNDRPMD-------AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLL 154 (612)
Q Consensus 85 ~~~~~~---~~G~I~~~g~~~~-------~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l 154 (612)
+.+|.+ .+|+|.++|+++. ...+++.++|++|++.+++. ||+||+.+...... .......++++++++
T Consensus 65 l~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l 142 (265)
T PRK14252 65 MHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG-VKRRSILEERVENAL 142 (265)
T ss_pred ccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC-CChHHHHHHHHHHHH
Confidence 986422 6899999997653 12456789999999999886 99999987643221 111223346688888
Q ss_pred HHcCCc----ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 046991 155 KELGLD----HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTII 230 (612)
Q Consensus 155 ~~lgL~----~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii 230 (612)
+.+++. +..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||
T Consensus 143 ~~~~l~~~l~~~~~~~~~------~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tii 214 (265)
T PRK14252 143 RNAALWDEVKDRLGDLAF------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTIL 214 (265)
T ss_pred HHcCCchhhhHHHhCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEE
Confidence 888874 33445554 8999999999999999999999999999999999999999999999864 58999
Q ss_pred EEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 231 LTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 231 ~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
++||+++ ++.++||++++|++|+++..|+.+++
T Consensus 215 ivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 215 IVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred EEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999998 58899999999999999999998765
No 220
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=343.91 Aligned_cols=219 Identities=25% Similarity=0.389 Sum_probs=185.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceee
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G 93 (612)
+.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|
T Consensus 2 ~~l~~~~v~~~~------------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 63 (250)
T PRK14266 2 YRIEVENLNTYF------------------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG 63 (250)
T ss_pred cEEEEEeEEEEe------------------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCcc
Confidence 468899999887 3456999999999999999999999999999999999986421 2689
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH----VAS 164 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~----~~~ 164 (612)
+|.+||+++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++++.++++.+|+.+ ..+
T Consensus 64 ~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 141 (250)
T PRK14266 64 HIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG-EDDEDFIEERVEESLKAAALWDEVKDKLD 141 (250)
T ss_pred EEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-CCCHHHHHHHHHHHHHHcCCchhHHHHHh
Confidence 99999998642 2456789999999998885 99999987643211 1123345677889999999853 334
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+
T Consensus 142 ~~~~------~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~~~ 212 (250)
T PRK14266 142 KSAL------GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQ-QATRVS 212 (250)
T ss_pred CCcc------cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHH-HHHhhc
Confidence 4444 899999999999999999999999999999999999999999999985 3 689999999998 589999
Q ss_pred CeEEEEcCCeEEEecChhhH
Q 046991 245 DRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~ 264 (612)
|++++|++|++++.|+++++
T Consensus 213 ~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 213 KYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred CEEEEEECCeEEEeCCHHHH
Confidence 99999999999999998875
No 221
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-41 Score=338.36 Aligned_cols=205 Identities=22% Similarity=0.310 Sum_probs=179.2
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+...|+++|+++++ +++.+++++|+++++||+++|+||||||||||+++|+|+.++ .+|+
T Consensus 8 ~~~~l~~~~l~~~~------------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~ 67 (214)
T PRK13543 8 APPLLAAHALAFSR------------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQ 67 (214)
T ss_pred CcceEEEeeEEEec------------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCee
Confidence 34579999999887 345699999999999999999999999999999999999977 7899
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|.++|+++.....++.++|++|++.+++.+|++||+.+....+ . . ...++++++++.++|.+..++.++
T Consensus 68 i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~-~--~~~~~~~~~l~~~~l~~~~~~~~~------ 136 (214)
T PRK13543 68 IQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH--G-R--RAKQMPGSALAIVGLAGYEDTLVR------ 136 (214)
T ss_pred EEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc--C-C--cHHHHHHHHHHHcCChhhccCChh------
Confidence 9999998764344567999999999999999999998865432 1 1 123467889999999988888876
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+++|++++++.
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChh-hhhhhcceEEEEee
Confidence 8999999999999999999999999999999999999999999999875 4789999999998 58999999999863
No 222
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=345.48 Aligned_cols=221 Identities=28% Similarity=0.404 Sum_probs=185.3
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+
T Consensus 7 ~~~~i~~~~~~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~ 66 (257)
T PRK14246 7 AEDVFNISRLYLYI------------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSK 66 (257)
T ss_pred hhhheeeeeEEEec------------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCc
Confidence 34568999999887 456799999999999999999999999999999999999876 4554
Q ss_pred E------EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----
Q 046991 95 L------LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH---- 161 (612)
Q Consensus 95 I------~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~---- 161 (612)
| .++|+++. ....++.++|++|++.+++.+|++||+.+...... ...+++..++++++++.+|+.+
T Consensus 67 v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (257)
T PRK14246 67 IKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG-IKEKREIKKIVEECLRKVGLWKEVYD 145 (257)
T ss_pred eeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCCccchh
Confidence 4 45455542 23457789999999999999999999998753321 1123455577899999999964
Q ss_pred cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH
Q 046991 162 VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL 241 (612)
Q Consensus 162 ~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 241 (612)
..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.
T Consensus 146 ~~~~~~~------~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~-~~~ 216 (257)
T PRK14246 146 RLNSPAS------QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQ-QVA 216 (257)
T ss_pred hhcCCcc------cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHH-HHH
Confidence 3445444 899999999999999999999999999999999999999999999985 3 589999999997 488
Q ss_pred hccCeEEEEcCCeEEEecChhhHH
Q 046991 242 ELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 242 ~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
++||++++|++|+++..|+.+++.
T Consensus 217 ~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 217 RVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999987654
No 223
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.2e-42 Score=391.28 Aligned_cols=214 Identities=25% Similarity=0.403 Sum_probs=183.0
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|+++.+. +++++|+|+|+++++||.+||+||||||||||+++|+|++ | .+|+|.
T Consensus 348 ~~i~~~~vsf~~~-----------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~ 407 (588)
T PRK11174 348 VTIEAEDLEILSP-----------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLK 407 (588)
T ss_pred ceEEEEeeEEecc-----------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEE
Confidence 3699999997652 3357999999999999999999999999999999999999 6 589999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------ccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ 166 (612)
+||+++. .+.+|+.++||+|++.+|+. |++||+.++. +..++ ++++++++..++.+ -.||.
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----PDASD----EQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----CCCCH----HHHHHHHHHhCHHHHHHhcccccccc
Confidence 9999874 46788999999999999987 9999998752 21222 44556666666543 45788
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+|+ ....||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. .++|+|+++|+++ ..+.||+
T Consensus 479 vge--~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~--~i~~aD~ 552 (588)
T PRK11174 479 IGD--QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLE--DLAQWDQ 552 (588)
T ss_pred ccc--CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChH--HHHhCCE
Confidence 863 345799999999999999999999999999999999999999999999885 4789999999996 4678999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
|++|++|+++..|+.+++.
T Consensus 553 Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 553 IWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred EEEEeCCeEeecCCHHHHH
Confidence 9999999999999988874
No 224
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-43 Score=322.12 Aligned_cols=210 Identities=26% Similarity=0.453 Sum_probs=188.7
Q ss_pred cccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC-------------h---hhh
Q 046991 44 SKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD-------------A---EHF 107 (612)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~-------------~---~~~ 107 (612)
|+++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+| ..|.|.+||+.+. . +.+
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 445888999999999999999999999999999999999999977 7999999998752 1 235
Q ss_pred cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHH
Q 046991 108 RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIG 187 (612)
Q Consensus 108 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia 187 (612)
|.+.|+|+|+.+++..+||.||+.-+.. ..-+.++.+..++++.+|+.+|+.+..+.++. .|||||+||++||
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~------~LSGGQQQR~aIA 164 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPV-HVLGVSKAEAIERAEKYLAKVGIAEKADAYPA------HLSGGQQQRVAIA 164 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcch-HhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc------ccCchHHHHHHHH
Confidence 6678999999999999999999976532 22223678889999999999999998887776 8999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 188 VDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 188 ~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
|||+.+|+++++|||||+|||.-.-++++.++++|++ |+|.+++||.+.. ..+...+|+.|++|.+-++|+|+++
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH-HHhhhhheEEeecceecccCChHHH
Confidence 9999999999999999999999999999999999964 9999999999996 7889999999999999999999876
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=344.78 Aligned_cols=224 Identities=24% Similarity=0.340 Sum_probs=186.6
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~ 91 (612)
....+.++++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. +.
T Consensus 5 ~~~~~~~~~~~~~~------------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~ 66 (261)
T PRK14263 5 APIVMDCKLDKIFY------------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF 66 (261)
T ss_pred CCceEEEEeEEEEe------------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCC
Confidence 45678888888777 4567999999999999999999999999999999999998752 26
Q ss_pred eeEEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 046991 92 SGKLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 92 ~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
+|+|.++|+++.. ..+++.++|++|++.++ .+|+.||+.+...... ..++..++++++++.+++.+..+..
T Consensus 67 ~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~i~~~ 142 (261)
T PRK14263 67 EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YKGDLGDRVKHALQGAALWDEVKDK 142 (261)
T ss_pred ceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---chHHHHHHHHHHHHHcCCchhhhhh
Confidence 8999999998632 24567899999999887 5899999998754321 1223456789999999986533222
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
. +...+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||+
T Consensus 143 ~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 143 L--KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred h--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCE
Confidence 2 12334899999999999999999999999999999999999999999999985 3 689999999998 58899999
Q ss_pred EEEEc--------CCeEEEecChhhHH
Q 046991 247 LVLLS--------NGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~--------~G~iv~~G~~~~~~ 265 (612)
+++|+ +|+++..|+.+++.
T Consensus 218 v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 218 TAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEEecccccccCCceEEEeCCHHHHH
Confidence 99996 89999999987753
No 226
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-42 Score=344.88 Aligned_cols=215 Identities=32% Similarity=0.514 Sum_probs=176.1
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+. ..++.+++|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~l~~~~~----------------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~ 62 (234)
T cd03251 1 VEFKNVTFRYP----------------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILID 62 (234)
T ss_pred CEEEEEEEEeC----------------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEEC
Confidence 46889998872 0123699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHc--CCccccccccc
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAA-----SRVRGLLKEL--GLDHVASSRIG 168 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg 168 (612)
|+++.. ...++.++|++|++.+++ .||+||+.+.... ....+.. ..+++.++.+ ++.+..+..+.
T Consensus 63 g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 137 (234)
T cd03251 63 GHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGV 137 (234)
T ss_pred CEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCC
Confidence 987642 345678999999998887 5999999865321 1111111 1245556665 56655555554
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.. ||+++
T Consensus 138 ------~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~ 207 (234)
T cd03251 138 ------KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIV 207 (234)
T ss_pred ------cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEE
Confidence 899999999999999999999999999999999999999999999985 3 789999999997 4654 99999
Q ss_pred EEcCCeEEEecChhhHHH
Q 046991 249 LLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~~ 266 (612)
+|++|+++..|+++++.+
T Consensus 208 ~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 208 VLEDGKIVERGTHEELLA 225 (234)
T ss_pred EecCCeEeeeCCHHHHHH
Confidence 999999999998877643
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.5e-41 Score=380.79 Aligned_cols=233 Identities=25% Similarity=0.377 Sum_probs=191.8
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
..+|+++|+++.|..... ....+.+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|
T Consensus 273 ~~~l~~~~l~~~~~~~~~-------~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i 342 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKG-------ILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEI 342 (529)
T ss_pred CCcccccCcEEEeecCcc-------ccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEE
Confidence 346999999998831000 00000123579999999999999999999999999999999999983 58999
Q ss_pred EECCeeCCh---h---hhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 046991 96 LVNDRPMDA---E---HFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSR 166 (612)
Q Consensus 96 ~~~g~~~~~---~---~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 166 (612)
+++|+++.. . .+++.++|++|++ .+++.+||+||+.+.........+.++.+++++++++.+||. +..++.
T Consensus 343 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 422 (529)
T PRK15134 343 WFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY 422 (529)
T ss_pred EECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 999987642 1 2356799999997 478889999999886533211112344557789999999997 467887
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++.|+|||++|||++ ++.++||+
T Consensus 423 ~~------~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~ 495 (529)
T PRK15134 423 PA------EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQ 495 (529)
T ss_pred Cc------cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCe
Confidence 76 899999999999999999999999999999999999999999999998766899999999998 48899999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|+++..|+++++.
T Consensus 496 i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 496 VIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEEECCEEEEEcCHHHHh
Confidence 9999999999999987763
No 228
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-41 Score=335.02 Aligned_cols=200 Identities=27% Similarity=0.390 Sum_probs=173.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~------------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~ 60 (204)
T PRK13538 1 MLEARNLACER------------------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLW 60 (204)
T ss_pred CeEEEEEEEEE------------------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 47889999887 345699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+|+++.. ...++.++|++|++.+++.+|+.||+.+..... . . +..++++++++.+||.+..++.+. .
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~--~-~~~~~~~~~l~~~gl~~~~~~~~~------~ 129 (204)
T PRK13538 61 QGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH--G--P-GDDEALWEALAQVGLAGFEDVPVR------Q 129 (204)
T ss_pred CCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc--C--c-cHHHHHHHHHHHcCCHHHhhCChh------h
Confidence 9998642 345678999999999999999999998875432 1 1 234678899999999988888776 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +....+|++++
T Consensus 130 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999999999999999999999875 47899999999984 76666677666
No 229
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-41 Score=379.21 Aligned_cols=221 Identities=30% Similarity=0.436 Sum_probs=189.0
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCceeeEEE
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI--SSRKVSGKLL 96 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~--~~~~~~G~I~ 96 (612)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +| .+|+|.
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~ 60 (520)
T TIGR03269 1 IEVKNLTKKF------------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRII 60 (520)
T ss_pred CEEEEEEEEE------------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEE
Confidence 4788999887 3467999999999999999999999999999999999997 34 789999
Q ss_pred EC-----------------------CeeC----------Ch---hhhcccEEEEecC-CCcCCCCCHHHHHHHHHHccCC
Q 046991 97 VN-----------------------DRPM----------DA---EHFRRISGYVTQD-DALFPLLTVEETLMCSALLRLT 139 (612)
Q Consensus 97 ~~-----------------------g~~~----------~~---~~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~ 139 (612)
++ |.++ .. ..+++.++|++|+ +.+++.+||+||+.+.....
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-- 138 (520)
T TIGR03269 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-- 138 (520)
T ss_pred EeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc--
Confidence 97 2221 01 1245679999997 67888899999999865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 046991 140 AGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLK 219 (612)
Q Consensus 140 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 219 (612)
..+.++.++++.++++.+||++..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..++++|+
T Consensus 139 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 212 (520)
T TIGR03269 139 GYEGKEAVGRAVDLIEMVQLSHRITHIAR------DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALE 212 (520)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcCcc------cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHH
Confidence 12344556789999999999988888776 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHH
Q 046991 220 SMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERL 268 (612)
Q Consensus 220 ~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 268 (612)
+++++.|+|||++|||++. +.++||++++|++|++++.|+++++.+.+
T Consensus 213 ~l~~~~g~tviivtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 213 EAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9976668999999999984 88899999999999999999988775543
No 230
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=377.44 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=188.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 4 ~l~~~~l~~~~------------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~ 63 (501)
T PRK11288 4 YLSFDGIGKTF------------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILI 63 (501)
T ss_pred eEEEeeeEEEE------------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEE
Confidence 68999999988 345699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA-GRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++.. ..+++.++||+|++.+++.+||+||+.++....... ...++.+++++++++.+||.+..++.++
T Consensus 64 ~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (501)
T PRK11288 64 DGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK---- 139 (501)
T ss_pred CCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh----
Confidence 9998742 235678999999999999999999998853211111 1234456778999999999877788776
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~-~~~~~~d~i~~l~~ 215 (501)
T PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRME-EIFALCDAITVFKD 215 (501)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999975 5899999999998 58899999999999
Q ss_pred CeEEEecCh
Q 046991 253 GFVVHNGTL 261 (612)
Q Consensus 253 G~iv~~G~~ 261 (612)
|+++..++.
T Consensus 216 G~i~~~~~~ 224 (501)
T PRK11288 216 GRYVATFDD 224 (501)
T ss_pred CEEEeecCc
Confidence 999877653
No 231
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-41 Score=414.71 Aligned_cols=226 Identities=28% Similarity=0.404 Sum_probs=202.3
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.-.|+++||+++|. .+++.+|+|||+.+++||++||+||||||||||+|+|+|..+| ++|+|
T Consensus 1935 ~~~L~v~nLsK~Y~----------------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I 1996 (2272)
T TIGR01257 1935 TDILRLNELTKVYS----------------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDA 1996 (2272)
T ss_pred CceEEEEEEEEEEC----------------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEE
Confidence 34699999999882 0236799999999999999999999999999999999999977 79999
Q ss_pred EECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 96 LVNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
.++|+++.. .+.++.+||++|++.+++.+||+|++.+.++++. .++++.+++++++++.+||.+.+|++++
T Consensus 1997 ~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g--~~~~~~~~~v~~lLe~lgL~~~~dk~~~----- 2069 (2272)
T TIGR01257 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG--VPAEEIEKVANWSIQSLGLSLYADRLAG----- 2069 (2272)
T ss_pred EECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCHHHhcCChh-----
Confidence 999998742 3456789999999999999999999998776542 2344556778999999999999999987
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+||||||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++..+|||+++|++|
T Consensus 2070 -~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me-e~e~lcDrV~IL~~G 2146 (2272)
T TIGR01257 2070 -TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME-ECEALCTRLAIMVKG 2146 (2272)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999754 899999999998 699999999999999
Q ss_pred eEEEecChhhHHHHHH
Q 046991 254 FVVHNGTLNHLEERLK 269 (612)
Q Consensus 254 ~iv~~G~~~~~~~~f~ 269 (612)
+++..|+++++.+.+.
T Consensus 2147 ~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2147 AFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEEECCHHHHHHHhC
Confidence 9999999999987775
No 232
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.8e-41 Score=330.37 Aligned_cols=191 Identities=55% Similarity=0.874 Sum_probs=166.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCceeeE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI--SSRKVSGK 94 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~--~~~~~~G~ 94 (612)
+.|+++|+++.++.. .+...+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+
T Consensus 2 ~~l~~~~ls~~~~~~------------~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~ 67 (194)
T cd03213 2 VTLSFRNLTVTVKSS------------PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGE 67 (194)
T ss_pred cEEEEEeeEEEEecC------------CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceE
Confidence 458999999998310 0011367999999999999999999999999999999999998 76 7999
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|.++|+++.....++.++|++|++.+++.+|++||+.+...+ .
T Consensus 68 i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------~----------------------- 110 (194)
T cd03213 68 VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------R----------------------- 110 (194)
T ss_pred EEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--------------c-----------------------
Confidence 999999886555677899999999999999999999764210 0
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|+++.++.+.+|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 3999999999999999999999999999999999999999999999875 489999999999745788999999999999
Q ss_pred EEEec
Q 046991 255 VVHNG 259 (612)
Q Consensus 255 iv~~G 259 (612)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98764
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-41 Score=329.90 Aligned_cols=190 Identities=46% Similarity=0.759 Sum_probs=164.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.++. ...++++|+|+|+++++||+++|+||||||||||+++|+|+.++.+.+|+|.
T Consensus 2 ~~l~~~~l~~~~~~--------------~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~ 67 (192)
T cd03232 2 SVLTWKNLNYTVPV--------------KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL 67 (192)
T ss_pred cEEEEeeeEEEecC--------------CCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Confidence 36899999998831 0112569999999999999999999999999999999999864224799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
++|+++. ..+++.++|++|++.+++.+|++||+.+...+ + +|
T Consensus 68 ~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------------~-------------------~L 109 (192)
T cd03232 68 INGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL------------------R-------------------GL 109 (192)
T ss_pred ECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH------------------h-------------------cC
Confidence 9999875 45667899999999999999999999864210 0 39
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC-CeE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN-GFV 255 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~-G~i 255 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++.++.+.||++++|++ |++
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999999875 4899999999997336789999999999 999
Q ss_pred EEec
Q 046991 256 VHNG 259 (612)
Q Consensus 256 v~~G 259 (612)
++.|
T Consensus 189 ~~~g 192 (192)
T cd03232 189 VYFG 192 (192)
T ss_pred EeCC
Confidence 9865
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3e-41 Score=377.73 Aligned_cols=226 Identities=29% Similarity=0.409 Sum_probs=190.4
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
..+|+++|+++.|... +.+.+.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|
T Consensus 277 ~~~l~~~~l~~~~~~~-------------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i 341 (520)
T TIGR03269 277 EPIIKVRNVSKRYISV-------------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEV 341 (520)
T ss_pred CceEEEeccEEEeccC-------------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEE
Confidence 3479999999988310 01235699999999999999999999999999999999999976 79999
Q ss_pred EEC-Cee---CCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc----
Q 046991 96 LVN-DRP---MDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH---- 161 (612)
Q Consensus 96 ~~~-g~~---~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~---- 161 (612)
.++ |.+ +.. ...++.++|++|++.+++.+||+||+.+...+. .+.++.+++++++++.+||.+
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~ 418 (520)
T TIGR03269 342 NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE---LPDELARMKAVITLKMVGFDEEKAE 418 (520)
T ss_pred EEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCCCCccch
Confidence 996 542 211 124567999999999999999999998764322 123334567889999999975
Q ss_pred -cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHH
Q 046991 162 -VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRI 240 (612)
Q Consensus 162 -~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i 240 (612)
..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++ .+
T Consensus 419 ~~~~~~~~------~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~ 491 (520)
T TIGR03269 419 EILDKYPD------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FV 491 (520)
T ss_pred hhhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HH
Confidence 4577776 899999999999999999999999999999999999999999999998666899999999998 58
Q ss_pred HhccCeEEEEcCCeEEEecChhhHHH
Q 046991 241 LELFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 241 ~~~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
.++||++++|++|+++..|+++++.+
T Consensus 492 ~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 492 LDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 89999999999999999999877643
No 235
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.1e-41 Score=343.73 Aligned_cols=217 Identities=29% Similarity=0.470 Sum_probs=172.5
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+. +.+++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~i~~l~~~~~---------------~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~ 63 (238)
T cd03249 1 IEFKNVSFRYP---------------SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLD 63 (238)
T ss_pred CeEEEEEEecC---------------CCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEEC
Confidence 46889988772 11235699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHH-----HHHHHHHHc--CCccccccccc
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAAS-----RVRGLLKEL--GLDHVASSRIG 168 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg 168 (612)
|+++.. ...++.++|++|++.+++ .||+||+.+..... ..++..+ .+.+.++.+ ++....++.+
T Consensus 64 g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 137 (238)
T cd03249 64 GVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERG- 137 (238)
T ss_pred CEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC----CHHHHHHHHHHcChHHHHHhhccccceeeccCC-
Confidence 988642 344567999999998886 59999998642211 1111111 122233333 3433344443
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ .|+|||++||+++ ++. .||+++
T Consensus 138 -----~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~ 208 (238)
T cd03249 138 -----SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIA 208 (238)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEE
Confidence 4899999999999999999999999999999999999999999999985 4899999999997 464 899999
Q ss_pred EEcCCeEEEecChhhHHHH
Q 046991 249 LLSNGFVVHNGTLNHLEER 267 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~~~ 267 (612)
+|++|++++.|+.+++.++
T Consensus 209 ~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 209 VLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEECCEEEEeCCHHHHhhc
Confidence 9999999999988776443
No 236
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=376.67 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=181.2
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCCCcCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDDALFP 122 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~ 122 (612)
+++++|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.. ...++.++|++|++.+++
T Consensus 9 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 446799999999999999999999999999999999999976 79999999998742 234567999999999999
Q ss_pred CCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 123 LLTVEETLMCSALLRLTA-GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
.+||+||+.+........ ...++..++++++++.+|+.+..++.++ +|||||||||+||++|+.+|++|||||
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA------TLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh------hCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 999999998753211010 1233445678999999999888888876 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++..|++++.
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999975 5889999999998 58899999999999999999987764
No 237
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.5e-41 Score=377.01 Aligned_cols=225 Identities=25% Similarity=0.379 Sum_probs=189.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ceeeE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KVSGK 94 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~~G~ 94 (612)
+|+++|++++|.. ..+.+.+|+|+||++++||++||+||||||||||+|+|+|+++|. +.+|+
T Consensus 5 ~l~~~~l~~~~~~--------------~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~ 70 (529)
T PRK15134 5 LLAIENLSVAFRQ--------------QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGD 70 (529)
T ss_pred eEEEeceEEEecC--------------CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceE
Confidence 6899999998831 012357999999999999999999999999999999999999752 26899
Q ss_pred EEECCeeCCh---h---hhc-ccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc---c
Q 046991 95 LLVNDRPMDA---E---HFR-RISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH---V 162 (612)
Q Consensus 95 I~~~g~~~~~---~---~~~-~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~---~ 162 (612)
|.++|+++.. . ..+ +.+||++|++. +++.+|++|++.+...... ..+..+..++++++++.+||.+ .
T Consensus 71 i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (529)
T PRK15134 71 IRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR-GMRREAARGEILNCLDRVGIRQAAKR 149 (529)
T ss_pred EEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHCCCCChHHH
Confidence 9999998642 1 122 57999999974 6777899999876543211 1234456678999999999975 3
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.+++++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++|||++ .+.+
T Consensus 150 ~~~~~~------~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~ 222 (529)
T PRK15134 150 LTDYPH------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRK 222 (529)
T ss_pred HhhCCc------ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHH
Confidence 577776 899999999999999999999999999999999999999999999997656899999999998 4888
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||++++|++|++++.|+++++
T Consensus 223 ~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 223 LADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred hcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999988765
No 238
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-41 Score=392.66 Aligned_cols=212 Identities=31% Similarity=0.460 Sum_probs=184.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 451 ~I~~~nvsf~Y~~----------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~i 512 (686)
T TIGR03797 451 AIEVDRVTFRYRP----------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFY 512 (686)
T ss_pred eEEEEEEEEEcCC----------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEE
Confidence 6999999999931 236799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------ccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v 167 (612)
||++++ .+.+|+.+|||+|++.+|+. |++||+.++. + .+ ++++.++++..|+.+. .||.+
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~i 582 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVI 582 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C-CC----HHHHHHHHHHcCcHHHHHhccccccccc
Confidence 999874 46789999999999999987 9999998742 1 12 3456777888877643 46777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++ ++|+|+++|+++ ..+.+|+|
T Consensus 583 g--e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~I 654 (686)
T TIGR03797 583 S--EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRI 654 (686)
T ss_pred c--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEE
Confidence 5 334589999999999999999999999999999999999999999999875 479999999996 45779999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+.+++.
T Consensus 655 ivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 655 YVLDAGRVVQQGTYDELM 672 (686)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998864
No 239
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=386.08 Aligned_cols=216 Identities=22% Similarity=0.378 Sum_probs=185.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++|+|+. +++++|+|+|+++++||.+||+||||||||||+++|+|+.+| .+|+|.+
T Consensus 341 ~i~~~~vsf~y~~----------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i 402 (582)
T PRK11176 341 DIEFRNVTFTYPG----------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILL 402 (582)
T ss_pred eEEEEEEEEecCC----------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEE
Confidence 6999999999831 236799999999999999999999999999999999999987 7899999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
||++++ .+.+++.++||+|++.+|+. |++||+.++. +. +..+++++++++..|+.+ -.||.+
T Consensus 403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~---~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i 474 (582)
T PRK11176 403 DGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TE---QYSREQIEEAARMAYAMDFINKMDNGLDTVI 474 (582)
T ss_pred CCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CC---CCCHHHHHHHHHHhCcHHHHHhcccccCcee
Confidence 999875 35678899999999999986 9999998641 11 112345667777777543 357777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
|+ ....||||||||++|||+|+++|++++||||||+||+.+...+++.|+++. .++|+|++||+++ ..+.||+|
T Consensus 475 g~--~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~--~~~~~D~I 548 (582)
T PRK11176 475 GE--NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLS--TIEKADEI 548 (582)
T ss_pred CC--CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEE
Confidence 63 345799999999999999999999999999999999999999999999974 3689999999995 56789999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+.+++.
T Consensus 549 i~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 549 LVVEDGEIVERGTHAELL 566 (582)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 240
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-41 Score=339.26 Aligned_cols=210 Identities=32% Similarity=0.554 Sum_probs=174.0
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+. ..++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 3 l~~~~l~~~~~----------------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~ 64 (220)
T cd03245 3 IEFRNVSFSYP----------------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLD 64 (220)
T ss_pred EEEEEEEEEcC----------------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEEC
Confidence 78899998872 0125699999999999999999999999999999999999976 78999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-----C
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG-----G 170 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-----~ 170 (612)
|+++.. ...++.++|++|++.+++ .||.||+.+... ... .+++.++++.+++.+..++.+.+ .
T Consensus 65 g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 135 (220)
T cd03245 65 GTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIG 135 (220)
T ss_pred CEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC----CCC----HHHHHHHHHHcCcHHHHHhccccccceec
Confidence 988632 345678999999998887 599999976421 111 23466788888998766654310 1
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.....||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++. + ++||++++|
T Consensus 136 ~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~-~-~~~d~v~~l 211 (220)
T cd03245 136 ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSL-L-DLVDRIIVM 211 (220)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH-H-HhCCEEEEE
Confidence 12348999999999999999999999999999999999999999999999864 3899999999973 4 799999999
Q ss_pred cCCeEEEec
Q 046991 251 SNGFVVHNG 259 (612)
Q Consensus 251 ~~G~iv~~G 259 (612)
++|++++.|
T Consensus 212 ~~g~i~~~~ 220 (220)
T cd03245 212 DSGRIVADG 220 (220)
T ss_pred eCCeEeecC
Confidence 999998654
No 241
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=340.22 Aligned_cols=216 Identities=29% Similarity=0.484 Sum_probs=173.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++++. +.+.+++|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~~-----------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 62 (229)
T cd03254 2 EIEFENVNFSYD-----------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILI 62 (229)
T ss_pred eEEEEEEEEecC-----------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEE
Confidence 478999998872 234699999999999999999999999999999999999976 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-----
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG----- 169 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----- 169 (612)
+|.++. ...+++.++|++|++.+++. |++||+.+.... ... +++++.++.+++.+..+....+
T Consensus 63 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (229)
T cd03254 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL 133 (229)
T ss_pred CCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC----CCH----HHHHHHHHHhChHHHHHhCcccccCHh
Confidence 998764 23456789999999988886 999999764211 111 2233444444443332221100
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++. + +.||++++
T Consensus 134 ~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~i~~ 209 (229)
T cd03254 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLST-I-KNADKILV 209 (229)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH-H-hhCCEEEE
Confidence 11234899999999999999999999999999999999999999999999985 3 7899999999973 5 46999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|++++.|+.+++.
T Consensus 210 l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 210 LDDGKIIEEGTHDELL 225 (229)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999998877654
No 242
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-41 Score=360.82 Aligned_cols=214 Identities=29% Similarity=0.487 Sum_probs=185.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++|+|++++|. ++++||+++||+|++||-+||+|+|||||||++|+|.++.+ .+|+|++
T Consensus 351 ~I~F~dV~f~y~-----------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~I 410 (591)
T KOG0057|consen 351 SIEFDDVHFSYG-----------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILI 410 (591)
T ss_pred cEEEEeeEEEeC-----------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEE
Confidence 399999999992 34559999999999999999999999999999999999986 4899999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
||++++ .+.+|+.|||||||..+|++ ||.+|+.|+. +..+ .++|.++.++.|+.+ -..|.|
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn----~sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGN----PSAS----DEEVVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCC----CCcC----HHHHHHHHHHcCcHHHHHhccccchhhH
Confidence 999874 47789999999999999987 9999999863 1222 345667777777754 345556
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....|||||||||++|||++.||+|+++|||||.||+.+..++++.+++. ..++|+|++.|+.+ ..+-||+|
T Consensus 482 G--erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~--ll~~~DkI 555 (591)
T KOG0057|consen 482 G--ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLD--LLKDFDKI 555 (591)
T ss_pred h--hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecch--hHhcCCEE
Confidence 4 445689999999999999999999999999999999999999999999994 45899999999986 67899999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 046991 248 VLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~~ 266 (612)
++|++|++...|+.+++..
T Consensus 556 ~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 556 IVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEECCeeEEeccHHHHhh
Confidence 9999999999999998765
No 243
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.3e-41 Score=335.82 Aligned_cols=197 Identities=28% Similarity=0.391 Sum_probs=168.7
Q ss_pred cccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcC
Q 046991 42 VTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALF 121 (612)
Q Consensus 42 ~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 121 (612)
++.+++++++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++... ..+...+.
T Consensus 28 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~ 96 (224)
T cd03220 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFN 96 (224)
T ss_pred hhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCC
Confidence 34456778899999999999999999999999999999999999976 79999999987531 11123455
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 122 PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
+.+||+||+.+..... .....+.+++++++++.+|+.+..++.++ +||||||||++||++|+.+|++++|||
T Consensus 97 ~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 97 PELTGRENIYLNGRLL--GLSRKEIDEKIDEIIEFSELGDFIDLPVK------TYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred CCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7789999998865432 11234455678899999999988888886 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999764 889999999997 588899999999999998765
No 244
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-41 Score=385.01 Aligned_cols=214 Identities=21% Similarity=0.382 Sum_probs=186.2
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|+++.|+ +++++|+|+|+++++||.+||+|+||||||||+|+|+|+.+| .+|+|.
T Consensus 339 ~~i~~~~v~f~y~-----------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~ 399 (592)
T PRK10790 339 GRIDIDNVSFAYR-----------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIR 399 (592)
T ss_pred CeEEEEEEEEEeC-----------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEE
Confidence 3599999999983 224699999999999999999999999999999999999987 789999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------cccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ 166 (612)
+||.+++ .+.+++.++||+|++.+|+. |++||+.++. + . .+++++++++.+|+.+. .||.
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~-~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR----D-I----SEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC----C-C----CHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 9999874 46789999999999999997 9999998752 1 1 23457788888887643 4666
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++. .++|+|++||+++ ..+.||+
T Consensus 470 i~--e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~~--~l~~~D~ 543 (592)
T PRK10790 470 LG--EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRLS--TIVEADT 543 (592)
T ss_pred cc--CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCE
Confidence 65 2345799999999999999999999999999999999999999999999985 3689999999995 4678999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
|++|++|+++..|+.+++.
T Consensus 544 ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998874
No 245
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4e-41 Score=331.11 Aligned_cols=196 Identities=28% Similarity=0.425 Sum_probs=172.8
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~i~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (201)
T cd03231 1 LEADELTCER------------------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLN 60 (201)
T ss_pred CEEEEEEEEe------------------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEC
Confidence 4688998877 345799999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|+++.. ..+++.++|++|++.+++.+|++||+.+.... ...++++++++.+|+.+..++.+. .|
T Consensus 61 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~------~L 126 (201)
T cd03231 61 GGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD--------HSDEQVEEALARVGLNGFEDRPVA------QL 126 (201)
T ss_pred CEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc--------ccHHHHHHHHHHcCChhhhcCchh------hC
Confidence 988642 34667899999999999999999999875311 124567899999999988888776 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||++. ++...+|+++++
T Consensus 127 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 127 SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999999999999999865 4889999999997 588899999887
No 246
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.3e-40 Score=337.80 Aligned_cols=230 Identities=25% Similarity=0.338 Sum_probs=183.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+..+.+|+|.+
T Consensus 1 ~i~~~nl~~~~------------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 62 (248)
T PRK09580 1 MLSIKDLHVSV------------------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 62 (248)
T ss_pred CeEEEEEEEEe------------------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEE
Confidence 37899999888 345699999999999999999999999999999999999631137999999
Q ss_pred CCeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHH-ccC-CCC---CHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSAL-LRL-TAG---RRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~~-~~~---~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. .. .++.++|++|++.+++.+|+.+++.+... +.. ... ...+..++++++++.+++. +..++.+
T Consensus 63 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (248)
T PRK09580 63 KGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142 (248)
T ss_pred CCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC
Confidence 9987642 22 23569999999998888888777654321 110 000 1223356788899999995 4455544
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc-cCe
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL-FDR 246 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~D~ 246 (612)
. +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++. +... +|+
T Consensus 143 ~-----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~ 215 (248)
T PRK09580 143 N-----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDY 215 (248)
T ss_pred C-----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCE
Confidence 2 26999999999999999999999999999999999999999999999965 57899999999974 6666 899
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhCCC
Q 046991 247 LVLLSNGFVVHNGTLNHLEERLKSAGH 273 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~~f~~~g~ 273 (612)
+++|++|++++.|+.+.+ +.+...++
T Consensus 216 i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 216 VHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 999999999999998754 33344333
No 247
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.6e-41 Score=340.58 Aligned_cols=202 Identities=26% Similarity=0.432 Sum_probs=175.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 4 ~l~~~~l~~~~------------------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~ 63 (251)
T PRK09544 4 LVSLENVSVSF------------------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKR 63 (251)
T ss_pred EEEEeceEEEE------------------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 68999999988 345699999999999999999999999999999999999977 7899999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCC--CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPL--LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~--lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+| +..++|++|++.+++. .|+.|++.+. +. ...+++.++++.+|+.+..++.+. .
T Consensus 64 ~~--------~~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~~----~~~~~~~~~l~~~gl~~~~~~~~~------~ 120 (251)
T PRK09544 64 NG--------KLRIGYVPQKLYLDTTLPLTVNRFLRLR-----PG----TKKEDILPALKRVQAGHLIDAPMQ------K 120 (251)
T ss_pred CC--------ccCEEEeccccccccccChhHHHHHhcc-----cc----ccHHHHHHHHHHcCChHHHhCChh------h
Confidence 87 2359999999887775 3778776531 11 112457889999999988888776 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.||++++|++ ++
T Consensus 121 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i 198 (251)
T PRK09544 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HI 198 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ce
Confidence 99999999999999999999999999999999999999999999997655899999999998 58899999999964 79
Q ss_pred EEecChhhH
Q 046991 256 VHNGTLNHL 264 (612)
Q Consensus 256 v~~G~~~~~ 264 (612)
+..|+++++
T Consensus 199 ~~~g~~~~~ 207 (251)
T PRK09544 199 CCSGTPEVV 207 (251)
T ss_pred EeeCCHHHH
Confidence 999988765
No 248
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.5e-41 Score=340.28 Aligned_cols=200 Identities=29% Similarity=0.462 Sum_probs=175.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999984 38999999998742 34556799999999888889999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh-------CCCEEEEe
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH-------DPAVVLID 200 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~-------~p~lllLD 200 (612)
||+.+..... ...++..++++++++.+||.+..++.++ .||||||||++||++|+. +|++++||
T Consensus 88 ~nl~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK---TRTEAVASALNEVAEALGLDDKLGRSVN------QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC---CCcHHHHHHHHHHHHHcCCHhHhcCCcc------cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 1233445678999999999888888776 899999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
|||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.++||++++|++|+++..|+.+++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999975 4899999999998 58899999999999999999988765
No 249
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=346.44 Aligned_cols=221 Identities=24% Similarity=0.381 Sum_probs=183.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---Cceee
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS---RKVSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~---~~~~G 93 (612)
..|+++||++.+ +++.+|+++|+++++||+++|+||||||||||+++|+|+.++ .+.+|
T Consensus 44 ~~l~i~nl~~~~------------------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G 105 (305)
T PRK14264 44 AKLSVEDLDVYY------------------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDG 105 (305)
T ss_pred ceEEEEEEEEEe------------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce
Confidence 368999999888 345699999999999999999999999999999999999853 13799
Q ss_pred EEEECCeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC----------CC-CHHHHHHHHHHHHHHc
Q 046991 94 KLLVNDRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT----------AG-RRKQAASRVRGLLKEL 157 (612)
Q Consensus 94 ~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~----------~~-~~~~~~~~v~~~l~~l 157 (612)
+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....... .. ..+...+++.++++.+
T Consensus 106 ~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (305)
T PRK14264 106 SVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA 184 (305)
T ss_pred EEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc
Confidence 99999988642 2456789999999988874 999999986432100 01 1223456788999999
Q ss_pred CCcc----cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc
Q 046991 158 GLDH----VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTI 233 (612)
Q Consensus 158 gL~~----~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~ 233 (612)
++.+ ..+..+ ++||||||||++||++|+++|++|||||||+|||+.++..+.+.|+++++ ++|||++|
T Consensus 185 ~l~~~~~~~~~~~~------~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivt 256 (305)
T PRK14264 185 ALWDEVNDRLDDNA------LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVT 256 (305)
T ss_pred CCchhhhHHhcCcc------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEE
Confidence 9853 334444 48999999999999999999999999999999999999999999999974 47999999
Q ss_pred cCCchHHHhccCeE-EEEcCCeEEEecChhhHH
Q 046991 234 HQPGFRILELFDRL-VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 234 H~~~~~i~~~~D~v-~lL~~G~iv~~G~~~~~~ 265 (612)
|+++ .+.++||++ ++|++|+++..|+++++.
T Consensus 257 H~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 257 HNMQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred cCHH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 9998 488999997 578999999999987653
No 250
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-41 Score=392.92 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=183.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.
T Consensus 476 ~~I~~~~vsf~y~~----------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~ 537 (710)
T TIGR03796 476 GYVELRNITFGYSP----------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEIL 537 (710)
T ss_pred CeEEEEEEEEecCC----------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEE
Confidence 36999999999931 235799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------ccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ 166 (612)
+||.+++ ...+|+.++||+|++.+|+. |++||+.++. +..+ ++++.++++..|+.+ -.||.
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~ 608 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----PTIP----DADLVRACKDAAIHDVITSRPGGYDAE 608 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccce
Confidence 9999874 46789999999999999986 9999997641 1112 344666777777654 34666
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+++|++|+||||||+||+.+...+.+.|++ .++|+|+++|+++ ..+.||+
T Consensus 609 i~--e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~ 680 (710)
T TIGR03796 609 LA--EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDE 680 (710)
T ss_pred ec--cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCE
Confidence 75 33458999999999999999999999999999999999999999999975 3789999999996 4567999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++|++|+++..|+.+++.+
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998754
No 251
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-41 Score=360.19 Aligned_cols=219 Identities=31% Similarity=0.455 Sum_probs=197.0
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.++| ++|+
T Consensus 5 ~~~ll~~~~i~K~F------------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~ 64 (500)
T COG1129 5 TPPLLELRGISKSF------------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGE 64 (500)
T ss_pred ccceeeeecceEEc------------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCce
Confidence 34578899999888 677899999999999999999999999999999999999987 8999
Q ss_pred EEECCeeCC---h-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC-C-CCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 95 LLVNDRPMD---A-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT-A-GRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 95 I~~~g~~~~---~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
|.+||++.. + +.....|+.|+|+..+.|+|||.||+.++.....+ . ..++..++++.++|+.+|+....+++++
T Consensus 65 I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred EEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh
Confidence 999999874 2 44567899999999999999999999887554321 1 2667788899999999999755888887
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.||+||||-|.||+||..++++|+||||||.|+......+.++++++. ++|.+||++||.++ |++++|||+.
T Consensus 145 ------~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~-Ei~~i~Drit 216 (500)
T COG1129 145 ------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLD-EVFEIADRIT 216 (500)
T ss_pred ------hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHH-HHHHhcCEEE
Confidence 899999999999999999999999999999999999999999999996 56999999999998 7999999999
Q ss_pred EEcCCeEEEecCh
Q 046991 249 LLSNGFVVHNGTL 261 (612)
Q Consensus 249 lL~~G~iv~~G~~ 261 (612)
+|+||+.+..++.
T Consensus 217 VlRDG~~v~~~~~ 229 (500)
T COG1129 217 VLRDGRVVGTRPT 229 (500)
T ss_pred EEeCCEEeeeccc
Confidence 9999999988883
No 252
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-41 Score=374.27 Aligned_cols=225 Identities=25% Similarity=0.403 Sum_probs=188.7
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.++ ..+++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| +.+|+|
T Consensus 257 ~~~l~~~~l~~~~~---------------~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i 320 (506)
T PRK13549 257 EVILEVRNLTAWDP---------------VNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEI 320 (506)
T ss_pred CceEEEecCccccc---------------cccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEE
Confidence 34689999988762 01235699999999999999999999999999999999999863 268999
Q ss_pred EECCeeCCh----hhhcccEEEEecCC---CcCCCCCHHHHHHHHHHccCCC---CCHHHHHHHHHHHHHHcCCc-cccc
Q 046991 96 LVNDRPMDA----EHFRRISGYVTQDD---ALFPLLTVEETLMCSALLRLTA---GRRKQAASRVRGLLKELGLD-HVAS 164 (612)
Q Consensus 96 ~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~---~~~~~~~~~v~~~l~~lgL~-~~~~ 164 (612)
.++|++++. +..++.++|++|++ .+++.+||.||+.+........ ...++.+++++++++.+|+. +..+
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 400 (506)
T PRK13549 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE 400 (506)
T ss_pred EECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc
Confidence 999988642 23456799999995 4788899999998753211111 12334456789999999996 5678
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
++++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++|
T Consensus 401 ~~~~------~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~-~~~~~~ 472 (506)
T PRK13549 401 LAIA------RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELP-EVLGLS 472 (506)
T ss_pred cccc------cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhC
Confidence 8886 8999999999999999999999999999999999999999999999976 4899999999998 588999
Q ss_pred CeEEEEcCCeEEEecChhhH
Q 046991 245 DRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~ 264 (612)
|++++|++|+++..|+++++
T Consensus 473 d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 473 DRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CEEEEEECCEEEEEeccccC
Confidence 99999999999999987764
No 253
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-42 Score=362.08 Aligned_cols=216 Identities=32% Similarity=0.516 Sum_probs=188.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|+|++|+. ...++|+|+|+++++||.+||+|+||||||||+..|+|-.+| .+|+|.+
T Consensus 336 ~l~~~~vsF~y~~----------------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~ 397 (573)
T COG4987 336 ALELRNVSFTYPG----------------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITL 397 (573)
T ss_pred eeeeccceeecCC----------------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeE
Confidence 7999999999952 345799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc-------cccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA-------SSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v 167 (612)
||.++. ++.+++.+++++|...+|.. |+++||..+. +. ..++.+.++++.+||++.. |+.+
T Consensus 398 ~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 398 NGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 998864 35588899999999999987 9999998752 22 2235577888999987654 4556
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +..+.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-+ +|+|+|++||+... .+.||+|
T Consensus 469 g--e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~--le~~drI 542 (573)
T COG4987 469 G--EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRG--LERMDRI 542 (573)
T ss_pred c--cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEeccccc--HhhcCEE
Confidence 4 4557899999999999999999999999999999999999999999999875 48999999999974 6889999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 046991 248 VLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~~ 266 (612)
++|++|+++++|+.+++.+
T Consensus 543 ivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 543 IVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEECCeeeecCCHHhhhc
Confidence 9999999999999988754
No 254
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-41 Score=321.28 Aligned_cols=171 Identities=39% Similarity=0.641 Sum_probs=155.2
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++++ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+|
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~ 60 (173)
T cd03230 1 IEVRNLSKRY------------------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVL 60 (173)
T ss_pred CEEEEEEEEE------------------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEC
Confidence 4688998877 234699999999999999999999999999999999999976 69999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|+++.. ..+++.++|++|++.+++.+|+.||+. |
T Consensus 61 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------L 96 (173)
T cd03230 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------L 96 (173)
T ss_pred CEEcccchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------c
Confidence 998743 345678999999999999999999873 7
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|++++|++|++
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999765 889999999998 58889999999999874
No 255
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.2e-41 Score=330.43 Aligned_cols=199 Identities=28% Similarity=0.452 Sum_probs=172.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 2 ~l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 61 (207)
T PRK13539 2 MLEGEDLACVR------------------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKL 61 (207)
T ss_pred EEEEEeEEEEE------------------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEE
Confidence 58999999888 345699999999999999999999999999999999999876 7899999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
+|+++.....++.++|++|++.+++.+||+||+.+..... .. ..++++++++.+||.+..++.++ .||
T Consensus 62 ~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~------~LS 129 (207)
T PRK13539 62 DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL--GG----EELDIAAALEAVGLAPLAHLPFG------YLS 129 (207)
T ss_pred CCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHcCChh------hcC
Confidence 9987642236678999999998888999999998765332 11 12357899999999887777776 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.. |+++.+..
T Consensus 130 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999999999999999875 4899999999997 4654 98887744
No 256
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.2e-41 Score=388.96 Aligned_cols=216 Identities=26% Similarity=0.447 Sum_probs=182.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.++++|++|+|+. .+++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.
T Consensus 477 ~~I~~~nVsf~Y~~---------------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~ 539 (711)
T TIGR00958 477 GLIEFQDVSFSYPN---------------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVL 539 (711)
T ss_pred CeEEEEEEEEECCC---------------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEE
Confidence 35999999999941 1236799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------cccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ 166 (612)
+||++++ .+.++++++||+|++.+|+. |++||+.++. +..+ ++++.++++..++.+. .||.
T Consensus 540 idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 540 LDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGL----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred ECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCC----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 9999874 36688899999999999986 9999998752 1112 3456677777776543 5677
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+++|++++||||||+||+.+...+.+ .. ...++|+|+++|+++ ..+.+|+
T Consensus 611 ig--e~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~--~i~~aD~ 682 (711)
T TIGR00958 611 VG--EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLS--TVERADQ 682 (711)
T ss_pred cc--CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHH--HHHhCCE
Confidence 75 3345899999999999999999999999999999999999999988 22 235789999999996 4578999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++|++|++++.|+.+++.+
T Consensus 683 IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 683 ILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEECCEEEEeeCHHHHHh
Confidence 99999999999999988754
No 257
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-41 Score=338.19 Aligned_cols=213 Identities=29% Similarity=0.493 Sum_probs=170.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+|
T Consensus 1 l~~~~l~~~~~-----------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~ 61 (236)
T cd03253 1 IEFENVTFAYD-----------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILID 61 (236)
T ss_pred CEEEEEEEEeC-----------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEEC
Confidence 46888888772 235699999999999999999999999999999999999976 79999999
Q ss_pred CeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHH-----HHHHHHHHc--CCccccccccc
Q 046991 99 DRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAAS-----RVRGLLKEL--GLDHVASSRIG 168 (612)
Q Consensus 99 g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg 168 (612)
|+++. ...+++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ +++...++.+
T Consensus 62 g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~- 135 (236)
T cd03253 62 GQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG- 135 (236)
T ss_pred CEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-
Confidence 98864 2345678999999998886 5999999875311 11211111 122233333 3333333333
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++. +. .||+++
T Consensus 136 -----~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~~-~~d~~~ 206 (236)
T cd03253 136 -----LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLST-IV-NADKII 206 (236)
T ss_pred -----CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-HH-hCCEEE
Confidence 4899999999999999999999999999999999999999999999985 4 8899999999974 64 599999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|+++..|+.+++.
T Consensus 207 ~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 207 VLKDGRIVERGTHEELL 223 (236)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999998877654
No 258
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.5e-41 Score=344.25 Aligned_cols=216 Identities=21% Similarity=0.361 Sum_probs=181.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.++. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ .+|+|++
T Consensus 2 ~i~~~nls~~~~~----------------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i 62 (275)
T cd03289 2 QMTVKDLTAKYTE----------------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQI 62 (275)
T ss_pred eEEEEEEEEEeCC----------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEE
Confidence 4789999998831 23469999999999999999999999999999999999985 3799999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-----
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG----- 169 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----- 169 (612)
+|.++. ...+++.++|++|++.+++. |++||+.... ... .+++.++++.+||.+..++.+++
T Consensus 63 ~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~-----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~ 132 (275)
T cd03289 63 DGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG-----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVL 132 (275)
T ss_pred CCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc-----CCC----HHHHHHHHHHcCCHHHHHhCccccccee
Confidence 999874 24567889999999999985 9999996321 111 23567788899998766665541
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
++....||||||||++|||||+.+|++++|||||++||+.+...+.+.|+++. .++|||+++|+++ .+. .|||+++
T Consensus 133 ~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~v 208 (275)
T cd03289 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLV 208 (275)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEE
Confidence 12234699999999999999999999999999999999999999999999874 4799999999996 354 5999999
Q ss_pred EcCCeEEEecChhhHHH
Q 046991 250 LSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~~ 266 (612)
|++|++++.|+++++..
T Consensus 209 l~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 209 IEENKVRQYDSIQKLLN 225 (275)
T ss_pred ecCCeEeecCCHHHHhh
Confidence 99999999999988753
No 259
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.6e-41 Score=377.58 Aligned_cols=216 Identities=31% Similarity=0.566 Sum_probs=186.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|+++.|+. +++++|+|+|+++++||.+||+||||||||||+++|+|+.+| .+|+|.
T Consensus 337 ~~i~~~~v~f~y~~----------------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~ 398 (574)
T PRK11160 337 VSLTLNNVSFTYPD----------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEIL 398 (574)
T ss_pred CeEEEEEEEEECCC----------------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEE
Confidence 46999999999831 234699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc------ccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV------ASSRI 167 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~v 167 (612)
+||++++ .+.+|+.++||+|++.+|+. |++||+.++. +. ..++++.++++.+|+.+. .||.+
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~----~~~~~i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAA----PN----ASDEALIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCC----Cc----cCHHHHHHHHHHcCCHHHHcCccccCchh
Confidence 9999874 36788999999999999986 9999998752 11 223567888899988765 35666
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....||||||||++|||+|+++|++++|||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++
T Consensus 470 g--e~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i 543 (574)
T PRK11160 470 G--EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRI 543 (574)
T ss_pred c--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEE
Confidence 4 3455899999999999999999999999999999999999999999999985 47899999999973 4679999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|++++.|+.+++.
T Consensus 544 ~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELL 561 (574)
T ss_pred EEEeCCeEEEeCCHHHHH
Confidence 999999999999988764
No 260
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=339.47 Aligned_cols=245 Identities=27% Similarity=0.370 Sum_probs=213.0
Q ss_pred CCCCCCCCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046991 4 PVRAPVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~ 83 (612)
|.-+|..-.....+.|+.+|+.+.++.+...++ .......++++||+++++||.++|+|+||||||||-.+|.
T Consensus 262 P~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~-------r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 262 PSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLR-------RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred CCCCCCCCCCCCCceEEecceEEEEecCCcccc-------ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 555555555557788999999999986643221 1224467999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEECCeeCCh------hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 046991 84 GKISSRKVSGKLLVNDRPMDA------EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLK 155 (612)
Q Consensus 84 G~~~~~~~~G~I~~~g~~~~~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~ 155 (612)
+++++ +|+|.++|++++. ..+|+.+-.|+||| .+.|.+||.|-+.-+.....+..+.++..+++.++|+
T Consensus 335 rL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~ 411 (534)
T COG4172 335 RLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE 411 (534)
T ss_pred hhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHH
Confidence 99976 5999999999853 34678899999998 5899999999999887776666688899999999999
Q ss_pred HcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc
Q 046991 156 ELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 156 ~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 234 (612)
++||+.. .+++ +++.|||||||++|||||+.+|++++||||||.||-.-+.+|+++|+++.++.|.+-++++|
T Consensus 412 EVGLDp~~r~RY------PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISH 485 (534)
T COG4172 412 EVGLDPATRNRY------PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485 (534)
T ss_pred HcCCChhHhhcC------CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 9999854 4444 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 235 QPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 235 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+.. +..+||+|++|++|+||+.|+.+++.
T Consensus 486 DL~V-vrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 486 DLAV-VRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred cHHH-HHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 9985 88999999999999999999998764
No 261
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.3e-41 Score=387.42 Aligned_cols=219 Identities=32% Similarity=0.526 Sum_probs=187.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.++++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++| .+|+|.
T Consensus 462 ~~I~~~~vsf~Y~~----------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~ 523 (694)
T TIGR03375 462 GEIEFRNVSFAYPG----------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVL 523 (694)
T ss_pred ceEEEEEEEEEeCC----------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEE
Confidence 36999999999931 235699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------ccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ 166 (612)
+||.++. ...+|+.++||+|++.+|+. |++||+.++. +..+ ++++.++++..|+.+ -.||.
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~ 594 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQ 594 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----CCCC----HHHHHHHHHHcChHHHHHhCcccccce
Confidence 9999874 36789999999999999986 9999998641 1112 345566677766643 35677
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++. .++|+|+++|+++ ..+.||+
T Consensus 595 i~--e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~--~~~~~D~ 668 (694)
T TIGR03375 595 IG--ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTS--LLDLVDR 668 (694)
T ss_pred ec--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHH--HHHhCCE
Confidence 75 3345899999999999999999999999999999999999999999999985 3789999999996 4688999
Q ss_pred EEEEcCCeEEEecChhhHHHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEERL 268 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~~f 268 (612)
|++|++|++++.|+.+++.+..
T Consensus 669 iivl~~G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLEAL 690 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHHHh
Confidence 9999999999999999876543
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=372.01 Aligned_cols=215 Identities=22% Similarity=0.405 Sum_probs=182.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.+ + .+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.
T Consensus 264 ~~l~~~~l~~~~------------------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~ 321 (510)
T PRK09700 264 TVFEVRNVTSRD------------------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIR 321 (510)
T ss_pred cEEEEeCccccC------------------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEE
Confidence 368888888532 1 389999999999999999999999999999999999976 789999
Q ss_pred ECCeeCCh----hhhcccEEEEecC---CCcCCCCCHHHHHHHHHHcc---CC---C-CCHHHHHHHHHHHHHHcCCc-c
Q 046991 97 VNDRPMDA----EHFRRISGYVTQD---DALFPLLTVEETLMCSALLR---LT---A-GRRKQAASRVRGLLKELGLD-H 161 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~---~~l~~~lTv~E~l~~~~~l~---~~---~-~~~~~~~~~v~~~l~~lgL~-~ 161 (612)
++|+++.. ...++.++||+|+ ..+++.+||+||+.+....+ .. . ...++.+++++++++.+|+. +
T Consensus 322 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 401 (510)
T PRK09700 322 LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH 401 (510)
T ss_pred ECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCC
Confidence 99988642 2345679999998 46889999999998753211 00 0 01233345688999999997 6
Q ss_pred cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH
Q 046991 162 VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL 241 (612)
Q Consensus 162 ~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 241 (612)
..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++|||++ ++.
T Consensus 402 ~~~~~~~------~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~-~~~ 473 (510)
T PRK09700 402 SVNQNIT------ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELP-EII 473 (510)
T ss_pred CccCccc------cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHH
Confidence 7888887 8999999999999999999999999999999999999999999999975 4899999999998 588
Q ss_pred hccCeEEEEcCCeEEEecCh
Q 046991 242 ELFDRLVLLSNGFVVHNGTL 261 (612)
Q Consensus 242 ~~~D~v~lL~~G~iv~~G~~ 261 (612)
++||++++|++|+++..++.
T Consensus 474 ~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 474 TVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred hhCCEEEEEECCEEEEEecC
Confidence 99999999999999988765
No 263
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-40 Score=335.38 Aligned_cols=229 Identities=21% Similarity=0.282 Sum_probs=188.1
Q ss_pred cceEEEeeeEEEEecccccccceec-cccc-ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYC-GVTS-KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~-~~~~-~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G 93 (612)
++.++++||++.+.....+..+... ...+ ....+.+|+++|+++++||+++|+||||||||||+++|+|+.+| .+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVG 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--Cce
Confidence 4679999999998642111000000 0001 22456799999999999999999999999999999999999977 789
Q ss_pred EEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 94 KLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 94 ~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+|.++|+ +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..++.++
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM--GFKRKEIKAMTPKIIEFSELGEFIYQPVK----- 142 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----
Confidence 9999985 356778877888899999998764332 12344455667889999999988888776
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|++|
T Consensus 143 -~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G 219 (264)
T PRK13546 143 -KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGG 219 (264)
T ss_pred -cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECC
Confidence 8999999999999999999999999999999999999999999999964 5889999999997 488899999999999
Q ss_pred eEEEecChhhHHH
Q 046991 254 FVVHNGTLNHLEE 266 (612)
Q Consensus 254 ~iv~~G~~~~~~~ 266 (612)
+++..|+.+++.+
T Consensus 220 ~i~~~g~~~~~~~ 232 (264)
T PRK13546 220 KLKDYGELDDVLP 232 (264)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999887644
No 264
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.7e-40 Score=325.81 Aligned_cols=195 Identities=27% Similarity=0.382 Sum_probs=167.7
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (198)
T TIGR01189 1 LAARNLACSR------------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWN 60 (198)
T ss_pred CEEEEEEEEE------------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEEC
Confidence 4678888877 346799999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|+++.. ..+++.++|++|++.+++.+|+.||+.+...... . + .++++++++.+|+.+..++.++ .|
T Consensus 61 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~-~~~~~~~l~~~~l~~~~~~~~~------~L 128 (198)
T TIGR01189 61 GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A-QRTIEDALAAVGLTGFEDLPAA------QL 128 (198)
T ss_pred CEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c-HHHHHHHHHHcCCHHHhcCChh------hc
Confidence 998642 3355789999999999998999999987643321 1 1 3467889999999988888876 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++.. + .+|+++.
T Consensus 129 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc-c--cceEEee
Confidence 99999999999999999999999999999999999999999999865 48899999999863 3 4576654
No 265
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=321.24 Aligned_cols=173 Identities=42% Similarity=0.624 Sum_probs=155.6
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+ +++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 1 i~~~~l~~~~------------------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 60 (178)
T cd03229 1 LELKNVSKRY------------------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILID 60 (178)
T ss_pred CEEEEEEEEE------------------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 4688898877 335699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh-----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 99 DRPMDA-----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 99 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
|+++.. ...++.++|++|++.+++.+|++||+.+.
T Consensus 61 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------- 100 (178)
T cd03229 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG---------------------------------------- 100 (178)
T ss_pred CEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----------------------------------------
Confidence 988642 34567899999999999889999988531
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|+++|+++ ++.+.+|++++|++|
T Consensus 101 --lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 101 --LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 79999999999999999999999999999999999999999999998654789999999997 477899999999988
Q ss_pred e
Q 046991 254 F 254 (612)
Q Consensus 254 ~ 254 (612)
+
T Consensus 178 ~ 178 (178)
T cd03229 178 K 178 (178)
T ss_pred C
Confidence 5
No 266
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-41 Score=304.98 Aligned_cols=217 Identities=30% Similarity=0.463 Sum_probs=193.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|+++.| +..++|.||+++.++||.+.++||||||||||+|+|.=+..| .+|+..+
T Consensus 2 sirv~~in~~y------------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~i 61 (242)
T COG4161 2 SIQLNGINCFY------------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNI 61 (242)
T ss_pred ceEEccccccc------------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEe
Confidence 46788888777 677899999999999999999999999999999999998876 6899999
Q ss_pred CCeeCC------h---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 98 NDRPMD------A---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 98 ~g~~~~------~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
.|...+ . .++|+.+|+|+|+-.++|.+||.|||.-+. .+..+.++++.+.++.++++++.|.+.+|+.+-
T Consensus 62 a~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl 140 (242)
T COG4161 62 AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRVLGLSKDQALARAEKLLKRLRLKPYADRYPL 140 (242)
T ss_pred cccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHHhCCCHHHHHHHHHHHHHHhccccccccCce
Confidence 876542 1 357889999999999999999999997543 344445788888999999999999999998765
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
.|||||+|||+|||||+.+|++|++||||+.|||+-..++++++++++. .|.|-+++||..+. ..+.+.+|+
T Consensus 141 ------hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~v-a~k~as~vv 212 (242)
T COG4161 141 ------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEV-ARKTASRVV 212 (242)
T ss_pred ------ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhH-HHhhhhheE
Confidence 8999999999999999999999999999999999999999999999974 69999999999985 788999999
Q ss_pred EEcCCeEEEecChhh
Q 046991 249 LLSNGFVVHNGTLNH 263 (612)
Q Consensus 249 lL~~G~iv~~G~~~~ 263 (612)
.|.+|+|++.|+.+.
T Consensus 213 yme~g~ive~g~a~~ 227 (242)
T COG4161 213 YMENGHIVEQGDASC 227 (242)
T ss_pred eeecCeeEeecchhh
Confidence 999999999998754
No 267
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.1e-41 Score=333.18 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=172.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|++++++ .+++.+|+|+||++++||+++|+||||||||||+++|+|..+| .+|+|.+
T Consensus 2 ~l~~~~l~~~~~----------------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 63 (221)
T cd03244 2 DIEFKNVSLRYR----------------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILI 63 (221)
T ss_pred cEEEEEEEEecC----------------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEE
Confidence 378999998883 1235699999999999999999999999999999999999876 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-----
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG----- 169 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----- 169 (612)
+|.++.. ..+++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+..++...+
T Consensus 64 ~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~-----~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 133 (221)
T cd03244 64 DGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE-----YS----DEELWQALERVGLKEFVESLPGGLDTVV 133 (221)
T ss_pred CCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC-----CC----HHHHHHHHHHhCcHHHHHhccccccccc
Confidence 9998642 456778999999998776 599999964311 11 23456667777776544321000
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++. +. .||++++
T Consensus 134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~~-~~d~i~~ 209 (221)
T cd03244 134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDT-II-DSDRILV 209 (221)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-Hh-hCCEEEE
Confidence 12345899999999999999999999999999999999999999999999985 3 5899999999974 65 5999999
Q ss_pred EcCCeEEEecC
Q 046991 250 LSNGFVVHNGT 260 (612)
Q Consensus 250 L~~G~iv~~G~ 260 (612)
|++|++++.|+
T Consensus 210 l~~g~~~~~~~ 220 (221)
T cd03244 210 LDKGRVVEFDS 220 (221)
T ss_pred EECCeEEecCC
Confidence 99999998875
No 268
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-40 Score=316.43 Aligned_cols=233 Identities=27% Similarity=0.385 Sum_probs=205.1
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDP-KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.+|+++||.+++ .+ +.||++||+++++||+.+||||||||||||.++|+|.-....++|+|
T Consensus 2 ~~L~I~dLhv~v------------------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I 63 (251)
T COG0396 2 MMLEIKDLHVEV------------------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63 (251)
T ss_pred ceeEEeeeEEEe------------------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE
Confidence 479999999998 34 68999999999999999999999999999999999998766789999
Q ss_pred EECCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCcc-cccccccC
Q 046991 96 LVNDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLDH-VASSRIGG 169 (612)
Q Consensus 96 ~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~~-~~~~~vg~ 169 (612)
+++|+++.. ++.|+.+...+|.|.=+|..|+.+.|..+...+.... ...+..+++++.++.+++++ .+++.++
T Consensus 64 ~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN- 142 (251)
T COG0396 64 LFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN- 142 (251)
T ss_pred EECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-
Confidence 999999752 5567788999999999999999999998765432211 12466788999999999987 6788886
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc--CeE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF--DRL 247 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~--D~v 247 (612)
.++|||||||..|+..++.+|++.+||||-||||..+-..|.+.+++++ +.|.+++++||..+ +.++. |++
T Consensus 143 ----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~r--ll~~i~pD~v 215 (251)
T COG0396 143 ----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQR--LLDYIKPDKV 215 (251)
T ss_pred ----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHH--HHhhcCCCEE
Confidence 3899999999999999999999999999999999999999999999996 45899999999975 67777 999
Q ss_pred EEEcCCeEEEecChhhHHHHHHhCCCCCC
Q 046991 248 VLLSNGFVVHNGTLNHLEERLKSAGHCIP 276 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~~~f~~~g~~~p 276 (612)
.+|.+|+|+..|.+ ++.+++++.||.|-
T Consensus 216 hvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 216 HVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred EEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 99999999999999 88899999898653
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-40 Score=339.78 Aligned_cols=227 Identities=22% Similarity=0.343 Sum_probs=177.0
Q ss_pred CCCCCCCCCc-----ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 046991 7 APVSGSRKAL-----CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEI 81 (612)
Q Consensus 7 ~~~~~~~~~~-----~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~ 81 (612)
|+.+|+...+ -.|+++|++++++. ..+.+|+|+|+++++||+++|+|+||||||||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~----------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~ 66 (257)
T cd03288 3 ASISGSSNSGLVGLGGEIKIHDLCVRYEN----------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLA 66 (257)
T ss_pred ceecCCCCcccccCCceEEEEEEEEEeCC----------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 4445555433 36999999998820 12569999999999999999999999999999999
Q ss_pred HHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC
Q 046991 82 LAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG 158 (612)
Q Consensus 82 L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg 158 (612)
|+|+.++ .+|+|.++|+++.. ..+++.++|++|++.+++. |++||+.... .... +++.++++..+
T Consensus 67 l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~-----~~~~----~~~~~~l~~~~ 134 (257)
T cd03288 67 FFRMVDI--FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC-----KCTD----DRLWEALEIAQ 134 (257)
T ss_pred HHcccCC--CCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC-----CCCH----HHHHHHHHHhC
Confidence 9999976 79999999998742 3567789999999988875 9999985321 0011 12233333334
Q ss_pred CcccccccccC-----CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc
Q 046991 159 LDHVASSRIGG-----GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTI 233 (612)
Q Consensus 159 L~~~~~~~vg~-----~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~ 233 (612)
+.+..+....+ +.....||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .++|||++|
T Consensus 135 l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~s 212 (257)
T cd03288 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIA 212 (257)
T ss_pred cHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEe
Confidence 43222211100 12234899999999999999999999999999999999999999999999874 378999999
Q ss_pred cCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 234 HQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 234 H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+++. +.. ||++++|++|+++..|+++++.
T Consensus 213 h~~~~-~~~-~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 213 HRVST-ILD-ADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred cChHH-HHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 99984 654 9999999999999999987764
No 270
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-40 Score=370.51 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=182.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 3 ~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~ 62 (490)
T PRK10938 3 SLQISQGTFRL------------------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQS 62 (490)
T ss_pred eEEEEeEEEEc------------------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEE
Confidence 68999999988 335699999999999999999999999999999999999976 7899999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCc--C------CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDAL--F------PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSR 166 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l--~------~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 166 (612)
+|.++. ....++.++|++|++.. + ..+||+|++.+. .+..++++++++.+||.+..++.
T Consensus 63 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~ 132 (490)
T PRK10938 63 QFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----------VKDPARCEQLAQQFGITALLDRR 132 (490)
T ss_pred CCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----------hhHHHHHHHHHHHcCCHhhhhCC
Confidence 997653 23345679999998643 1 146888887531 12346788999999999888888
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.||+
T Consensus 133 ~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~-~~~~~~d~ 204 (490)
T PRK10938 133 FK------YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFD-EIPDFVQF 204 (490)
T ss_pred cc------cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCE
Confidence 87 8999999999999999999999999999999999999999999999975 4899999999998 58899999
Q ss_pred EEEEcCCeEEEecChhhH
Q 046991 247 LVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~ 264 (612)
+++|++|+++..|+++++
T Consensus 205 v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 205 AGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998765
No 271
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.2e-41 Score=388.28 Aligned_cols=215 Identities=26% Similarity=0.433 Sum_probs=184.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++|+|+ .++++|+|+|+++++||.+||+||||||||||+++|+|+++| .+|+|++
T Consensus 473 ~I~~~~vsf~y~-----------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~i 533 (708)
T TIGR01193 473 DIVINDVSYSYG-----------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILL 533 (708)
T ss_pred cEEEEEEEEEcC-----------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEE
Confidence 699999999983 235699999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
||.++. .+.+|+.+|||+|++.+|+. |++||+.++.. +..+ ++++.++++..|+.+ -.||.+
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i 605 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---ENVS----QDEIWAACEIAEIKDDIENMPLGYQTEL 605 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence 999864 46788999999999999987 99999987521 1112 234566666666643 357777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++ .|+|+|+++|+++ ..+.+|++
T Consensus 606 ~--e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i 678 (708)
T TIGR01193 606 S--EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKI 678 (708)
T ss_pred c--CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEE
Confidence 5 334589999999999999999999999999999999999999999999874 3689999999996 46789999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 046991 248 VLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~~ 266 (612)
++|++|+++..|+.+++.+
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999988754
No 272
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-40 Score=324.98 Aligned_cols=195 Identities=24% Similarity=0.397 Sum_probs=169.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|++
T Consensus 1 ml~~~~l~~~~------------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~ 60 (200)
T PRK13540 1 MLDVIELDFDY------------------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILF 60 (200)
T ss_pred CEEEEEEEEEe------------------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEE
Confidence 47899999887 345699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 98 NDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+|+++.. ..+++.++|++|+..+++.+||+||+.+..... . ...+++++++.+++.+..++.++ .
T Consensus 61 ~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~~------~ 127 (200)
T PRK13540 61 ERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----P--GAVGITELCRLFSLEHLIDYPCG------L 127 (200)
T ss_pred CCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----c--chHHHHHHHHHcCCchhhhCChh------h
Confidence 9988742 346678999999999888999999998764211 1 12468899999999887777776 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++.. .+.+|...
T Consensus 128 LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999999999999999865 48899999999863 46677654
No 273
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=8.7e-41 Score=334.53 Aligned_cols=211 Identities=25% Similarity=0.454 Sum_probs=173.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
..-+++++|+++.++. .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+
T Consensus 8 ~~~~l~~~~l~~~~~~---------------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~ 70 (226)
T cd03248 8 LKGIVKFQNVTFAYPT---------------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQ 70 (226)
T ss_pred cCceEEEEEEEEEeCC---------------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcE
Confidence 3456899999998831 1124699999999999999999999999999999999999976 7899
Q ss_pred EEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCH-HH--HHHHHHHHHHHc--CCccccccc
Q 046991 95 LLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRR-KQ--AASRVRGLLKEL--GLDHVASSR 166 (612)
Q Consensus 95 I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~--~~~~v~~~l~~l--gL~~~~~~~ 166 (612)
|.++|+++.. ...++.++|++|++.+++ .||+||+.+..... .... .+ ....++++++.+ |+++..++.
T Consensus 71 i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~ 147 (226)
T cd03248 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEK 147 (226)
T ss_pred EEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcC
Confidence 9999987632 345678999999998876 59999998753211 1001 01 112356788888 787766666
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++. +. .||+
T Consensus 148 ~~------~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~-~~-~~d~ 217 (226)
T cd03248 148 GS------QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLST-VE-RADQ 217 (226)
T ss_pred CC------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHH-HH-hCCE
Confidence 65 8999999999999999999999999999999999999999999999853 5899999999984 64 5999
Q ss_pred EEEEcCCeE
Q 046991 247 LVLLSNGFV 255 (612)
Q Consensus 247 v~lL~~G~i 255 (612)
+++|++|++
T Consensus 218 i~~l~~g~i 226 (226)
T cd03248 218 ILVLDGGRI 226 (226)
T ss_pred EEEecCCcC
Confidence 999999874
No 274
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.3e-40 Score=376.55 Aligned_cols=218 Identities=31% Similarity=0.521 Sum_probs=185.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++|++|.|+ +++++|+|+|+++++||.+||+||||||||||++.|.|+.+| .+|+
T Consensus 325 ~~~~I~f~~vsf~y~-----------------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~ 385 (567)
T COG1132 325 TIGSIEFENVSFSYP-----------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGE 385 (567)
T ss_pred CCCeEEEEEEEEEcC-----------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCe
Confidence 334599999999993 257899999999999999999999999999999999999987 7999
Q ss_pred EEECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-------Cccccc
Q 046991 95 LLVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG-------LDHVAS 164 (612)
Q Consensus 95 I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 164 (612)
|.+||++++ ...+|+.++||+|++.+|.. |++||+.++. +..++++ +.++++..+ +.+..|
T Consensus 386 I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~----~~at~ee----i~~a~k~a~~~d~I~~lp~g~d 456 (567)
T COG1132 386 ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGR----PDATDEE----IEEALKLANAHEFIANLPDGYD 456 (567)
T ss_pred EEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCC----CCCCHHH----HHHHHHHhChHHHHHhCccccc
Confidence 999999875 47789999999999999994 9999999863 1123333 333333332 344578
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
|.+| +....||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+|+++|.++. +. .+
T Consensus 457 t~vg--e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlst-i~-~a 530 (567)
T COG1132 457 TIVG--ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLST-IK-NA 530 (567)
T ss_pred ceec--CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhH-HH-hC
Confidence 9996 3445899999999999999999999999999999999999999999999875 46899999999973 54 49
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
|+|++|++|++++.|+.+++..
T Consensus 531 D~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 531 DRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred CEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999998754
No 275
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-40 Score=329.22 Aligned_cols=211 Identities=31% Similarity=0.403 Sum_probs=172.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.+.... +...++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.+
T Consensus 1 ml~~~~l~~~~~~~~-----------~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~ 67 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQ-----------QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILV 67 (224)
T ss_pred CEEEEeeEEEeeccc-----------CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEE
Confidence 378999999883110 001125799999999999999999999999999999999999977 6899999
Q ss_pred C--Ce--eCC---hh---h-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-ccc
Q 046991 98 N--DR--PMD---AE---H-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-ASS 165 (612)
Q Consensus 98 ~--g~--~~~---~~---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 165 (612)
+ |+ ++. .. . .++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+|+.+. .++
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (224)
T TIGR02324 68 RHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER--GVPREAARARARELLARLNIPERLWHL 145 (224)
T ss_pred ecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhhC
Confidence 8 43 332 11 1 2357999999999999999999998764322 12234445678899999999763 466
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||
T Consensus 146 ~~~------~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~-~~~~~~d 217 (224)
T TIGR02324 146 PPA------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEE-VRELVAD 217 (224)
T ss_pred Ccc------cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcc
Confidence 665 8999999999999999999999999999999999999999999999965 4899999999986 4778999
Q ss_pred eEEEEc
Q 046991 246 RLVLLS 251 (612)
Q Consensus 246 ~v~lL~ 251 (612)
+++.+.
T Consensus 218 ~i~~~~ 223 (224)
T TIGR02324 218 RVMDVT 223 (224)
T ss_pred eeEecC
Confidence 998763
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-40 Score=377.81 Aligned_cols=214 Identities=29% Similarity=0.515 Sum_probs=182.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++|.|+ +++++|+|+|+++++||.++|+|+||||||||+|+|+|+.+| .+|+|.+
T Consensus 334 ~I~~~~vsf~y~-----------------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i 394 (588)
T PRK13657 334 AVEFDDVSFSYD-----------------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILI 394 (588)
T ss_pred eEEEEEEEEEeC-----------------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEE
Confidence 699999999983 224599999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
||++++ .+.+++.++||+|++.+|+. |++||+.++. +..+ ++++.++++.+|+.+ -.||.+
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 999875 36788999999999999986 9999998641 1112 234556666666543 346666
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +..+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. .++|+|++||+++ ..+.+|++
T Consensus 466 ~--~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~--~~~~~D~i 539 (588)
T PRK13657 466 G--ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLS--TVRNADRI 539 (588)
T ss_pred c--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHH--HHHhCCEE
Confidence 5 2345799999999999999999999999999999999999999999999874 3789999999986 46889999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+.+++.
T Consensus 540 i~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 540 LVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987764
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.9e-40 Score=323.92 Aligned_cols=191 Identities=28% Similarity=0.408 Sum_probs=161.5
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.+|
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~ 62 (200)
T cd03217 1 LEIKDLHVSV------------------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFK 62 (200)
T ss_pred CeEEEEEEEe------------------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEEC
Confidence 4688998877 3456999999999999999999999999999999999995212379999999
Q ss_pred CeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 99 DRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 99 g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|+++.. .. .++.++|++|++.+++..|+++++ +....
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~------ 103 (200)
T cd03217 63 GEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNE------ 103 (200)
T ss_pred CEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH---------------------------------hhccc------
Confidence 998743 22 245699999999999888888766 01112
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh-ccCeEEEEcCC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE-LFDRLVLLSNG 253 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~-~~D~v~lL~~G 253 (612)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|||++||+++ .+.+ .+|++++|++|
T Consensus 104 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G 181 (200)
T cd03217 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDG 181 (200)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999975 4789999999997 4666 79999999999
Q ss_pred eEEEecChhhHHHHHH
Q 046991 254 FVVHNGTLNHLEERLK 269 (612)
Q Consensus 254 ~iv~~G~~~~~~~~f~ 269 (612)
+++..|+.+ +.+++.
T Consensus 182 ~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 182 RIVKSGDKE-LALEIE 196 (200)
T ss_pred EEEEEccHH-HHhhhc
Confidence 999999554 544443
No 278
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-40 Score=368.66 Aligned_cols=223 Identities=26% Similarity=0.430 Sum_probs=186.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.+. ..+++.+|+|+||++++||+++|+||||||||||||+|+|+.+| +.+|+|.
T Consensus 256 ~~l~~~~l~~~~~---------------~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~ 319 (500)
T TIGR02633 256 VILEARNLTCWDV---------------INPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVF 319 (500)
T ss_pred ceEEEeCCccccc---------------ccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEE
Confidence 4689999987651 00234699999999999999999999999999999999999974 2589999
Q ss_pred ECCeeCCh----hhhcccEEEEecCC---CcCCCCCHHHHHHHHHH--ccC-CCCCHHHHHHHHHHHHHHcCCcc-cccc
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDD---ALFPLLTVEETLMCSAL--LRL-TAGRRKQAASRVRGLLKELGLDH-VASS 165 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--l~~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 165 (612)
++|+++.. ...++.++|++|+. .+++.+||+||+.+... ... ......+.+++++++++.+++.+ ..++
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 399 (500)
T TIGR02633 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL 399 (500)
T ss_pred ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC
Confidence 99988742 33467899999995 58899999999987531 110 01123344567899999999974 5688
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||
T Consensus 400 ~~~------~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d 471 (500)
T TIGR02633 400 PIG------RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA-EVLGLSD 471 (500)
T ss_pred ccc------cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCC
Confidence 876 89999999999999999999999999999999999999999999999764 889999999998 5889999
Q ss_pred eEEEEcCCeEEEecChhh
Q 046991 246 RLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~ 263 (612)
++++|++|+++..++.++
T Consensus 472 ~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 472 RVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred EEEEEECCEEEEEEcccc
Confidence 999999999998776543
No 279
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.1e-40 Score=320.96 Aligned_cols=178 Identities=31% Similarity=0.508 Sum_probs=154.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-----hhhcccEEEEecCCC--c
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-----EHFRRISGYVTQDDA--L 120 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~--l 120 (612)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.. ..+++.++|++|++. +
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 45699999999999999999999999999999999999976 79999999988631 235678999999973 4
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEe
Q 046991 121 FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLID 200 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLD 200 (612)
+ ..||+||+.+..... ....++..++++++++.+||.+..++.+. .||||||||++||++|+.+|++++||
T Consensus 82 ~-~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL--GLSEAEVERRVREALTAVGASGLRERPTH------CLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCchhhhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 469999999865322 12344455678999999999988888876 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
|||+|||+.++..+.+.|+++++ .|+|||++||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 99999999999999999999975 4899999999986
No 280
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=331.51 Aligned_cols=196 Identities=32% Similarity=0.505 Sum_probs=178.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhhcccEEEEecCCCcCCCCCH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
++++..+.-.++||.|+||||||||+|+|+|+.+| ++|+|.+||+-+.. ..-++++|||+||-.+||.+||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 67888888679999999999999999999999987 79999999986521 2346889999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
+.||.|+.... .....+++.+.||++|..++++. .|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~--------~~~~fd~iv~lLGI~hLL~R~P~------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS--------MRAQFDQLVALLGIEHLLDRYPG------TLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc--------chHhHHHHHHHhCcHHHHhhCCC------ccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985321 34557889999999999999987 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHH
Q 046991 207 DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 207 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
|...+.+++..|++++++.+..|+.+||.+. |+.+++|+|++|++|++...|+.+++.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999999999999999998 7999999999999999999999998753
No 281
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.2e-40 Score=324.59 Aligned_cols=201 Identities=25% Similarity=0.379 Sum_probs=166.3
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|++++++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|
T Consensus 4 ~~~l~~~~l~~~~~~----------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i 65 (207)
T cd03369 4 HGEIEVENLSVRYAP----------------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKI 65 (207)
T ss_pred CCeEEEEEEEEEeCC----------------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeE
Confidence 346899999998820 124699999999999999999999999999999999999976 79999
Q ss_pred EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 96 LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 96 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
.++|+++. ....++.++|++|++.+++. |++||+.+.. .... +.+.+.++ .+..+
T Consensus 66 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~-----~~~~----~~~~~~l~-------~~~~~----- 123 (207)
T cd03369 66 EIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD-----EYSD----EEIYGALR-------VSEGG----- 123 (207)
T ss_pred EECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC-----CCCH----HHHHHHhh-------ccCCC-----
Confidence 99999863 23456789999999988875 9999996421 1111 22333343 23333
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. .|+|+|++||+++. +.. +|++++|++
T Consensus 124 -~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~-~~~-~d~v~~l~~ 198 (207)
T cd03369 124 -LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRT-IID-YDKILVMDA 198 (207)
T ss_pred -CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH-Hhh-CCEEEEEEC
Confidence 3899999999999999999999999999999999999999999999984 37899999999974 654 999999999
Q ss_pred CeEEEecCh
Q 046991 253 GFVVHNGTL 261 (612)
Q Consensus 253 G~iv~~G~~ 261 (612)
|+++..|++
T Consensus 199 g~i~~~g~~ 207 (207)
T cd03369 199 GEVKEYDHP 207 (207)
T ss_pred CEEEecCCC
Confidence 999888753
No 282
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.3e-40 Score=374.85 Aligned_cols=216 Identities=28% Similarity=0.464 Sum_probs=185.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++++++. .++++|+|+|+++++||.++|+|+||||||||+++|+|+.+| .+|+|.+
T Consensus 330 ~i~~~~v~f~y~~----------------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i 391 (571)
T TIGR02203 330 DVEFRNVTFRYPG----------------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILL 391 (571)
T ss_pred eEEEEEEEEEcCC----------------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEE
Confidence 5999999999831 235699999999999999999999999999999999999987 7899999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
||.+++ .+.+++.++||+|++.+|+. |++||+.++. + ++..+++++++++.+|+.+ -.||.+
T Consensus 392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i 463 (571)
T TIGR02203 392 DGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----T---EQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463 (571)
T ss_pred CCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----C---CCCCHHHHHHHHHHcChHHHHHhCcCccccee
Confidence 998864 36788899999999999987 9999998642 1 0112345777788887754 346777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +..+.||||||||++|||+++.+|++++||||||+||+.++..+++.|++++ .++|+|++||+++ ..+.||+|
T Consensus 464 ~--~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~--~~~~~D~i 537 (571)
T TIGR02203 464 G--ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLS--TIEKADRI 537 (571)
T ss_pred c--CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhH--HHHhCCEE
Confidence 5 2345799999999999999999999999999999999999999999999874 3689999999985 57889999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+.+++.
T Consensus 538 i~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 538 VVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999998764
No 283
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.5e-40 Score=364.39 Aligned_cols=204 Identities=25% Similarity=0.432 Sum_probs=176.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCC---CcCCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDD---ALFPL 123 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~ 123 (612)
+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.. +..++.+|||+|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 69999999999999999999999999999999999976 78999999988642 23456799999996 57888
Q ss_pred CCHHHHHHHHHHccCC---C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEE
Q 046991 124 LTVEETLMCSALLRLT---A-GRRKQAASRVRGLLKELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVL 198 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~---~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lll 198 (612)
+||+||+.+....... . ...++.+++++++++.+||. +..++.++ .||||||||++||++|+.+|++|+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG------LLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh------hCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999999875311100 0 12334456789999999995 67788886 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 199 IDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 199 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
|||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999754 899999999998 58999999999999999999988765
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.1e-40 Score=319.18 Aligned_cols=177 Identities=37% Similarity=0.652 Sum_probs=154.8
Q ss_pred EEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECC
Q 046991 20 ETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND 99 (612)
Q Consensus 20 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g 99 (612)
+++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|
T Consensus 1 ~~~~l~~~~------------------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g 60 (180)
T cd03214 1 EVENLSVGY------------------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDG 60 (180)
T ss_pred CeeEEEEEE------------------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC
Confidence 467888777 335699999999999999999999999999999999999976 799999999
Q ss_pred eeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 100 RPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 100 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+++.. ..+++.++|++| +++.+|+.+..++.+. .|
T Consensus 61 ~~~~~~~~~~~~~~i~~~~q------------------------------------~l~~~gl~~~~~~~~~------~L 98 (180)
T cd03214 61 KDLASLSPKELARKIAYVPQ------------------------------------ALELLGLAHLADRPFN------EL 98 (180)
T ss_pred EECCcCCHHHHHHHHhHHHH------------------------------------HHHHcCCHhHhcCCcc------cC
Confidence 98742 334556788887 6677788776666665 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|+++ ++.+++|++++|++|+++
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIV 177 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997644789999999998 478999999999999998
Q ss_pred Eec
Q 046991 257 HNG 259 (612)
Q Consensus 257 ~~G 259 (612)
+.|
T Consensus 178 ~~~ 180 (180)
T cd03214 178 AQG 180 (180)
T ss_pred ecC
Confidence 654
No 285
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7e-40 Score=368.64 Aligned_cols=217 Identities=28% Similarity=0.483 Sum_probs=180.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|++++|+. +++++|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 315 ~~i~~~~v~~~y~~----------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~ 376 (544)
T TIGR01842 315 GHLSVENVTIVPPG----------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVR 376 (544)
T ss_pred CeEEEEEEEEEcCC----------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEE
Confidence 36999999999831 235799999999999999999999999999999999999977 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-------HVASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ 166 (612)
+||+++. ...+++.++||+|++.+++. |++||+.+.. +..+++ ++.+.++..++. +-.|+.
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~ 447 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG----ENADPE----KIIEAAKLAGVHELILRLPDGYDTV 447 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC----CCCCHH----HHHHHHHHhChHHHHHhCccccccc
Confidence 9999874 35678899999999999987 9999997532 111222 233344444433 234566
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+++|++++|||||+|||+.++..+.+.|+++.. .|+|+|+++|+++ ..+.||+
T Consensus 448 ~~--~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 448 IG--PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred cC--CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCE
Confidence 64 33468999999999999999999999999999999999999999999999853 4789999999996 4578999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|++++.|+.+++.
T Consensus 523 i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVL 541 (544)
T ss_pred EEEEECCEEEeeCCHHHHh
Confidence 9999999999999988764
No 286
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-39 Score=316.22 Aligned_cols=161 Identities=33% Similarity=0.577 Sum_probs=145.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCC---CcCCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDD---ALFPL 123 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~ 123 (612)
+|+++|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 89999999999999999999999999999999999977 79999999988742 23567899999984 57888
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPT 203 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPt 203 (612)
+|++||+.+... ||||||||++||++|+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976310 7999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 204 SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 204 sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
+|||+.++..+.+.|+++++ .|+|+|+++|+++ ++.++||++++|++|++
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELAD-AGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999975 4889999999997 58899999999999974
No 287
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=350.87 Aligned_cols=197 Identities=20% Similarity=0.320 Sum_probs=171.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 5699999999999999999999999999999999999977 799999999752 1223445677789999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
|+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~--~~~~~e~~e~i~elLe~lgL~~~ld~~~~------~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM--GLTKEKIKEIIPEIIEFADIGKFIYQPVK------TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc--CCCHHHHHHHHHHHHHHcCChhHhhCCcc------cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754322 12344555678899999999988888876 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHH
Q 046991 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEER 267 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 267 (612)
.++..+++.|+++++ .|+|||++||+++ ++.++||++++|++|+++..|+++++.+.
T Consensus 177 ~sr~~LlelL~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 177 TFTKKCLDKMNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999864 5889999999998 58899999999999999999999887543
No 288
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-41 Score=309.18 Aligned_cols=195 Identities=31% Similarity=0.486 Sum_probs=177.1
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPL 123 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~ 123 (612)
++..||+++|+.+++||..+|.||||||||||+|+++.+.+| ++|++++.|++++ ++.+|.+++||.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 567899999999999999999999999999999999999987 8999999999975 57899999999999999998
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
||++|+.|...++... .+.++..++++++++.+. .++.+. .||||||||++|+|.|..-|+||+||||
T Consensus 92 -tVeDNlifP~~~r~rr----~dr~aa~~llar~~l~~~~L~k~it------~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR----PDRAAALDLLARFALPDSILTKNIT------ELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred -chhhccccchHHhccC----CChHHHHHHHHHcCCchhhhcchhh------hccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999988776432 245677889999999865 455554 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||+||+.++..|-++|.++.+++++.++.+|||+. +..+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 99999999999999999998888999999999998 57899999999999875
No 289
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.9e-40 Score=371.95 Aligned_cols=217 Identities=27% Similarity=0.456 Sum_probs=184.2
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|++++|+. ..++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.
T Consensus 336 ~~i~~~~v~f~y~~---------------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~ 398 (576)
T TIGR02204 336 GEIEFEQVNFAYPA---------------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRIL 398 (576)
T ss_pred ceEEEEEEEEECCC---------------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEE
Confidence 36999999999841 1236799999999999999999999999999999999999987 689999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------cccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ 166 (612)
+||.+++ ...+++.++|+||++.+|+. |++||+.++. +..+ ++++.++++.+|+.+. .++.
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~ 469 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----PDAT----DEEVEAAARAAHAHEFISALPEGYDTY 469 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCce
Confidence 9999874 35678899999999999986 9999997641 1112 3456777787777543 3555
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||+++.+|++++||||||+||+.++..+++.|+++. .++|+|++||+++ ..+.+|+
T Consensus 470 i~--~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~--~~~~~d~ 543 (576)
T TIGR02204 470 LG--ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLA--TVLKADR 543 (576)
T ss_pred eC--CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCE
Confidence 64 3345799999999999999999999999999999999999999999999984 3799999999985 4678999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
++.|++|+++..|+.+++.
T Consensus 544 vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 544 IVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEEEECCEEEeeecHHHHH
Confidence 9999999999999988763
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.2e-39 Score=325.88 Aligned_cols=195 Identities=32% Similarity=0.495 Sum_probs=166.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcC--CCCCHHHHHHHHH
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALF--PLLTVEETLMCSA 134 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~ 134 (612)
+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||+++. ..++.++|++|++.++ ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46889999999999999999999999999976 7999999998763 3457799999998764 3479999998753
Q ss_pred Hcc--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046991 135 LLR--LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASAL 212 (612)
Q Consensus 135 ~l~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 212 (612)
... ......++..++++++++.+|+++..++.++ +||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~ 150 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 211 0001122344678999999999988888776 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 213 HVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 213 ~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
.+.+.|+++++ .|+|+|++||+++ ++.+.||+++++ +|++++.|+.+++
T Consensus 151 ~l~~~l~~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 151 LLTELFIELAG-AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99999999975 4899999999998 588999999999 8999999998775
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-39 Score=314.89 Aligned_cols=176 Identities=32% Similarity=0.554 Sum_probs=154.7
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 i~~~~~~~~~~~----------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~ 62 (178)
T cd03247 1 LSINNVSFSYPE----------------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLD 62 (178)
T ss_pred CEEEEEEEEeCC----------------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEEC
Confidence 478899988720 123699999999999999999999999999999999999976 79999999
Q ss_pred CeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 99 DRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 99 g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
|+++.. ..+++.++|++|++.+++ .|++||+ +. .|
T Consensus 63 g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------~~------~L 99 (178)
T cd03247 63 GVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------GR------RF 99 (178)
T ss_pred CEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------cc------cC
Confidence 997642 345678999999998876 5998887 32 79
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++|||+|+.+|++++|||||+|||+.++..+++.|++++ + ++|||++||+++. + +.+|++++|++|+++
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~ 175 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTG-I-EHMDKILFLENGKII 175 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999984 3 7899999999974 5 479999999999998
Q ss_pred Eec
Q 046991 257 HNG 259 (612)
Q Consensus 257 ~~G 259 (612)
+.|
T Consensus 176 ~~~ 178 (178)
T cd03247 176 MQG 178 (178)
T ss_pred ecC
Confidence 754
No 292
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.8e-40 Score=378.68 Aligned_cols=216 Identities=26% Similarity=0.493 Sum_probs=183.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|++++|+. +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+.+| .+|+|+
T Consensus 454 ~~i~~~~vsf~y~~----------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~ 515 (694)
T TIGR01846 454 GAITFENIRFRYAP----------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVL 515 (694)
T ss_pred CeEEEEEEEEEcCC----------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEE
Confidence 36999999999831 235699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------ccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ 166 (612)
+||++++ .+.+|+.++||+|++.+++. |++||+.++. +..+ .+++.++++..|+.+ -.||.
T Consensus 516 idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~ 586 (694)
T TIGR01846 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTE 586 (694)
T ss_pred ECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcE
Confidence 9999874 36788999999999999986 9999997631 1112 234556666666543 35677
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +....||||||||++|||||+++|++++||||||+||+.+...+.+.|+++. .++|+|++||+++ ..+.||+
T Consensus 587 i~--~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ 660 (694)
T TIGR01846 587 VG--EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDR 660 (694)
T ss_pred ec--CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCE
Confidence 75 2346899999999999999999999999999999999999999999999984 4789999999996 3467999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|++++.|+.+++.
T Consensus 661 ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELL 679 (694)
T ss_pred EEEEeCCEEEEeCCHHHHH
Confidence 9999999999999988764
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-39 Score=313.33 Aligned_cols=170 Identities=32% Similarity=0.581 Sum_probs=151.4
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|++++++ ..++.+++++|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 i~~~~l~~~~~----------------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~ 62 (173)
T cd03246 1 LEVENVSFRYP----------------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLD 62 (173)
T ss_pred CEEEEEEEEcC----------------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEEC
Confidence 46889988772 0224699999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
|+++.. ..+++.++|++|++.+++. ||+||+
T Consensus 63 g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l--------------------------------------------- 96 (173)
T cd03246 63 GADISQWDPNELGDHVGYLPQDDELFSG-SIAENI--------------------------------------------- 96 (173)
T ss_pred CEEcccCCHHHHHhheEEECCCCccccC-cHHHHC---------------------------------------------
Confidence 988642 4566789999999988875 999887
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+ +.||++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 799999999999999999999999999999999999999999999975 5899999999997 35 68999999999974
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-39 Score=342.07 Aligned_cols=188 Identities=30% Similarity=0.467 Sum_probs=167.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHH
Q 046991 67 IAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQ 145 (612)
Q Consensus 67 IlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~ 145 (612)
|+||||||||||||+|+|+.+| .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.|....+ ..++++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR--KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc--CCCHHH
Confidence 6899999999999999999977 79999999998743 234578999999999999999999999876432 223445
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 046991 146 AASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ 225 (612)
Q Consensus 146 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~ 225 (612)
.+++++++++.+||.+..++.+. +|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++.
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPH------QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChh------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 56788999999999988888876 899999999999999999999999999999999999999999999998766
Q ss_pred CcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 226 GKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 226 g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+|+|++|||++ ++.++||++++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999998 589999999999999999999998764
No 295
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=362.75 Aligned_cols=205 Identities=22% Similarity=0.407 Sum_probs=176.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCC---CcCC
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDD---ALFP 122 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~ 122 (612)
.+++|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 489999999999999999999999999999999999976 78999999987642 23457899999996 4888
Q ss_pred CCCHHHHHHHHHHccC-C-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEE
Q 046991 123 LLTVEETLMCSALLRL-T-A--GRRKQAASRVRGLLKELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVV 197 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~-~-~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ll 197 (612)
.+|+.||+.+...... . . ....+.+++++++++.+|+. +..++.++ .|||||||||+||++|+.+|++|
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM------NLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc------cCCHHHHHHHHHHHHHccCCCEE
Confidence 9999999987532110 0 0 01233346788999999994 67888887 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 198 LIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 198 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
||||||+|||+.++..++++|+++++ .|.|||++|||++ ++.++||++++|++|++++.|++++.
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999975 4889999999998 58999999999999999999987763
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.5e-39 Score=368.51 Aligned_cols=214 Identities=25% Similarity=0.440 Sum_probs=178.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++++|+ +++++|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 334 ~i~~~~v~~~y~-----------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~ 394 (585)
T TIGR01192 334 AVEFRHITFEFA-----------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILI 394 (585)
T ss_pred eEEEEEEEEECC-----------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEE
Confidence 599999999883 224589999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
||+++. .+.+++.++||+|++.+++. |++||+.++. +..+++ ++.++++..++.+ ..++.+
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~----~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGR----EGATDE----EVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCC----CCCCHH----HHHHHHHHhCcHHHHHhccccccchh
Confidence 999864 35678899999999998875 9999998742 111222 2334444444432 345556
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....||||||||++|||+|+.+|++++|||||++||+.++..+.+.|+++. .++|+|++||+++. + +.||++
T Consensus 466 ~--~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~-~-~~~d~i 539 (585)
T TIGR01192 466 G--ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST-V-RNADLV 539 (585)
T ss_pred c--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH-H-HcCCEE
Confidence 4 3345899999999999999999999999999999999999999999999874 47899999999963 4 679999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+.+++.
T Consensus 540 ~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 540 LFLDQGRLIEKGSFQELI 557 (585)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988764
No 297
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=342.34 Aligned_cols=216 Identities=30% Similarity=0.429 Sum_probs=194.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++.+|+++.| ++..+++|||+++++||+.||+|+||||||||+++|.|.++| ++|+|.
T Consensus 3 ~~l~~~~itK~f------------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~ 62 (501)
T COG3845 3 PALEMRGITKRF------------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIR 62 (501)
T ss_pred ceEEEeccEEEc------------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEE
Confidence 357888888877 567799999999999999999999999999999999999987 899999
Q ss_pred ECCeeCC---h-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 97 VNDRPMD---A-EHFRRISGYVTQDDALFPLLTVEETLMCSALLR-LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~---~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+||+++. + +..+..||+|+|+..+++++||.||+..+..-. ....+.++.+++++++.++.||+-..|.+|+
T Consensus 63 v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~--- 139 (501)
T COG3845 63 VDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA--- 139 (501)
T ss_pred ECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee---
Confidence 9999874 2 567788999999999999999999999876432 1222567788999999999999988889997
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||-||||||.|-++|..+|++|+|||||+-|-|....++++.|+++++ .|+|||++||... |+.++|||+.+|.
T Consensus 140 ---dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~-Ev~~iaDrvTVLR 214 (501)
T COG3845 140 ---DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLK-EVMAIADRVTVLR 214 (501)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhhCeeEEEe
Confidence 8999999999999999999999999999999999999999999999975 5999999999998 7999999999999
Q ss_pred CCeEEEecC
Q 046991 252 NGFVVHNGT 260 (612)
Q Consensus 252 ~G~iv~~G~ 260 (612)
+|+++..-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999886655
No 298
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4e-40 Score=308.71 Aligned_cols=220 Identities=30% Similarity=0.467 Sum_probs=195.1
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++++ ++-.+|+++||++.+||+-+|+|||||||||++++|+|..+| .+|+++
T Consensus 4 ~iL~~~~vsVsF------------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~ 63 (249)
T COG4674 4 IILYLDGVSVSF------------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVL 63 (249)
T ss_pred ceEEEeceEEEE------------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEE
Confidence 578999999988 667799999999999999999999999999999999999977 789999
Q ss_pred ECC-eeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCcccccc
Q 046991 97 VND-RPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT------AGRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 97 ~~g-~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
++| .+++. +-.|..||--+|.|..|+.+||+|||..+..-..+ ...+.+.+++++++|+..||.+.++.
T Consensus 64 f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~ 143 (249)
T COG4674 64 FDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR 143 (249)
T ss_pred EcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh
Confidence 999 66643 33566799999999999999999999987532110 01234556789999999999999998
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.-+ .||.|||||+.|++-++++|++|+||||++|+-.....+.-++|+++|. +++|+++.||+.. +.+++|
T Consensus 144 ~A~------~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~ 214 (249)
T COG4674 144 LAA------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIAD 214 (249)
T ss_pred hhh------hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhh
Confidence 877 8999999999999999999999999999999999999999999999974 5799999999997 999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
+|.+|++|.+...|+.+++.
T Consensus 215 ~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 215 KVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred eeEEEeccceeecccHHHhh
Confidence 99999999999999998864
No 299
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-39 Score=367.48 Aligned_cols=215 Identities=20% Similarity=0.429 Sum_probs=181.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++++|+ .+++.+|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 313 ~I~~~~v~~~y~----------------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~ 374 (569)
T PRK10789 313 ELDVNIRQFTYP----------------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRF 374 (569)
T ss_pred cEEEEEEEEECC----------------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEE
Confidence 589999999883 1235699999999999999999999999999999999999987 7999999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-------ccccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-------HVASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v 167 (612)
||+++. ...+++.++||+|++.+++. |++||+.++. +..++ ++++++++..++. +-.|+.+
T Consensus 375 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~ 445 (569)
T PRK10789 375 HDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEV 445 (569)
T ss_pred CCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----CCCCH----HHHHHHHHHcCCHHHHHhCcCccccee
Confidence 999864 35678899999999999986 9999997642 11122 3445556666654 3346777
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....||||||||++|||+|+++|++++|||||++||+.+...+.+.|+++. .|+|+|+++|+++ ..+.+|++
T Consensus 446 ~--~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i 519 (569)
T PRK10789 446 G--ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEI 519 (569)
T ss_pred c--CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEE
Confidence 5 3345899999999999999999999999999999999999999999999974 4799999999996 45779999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|+++..|+.+++.
T Consensus 520 ~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 520 LVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred EEEeCCEEEEecCHHHHH
Confidence 999999999999988764
No 300
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=360.62 Aligned_cols=220 Identities=30% Similarity=0.443 Sum_probs=190.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++.++. ..+.+.+|+|+||++++||+++|+||||||||||+|+|+|+.++ .+|+|.+
T Consensus 4 ~l~~~nl~~~y~~--------------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~ 67 (648)
T PRK10535 4 LLELKDIRRSYPS--------------GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRV 67 (648)
T ss_pred EEEEeeEEEEeCC--------------CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEE
Confidence 6999999998831 11235699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hh----hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 98 NDRPMDA---EH----FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 98 ~g~~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
||+++.. ++ .++.++|++|++.+++.+|+.||+.+..... ....++.++++.++++.+||.+..++.++
T Consensus 68 ~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-- 143 (648)
T PRK10535 68 AGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA--GLERKQRLLRAQELLQRLGLEDRVEYQPS-- 143 (648)
T ss_pred CCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhhhcCCcc--
Confidence 9998753 22 2468999999999999999999998765322 12345566788999999999988888876
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.|||||+||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||+++. + +.||++++|
T Consensus 144 ----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~-~-~~~d~i~~l 216 (648)
T PRK10535 144 ----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQV-A-AQAERVIEI 216 (648)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHH-H-HhCCEEEEE
Confidence 8999999999999999999999999999999999999999999999865 58999999999873 4 679999999
Q ss_pred cCCeEEEecChhhH
Q 046991 251 SNGFVVHNGTLNHL 264 (612)
Q Consensus 251 ~~G~iv~~G~~~~~ 264 (612)
++|++++.|++++.
T Consensus 217 ~~G~i~~~g~~~~~ 230 (648)
T PRK10535 217 RDGEIVRNPPAQEK 230 (648)
T ss_pred ECCEEEeecCcccc
Confidence 99999999988653
No 301
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.5e-39 Score=359.06 Aligned_cols=204 Identities=23% Similarity=0.364 Sum_probs=173.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCC---CcCCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDD---ALFPL 123 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~ 123 (612)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 59999999999999999999999999999999999976 68999999988642 12356799999984 48888
Q ss_pred CCHHHHHHHHHHccCC-CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 124 LTVEETLMCSALLRLT-AGRRKQAASRVRGLLKELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
+|+.||+......... .....+.+++++++++.+||+ +..+++++ .|||||||||+||++|+.+|++|||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR------TLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc------cCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 9999999643111001 011223346788999999997 67888886 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
||+|||+.++..+.+.|+++++ .|.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999976 4899999999998 58999999999999999998877653
No 302
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.1e-39 Score=395.83 Aligned_cols=220 Identities=26% Similarity=0.427 Sum_probs=185.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--------
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-------- 89 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-------- 89 (612)
.|+++||+|+|+.+ +++++|+|+||++++||.+||+||||||||||+++|.|+++|.
T Consensus 1165 ~I~f~nVsF~Y~~~---------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~ 1229 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR---------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFK 1229 (1466)
T ss_pred eEEEEEEEEECCCC---------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccc
Confidence 59999999999421 2357999999999999999999999999999999999999872
Q ss_pred --------------------------------------------ceeeEEEECCeeCC---hhhhcccEEEEecCCCcCC
Q 046991 90 --------------------------------------------KVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFP 122 (612)
Q Consensus 90 --------------------------------------------~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~ 122 (612)
+.+|+|++||+++. .+.+|+.+|||+|++.+|+
T Consensus 1230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~ 1309 (1466)
T PTZ00265 1230 NEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN 1309 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc
Confidence 15899999999874 4678999999999999997
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCccChHHHHHHHHHHHHhhCCC
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGL-------DHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA 195 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ 195 (612)
. |++|||.++. +..++ +.++++++..++ .+-.||.|| +....||||||||++|||||+++|+
T Consensus 1310 g-TIreNI~~g~----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VG--e~G~~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265 1310 M-SIYENIKFGK----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVG--PYGKSLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred c-cHHHHHhcCC----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccC--CCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 5 9999999862 12222 345666666655 445688886 3445799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC----CeEE-EecChhhHH
Q 046991 196 VVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN----GFVV-HNGTLNHLE 265 (612)
Q Consensus 196 lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~----G~iv-~~G~~~~~~ 265 (612)
||+||||||+||+.+...|.+.|+++.+..++|+|+++|+++ ..+.||+|++|++ |+++ +.|+.+++.
T Consensus 1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999999999985335899999999996 4678999999999 9955 899998875
No 303
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-39 Score=314.83 Aligned_cols=219 Identities=31% Similarity=0.477 Sum_probs=190.7
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++|+++.+ ++|+||+|+|++|++||-.+|+|||||||||||++++|..+| .+|.
T Consensus 28 ~~~li~l~~v~v~r------------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~ 87 (257)
T COG1119 28 NEPLIELKNVSVRR------------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGD 87 (257)
T ss_pred CcceEEecceEEEE------------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCc
Confidence 34569999999887 678999999999999999999999999999999999999987 5999
Q ss_pred EEECCeeCCh----hhhcccEEEEecC--CCcCCCCCHHHHHHHH--HHccCCC-CCHHHHHHHHHHHHHHcCCcccccc
Q 046991 95 LLVNDRPMDA----EHFRRISGYVTQD--DALFPLLTVEETLMCS--ALLRLTA-GRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 95 I~~~g~~~~~----~~~~~~i~yv~Q~--~~l~~~lTv~E~l~~~--~~l~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
+.+.|++... .++|+.||+|.-+ ..+.+..+|+|-+.-+ +...... ...++..+++..+++.+|+.+.+++
T Consensus 88 ~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r 167 (257)
T COG1119 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR 167 (257)
T ss_pred eeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC
Confidence 9999998743 5689999999754 3456677898887533 2222222 2456677889999999999999999
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEEccCCchHHHhcc
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN-QGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tii~~~H~~~~~i~~~~ 244 (612)
..+ .||-||||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. .+.++|++||+++ |+...+
T Consensus 168 ~~~------~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~ 240 (257)
T COG1119 168 PFG------SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCF 240 (257)
T ss_pred chh------hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hccccc
Confidence 998 89999999999999999999999999999999999999999999999753 2679999999998 699999
Q ss_pred CeEEEEcCCeEEEecC
Q 046991 245 DRLVLLSNGFVVHNGT 260 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~ 260 (612)
++++++++|+++++|.
T Consensus 241 th~lll~~g~v~~~g~ 256 (257)
T COG1119 241 THRLLLKEGEVVAQGK 256 (257)
T ss_pred ceEEEeeCCceeeccc
Confidence 9999999999999874
No 304
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4e-39 Score=317.56 Aligned_cols=194 Identities=28% Similarity=0.499 Sum_probs=153.8
Q ss_pred EEEeeeEEEEecccccccceecccccccC--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKD--PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
++++||++.+. ..+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 1 l~~~~l~~~~~---------------~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWD---------------SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVS 63 (204)
T ss_pred CEEeEEEEecC---------------CCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEE
Confidence 47899998872 111 13699999999999999999999999999999999999976 799999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccC
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS-------SRIGG 169 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~ 169 (612)
++| .++|++|++.+++ .|++||+.+.... .. ++..+.++.+++.+..+ +..
T Consensus 64 ~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~~-----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 121 (204)
T cd03250 64 VPG----------SIAYVSQEPWIQN-GTIRENILFGKPF-----DE----ERYEKVIKACALEPDLEILPDGDLTEI-- 121 (204)
T ss_pred EcC----------EEEEEecCchhcc-CcHHHHhccCCCc-----CH----HHHHHHHHHcCcHHHHHhccCccccee--
Confidence 998 5999999998885 6999999874211 11 12233344444432221 111
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT-LLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+.....||||||||++||++|+.+|++++|||||+|||+.++..+.+ +++++++ .|+|||++||+++. +.. +|+++
T Consensus 122 ~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~-~~~-~d~i~ 198 (204)
T cd03250 122 GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQL-LPH-ADQIV 198 (204)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHH-Hhh-CCEEE
Confidence 12235899999999999999999999999999999999999999998 5666654 48999999999973 665 99999
Q ss_pred EEcCCe
Q 046991 249 LLSNGF 254 (612)
Q Consensus 249 lL~~G~ 254 (612)
+|++|+
T Consensus 199 ~l~~G~ 204 (204)
T cd03250 199 VLDNGR 204 (204)
T ss_pred EEeCCC
Confidence 999985
No 305
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-38 Score=311.17 Aligned_cols=193 Identities=20% Similarity=0.288 Sum_probs=163.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++.+++ +|+++++||+++|+||||||||||+++|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~~------------------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~ 59 (195)
T PRK13541 1 MLSLHQLQFNI------------------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYY 59 (195)
T ss_pred CeEEEEeeEEE------------------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 37899999887 2344555 9999999999999999999999999999999977 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
+|.++.... ++.++|++|++.+++.+||+||+.+..... ...++++++++.+++.+..++.++ .||
T Consensus 60 ~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~------~LS 125 (195)
T PRK13541 60 KNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-------NSAETLYAAIHYFKLHDLLDEKCY------SLS 125 (195)
T ss_pred CCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-------ccHHHHHHHHHHcCCHhhhccChh------hCC
Confidence 999875322 356899999988888899999998764321 123467888999999887887776 899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 178 GGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++.++ .|+|+|+++|+++. .+.+|-+.
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccc--cchhheec
Confidence 9999999999999999999999999999999999999999987654 58999999999973 34567553
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.1e-39 Score=355.73 Aligned_cols=219 Identities=23% Similarity=0.342 Sum_probs=177.6
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ..+|+
T Consensus 257 ~~~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~ 317 (490)
T PRK10938 257 NEPRIVLNNGVVSY------------------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSND 317 (490)
T ss_pred CCceEEEeceEEEE------------------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCe
Confidence 34579999999888 345699999999999999999999999999999999998643 25899
Q ss_pred EEECCeeCCh----hhhcccEEEEecCCCcCC--CCCHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHHHcCCcc-cccc
Q 046991 95 LLVNDRPMDA----EHFRRISGYVTQDDALFP--LLTVEETLMCSALL--RLTAGRRKQAASRVRGLLKELGLDH-VASS 165 (612)
Q Consensus 95 I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~--~lTv~E~l~~~~~l--~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 165 (612)
|.++|++... ...++.++|++|++.++. ..|++|++.+.... .......++.+++++++++.+||.+ ..++
T Consensus 318 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 397 (490)
T PRK10938 318 LTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA 397 (490)
T ss_pred EEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC
Confidence 9999986531 234577999999976543 35777776543210 1111112233567899999999987 7788
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh-cc
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE-LF 244 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~-~~ 244 (612)
.++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.+.|||++|||++ ++.+ ++
T Consensus 398 ~~~------~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~ 470 (490)
T PRK10938 398 PFH------SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACIT 470 (490)
T ss_pred chh------hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhh
Confidence 876 899999999999999999999999999999999999999999999998654457999999998 4766 58
Q ss_pred CeEEEEcCCeEEEec
Q 046991 245 DRLVLLSNGFVVHNG 259 (612)
Q Consensus 245 D~v~lL~~G~iv~~G 259 (612)
|++++|++|+++..-
T Consensus 471 d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 471 HRLEFVPDGDIYRYV 485 (490)
T ss_pred eeEEEecCCceEEee
Confidence 999999999987653
No 307
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-39 Score=370.34 Aligned_cols=217 Identities=28% Similarity=0.457 Sum_probs=190.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++||+|.||.+ .+.+||+|+|+++++|+.+||+|||||||||.+.+|-..++| ++|+|.+
T Consensus 987 ~I~~~~V~F~YPsR---------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~I 1049 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP--DAGKVKI 1049 (1228)
T ss_pred EEEEeeeEeeCCCC---------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEE
Confidence 59999999999743 567899999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH-------cCCcccccccc
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKE-------LGLDHVASSRI 167 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~-------lgL~~~~~~~v 167 (612)
||++++. +.+|+++|.|.|+|.||.. |++||+.|+. .+ .+.+| +.++++. .+|.+-.||.|
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~---vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~v 1120 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE---VSEEE----IIEAAKLANAHNFISSLPQGYDTRV 1120 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC---CCHHH----HHHHHHHhhhHHHHhcCcCcccCcc
Confidence 9998753 7789999999999999987 9999999981 11 23333 3333332 36778899999
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +...+||||||||++||||+++||+||||||.||+||+++.+.+-+.|.+.. .|+|.|++.|.++ ..+.||.|
T Consensus 1121 G--erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I 1194 (1228)
T KOG0055|consen 1121 G--ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVI 1194 (1228)
T ss_pred C--cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEE
Confidence 6 4456999999999999999999999999999999999999999999999974 4899999999997 46899999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 046991 248 VLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~~ 266 (612)
.++++|++++.|+.+++.+
T Consensus 1195 ~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1195 AVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEECCEEEecccHHHHHh
Confidence 9999999999999998865
No 308
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.4e-39 Score=336.35 Aligned_cols=238 Identities=28% Similarity=0.440 Sum_probs=199.7
Q ss_pred CCCCCCCCCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 046991 3 LPVRAPVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEIL 82 (612)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L 82 (612)
.|..+|.-..-.+.-.|.++++++-- +..++++|+|+||.+.+||.+||+||||||||||.|+|
T Consensus 319 ~p~~~~~m~LP~P~g~L~Ve~l~~~P----------------Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 319 LPAAAERMPLPAPQGALSVERLTAAP----------------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred CccccCCCCCCCCCceeeEeeeeecC----------------CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHH
Confidence 56666666665677889999999732 23568899999999999999999999999999999999
Q ss_pred HcCCCCCceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHH-----HHHHHHHH
Q 046991 83 AGKISSRKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQA-----ASRVRGLL 154 (612)
Q Consensus 83 ~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~-----~~~v~~~l 154 (612)
.|..+| .+|.|.+||.+++ ++++-++|||.||+-.+|+. ||.||+.- +.. ..+.+.. ...|.|++
T Consensus 383 vG~w~p--~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaR---f~~-~~d~~kIieAA~lAgvHelI 455 (580)
T COG4618 383 VGIWPP--TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIAR---FGE-EADPEKVIEAARLAGVHELI 455 (580)
T ss_pred Hccccc--CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHh---ccc-cCCHHHHHHHHHHcChHHHH
Confidence 999987 7999999998874 47788999999999999998 99999952 221 1122211 11233443
Q ss_pred HHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc
Q 046991 155 KELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 155 ~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 234 (612)
+.+.+-.||.+|+ ....||||||||+++||||-.+|.+++||||-|+||......+.+.|.+.. +.|.|+|+++|
T Consensus 456 --l~lP~GYdT~iG~--~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaH 530 (580)
T COG4618 456 --LRLPQGYDTRIGE--GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAH 530 (580)
T ss_pred --HhCcCCccCccCC--CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEec
Confidence 4667889999973 345899999999999999999999999999999999999999999999986 46889999999
Q ss_pred CCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHh
Q 046991 235 QPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS 270 (612)
Q Consensus 235 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 270 (612)
.|+ +...+|+|++|++|++-.+|+.+|+...+..
T Consensus 531 RPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 531 RPS--ALASVDKILVLQDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CHH--HHhhcceeeeecCChHHhcCCHHHHHHHhcC
Confidence 996 6899999999999999999999999877653
No 309
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=317.60 Aligned_cols=242 Identities=30% Similarity=0.399 Sum_probs=199.6
Q ss_pred ceEEEeeeEEEEeccccc--ccceecc-cccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee
Q 046991 17 CRLETKNLSYKLCSKFDE--FNWVYCG-VTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~--~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G 93 (612)
.++..+||++.|+...+. .....++ .+.++....+.+||||+|++|++++++|||||||||+||+|+|++.| ++|
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G 79 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSG 79 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCC
Confidence 357788888777532211 1111111 11233345699999999999999999999999999999999999987 799
Q ss_pred EEEECCeeCC--hhhhcccEEEEe-cCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 94 KLLVNDRPMD--AEHFRRISGYVT-QDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 94 ~I~~~g~~~~--~~~~~~~i~yv~-Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
+|.+||...- .+++-+.+++|+ |...+.-.+.+.|.+....... ..+.++.+++.+.+.+.++|+...+.++.
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy--~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr-- 155 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY--EIPDDEFAERLDFLTEILDLEGFLKWPVR-- 155 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH--hCCHHHHHHHHHHHHHHhcchhhhhhhhh--
Confidence 9999998653 245556788775 5456666666777776544332 23677888999999999999999888885
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.||-|||.|+.||.+|+++|+||||||||-|||..++..+.+.|++..++.+.||+.+||+.+ ++..+||||++|
T Consensus 156 ----~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I 230 (325)
T COG4586 156 ----KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLI 230 (325)
T ss_pred ----hccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEe
Confidence 899999999999999999999999999999999999999999999999999999999999998 599999999999
Q ss_pred cCCeEEEecChhhHHHHHH
Q 046991 251 SNGFVVHNGTLNHLEERLK 269 (612)
Q Consensus 251 ~~G~iv~~G~~~~~~~~f~ 269 (612)
+.|+++|+|+.+++.+.|.
T Consensus 231 ~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 231 DQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred eCCcEeecccHHHHHHHhC
Confidence 9999999999999887765
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=305.75 Aligned_cols=168 Identities=39% Similarity=0.665 Sum_probs=148.2
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+.. .+..+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 l~~~~l~~~~~~----------------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~ 62 (171)
T cd03228 1 IEFKNVSFSYPG----------------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILID 62 (171)
T ss_pred CEEEEEEEEcCC----------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEEC
Confidence 467888887720 113699999999999999999999999999999999999976 78999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
|+++.. ..+++.++|++|++.+++ .|++||+
T Consensus 63 g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------- 96 (171)
T cd03228 63 GVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI--------------------------------------------- 96 (171)
T ss_pred CEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------
Confidence 988642 345678999999998776 5888886
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++. +.. ||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 79999999999999999999999999999999999999999999985 3 6899999999984 666 99999999885
No 311
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.7e-39 Score=360.29 Aligned_cols=188 Identities=30% Similarity=0.511 Sum_probs=161.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|++|+|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|+.+| .+|+|.
T Consensus 333 ~~I~~~~vsf~Y~-----------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~ 393 (529)
T TIGR02868 333 PTLELRDLSFGYP-----------------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVT 393 (529)
T ss_pred ceEEEEEEEEecC-----------------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEE
Confidence 3699999999983 224599999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC--hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccc
Q 046991 97 VNDRPMD--AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRI 167 (612)
Q Consensus 97 ~~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v 167 (612)
+||++++ .+.+|+.++||+|++.+|+. |++||+.++. +.. .+++++++++..++.+ -.||.+
T Consensus 394 i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~~----~~e~i~~al~~a~l~~~i~~lp~GldT~i 464 (529)
T TIGR02868 394 LDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----PDA----TDEELWAALERVGLADWLRSLPDGLDTVL 464 (529)
T ss_pred ECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----CCC----CHHHHHHHHHHcCCHHHHHhCcccccchh
Confidence 9998865 46788899999999999987 9999998752 111 2345677777777754 357888
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
|+ ....||||||||++|||||+++|++++||||||+||+.+...+.+.|+++. .++|+|+++|++
T Consensus 465 ge--~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 465 GE--GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cc--ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 63 335799999999999999999999999999999999999999999999863 478999999985
No 312
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-38 Score=315.73 Aligned_cols=190 Identities=24% Similarity=0.424 Sum_probs=152.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhhcccEEEEecCCCc
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHFRRISGYVTQDDAL 120 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l 120 (612)
++.+++|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 35799999999999999999999999999999999999976 69999999987632 1235679999999988
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCCccChHHHHHHHHHHHHhhC
Q 046991 121 FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASS-------RIGGGSSNCGISGGERRRASIGVDLVHD 193 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~~LSgGerqRv~ia~~L~~~ 193 (612)
+ ..|++||+.+.... .. ++..++++.+++.+..+. .. +..+..||||||||++||++|+.+
T Consensus 91 ~-~~t~~~nl~~~~~~-----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 91 L-NATVEENITFGSPF-----NK----QRYKAVTDACSLQPDIDLLPFGDQTEI--GERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred c-cccHHHHHhhcCcC-----CH----HHHHHHHHHhCcHHHHHhCcCccccCc--ccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7 46999999764211 11 223455666666543221 11 122348999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 194 PAVVLIDEPTSGLDSASALHVVT--LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 194 p~lllLDEPtsgLD~~~~~~i~~--~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
|+++||||||+|||+.++..+++ +++.+. +.|+|+|++||+++. + ..+|++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999998 666664 458999999999974 5 5799999999884
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.6e-38 Score=299.96 Aligned_cols=158 Identities=31% Similarity=0.507 Sum_probs=142.8
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.+ +++++++++|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~ 60 (163)
T cd03216 1 LELRGITKRF------------------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVD 60 (163)
T ss_pred CEEEEEEEEE------------------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEC
Confidence 4688999888 335699999999999999999999999999999999999977 79999999
Q ss_pred CeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 99 DRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 99 g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|+++.. +..++.++|++|
T Consensus 61 g~~~~~~~~~~~~~~~i~~~~q---------------------------------------------------------- 82 (163)
T cd03216 61 GKEVSFASPRDARRAGIAMVYQ---------------------------------------------------------- 82 (163)
T ss_pred CEECCcCCHHHHHhcCeEEEEe----------------------------------------------------------
Confidence 998743 234567889888
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|++. ++.+.+|++++|++|+
T Consensus 83 -LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 83 -LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLD-EVFEIADRVTVLRDGR 159 (163)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999975 4889999999997 4888999999999999
Q ss_pred EEE
Q 046991 255 VVH 257 (612)
Q Consensus 255 iv~ 257 (612)
+++
T Consensus 160 i~~ 162 (163)
T cd03216 160 VVG 162 (163)
T ss_pred EEe
Confidence 875
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=354.30 Aligned_cols=209 Identities=23% Similarity=0.372 Sum_probs=176.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|+++++ +++++|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.+
T Consensus 1 ml~i~~ls~~~------------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~ 60 (530)
T PRK15064 1 MLSTANITMQF------------------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSL 60 (530)
T ss_pred CEEEEEEEEEe------------------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEe
Confidence 47899999988 346799999999999999999999999999999999999976 7899999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHH-c-----------cCCCC--C----------------HHHHH
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSAL-L-----------RLTAG--R----------------RKQAA 147 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l-----------~~~~~--~----------------~~~~~ 147 (612)
+|. +.++|++|++.+++.+||+|++.++.. . ..+.. . ..+.+
T Consensus 61 ~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (530)
T PRK15064 61 DPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAE 132 (530)
T ss_pred cCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHH
Confidence 873 358999999999999999999986421 0 00000 0 01224
Q ss_pred HHHHHHHHHcCCcccc-cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 046991 148 SRVRGLLKELGLDHVA-SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQG 226 (612)
Q Consensus 148 ~~v~~~l~~lgL~~~~-~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g 226 (612)
++++++++.+||.+.. +..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|
T Consensus 133 ~~~~~~l~~~gl~~~~~~~~~~------~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~ 202 (530)
T PRK15064 133 ARAGELLLGVGIPEEQHYGLMS------EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RN 202 (530)
T ss_pred HHHHHHHHhCCCChhHhcCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CC
Confidence 5788999999997643 45565 8999999999999999999999999999999999999999999863 37
Q ss_pred cEEEEEccCCchHHHhccCeEEEEcCCeE-EEecChhhHH
Q 046991 227 KTIILTIHQPGFRILELFDRLVLLSNGFV-VHNGTLNHLE 265 (612)
Q Consensus 227 ~tii~~~H~~~~~i~~~~D~v~lL~~G~i-v~~G~~~~~~ 265 (612)
.|||++|||++ .+.++||++++|++|++ ++.|++++..
T Consensus 203 ~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 203 STMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 89999999998 48899999999999999 4889887654
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.1e-38 Score=354.76 Aligned_cols=208 Identities=26% Similarity=0.339 Sum_probs=176.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccC-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKD-PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.+|+++||++++ + ++.+|+|+||++++||+++|+|||||||||||++|+|+++| .+|+|
T Consensus 5 ~~l~i~~l~~~y------------------~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i 64 (556)
T PRK11819 5 YIYTMNRVSKVV------------------PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEA 64 (556)
T ss_pred EEEEEeeEEEEe------------------CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceE
Confidence 479999999988 3 46799999999999999999999999999999999999977 79999
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHH-cc------------CCCCCH-------------------
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSAL-LR------------LTAGRR------------------- 143 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~------------~~~~~~------------------- 143 (612)
.+++. ..+|||+|++.+++.+||.||+.++.. .. ......
T Consensus 65 ~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (556)
T PRK11819 65 RPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAA 136 (556)
T ss_pred EecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhc
Confidence 98752 459999999999999999999987521 00 000000
Q ss_pred --HHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046991 144 --KQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSM 221 (612)
Q Consensus 144 --~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l 221 (612)
.+..++++++++.+|+.. .+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 137 ~~~~~~~~~~~~l~~~gl~~-~~~~~~------~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~ 209 (556)
T PRK11819 137 DAWDLDSQLEIAMDALRCPP-WDAKVT------KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY 209 (556)
T ss_pred CccchHHHHHHHHHhCCCCc-ccCchh------hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC
Confidence 012456888999999964 677776 89999999999999999999999999999999999999999999986
Q ss_pred HHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE-EecChhhH
Q 046991 222 VVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV-HNGTLNHL 264 (612)
Q Consensus 222 ~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 264 (612)
. .|||++|||++ .+.+.||++++|++|+++ +.|+.++.
T Consensus 210 ~----~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 210 P----GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred C----CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 2 49999999998 488999999999999986 78887754
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-38 Score=390.41 Aligned_cols=215 Identities=18% Similarity=0.292 Sum_probs=184.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++|++++|+ .+.+++|+|+|++|++||.+||+|+||||||||+++|.|+++| .+|+|.
T Consensus 1233 g~I~f~nVsf~Y~----------------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~ 1294 (1495)
T PLN03232 1233 GSIKFEDVHLRYR----------------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIM 1294 (1495)
T ss_pred CcEEEEEEEEEEC----------------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEE
Confidence 3699999999993 1235799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------ccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ 166 (612)
+||.++. .+.+|++++|||||+.+|+. |++|||.+.. ..+ ++++.++++..++.+ -.|+.
T Consensus 1295 IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~-----~~s----deei~~al~~a~l~~~I~~lp~GLdt~ 1364 (1495)
T PLN03232 1295 IDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS-----EHN----DADLWEALERAHIKDVIDRNPFGLDAE 1364 (1495)
T ss_pred ECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC-----CCC----HHHHHHHHHHcCCHHHHHhCcCCCCce
Confidence 9999874 36789999999999999987 9999997531 112 245667777777654 34677
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++ ....||+
T Consensus 1365 v~--e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~Dr 1438 (1495)
T PLN03232 1365 VS--EGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLN--TIIDCDK 1438 (1495)
T ss_pred ec--CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH--HHHhCCE
Confidence 75 3345799999999999999999999999999999999999999999999864 4799999999996 3456999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
|++|++|++++.|+++++.
T Consensus 1439 IlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1439 ILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999875
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.3e-38 Score=318.17 Aligned_cols=189 Identities=25% Similarity=0.304 Sum_probs=158.9
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCC
Q 046991 51 ILKDVSCEAR-----PGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 51 iL~~vs~~i~-----~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 125 (612)
.++|++++++ +||+++|+||||||||||+++|+|+.+| .+|+|.++|+ .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5666666665 7999999999999999999999999977 7899999985 5899999988777889
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSG 205 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 205 (612)
|+|++.+...... . ....++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~---~---~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY---T---HPYFKTEIAKPLQIEQILDREVP------ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc---c---cHHHHHHHHHHcCCHHHhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 1 12346789999999988888876 8999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE--EecChhh
Q 046991 206 LDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV--HNGTLNH 263 (612)
Q Consensus 206 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv--~~G~~~~ 263 (612)
||+.++..+.+.|++++++.|+|||++||+++ .+..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999999998766899999999997 488899999999764333 3344444
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4e-38 Score=354.53 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=173.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++|++|+|+ +++++|+|+|+++++||.+||+||||||||||+++|+|+++| .+|+|.
T Consensus 321 ~~i~~~~v~f~y~-----------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~ 381 (547)
T PRK10522 321 QTLELRNVTFAYQ-----------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEIL 381 (547)
T ss_pred ceEEEEEEEEEeC-----------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEE
Confidence 3699999999983 234699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+||+++. .+.+++.++||+|++.+|+. |++|| . + +..++.++++++.+++.+..+..-+ ....
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~----~~~~~~~~~~~~~~~l~~~~~~~~~-~~~G 447 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K----PANPALVEKWLERLKMAHKLELEDG-RISN 447 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c-----C----chHHHHHHHHHHHcCCchhhhcccc-CCCC
Confidence 9999875 35678899999999998886 78776 1 0 1223467888999998765432111 0013
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|.+..++.++|+|+++|+++ ..+.+|++++|++|
T Consensus 448 ~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G 525 (547)
T PRK10522 448 LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNG 525 (547)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECC
Confidence 5899999999999999999999999999999999999999999998765445899999999985 56789999999999
Q ss_pred eEEEe
Q 046991 254 FVVHN 258 (612)
Q Consensus 254 ~iv~~ 258 (612)
+++..
T Consensus 526 ~i~e~ 530 (547)
T PRK10522 526 QLSEL 530 (547)
T ss_pred EEEEe
Confidence 99876
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-38 Score=389.32 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=185.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++|++++|+ .+.+++|+|+|++|++||.+||+|+||||||||+++|.|+++| .+|+|.
T Consensus 1236 g~I~f~nVsf~Y~----------------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~ 1297 (1622)
T PLN03130 1236 GSIKFEDVVLRYR----------------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRIL 1297 (1622)
T ss_pred CcEEEEEEEEEeC----------------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEE
Confidence 4699999999993 1234699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-------HVASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ 166 (612)
+||.++. .+.+|+++++||||+.+|+. |++|||.++. . ..++++.++++..++. +-.|+.
T Consensus 1298 IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~-----~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~ 1367 (1622)
T PLN03130 1298 IDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN-----E----HNDADLWESLERAHLKDVIRRNSLGLDAE 1367 (1622)
T ss_pred ECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC-----C----CCHHHHHHHHHHcCcHHHHHhCccccCcc
Confidence 9999875 36789999999999999987 9999997531 1 1234566777777664 345777
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++. + ..|||
T Consensus 1368 Vge--~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t-I-~~~Dr 1441 (1622)
T PLN03130 1368 VSE--AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-I-IDCDR 1441 (1622)
T ss_pred ccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH-H-HhCCE
Confidence 753 345799999999999999999999999999999999999999999999874 47999999999973 4 56999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++|++|++++.|+++++.+
T Consensus 1442 IlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1442 ILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998753
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.7e-38 Score=356.36 Aligned_cols=200 Identities=34% Similarity=0.555 Sum_probs=170.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++|+|+. +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 320 ~i~~~~v~f~y~~----------------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~ 381 (529)
T TIGR02857 320 SLEFSGLSVAYPG----------------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAV 381 (529)
T ss_pred eEEEEEEEEECCC----------------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 6999999999841 234699999999999999999999999999999999999987 7899999
Q ss_pred CCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------ccccc
Q 046991 98 NDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSRI 167 (612)
Q Consensus 98 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v 167 (612)
||+++. .+.+++.++||+|++.+|+. |++||+.++. +..+ ++++.++++..++.+. .||.+
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLAR----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccC----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 999864 36788999999999999985 9999998752 1112 2456677777777543 46677
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
| +....||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. .++|+|+++|+++ ..+.||++
T Consensus 453 ~--e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i 526 (529)
T TIGR02857 453 G--EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRI 526 (529)
T ss_pred c--cccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEE
Confidence 5 3445899999999999999999999999999999999999999999999874 4799999999996 45789999
Q ss_pred EEE
Q 046991 248 VLL 250 (612)
Q Consensus 248 ~lL 250 (612)
++|
T Consensus 527 ~~l 529 (529)
T TIGR02857 527 VVL 529 (529)
T ss_pred EeC
Confidence 875
No 321
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-38 Score=349.86 Aligned_cols=216 Identities=24% Similarity=0.404 Sum_probs=178.7
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 249 ~~i~~~~l~~~~--------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 306 (491)
T PRK10982 249 VILEVRNLTSLR--------------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTIT 306 (491)
T ss_pred cEEEEeCccccc--------------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEE
Confidence 468888887532 3489999999999999999999999999999999999976 799999
Q ss_pred ECCeeCCh----hhhcccEEEEecCC---CcCCCCCHHHHHHHHH---HccCCC-CCHHHHHHHHHHHHHHcCCc-cccc
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDD---ALFPLLTVEETLMCSA---LLRLTA-GRRKQAASRVRGLLKELGLD-HVAS 164 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~---~l~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~ 164 (612)
++|+++.. +..++.++|++|++ .+++.+|+.+|..+.. ...... ...++.+++++++++.+++. +..+
T Consensus 307 ~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 386 (491)
T PRK10982 307 LHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHR 386 (491)
T ss_pred ECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcc
Confidence 99988742 22456799999985 4688888887743221 011101 12234456788999999995 4568
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++|
T Consensus 387 ~~~~------~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~-~~~~~~ 458 (491)
T PRK10982 387 TQIG------SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMP-ELLGIT 458 (491)
T ss_pred cccc------cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChH-HHHhhC
Confidence 8776 8999999999999999999999999999999999999999999999975 4899999999998 588999
Q ss_pred CeEEEEcCCeEEEecChh
Q 046991 245 DRLVLLSNGFVVHNGTLN 262 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~ 262 (612)
|++++|++|+++..++.+
T Consensus 459 d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 459 DRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999877654
No 322
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.5e-38 Score=312.19 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=162.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE-ECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL-VNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~-~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|. ++|.... +.+++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDALP----------LGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCceec----------cccccccCCcCcHHH
Confidence 379999999999999999999999999999999999976 799997 7775431 234567889999999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
|+.+..... ....++. .+.+.+.++|++..++.++ .||||||||++||++|+.+|++++|||||+++|+
T Consensus 69 nl~~~~~~~--~~~~~~~---~~~~~~~~~l~~~~~~~~~------~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLY--GLDGDEF---SHFCYQLTQLEQCYTDRVS------EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHc--CCCHHHH---HHHHHHHhChhHHhhchHh------hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 999876532 1122222 2334566788888888886 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHh
Q 046991 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS 270 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 270 (612)
.++..+.+.+.+..+ ++|+|++||+++ ++.++||++++|++|++++.|+.++..+++..
T Consensus 138 ~~~~~~~~~l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999999998866443 468999999998 48889999999999999999999988766543
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-38 Score=351.77 Aligned_cols=203 Identities=29% Similarity=0.369 Sum_probs=175.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 318 ~~l~~~~l~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~ 377 (530)
T PRK15064 318 NALEVENLTKGF------------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVK 377 (530)
T ss_pred ceEEEEeeEEee------------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEE
Confidence 479999999988 345699999999999999999999999999999999999976 789999
Q ss_pred ECCeeCChhhhcccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGSSN 173 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 173 (612)
++|+ +.+||++|++. +++.+||+|++.+.. .. ...+++++++++.+|+. +..++.++
T Consensus 378 ~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~----~~~~~~~~~~l~~~~l~~~~~~~~~~----- 437 (530)
T PRK15064 378 WSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE----GDDEQAVRGTLGRLLFSQDDIKKSVK----- 437 (530)
T ss_pred ECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc---cC----CccHHHHHHHHHHcCCChhHhcCccc-----
Confidence 9873 46999999864 567799999986421 11 11235688999999994 67788876
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|
T Consensus 438 -~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g 511 (530)
T PRK15064 438 -VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPD 511 (530)
T ss_pred -ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999875 349999999998 588999999999999
Q ss_pred eEE-EecChhhHH
Q 046991 254 FVV-HNGTLNHLE 265 (612)
Q Consensus 254 ~iv-~~G~~~~~~ 265 (612)
+++ +.|+++++.
T Consensus 512 ~i~~~~g~~~~~~ 524 (530)
T PRK15064 512 GVVDFSGTYEEYL 524 (530)
T ss_pred eEEEcCCCHHHHH
Confidence 998 888887653
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=320.02 Aligned_cols=231 Identities=27% Similarity=0.431 Sum_probs=200.0
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---ce
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR---KV 91 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~---~~ 91 (612)
+...|+++||++.+. ...+...++++|||++++||.+||+|+||||||-..+.+.|+++.. ..
T Consensus 3 ~~~lL~v~nLsV~f~--------------~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~ 68 (534)
T COG4172 3 TMPLLSIRNLSVAFH--------------QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHP 68 (534)
T ss_pred CCcceeeeccEEEEe--------------cCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCc
Confidence 456789999999884 2236678999999999999999999999999999999999999753 46
Q ss_pred eeEEEECCeeC---Chhhhc----ccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc
Q 046991 92 SGKLLVNDRPM---DAEHFR----RISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 92 ~G~I~~~g~~~---~~~~~~----~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~ 162 (612)
+|+|.++|+++ +.++++ .+|++++|+| .+.|-.|+.+.+.-..++.. +.++++.++++.++|+.+|+.+-
T Consensus 69 sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr-g~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 69 SGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR-GLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred cceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHcCCCch
Confidence 89999999986 223333 4799999998 57888899888876655432 23677888999999999999876
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
..+. +.++++|||||||||.||+||+++|++|+.||||++||..-+.+|+++|+++.++.|..++++|||.+. +.+
T Consensus 148 ~~rl---~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~ 223 (534)
T COG4172 148 EKRL---DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRK 223 (534)
T ss_pred hhhh---hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHH
Confidence 5443 567889999999999999999999999999999999999999999999999999999999999999985 889
Q ss_pred ccCeEEEEcCCeEEEecChhhH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
++|||.+|.+|++++.|+.+++
T Consensus 224 ~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 224 FADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred hhhhEEEEeccEEeecCcHHHH
Confidence 9999999999999999998875
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=6.6e-38 Score=353.13 Aligned_cols=212 Identities=23% Similarity=0.356 Sum_probs=176.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++|++++|+.+ +..++++|+|+|+++++||.++|+||||||||||+++|+|+.+| .+|+|.
T Consensus 336 ~~i~~~~v~f~y~~~-------------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~ 400 (555)
T TIGR01194 336 DSIELKDVHMNPKAP-------------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEIL 400 (555)
T ss_pred ceEEEEEEEEEeCCC-------------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 469999999999411 00124699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 97 VNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 97 ~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
+||.++.. ..+++.++||+|++.+|+. |++||.. ++..+++++++++.+++.+..+...+|-...
T Consensus 401 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred ECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-----------cchhHHHHHHHHHHcCCchhhcccccccCCc
Confidence 99998753 5678899999999998876 7888741 1123456788999999987766555422233
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLK-SMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~-~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
..||||||||++|||+|+.+|++++|||||++||+.+...+.+.+. .+. ..|+|+|+++|+++ ..+.||++++|++
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~~--~~~~~d~i~~l~~ 545 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDDQ--YFELADQIIKLAA 545 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 5799999999999999999999999999999999999999998664 443 45899999999986 4679999999999
Q ss_pred CeEEEe
Q 046991 253 GFVVHN 258 (612)
Q Consensus 253 G~iv~~ 258 (612)
|+++..
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 999754
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-37 Score=350.52 Aligned_cols=210 Identities=25% Similarity=0.318 Sum_probs=174.9
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+++++||++++. +++++|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.
T Consensus 3 ~~i~~~nls~~~~-----------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~ 63 (552)
T TIGR03719 3 YIYTMNRVSKVVP-----------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEAR 63 (552)
T ss_pred EEEEEeeEEEecC-----------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEE
Confidence 4789999999881 146799999999999999999999999999999999999977 789999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHc-c------------CCCCCHH-------------------
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALL-R------------LTAGRRK------------------- 144 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~------------~~~~~~~------------------- 144 (612)
+++ +..+|||+|++.+++.+||+||+.++... + ......+
T Consensus 64 ~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (552)
T TIGR03719 64 PAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAAD 135 (552)
T ss_pred ecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcC
Confidence 875 24699999999999999999999875311 0 0000010
Q ss_pred --HHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046991 145 --QAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMV 222 (612)
Q Consensus 145 --~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 222 (612)
+...+++++++.+|+.. .++.++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 136 ~~~~~~~~~~~l~~~~l~~-~~~~~~------~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~- 207 (552)
T TIGR03719 136 AWDLDRKLEIAMDALRCPP-WDADVT------KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY- 207 (552)
T ss_pred cchhHHHHHHHHhhCCCCc-ccCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-
Confidence 01245677888888854 567765 89999999999999999999999999999999999999999999875
Q ss_pred HcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE-EecChhhHH
Q 046991 223 VNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV-HNGTLNHLE 265 (612)
Q Consensus 223 ~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~ 265 (612)
+.|||++||+++ .+..+||++++|++|+++ +.|+.++..
T Consensus 208 ---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 208 ---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred ---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 249999999998 488999999999999976 778887653
No 327
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-37 Score=297.62 Aligned_cols=163 Identities=36% Similarity=0.507 Sum_probs=143.3
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 i~~~~~~~~~~-----------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~ 61 (166)
T cd03223 1 IELENLSLATP-----------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMP 61 (166)
T ss_pred CEEEEEEEEcC-----------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEC
Confidence 46888988772 235699999999999999999999999999999999999976 79999998
Q ss_pred CeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh
Q 046991 99 DRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG 178 (612)
Q Consensus 99 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg 178 (612)
|. +.++|++|++.++ ..|++||+.+. .+. +|||
T Consensus 62 ~~--------~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~------~LS~ 94 (166)
T cd03223 62 EG--------EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------WDD------VLSG 94 (166)
T ss_pred CC--------ceEEEECCCCccc-cccHHHHhhcc--------------------------------CCC------CCCH
Confidence 73 5699999998765 56999998642 122 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 179 GERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 179 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|++|
T Consensus 95 G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999875 479999999986 35799999999875
No 328
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4e-37 Score=317.27 Aligned_cols=203 Identities=24% Similarity=0.380 Sum_probs=163.8
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+
T Consensus 36 ~~~~l~i~nls~~--------------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~ 93 (282)
T cd03291 36 DDNNLFFSNLCLV--------------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGK 93 (282)
T ss_pred CCCeEEEEEEEEe--------------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcE
Confidence 4456899999863 14599999999999999999999999999999999999977 6899
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc-------ccc
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS-------SRI 167 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v 167 (612)
|.++| .++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+..+ +.+
T Consensus 94 I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~-----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~ 153 (282)
T cd03291 94 IKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSY-----DE----YRYKSVVKACQLEEDITKFPEKDNTVL 153 (282)
T ss_pred EEECC----------EEEEEeCccccccc-CHHHHhhccccc-----CH----HHHHHHHHHhCCHHHHHhcccccccee
Confidence 99988 38999999988875 999999864211 11 12234444455543222 222
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLL-KSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+.....||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ ++++ + +.|||++||+++. + ..||+
T Consensus 154 --~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~-~-~~~d~ 227 (282)
T cd03291 154 --GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEH-L-KKADK 227 (282)
T ss_pred --cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHH-H-HhCCE
Confidence 1223589999999999999999999999999999999999999999865 5553 3 6899999999974 5 68999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|++++.|+++++.
T Consensus 228 i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 329
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-37 Score=308.79 Aligned_cols=195 Identities=27% Similarity=0.381 Sum_probs=170.0
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..++++||++.++.+.. ..+ .....+++||||++++||+++|+|+||||||||-|+|.|+.+| ++|+|+
T Consensus 3 ~ll~v~~l~k~f~~~~~--------~~~-~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~ 71 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG--------FGK-KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEIL 71 (268)
T ss_pred ceEEEeccEEEEecccc--------cCc-ccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEE
Confidence 46899999999964321 001 1135799999999999999999999999999999999999987 899999
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCc
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCG 175 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~ 175 (612)
++|+++.... +++..+++.++|+.+|+.+ .+++.+ ++
T Consensus 72 f~g~~i~~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP------he 109 (268)
T COG4608 72 FEGKDITKLS------------------------------------KEERRERVLELLEKVGLPEEFLYRYP------HE 109 (268)
T ss_pred EcCcchhhcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC------cc
Confidence 9999864211 2355678999999999875 455555 49
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
+|||||||+.|||||+.+|+++++|||+|.||...+.+++++|+++.++.|.|.++++||.+. +..++||+.+|..|++
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~i 188 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKI 188 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCce
Confidence 999999999999999999999999999999999999999999999999899999999999985 8999999999999999
Q ss_pred EEecChhhHH
Q 046991 256 VHNGTLNHLE 265 (612)
Q Consensus 256 v~~G~~~~~~ 265 (612)
++.|+.+++.
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 9999998864
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-37 Score=382.89 Aligned_cols=217 Identities=19% Similarity=0.279 Sum_probs=185.6
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.-.|+++|++++|+. +.+++|+|||++|++||.+||+|+||||||||+++|.|++++ .+|+|
T Consensus 1282 ~g~I~f~nVsf~Y~~----------------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I 1343 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRE----------------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEI 1343 (1522)
T ss_pred CCcEEEEEEEEEeCC----------------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeE
Confidence 347999999999931 224699999999999999999999999999999999999987 78999
Q ss_pred EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 046991 96 LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASS 165 (612)
Q Consensus 96 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~ 165 (612)
.+||.++. .+.+|+++++||||+.+|+. |++|||.... ..+ ++++.++++..++.+ -.|+
T Consensus 1344 ~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~-----~~s----deei~~al~~a~l~~~I~~lp~GLdt 1413 (1522)
T TIGR00957 1344 IIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS-----QYS----DEEVWWALELAHLKTFVSALPDKLDH 1413 (1522)
T ss_pred EECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc-----CCC----HHHHHHHHHHcCcHHHHhhCccCCCc
Confidence 99999875 36789999999999999997 9999996211 112 234667777777753 3577
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+| +....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++ ....+|
T Consensus 1414 ~v~--e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~--ti~~~D 1487 (1522)
T TIGR00957 1414 ECA--EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLN--TIMDYT 1487 (1522)
T ss_pred eec--CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCC
Confidence 775 2335799999999999999999999999999999999999999999999864 4799999999996 456789
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~~ 266 (612)
||++|++|++++.|+++++.+
T Consensus 1488 rIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1488 RVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998754
No 331
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.8e-37 Score=381.52 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=185.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+|+||+++|+. +.+.+|+||||+|++||.+||+|+||||||||+++|.|++++ .+|+|+
T Consensus 1307 G~I~f~nVsf~Y~~----------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~ 1368 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE----------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIR 1368 (1560)
T ss_pred CeEEEEEEEEEeCC----------------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 36999999999931 234699999999999999999999999999999999999987 789999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------cccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ 166 (612)
+||.++. .+.+|+.++||||++.+|+. |++|||.... ..+ ++++.++++..|+.+. .|+.
T Consensus 1369 IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~-----~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~ 1438 (1560)
T PTZ00243 1369 VNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL-----EAS----SAEVWAALELVGLRERVASESEGIDSR 1438 (1560)
T ss_pred ECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc-----CCC----HHHHHHHHHHCCChHHHhhCccccccc
Confidence 9999875 36789999999999999987 9999996321 112 3567788888887643 5777
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHD-PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~-p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++ ....||
T Consensus 1439 vge--~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~D 1512 (1560)
T PTZ00243 1439 VLE--GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYD 1512 (1560)
T ss_pred ccC--CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCC
Confidence 753 3357999999999999999995 89999999999999999999999999863 4789999999996 467899
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++|++++.|+++++.
T Consensus 1513 rIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1513 KIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999999875
No 332
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-38 Score=326.57 Aligned_cols=230 Identities=25% Similarity=0.422 Sum_probs=194.5
Q ss_pred CCCCCCCC-CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 7 APVSGSRK-ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 7 ~~~~~~~~-~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
.|++..-. ++-.++|+|+++.|. .+|++|+||||++.||+.+|++||||+||||++|+|-.+
T Consensus 525 ~P~a~pl~~~~G~i~fsnvtF~Y~-----------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 525 LPGAPPLKVTQGKIEFSNVTFAYD-----------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred CCCCCCccccCCeEEEEEeEEecC-----------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 35554332 566899999999993 678999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHH--HHH-HHHcCC
Q 046991 86 ISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRV--RGL-LKELGL 159 (612)
Q Consensus 86 ~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v--~~~-l~~lgL 159 (612)
.+. .+|.|.+||+++.. ..+|+.||.||||..+|++ |+..|++|+. +..++++..+.+ .++ -+.++.
T Consensus 588 fdv--~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~AsneevyaAAkAA~IHdrIl~f 660 (790)
T KOG0056|consen 588 FDV--NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PSASNEEVYAAAKAAQIHDRILQF 660 (790)
T ss_pred hhc--cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----CCCChHHHHHHHHHhhHHHHHhcC
Confidence 876 69999999999853 5689999999999999987 9999998852 233444433322 222 234788
Q ss_pred cccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH
Q 046991 160 DHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239 (612)
Q Consensus 160 ~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 239 (612)
.+..+|+||+ ..-.|||||||||+|||+++.+|.+++|||.||+||..+..+|...|.+++. ++|-|++.|..+.
T Consensus 661 PegY~t~VGE--RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLST- 735 (790)
T KOG0056|consen 661 PEGYNTRVGE--RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLST- 735 (790)
T ss_pred chhhhhhhhh--cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehh-
Confidence 8899999974 3337999999999999999999999999999999999999999999999984 7899999999973
Q ss_pred HHhccCeEEEEcCCeEEEecChhhHHH
Q 046991 240 ILELFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 240 i~~~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
.-.+|.|+++++|+|++.|..+|+..
T Consensus 736 -ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 736 -IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -eecccEEEEEeCCeEeecCcHHHHHh
Confidence 45789999999999999999988754
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-37 Score=379.90 Aligned_cols=214 Identities=24% Similarity=0.423 Sum_probs=175.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++.|+. ..++++|+|+|+++++||++||+||||||||||+++|+|+++| .+|+|++
T Consensus 382 ~I~~~nVsf~Y~~---------------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i 444 (1466)
T PTZ00265 382 KIQFKNVRFHYDT---------------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIII 444 (1466)
T ss_pred cEEEEEEEEEcCC---------------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEE
Confidence 6999999999941 1235699999999999999999999999999999999999987 7999999
Q ss_pred C-CeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHc-c--------CCC------------------------
Q 046991 98 N-DRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALL-R--------LTA------------------------ 140 (612)
Q Consensus 98 ~-g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~--------~~~------------------------ 140 (612)
| |.++. .+.+|+.+|||+|++.+|+. |++||+.++... + ...
T Consensus 445 ~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 445 NDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred eCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 4 67653 35678899999999999985 999999986310 0 000
Q ss_pred ----------------CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEE
Q 046991 141 ----------------GRRKQAASRVRGLLKELGLDHV-------ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVV 197 (612)
Q Consensus 141 ----------------~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ll 197 (612)
......++++.++++.+++.+. .||.+| +....||||||||++|||||+.+|++|
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg--~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG--SNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC--CCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 0001123567788888877644 466664 345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 198 LIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 198 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
|||||||+||+.++..+.+.|++++++.|+|+|+++|+++. + +.||+|++|++|
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 99999999999999999999999875458999999999973 4 789999999986
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.7e-37 Score=346.11 Aligned_cols=200 Identities=27% Similarity=0.307 Sum_probs=174.3
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.+ ++. .|+++|+++++||+++|+||||||||||+++|+|+.+| .+|+|
T Consensus 338 ~~~l~~~~ls~~~------------------~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I 396 (590)
T PRK13409 338 ETLVEYPDLTKKL------------------GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEV 396 (590)
T ss_pred ceEEEEcceEEEE------------------CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 4579999999877 222 48999999999999999999999999999999999977 78999
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
.++ ..++|++|+..+.+.+||+|++.+.... . .. ...++++++.+||.+..++.++ .
T Consensus 397 ~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-~---~~---~~~~~~~L~~l~l~~~~~~~~~------~ 453 (590)
T PRK13409 397 DPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-L---GS---SYYKSEIIKPLQLERLLDKNVK------D 453 (590)
T ss_pred EEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-c---Ch---HHHHHHHHHHCCCHHHHhCCcc------c
Confidence 886 1489999998888899999999875311 1 11 2356889999999988888887 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++|||+. .+..++|++++|+ |++
T Consensus 454 LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~ 531 (590)
T PRK13409 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEP 531 (590)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccc
Confidence 99999999999999999999999999999999999999999999998766899999999998 4888999999996 577
Q ss_pred EEecCh
Q 046991 256 VHNGTL 261 (612)
Q Consensus 256 v~~G~~ 261 (612)
...|..
T Consensus 532 ~~~g~~ 537 (590)
T PRK13409 532 GKHGHA 537 (590)
T ss_pred eeeeec
Confidence 777653
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-36 Score=343.47 Aligned_cols=205 Identities=25% Similarity=0.378 Sum_probs=172.4
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|
T Consensus 322 ~~~l~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i 381 (556)
T PRK11819 322 DKVIEAENLSKSF------------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTI 381 (556)
T ss_pred CeEEEEEeEEEEE------------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEE
Confidence 3579999999888 346799999999999999999999999999999999999976 79999
Q ss_pred EECCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 173 (612)
.+++. ..+||++|++ .+++.+||+||+.+...... ...+ ..+++++++.+|+.+ ..++.++
T Consensus 382 ~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~--~~~~--~~~~~~~l~~~~l~~~~~~~~~~----- 444 (556)
T PRK11819 382 KIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK--VGNR--EIPSRAYVGRFNFKGGDQQKKVG----- 444 (556)
T ss_pred EECCc--------eEEEEEeCchhhcCCCCCHHHHHHhhccccc--cccc--HHHHHHHHHhCCCChhHhcCchh-----
Confidence 98542 1499999996 78889999999987643211 1111 223557899999964 5677776
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC-
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN- 252 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~- 252 (612)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++
T Consensus 445 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~-~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 445 -VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRW-FLDRIATHILAFEGD 518 (556)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999862 4 8999999998 48899999999986
Q ss_pred CeEE-EecChhh
Q 046991 253 GFVV-HNGTLNH 263 (612)
Q Consensus 253 G~iv-~~G~~~~ 263 (612)
|++. +.|+.++
T Consensus 519 g~~~~~~g~~~~ 530 (556)
T PRK11819 519 SQVEWFEGNFQE 530 (556)
T ss_pred CeEEEecCCHHH
Confidence 7876 5665543
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.5e-36 Score=341.83 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=171.8
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
..+|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|
T Consensus 320 ~~~l~~~~l~~~~------------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i 379 (552)
T TIGR03719 320 DKVIEAENLSKGF------------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTI 379 (552)
T ss_pred CeEEEEeeEEEEE------------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEE
Confidence 3479999999887 345799999999999999999999999999999999999976 79999
Q ss_pred EECCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 173 (612)
.+++. ..+||++|++ .+++.+||.|++.+..... ..... ..+++++++.+|+.+ ..++.++
T Consensus 380 ~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~~----- 442 (552)
T TIGR03719 380 KIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII--QLGKR--EVPSRAYVGRFNFKGSDQQKKVG----- 442 (552)
T ss_pred EECCc--------eEEEEEeCCccccCCCCcHHHHHHhhcccc--ccCcc--hHHHHHHHHhCCCChhHhcCchh-----
Confidence 98542 1599999996 4788899999998764221 11111 224567899999964 5677776
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC-
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN- 252 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~- 252 (612)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++
T Consensus 443 -~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 443 -QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGD 516 (552)
T ss_pred -hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999872 4 8999999998 48889999999986
Q ss_pred CeEE-EecChhh
Q 046991 253 GFVV-HNGTLNH 263 (612)
Q Consensus 253 G~iv-~~G~~~~ 263 (612)
|++. +.|+.++
T Consensus 517 ~~~~~~~g~~~~ 528 (552)
T TIGR03719 517 SHVEWFEGNYSE 528 (552)
T ss_pred CeEEEeCCCHHH
Confidence 5776 5565543
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.3e-37 Score=374.88 Aligned_cols=215 Identities=20% Similarity=0.319 Sum_probs=185.3
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
.-.|+++||+++|+. +.+++|+|||++|++||.+||+|+||||||||+++|.|+.+ .+|+|
T Consensus 1215 ~g~I~f~nVs~~Y~~----------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I 1275 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTE----------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEI 1275 (1490)
T ss_pred CCeEEEEEEEEEeCC----------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEE
Confidence 346999999999931 34679999999999999999999999999999999999985 48999
Q ss_pred EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 046991 96 LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASS 165 (612)
Q Consensus 96 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~ 165 (612)
++||.+++ .+.+|++++||||++.+|+. |+||||.... +..++++.++++.++|.+ -.|+
T Consensus 1276 ~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~---------~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1276 QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE---------QWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred EECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc---------CCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 99999975 36789999999999999997 9999995321 112356778888888854 3567
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+++ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|||+++|.++ ....||
T Consensus 1346 ~v~e--~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~--ti~~~D 1419 (1490)
T TIGR01271 1346 VLVD--GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE--ALLECQ 1419 (1490)
T ss_pred cccc--CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCC
Confidence 7752 345799999999999999999999999999999999999999999999864 4799999999996 456699
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++|+++..|+++++.
T Consensus 1420 rIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1420 QFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998875
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.8e-37 Score=290.89 Aligned_cols=204 Identities=30% Similarity=0.436 Sum_probs=174.6
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCC--CcC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDD--ALF 121 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~--~l~ 121 (612)
..+++|+++|++|.+||++.|+|.||||||||+|+|+|.+.+ ++|+|.++|.+++. .+....++-|+|+| ..+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 568899999999999999999999999999999999999987 89999999999864 23345678899998 469
Q ss_pred CCCCHHHHHHHHHHccCCC-CC---HHHHHHHHHHHHHH--cCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCC
Q 046991 122 PLLTVEETLMCSALLRLTA-GR---RKQAASRVRGLLKE--LGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA 195 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~-~~---~~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ 195 (612)
+.||++||+..+..-.... .+ ....++...+-++. +||++..++++| -|||||||-+++++|-++.|+
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig------lLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG------LLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh------hccchHHHHHHHHHHhcCCCc
Confidence 9999999999875321111 11 22333344555555 456788899998 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 196 VVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 196 lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
+|+|||-|++|||.++..+++.-.++.++.+.|.+++||.++ ++.++-+|+++|++|+|+.+-
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999888999999999998 589999999999999999763
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-36 Score=309.18 Aligned_cols=190 Identities=27% Similarity=0.391 Sum_probs=160.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE-----------ECCeeCCh--hh-hc--ccEEE
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL-----------VNDRPMDA--EH-FR--RISGY 113 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~-----------~~g~~~~~--~~-~~--~~i~y 113 (612)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+| .+|+|. ++|+++.. .. .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5999999 5999999999999999999999999999977 799996 78877642 11 11 24789
Q ss_pred EecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhC
Q 046991 114 VTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHD 193 (612)
Q Consensus 114 v~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~ 193 (612)
++|+..+++. ++.+++.... . ..+..+++.++++.+|+.+..++.+. .||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--~-----~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--K-----KKDERGKLDELVDQLELRHVLDRNID------QLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--c-----hhHHHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHhC
Confidence 9999888874 8888887642 1 22334678899999999887777775 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 194 PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 194 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
|++++|||||+|||+.++..+.+.|+++++ .++|||+++|+++ .+.++||++++|+ |++.+.|
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999975 4789999999997 4778999999995 6565543
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=342.19 Aligned_cols=205 Identities=25% Similarity=0.400 Sum_probs=174.5
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++||++.| +++.+|+|+|++|++||+++|+||||||||||||+|+|..+| .+|+
T Consensus 309 ~~~~l~~~~l~~~y------------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~ 368 (638)
T PRK10636 309 PNPLLKMEKVSAGY------------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGE 368 (638)
T ss_pred CCceEEEEeeEEEe------------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCe
Confidence 34579999999888 446799999999999999999999999999999999999976 7999
Q ss_pred EEECCeeCChhhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGS 171 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 171 (612)
|.+++. ..+||++|+. .+.+..|+.+++.- .. .....+++.++++.+++. +..+++++
T Consensus 369 i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~--- 429 (638)
T PRK10636 369 IGLAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA-----PQELEQKLRDYLGGFGFQGDKVTEETR--- 429 (638)
T ss_pred EEECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC-----chhhHHHHHHHHHHcCCChhHhcCchh---
Confidence 999742 2589999974 35566788877631 11 122345688999999996 46788887
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|+
T Consensus 430 ---~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~-~~~~~~d~i~~l~ 501 (638)
T PRK10636 430 ---RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH-LLRSTTDDLYLVH 501 (638)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH-HHHHhCCEEEEEE
Confidence 89999999999999999999999999999999999999999999986 25 9999999998 4889999999999
Q ss_pred CCeEE-EecChhhHHH
Q 046991 252 NGFVV-HNGTLNHLEE 266 (612)
Q Consensus 252 ~G~iv-~~G~~~~~~~ 266 (612)
+|+++ +.|+.++..+
T Consensus 502 ~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 502 DGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCHHHHHH
Confidence 99997 8899887643
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-35 Score=339.69 Aligned_cols=206 Identities=26% Similarity=0.398 Sum_probs=173.4
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++||++.+ +++++|+|+|++|++||+++|+|||||||||||++|+|..+| .+|+|
T Consensus 317 ~~~l~~~~l~~~~------------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i 376 (635)
T PRK11147 317 KIVFEMENVNYQI------------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRI 376 (635)
T ss_pred CceEEEeeeEEEE------------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEE
Confidence 4579999999887 446799999999999999999999999999999999999976 79999
Q ss_pred EECCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 173 (612)
.+ |.++ .+||++|+. .+++.+||.|++.+.... .. .. ....++.++++.+++. +..+++++
T Consensus 377 ~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~----- 439 (635)
T PRK11147 377 HC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQE-VM-VN--GRPRHVLGYLQDFLFHPKRAMTPVK----- 439 (635)
T ss_pred EE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhccc-cc-cc--chHHHHHHHHHhcCCCHHHHhChhh-----
Confidence 98 4332 489999985 588999999999875321 10 01 1234678899999996 46788886
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc-C
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS-N 252 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~-~ 252 (612)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+.++||++++|+ +
T Consensus 440 -~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 440 -ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGN 513 (635)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCC
Confidence 89999999999999999999999999999999999999999999875 349999999997 4889999999997 7
Q ss_pred CeEE-EecChhhH
Q 046991 253 GFVV-HNGTLNHL 264 (612)
Q Consensus 253 G~iv-~~G~~~~~ 264 (612)
|++. |.|+.++-
T Consensus 514 g~i~~~~g~y~~y 526 (635)
T PRK11147 514 GKIGRYVGGYHDA 526 (635)
T ss_pred CeEEEccCCHHHH
Confidence 9986 45665553
No 342
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-36 Score=277.17 Aligned_cols=229 Identities=26% Similarity=0.390 Sum_probs=195.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++++..+..-+ +.....+++.|||++++|+.+||+|.||||||||.|+|+|.++| ++|+|++
T Consensus 4 LLeV~nLsKtF~~~~~lf---------~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~ 72 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLF---------RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILI 72 (267)
T ss_pred hhhhhhhhhhhhhhhhhh---------hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC--CCceEEE
Confidence 578999998885432211 12345689999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 046991 98 NDRPMDA---EHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 171 (612)
||+++.- ....+.|-+++||+ .+.|.+.+.+-|....++... ...+++.+++.+.|+.+||-+ .++-.+
T Consensus 73 n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~-~~~~~R~~~i~~TL~~VGL~Pdhan~~~---- 147 (267)
T COG4167 73 NDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD-LEPEQRRKQIFETLRMVGLLPDHANYYP---- 147 (267)
T ss_pred CCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc-CChHHHHHHHHHHHHHhccCccccccch----
Confidence 9999753 23347899999998 477888888888877655332 256677888999999999954 344444
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+.||-||||||++||||+.+|++++.||..++||...+.+++++..++.++.|.+-|.++.+... +..++|+|++|+
T Consensus 148 --~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~ 224 (267)
T COG4167 148 --HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMH 224 (267)
T ss_pred --hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEe
Confidence 48999999999999999999999999999999999999999999999998999999999999985 999999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|.+.++.
T Consensus 225 EG~vvE~G~t~~v~ 238 (267)
T COG4167 225 EGEVVERGSTADVL 238 (267)
T ss_pred cCceeecCChhhhh
Confidence 99999999988764
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.8e-35 Score=335.59 Aligned_cols=208 Identities=20% Similarity=0.350 Sum_probs=170.1
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|+++.|. +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|
T Consensus 506 ~~~L~~~~ls~~y~-----------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I 566 (718)
T PLN03073 506 PPIISFSDASFGYP-----------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTV 566 (718)
T ss_pred CceEEEEeeEEEeC-----------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceE
Confidence 35799999999882 234699999999999999999999999999999999999977 78999
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCC
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNC 174 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 174 (612)
.+++. ..+||++|+. .+.+++.++.........+.. ..++++++++.+|+.+ ..++.++
T Consensus 567 ~~~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~------ 626 (718)
T PLN03073 567 FRSAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMY------ 626 (718)
T ss_pred EECCc--------eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCcc------
Confidence 98752 3599999985 344566666433211111111 1356788999999974 5677776
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++. .| |||++|||+.. +.++||++++|++|+
T Consensus 627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~-i~~~~drv~~l~~G~ 701 (718)
T PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHL-ISGSVDELWVVSEGK 701 (718)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHH-HHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999998888764 34 99999999984 888999999999999
Q ss_pred EE-EecChhhHHHH
Q 046991 255 VV-HNGTLNHLEER 267 (612)
Q Consensus 255 iv-~~G~~~~~~~~ 267 (612)
++ +.|+.++..++
T Consensus 702 i~~~~g~~~~~~~~ 715 (718)
T PLN03073 702 VTPFHGTFHDYKKT 715 (718)
T ss_pred EEEeCCCHHHHHHH
Confidence 98 78887765443
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.6e-35 Score=274.53 Aligned_cols=144 Identities=33% Similarity=0.522 Sum_probs=131.5
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
++++|+++.+ +++.+++++|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++
T Consensus 1 l~~~~l~~~~------------------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~ 60 (144)
T cd03221 1 IELENLSKTY------------------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWG 60 (144)
T ss_pred CEEEEEEEEE------------------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEEC
Confidence 4678888877 334699999999999999999999999999999999999977 79999999
Q ss_pred CeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh
Q 046991 99 DRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG 178 (612)
Q Consensus 99 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg 178 (612)
|+ +.++|++| ||+
T Consensus 61 ~~--------~~i~~~~~-----------------------------------------------------------lS~ 73 (144)
T cd03221 61 ST--------VKIGYFEQ-----------------------------------------------------------LSG 73 (144)
T ss_pred Ce--------EEEEEEcc-----------------------------------------------------------CCH
Confidence 84 46899988 799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 179 GERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 179 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
||+||++||++|+.+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|+++ ++.+++|++++|++|+
T Consensus 74 G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999876 369999999997 5888999999999985
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=334.40 Aligned_cols=206 Identities=24% Similarity=0.388 Sum_probs=166.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||++++ +++.+|+||||+|++||++||+||||||||||||+|+|..+| ++|+|.+
T Consensus 1 ~i~i~nls~~~------------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~ 60 (638)
T PRK10636 1 MIVFSSLQIRR------------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTF 60 (638)
T ss_pred CEEEEEEEEEe------------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEe
Confidence 47899999988 557799999999999999999999999999999999999876 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHH-----------------------Hcc--CCCCCHHHHHHHHHH
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSA-----------------------LLR--LTAGRRKQAASRVRG 152 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-----------------------~l~--~~~~~~~~~~~~v~~ 152 (612)
+|.. .++|++|++.... .|+.+.+.-.. .+. .......+..+++++
T Consensus 61 ~~~~--------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (638)
T PRK10636 61 PGNW--------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAAS 131 (638)
T ss_pred cCCC--------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 8742 3788888643332 45555442110 000 000001123457889
Q ss_pred HHHHcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEE
Q 046991 153 LLKELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIIL 231 (612)
Q Consensus 153 ~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~ 231 (612)
+++.+|+. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+
T Consensus 132 ~L~~lgl~~~~~~~~~~------~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tvii 201 (638)
T PRK10636 132 LLHGLGFSNEQLERPVS------DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLIL 201 (638)
T ss_pred HHHhCCCCchhhcCchh------hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEE
Confidence 99999997 56788887 89999999999999999999999999999999999999999999874 459999
Q ss_pred EccCCchHHHhccCeEEEEcCCeEE-EecChhh
Q 046991 232 TIHQPGFRILELFDRLVLLSNGFVV-HNGTLNH 263 (612)
Q Consensus 232 ~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 263 (612)
+|||... +.++||++++|++|+++ |.|+.+.
T Consensus 202 vsHd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 202 ISHDRDF-LDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred EeCCHHH-HHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999984 88999999999999996 6777654
No 346
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=348.71 Aligned_cols=208 Identities=33% Similarity=0.505 Sum_probs=192.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCCCcCCCCCH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+++++|+.+++||+.|++|+|||||||++|+|+|..++ ++|+++++|.++.. .+.++.+||+||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 99999999999999999999999999999999999987 79999999998753 3478899999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
+|++.+.++++. .++.+.++.++.+++.+||.+.+++.++ .+|||+|||+++|.||+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG--~~~~di~~~v~~ll~~~~L~~~~~~~~~------~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRG--LPRSDIGSAIEKLLRLVGLGPYANKQVR------TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcC--CChhHHHHHHHHHHHHcCChhhhccchh------hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 999999998863 3455667779999999999999999987 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHh
Q 046991 207 DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS 270 (612)
Q Consensus 207 D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 270 (612)
||.+++.+.++++++.+ +|+.||+|||.++ |...+|||+.+|.+|++...|+++++...|.+
T Consensus 730 DP~arr~lW~ii~~~~k-~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRK-NGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 99999999999999975 4669999999998 69999999999999999999999999987764
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=266.46 Aligned_cols=193 Identities=30% Similarity=0.441 Sum_probs=170.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~ 96 (612)
+++++|++... ++...|-++|++|.+||++-||||||||||||+..+.|.+.+. ..+|+++
T Consensus 2 ~l~l~nvsl~l------------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~ 63 (213)
T COG4136 2 MLCLKNVSLRL------------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELW 63 (213)
T ss_pred ceeeeeeeecC------------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEE
Confidence 46788887544 5678999999999999999999999999999999999999765 6799999
Q ss_pred ECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 97 VNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 97 ~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
+|+++++. ...+|++|..+||+.+||.++|.+|+.|+..-.. ..+.+++.++..+++.||....++.+. +
T Consensus 64 l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~---KG~aRr~~a~aAL~~~gL~g~f~~dP~------t 134 (213)
T COG4136 64 LNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL---KGNARRNAANAALERSGLDGAFHQDPA------T 134 (213)
T ss_pred ECCeeccccchhhhheeeeecccccccccccccceEEecCccc---ccHHHHhhHHHHHHHhccchhhhcChh------h
Confidence 99999864 4567899999999999999999999998642222 233556678999999999999888776 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-.-+++.|..+|.+|||..
T Consensus 135 lSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred cCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999999999999999999888777888999999999986
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.6e-35 Score=283.03 Aligned_cols=149 Identities=26% Similarity=0.368 Sum_probs=131.3
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCC
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 124 (612)
+++++.+++++ +++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++ ++|++|+..
T Consensus 9 ~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~---------i~~~~q~~~----- 71 (177)
T cd03222 9 RYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGIT---------PVYKPQYID----- 71 (177)
T ss_pred EECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEE---------EEEEcccCC-----
Confidence 33667789985 89999999999999999999999999999977 79999999863 688887432
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 125 TVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
||||||||++||++|+.+|++++|||||+
T Consensus 72 ---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 72 ---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 79999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEe--cChh
Q 046991 205 GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHN--GTLN 262 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~--G~~~ 262 (612)
|||+.++..+.+.+++++++.++|||++||+++ ++.++||++++|+++-.++. |++.
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999997654589999999997 47889999999998766654 5554
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-35 Score=361.79 Aligned_cols=206 Identities=30% Similarity=0.459 Sum_probs=171.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|++++++. ..++++|+|+|+++++||.++|+||||||||||+++|.|.+++ .+|.+.
T Consensus 614 ~I~~~~vsF~y~~---------------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~- 675 (1495)
T PLN03232 614 AISIKNGYFSWDS---------------KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV- 675 (1495)
T ss_pred cEEEEeeEEEcCC---------------CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE-
Confidence 6999999999831 1235799999999999999999999999999999999999987 577652
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRIGGG 170 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~ 170 (612)
.+++.++||+|++.+++. |++||+.|+.. ..+++.+++++..+|.+ -.+|.+|+
T Consensus 676 --------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~---------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe- 736 (1495)
T PLN03232 676 --------VIRGSVAYVPQVSWIFNA-TVRENILFGSD---------FESERYWRAIDVTALQHDLDLLPGRDLTEIGE- 736 (1495)
T ss_pred --------EecCcEEEEcCccccccc-cHHHHhhcCCc---------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecC-
Confidence 356789999999999986 99999998631 12345666677666644 34577753
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTL-LKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
....||||||||++||||+.++|++++||||||+||+.++.++++. ++... .++|+|++||+++ ..+.+|+|++
T Consensus 737 -~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~ 811 (1495)
T PLN03232 737 -RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIIL 811 (1495)
T ss_pred -CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEE
Confidence 3458999999999999999999999999999999999999988765 55442 4789999999986 4678999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|++++.|+.+++.
T Consensus 812 L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 812 VSEGMIKEEGTFAELS 827 (1495)
T ss_pred EeCCEEEEecCHHHHH
Confidence 9999999999998874
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-34 Score=280.44 Aligned_cols=232 Identities=26% Similarity=0.329 Sum_probs=195.2
Q ss_pred ceEEEeeeEEEEecccccc----cc---eecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 046991 17 CRLETKNLSYKLCSKFDEF----NW---VYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR 89 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~----~~---~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~ 89 (612)
+.++++||++.++...... .. ...+. .+.....+|+||||++++||.+||+|+||||||||||+|+|.++|
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P- 79 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGG-RKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP- 79 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCC-CCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-
Confidence 4688999998886543111 01 11011 134557799999999999999999999999999999999999988
Q ss_pred ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 046991 90 KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG 169 (612)
Q Consensus 90 ~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 169 (612)
++|+|.++|+-...-.+ .-.+.|++|.+||+.+-+.+. +.++++.+++++++++.-+|.+..|.++.
T Consensus 80 -t~G~v~v~G~v~~li~l---------g~Gf~pelTGreNi~l~~~~~--G~~~~ei~~~~~eIieFaELG~fi~~Pvk- 146 (249)
T COG1134 80 -TSGKVKVTGKVAPLIEL---------GAGFDPELTGRENIYLRGLIL--GLTRKEIDEKVDEIIEFAELGDFIDQPVK- 146 (249)
T ss_pred -CCceEEEcceEehhhhc---------ccCCCcccchHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHhhCchh-
Confidence 79999999975422111 123567899999999876542 34688899999999999999999999996
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
.+|.||+-|++.|.+...+|++|++||-.+--|+.-++.-.+.++++.++ ++|||++|||++ .+.++||++++
T Consensus 147 -----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~-~I~~~Cd~~i~ 219 (249)
T COG1134 147 -----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLG-AIKQYCDRAIW 219 (249)
T ss_pred -----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHH-HHHHhcCeeEE
Confidence 89999999999999999999999999999999999999999999999654 689999999998 49999999999
Q ss_pred EcCCeEEEecChhhHHHHHHh
Q 046991 250 LSNGFVVHNGTLNHLEERLKS 270 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~~~f~~ 270 (612)
|++|++.+.|+++++.+++.+
T Consensus 220 l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 220 LEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EeCCEEEEcCCHHHHHHHHHH
Confidence 999999999999998877654
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.5e-35 Score=336.23 Aligned_cols=200 Identities=21% Similarity=0.297 Sum_probs=163.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|+++.++ +++.+|+|+|+++++||.++|+||||||||||+++|+|+.++ .+|+|.+
T Consensus 451 ~i~~~nv~~~~~-----------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~ 511 (659)
T TIGR00954 451 GIKFENIPLVTP-----------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTK 511 (659)
T ss_pred eEEEEeeEEECC-----------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEee
Confidence 599999999772 234699999999999999999999999999999999999876 6899987
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC---CCCCC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG---GSSNC 174 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~ 174 (612)
++ ++.++||+|++.+++. |++||+.++....... ..+..+++++++++.+|+.+..++..|- .+...
T Consensus 512 ~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~ 581 (659)
T TIGR00954 512 PA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK-RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMD 581 (659)
T ss_pred cC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh-ccCCCHHHHHHHHHHcCCHHHHhhcCCccccccccc
Confidence 64 4579999999998887 9999998753211000 0111234678899999998766553210 11335
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.||||||||++|||+|+++|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.
T Consensus 582 ~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 8999999999999999999999999999999999999999998875 3789999999997 3588999999963
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.7e-35 Score=359.42 Aligned_cols=206 Identities=27% Similarity=0.451 Sum_probs=173.7
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcee-eEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVS-GKL 95 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~-G~I 95 (612)
..++++|++++++. ..++++|+|+|+++++||.++|+||||||||||+++|.|.+++ .+ |+|
T Consensus 613 ~~I~~~nvsf~y~~---------------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I 675 (1622)
T PLN03130 613 PAISIKNGYFSWDS---------------KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASV 675 (1622)
T ss_pred CceEEEeeEEEccC---------------CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceE
Confidence 36999999999831 1235799999999999999999999999999999999999977 68 899
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSRIG 168 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 168 (612)
.+ ++.++||+|++.+++. |++||+.|+.. ..+++.+++++..+|.+. .+|.+|
T Consensus 676 ~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~---------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IG 735 (1622)
T PLN03130 676 VI----------RGTVAYVPQVSWIFNA-TVRDNILFGSP---------FDPERYERAIDVTALQHDLDLLPGGDLTEIG 735 (1622)
T ss_pred EE----------cCeEEEEcCccccCCC-CHHHHHhCCCc---------ccHHHHHHHHHHhCcHHHHHhCCCccccccc
Confidence 74 4579999999999986 99999998631 123567777777777543 366775
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT-LLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
+....||||||||++||||+..+|++++||||||+||+.+..++++ .++... .|+|+|++||+++ ..+.+|+|
T Consensus 736 --e~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~I 809 (1622)
T PLN03130 736 --ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRI 809 (1622)
T ss_pred --CCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEE
Confidence 3345799999999999999999999999999999999999998865 566553 4799999999985 56789999
Q ss_pred EEEcCCeEEEecChhhHH
Q 046991 248 VLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~~~ 265 (612)
++|++|++++.|+.+++.
T Consensus 810 i~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 810 ILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred EEEeCCEEEEeCCHHHHH
Confidence 999999999999998874
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-34 Score=329.92 Aligned_cols=205 Identities=28% Similarity=0.407 Sum_probs=163.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||++++ +++.+|+|+||++++||+++|+||||||||||||+|+|..+| ++|+|.+
T Consensus 3 ~l~i~~ls~~~------------------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~ 62 (635)
T PRK11147 3 LISIHGAWLSF------------------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIY 62 (635)
T ss_pred EEEEeeEEEEe------------------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEe
Confidence 68999999988 446799999999999999999999999999999999999876 7899999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHH------------------------------HHHcc--CCCCCHHH
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMC------------------------------SALLR--LTAGRRKQ 145 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~------------------------------~~~l~--~~~~~~~~ 145 (612)
+|.. .++|++|++......+|.+++.. ...+. .......+
T Consensus 63 ~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (635)
T PRK11147 63 EQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ 134 (635)
T ss_pred CCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCccc
Confidence 8632 25667765433333455554321 10000 00000112
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 046991 146 AASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQ 225 (612)
Q Consensus 146 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~ 225 (612)
..++++++++.+|+.. ++.++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 135 ~~~~~~~~l~~lgl~~--~~~~~------~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---- 202 (635)
T PRK11147 135 LENRINEVLAQLGLDP--DAALS------SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---- 202 (635)
T ss_pred HHHHHHHHHHhCCCCC--CCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----
Confidence 3457889999999963 67776 89999999999999999999999999999999999999999999986
Q ss_pred CcEEEEEccCCchHHHhccCeEEEEcCCeEE-EecChhh
Q 046991 226 GKTIILTIHQPGFRILELFDRLVLLSNGFVV-HNGTLNH 263 (612)
Q Consensus 226 g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 263 (612)
+.|||++|||+.. +.+.||++++|++|+++ +.|+.++
T Consensus 203 ~~tvlivsHd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 203 QGSIIFISHDRSF-IRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CCEEEEEeCCHHH-HHHhcCeEEEEECCEEEEecCCHHH
Confidence 2499999999984 88899999999999997 5687654
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.6e-34 Score=277.28 Aligned_cols=158 Identities=22% Similarity=0.349 Sum_probs=133.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
..+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q---------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH----------
Confidence 35679999999999999999999999999999999953 379999988732 112345788877
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHHhhC--CCEEEEeCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDLVHD--PAVVLIDEPT 203 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~--p~lllLDEPt 203 (612)
.++++.++|.. ..++++. .||||||||++||++|+.+ |++++|||||
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~~------~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKLS------TLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCcC------cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 24577788875 3566665 8999999999999999999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 204 SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 204 sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
+|||+.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|.+|+.
T Consensus 118 ~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 118 TGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 99999999999999999865 58999999999973 4 68999999976544
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-35 Score=272.25 Aligned_cols=178 Identities=27% Similarity=0.435 Sum_probs=158.9
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh--hhhcccEEEEecCCCcCCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA--EHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~l 124 (612)
++..++.++||++.+||.+-|.||||||||||||+|+|+.+| .+|+|.++|.+++. +.+++.+-|+-.++.+=+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p--~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP--DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC--CCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 677899999999999999999999999999999999999987 79999999998754 33567788888889999999
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 125 TVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
||+|||.|-..+... ...+.+.++++.+||....|.+++ +||-||||||+|||-+++.+++.|||||++
T Consensus 91 Ta~ENL~F~~~~~~~-----~~~~~i~~Al~~vgL~g~~dlp~~------~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS-----GNAATIWEALAQVGLAGLEDLPVG------QLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC-----CchhhHHHHHHHcCcccccccchh------hcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999997654321 123568899999999999999998 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCch
Q 046991 205 GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
+||......+-.++..-+.+ |-.||.+||||..
T Consensus 160 aLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999999999999988765 5699999999874
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=266.22 Aligned_cols=217 Identities=31% Similarity=0.467 Sum_probs=174.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++++|+.| +...--+||||.+.|||+++|+|+|||||||||++|++++.| +.|+|.+
T Consensus 6 LL~V~~lsk~Y------------------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y 65 (258)
T COG4107 6 LLSVSGLSKLY------------------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTY 65 (258)
T ss_pred ceeehhhhhhh------------------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEE
Confidence 67778887766 556678999999999999999999999999999999999987 7999998
Q ss_pred CC---eeCC-----hh----hhcccEEEEecCCC--c----CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC
Q 046991 98 ND---RPMD-----AE----HFRRISGYVTQDDA--L----FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGL 159 (612)
Q Consensus 98 ~g---~~~~-----~~----~~~~~i~yv~Q~~~--l----~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL 159 (612)
.- ++.+ .. -.|-.-|+|.|+|. + ...-.+.|-++-... | ...+.++.+.++++++.+
T Consensus 66 ~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-R----HYG~iR~~a~~WL~~VEI 140 (258)
T COG4107 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-R----HYGNIRAEAQDWLEEVEI 140 (258)
T ss_pred EcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-h----hhhhHHHHHHHHHHhccc
Confidence 54 3322 11 13345799999963 2 222344455442111 1 123456678899999998
Q ss_pred cccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH
Q 046991 160 DHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239 (612)
Q Consensus 160 ~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 239 (612)
+.. ++ +..++..|||++||+.|||-|++.|+++|+||||.|||..-+..++++++.+.++.|.+++++|||...
T Consensus 141 ~~~---Ri--DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V- 214 (258)
T COG4107 141 DLD---RI--DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV- 214 (258)
T ss_pred Ccc---cc--cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-
Confidence 753 22 455679999999999999999999999999999999999999999999999999999999999999974
Q ss_pred HHhccCeEEEEcCCeEEEecChhhHH
Q 046991 240 ILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 240 i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+.-++||+++|++|++++.|-.+.+.
T Consensus 215 arLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 215 ARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHhhhcceeecCCCEeccccccccc
Confidence 66689999999999999999877654
No 357
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=267.48 Aligned_cols=144 Identities=39% Similarity=0.705 Sum_probs=131.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCC
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~l 124 (612)
++.+++++|+++++||+++|+||||||||||+++|+|.+++ .+|+|+++|.++.. ...++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------- 80 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ-------- 80 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee--------
Confidence 34699999999999999999999999999999999999976 79999999987642 345677899988
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 125 TVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
|||||+||++||++++.+|++++|||||+
T Consensus 81 ---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 79999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 205 GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
|||..++..+.+.++++.+. ++|++++||+++ ++...||+++++++|+
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 110 GLDPASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999999998754 789999999998 4788899999999875
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.9e-34 Score=323.50 Aligned_cols=189 Identities=26% Similarity=0.376 Sum_probs=158.5
Q ss_pred cccccCc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE-----------ECCeeCCh--hh-
Q 046991 42 VTSKKDP-KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL-----------VNDRPMDA--EH- 106 (612)
Q Consensus 42 ~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~-----------~~g~~~~~--~~- 106 (612)
++++++. ..+|++++ .+++||++||+||||||||||+|+|+|.++| .+|+|. ++|+++.. ..
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3445555 46999999 9999999999999999999999999999977 689997 89987642 11
Q ss_pred --hcccEEEEecCCCcCCC---CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHH
Q 046991 107 --FRRISGYVTQDDALFPL---LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGER 181 (612)
Q Consensus 107 --~~~~i~yv~Q~~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGer 181 (612)
.+..+++.+|.....|. .||+|++... +..++++++++.+||.+..++.++ +||||||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~ 218 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV-----------DERGKLDEVVERLGLENILDRDIS------ELSGGEL 218 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh-----------hHHHHHHHHHHHcCCchhhcCChh------hCCHHHH
Confidence 12345666665443332 2999998631 234578999999999988899887 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 182 RRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 182 qRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
||++||++|+.+|++|+|||||++||+.++..+.+.|++++ + |+|||+++|+++ ++..++|++++|+++
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999996 4 899999999998 588999999999763
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.9e-34 Score=349.56 Aligned_cols=209 Identities=22% Similarity=0.388 Sum_probs=168.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+
T Consensus 636 ~i~~~~~~~~~~~----------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~ 697 (1522)
T TIGR00957 636 SITVHNATFTWAR----------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHM 697 (1522)
T ss_pred cEEEEEeEEEcCC----------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEE
Confidence 6999999998831 235699999999999999999999999999999999999977 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHH---HHHHcCCc-ccccccccCCCCC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRG---LLKELGLD-HVASSRIGGGSSN 173 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~---~l~~lgL~-~~~~~~vg~~~~~ 173 (612)
+| .++||+|++.+++ .|++||+.++... .+ +..+++.+ +.+.++.. +-.+|.+| +.+
T Consensus 698 ~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~-----~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig--~~g 758 (1522)
T TIGR00957 698 KG----------SVAYVPQQAWIQN-DSLRENILFGKAL-----NE-KYYQQVLEACALLPDLEILPSGDRTEIG--EKG 758 (1522)
T ss_pred CC----------EEEEEcCCccccC-CcHHHHhhcCCcc-----CH-HHHHHHHHHhCCHHHHHhcCCCCCceec--CCC
Confidence 87 4899999998876 5999999875321 11 11111111 22333322 22355664 345
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMV-VNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
..||||||||++||||+..+|++++||||||+||+.++..+.+.+.+.. ...++|+|++||+++. + +.+|++++|++
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~ 836 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSG 836 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecC
Confidence 6899999999999999999999999999999999999999999987531 1247899999999973 4 56999999999
Q ss_pred CeEEEecChhhHH
Q 046991 253 GFVVHNGTLNHLE 265 (612)
Q Consensus 253 G~iv~~G~~~~~~ 265 (612)
|+++..|+.+++.
T Consensus 837 G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 837 GKISEMGSYQELL 849 (1522)
T ss_pred CeEEeeCCHHHHH
Confidence 9999999998864
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=297.58 Aligned_cols=218 Identities=26% Similarity=0.425 Sum_probs=184.1
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..+.|+|+++.|. +.+++|+++||.+++|+.+||+||||+||||++++|-..+++ .+|.|.
T Consensus 261 g~v~F~~V~F~y~-----------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~ 321 (497)
T COG5265 261 GAVAFINVSFAYD-----------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSIT 321 (497)
T ss_pred ceEEEEEEEeecc-----------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEE
Confidence 3588999999883 668899999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHH-----HHHHHcCCccccccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVR-----GLLKELGLDHVASSRIG 168 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~vg 168 (612)
+||+++. .+.+|+.||.||||..||.+ |...|+.++. +..+.++..+.++ +.++ .+.+-.++.||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vg 394 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGR----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVG 394 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccC----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccc
Confidence 9999874 36788999999999999987 9999998762 2223333322222 2222 34567889997
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+ ..-.|||||||||+|||+++.+|++|++||.||.||..+.+++...|++.+ .|+|.+++.|.++. + --+|.|+
T Consensus 395 e--rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlst-i-~~adeii 468 (497)
T COG5265 395 E--RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLST-I-IDADEII 468 (497)
T ss_pred h--heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhh-c-cCCceEE
Confidence 3 333699999999999999999999999999999999999999999999986 58899999999973 4 5689999
Q ss_pred EEcCCeEEEecChhhHHH
Q 046991 249 LLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~~ 266 (612)
+|++|+|++.|+.+++..
T Consensus 469 vl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 469 VLDNGRIVERGTHEELLA 486 (497)
T ss_pred EeeCCEEEecCcHHHHHH
Confidence 999999999999988764
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.4e-33 Score=341.76 Aligned_cols=189 Identities=24% Similarity=0.444 Sum_probs=156.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
+++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++. ||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCCc-cHHH
Confidence 5799999999999999999999999999999999999987 799999988 38999999999886 9999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
|+.|+... ..+ +.+++++..+|.+ ..+|.+| +....||||||||++||||++.+|++++|||
T Consensus 506 NI~~g~~~-----~~~----~~~~~~~~~~L~~~l~~l~~g~~t~vg--~~g~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 506 NIIFGLSY-----DEY----RYTSVIKACQLEEDIALFPEKDKTVLG--EGGITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred HHHhcccc-----chH----HHHHHHHHHhHHHHHHhcccccccccc--CcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99986321 111 1222222223222 2245564 3346899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 202 PTSGLDSASALHVVT-LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 202 PtsgLD~~~~~~i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
||+|||+.++..+.+ +++++. .|+|+|++||+++. + +.||++++|++|+++..|+.+++.
T Consensus 575 p~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 575 PFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999998 467664 37999999999973 4 569999999999999999988864
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.2e-33 Score=318.18 Aligned_cols=219 Identities=23% Similarity=0.270 Sum_probs=162.9
Q ss_pred CCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-Ccee
Q 046991 14 KALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS-RKVS 92 (612)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~-~~~~ 92 (612)
...-+|+++|++++| +++.+|+|+|++|++||.+||+|||||||||||++|+|+... .+.+
T Consensus 173 ~~~~~I~i~nls~~y------------------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~ 234 (718)
T PLN03073 173 PAIKDIHMENFSISV------------------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN 234 (718)
T ss_pred CCceeEEEceEEEEe------------------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC
Confidence 355679999999998 445699999999999999999999999999999999997421 1357
Q ss_pred eEEEECCeeC-----Ch------------hhhcccEEEEecCCCcCCCCCHHHHHHHH------------------HHcc
Q 046991 93 GKLLVNDRPM-----DA------------EHFRRISGYVTQDDALFPLLTVEETLMCS------------------ALLR 137 (612)
Q Consensus 93 G~I~~~g~~~-----~~------------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~------------------~~l~ 137 (612)
|+|.+.++.. +. ...++.++|++|++.+... ++.++.... ..+.
T Consensus 235 g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 313 (718)
T PLN03073 235 CQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLE 313 (718)
T ss_pred CEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHH
Confidence 8887655432 11 0012335667765433211 111111000 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 046991 138 LTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT 216 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 216 (612)
. .......+++.++++.+|+. +..++.++ .||||||||++||++|+.+|++|||||||++||+.++..+.+
T Consensus 314 ~--~~~~~~~~r~~~~L~~lgl~~~~~~~~~~------~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~ 385 (718)
T PLN03073 314 L--IDAYTAEARAASILAGLSFTPEMQVKATK------TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET 385 (718)
T ss_pred h--cCcchHHHHHHHHHHHCCCChHHHhCchh------hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 0 00113345677888889986 45677776 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE-EecChhhH
Q 046991 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV-HNGTLNHL 264 (612)
Q Consensus 217 ~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 264 (612)
.|+++ +.|||++|||.. .+.+.||++++|++|++. |.|+.++.
T Consensus 386 ~L~~~----~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 386 YLLKW----PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHc----CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99875 579999999987 488899999999999996 67776543
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2e-32 Score=301.75 Aligned_cols=207 Identities=29% Similarity=0.419 Sum_probs=173.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++|+++.+ +.+++++|+|+++.+|+.+||+|+||||||||||+|+|...| .+|+|.
T Consensus 2 ~~i~~~~ls~~~------------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~ 61 (530)
T COG0488 2 SMITLENLSLAY------------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVT 61 (530)
T ss_pred ceEEEeeeEEee------------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEe
Confidence 468899999888 678899999999999999999999999999999999999977 799997
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc-------------CCC---------------CCHHHHHH
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLR-------------LTA---------------GRRKQAAS 148 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-------------~~~---------------~~~~~~~~ 148 (612)
..+. ..++|++|++.+.+..||.+.+.-+..-. ... ....+.+.
T Consensus 62 ~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~ 133 (530)
T COG0488 62 RPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEA 133 (530)
T ss_pred ecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHH
Confidence 6432 24899999999999999999886542100 000 00001235
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcE
Q 046991 149 RVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKT 228 (612)
Q Consensus 149 ~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 228 (612)
++..++..+|+.+. +++++ +||||||.||++|++|+.+|++|+|||||+.||..+..-+-+.|++. .| |
T Consensus 134 ~~~~~L~gLg~~~~-~~~~~------~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-t 202 (530)
T COG0488 134 RAEEALLGLGFPDE-DRPVS------SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-T 202 (530)
T ss_pred HHHHHHhcCCCCcc-cCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-c
Confidence 77888999999877 88887 89999999999999999999999999999999999999999999864 46 9
Q ss_pred EEEEccCCchHHHhccCeEEEEcCCeEE-EecChhh
Q 046991 229 IILTIHQPGFRILELFDRLVLLSNGFVV-HNGTLNH 263 (612)
Q Consensus 229 ii~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 263 (612)
+|++|||-.. +-+.|++|+-++.|++. |.|.-+.
T Consensus 203 viiVSHDR~F-Ld~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 203 VIVVSHDRYF-LDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred EEEEeCCHHH-HHHHhhheEEecCCceeEecCCHHH
Confidence 9999999876 88899999999999875 5666543
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-31 Score=310.86 Aligned_cols=215 Identities=29% Similarity=0.450 Sum_probs=180.4
Q ss_pred CCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 046991 11 GSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90 (612)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~ 90 (612)
+.......++++|.+++... .+..+.|+|||+++++|+++||+||-|||||+||.+|.|.++.
T Consensus 511 ~~~~~~~~i~i~~~sfsW~~---------------~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-- 573 (1381)
T KOG0054|consen 511 PDEAGENAIEIKNGSFSWDS---------------ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-- 573 (1381)
T ss_pred CCCCCCceEEEeeeeEecCC---------------CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc--
Confidence 44446667999999988731 1344589999999999999999999999999999999999976
Q ss_pred eeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-
Q 046991 91 VSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG- 169 (612)
Q Consensus 91 ~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~- 169 (612)
.+|+|.++|. ++||+|++.+++. |||||+.|+.. -.+++-+++++...|++..+..+.|
T Consensus 574 ~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~---------~d~~rY~~Vi~aC~L~~Dle~Lp~GD 633 (1381)
T KOG0054|consen 574 LSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSP---------YDEERYDKVIKACALKKDLEILPFGD 633 (1381)
T ss_pred ccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCcc---------ccHHHHHHHHHHccCHhHHhhcCCCC
Confidence 8999999986 8999999999987 99999999742 2345677788888887655444432
Q ss_pred ----CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 170 ----GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 170 ----~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
++..-.||||||||+++|||+-+|+++++||.|.|++|+....++.+-.-+-. -.++|+|++|||.+ ..+.+|
T Consensus 634 ~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~--~L~~ad 710 (1381)
T KOG0054|consen 634 LTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQ--FLPHAD 710 (1381)
T ss_pred cceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchh--hhhhCC
Confidence 34556899999999999999999999999999999999999999986444332 24799999999975 689999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
.|++|++|++...|+.+|+.
T Consensus 711 ~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 711 QIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EEEEecCCeEecccCHHHHH
Confidence 99999999999999999986
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.98 E-value=5.3e-32 Score=333.31 Aligned_cols=192 Identities=30% Similarity=0.451 Sum_probs=152.2
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+++++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++||+|++.+++ .||
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIMN-ATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccCC-CcH
Confidence 346799999999999999999999999999999999999977 78999763 46999999998875 599
Q ss_pred HHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEE
Q 046991 127 EETLMCSALLRLTAGRRKQAA-----SRVRGLLKEL--GLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLI 199 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllL 199 (612)
+||+.++... ..+... ...++.++.+ |+. +.+| +....||||||||++|||||+.+|++++|
T Consensus 738 ~enI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~----t~i~--~~g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 738 RGNILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLE----TEIG--EKGVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred HHHHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccch----HHhc--CCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999874210 111110 1123334443 443 3332 23358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
||||++||+.++..+++.+..... .|+|+|++||+++. .+.+|++++|++|++++.|+.+++.
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999875432222 47999999999963 4789999999999999999988764
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.3e-31 Score=313.81 Aligned_cols=223 Identities=22% Similarity=0.331 Sum_probs=189.5
Q ss_pred CCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 046991 10 SGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR 89 (612)
Q Consensus 10 ~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~ 89 (612)
..+++..-.++++|++.+|. .+...+|||||++|+|||.+||+|..|||||||.++|-.+..+
T Consensus 1130 p~~WP~~G~I~f~~~~~RYr----------------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~- 1192 (1381)
T KOG0054|consen 1130 PPSWPSKGEIEFEDLSLRYR----------------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP- 1192 (1381)
T ss_pred CCCCCCCCeEEEEEeEEEeC----------------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-
Confidence 45667777999999999993 1346799999999999999999999999999999999999977
Q ss_pred ceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc----
Q 046991 90 KVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV---- 162 (612)
Q Consensus 90 ~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~---- 162 (612)
.+|+|.+||.++.. .++|++++.+||||.+|.. |+|+||.=. .+-.++++-++||..+|.+.
T Consensus 1193 -~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf---------~e~sD~~IW~ALe~~~Lk~~v~~~ 1261 (1381)
T KOG0054|consen 1193 -AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF---------DEYSDDEIWEALERCQLKDVVSSL 1261 (1381)
T ss_pred -cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc---------cccCHHHHHHHHHHhChHHHHhhC
Confidence 79999999999864 7899999999999999998 999999621 11123445666666666543
Q ss_pred ---ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH
Q 046991 163 ---ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239 (612)
Q Consensus 163 ---~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 239 (612)
.|+.|. +....+|-||||-+++||||+++++||+|||+|++.|+.+-..|.+.|++-= .++|||.+-|..+.
T Consensus 1262 p~~Ld~~v~--egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T- 1336 (1381)
T KOG0054|consen 1262 PGGLDSEVS--EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT- 1336 (1381)
T ss_pred CcCCCceec--CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-
Confidence 455553 3445899999999999999999999999999999999999999999999853 47999999999984
Q ss_pred HHhccCeEEEEcCCeEEEecChhhHHH
Q 046991 240 ILELFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 240 i~~~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
+. -+|||+||++|+++++|+|+++.+
T Consensus 1337 Vm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1337 VM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred hh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 54 579999999999999999998764
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.9e-31 Score=264.10 Aligned_cols=192 Identities=23% Similarity=0.342 Sum_probs=137.3
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCceeeEEEEC-----------C--eeCChhhhc-ccE
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLL-EILAGKISSRKVSGKLLVN-----------D--RPMDAEHFR-RIS 111 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL-~~L~G~~~~~~~~G~I~~~-----------g--~~~~~~~~~-~~i 111 (612)
.+..+|++|||++++||+++|+||||||||||+ ..+.. +|++.+. | ........+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 456799999999999999999999999999995 44431 1221110 0 000001111 223
Q ss_pred EEEecCCC--cCCCCCHH---HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHH
Q 046991 112 GYVTQDDA--LFPLLTVE---ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRAS 185 (612)
Q Consensus 112 ~yv~Q~~~--l~~~lTv~---E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ 185 (612)
++..|++. +.+..+|. |...+...+. ......++ .+.++.+||.+ ..++.+. +||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~~~l~~~~~~~~~~------~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF----ARVGIRER-LGFLVDVGLGYLTLSRSAP------TLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh----hhhhHHHH-HHHHHHCCCCcccccCccC------cCCHHHHHHHH
Confidence 44444432 23444554 3222221111 11122233 56899999976 4677665 89999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEE
Q 046991 186 IGVDLVHDP--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVH 257 (612)
Q Consensus 186 ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~ 257 (612)
||++|+.+| ++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++ +.||++++| ++|++++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEe
Confidence 999999998 59999999999999999999999999965 5899999999997 35 699999999 9999998
Q ss_pred ec
Q 046991 258 NG 259 (612)
Q Consensus 258 ~G 259 (612)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=2.2e-31 Score=245.20 Aligned_cols=134 Identities=46% Similarity=0.808 Sum_probs=120.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHH
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.+||+++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999976 79999999999864 557789999999999999999999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
| ...++++++++.+++.+..++.++ .....||||||||++||++|+.+|++++|||||+
T Consensus 79 ~---------------~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N---------------ESDERIEEVLKKLGLEDLLDRKIG--QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H---------------HHHHHHHHHHHHTTHGGGTGSBGT--SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c---------------cccccccccccccccccccccccc--cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 233568899999999988888873 2225999999999999999999999999999996
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.8e-31 Score=243.97 Aligned_cols=214 Identities=29% Similarity=0.387 Sum_probs=172.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|.++|+++++.... ...-.-++++|+||+++.||++++-||||||||||||+|-|-+.+ ++|+|+
T Consensus 3 ~~l~v~~~~KtFtlH~-----------q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~--d~G~I~ 69 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-----------QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP--DEGQIL 69 (235)
T ss_pred ceeeeecchhheEeee-----------cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC--CCceEE
Confidence 4678999998884211 112245799999999999999999999999999999999999977 799999
Q ss_pred ECCee--CC-----h----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccc
Q 046991 97 VNDRP--MD-----A----EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 97 ~~g~~--~~-----~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
+..+. ++ + +-.++.+|||.|--...|..+..|.++-.+.-+ +.+.+..++++.+++.++++.+..=.
T Consensus 70 v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~--gv~~~~a~~~a~~Ll~rLnlperLW~ 147 (235)
T COG4778 70 VRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR--GVPREVARAKAADLLTRLNLPERLWS 147 (235)
T ss_pred EEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCCHHHhc
Confidence 86432 21 1 224567999999988888888777776554222 33677788899999999999865433
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.. +.+.||||+|||.|||.++.|-+||+|||||+.||..++.-+++++++- |..|..+|=+-||-+. -...+|
T Consensus 148 La-----PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeev-re~vad 220 (235)
T COG4778 148 LA-----PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEV-REAVAD 220 (235)
T ss_pred CC-----CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHH-HHHHhh
Confidence 32 2389999999999999999999999999999999999999999999985 5679999999999653 456899
Q ss_pred eEEEEcC
Q 046991 246 RLVLLSN 252 (612)
Q Consensus 246 ~v~lL~~ 252 (612)
|++-+..
T Consensus 221 R~~~~~~ 227 (235)
T COG4778 221 RLLDVSA 227 (235)
T ss_pred heeeccc
Confidence 9998864
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.2e-30 Score=261.92 Aligned_cols=196 Identities=24% Similarity=0.386 Sum_probs=154.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCC-----CCC---------ceeeEEEECCeeCCh-----
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILA-----GKI-----SSR---------KVSGKLLVNDRPMDA----- 104 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~-----G~~-----~~~---------~~~G~I~~~g~~~~~----- 104 (612)
..-|+|||..|+.|++++|.|+||||||||++.+. ... .+. ...--|.++..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44699999999999999999999999999998552 110 010 011246677766531
Q ss_pred --------hhhcc----------------cEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc
Q 046991 105 --------EHFRR----------------ISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD 160 (612)
Q Consensus 105 --------~~~~~----------------~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~ 160 (612)
+..|+ .+.|..++......+||.|++.|...+. ..+++.++++.+||.
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--------hHHHHHHHHHHcCCc
Confidence 11111 2456666666678899999999876431 134677899999998
Q ss_pred c-cccccccCCCCCCccChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 161 H-VASSRIGGGSSNCGISGGERRRASIGVDLVHD---PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 161 ~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~---p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
. ..++.+. .||||||||+.||++|+.+ |++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++
T Consensus 160 ~l~l~~~~~------~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~ 232 (261)
T cd03271 160 YIKLGQPAT------TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNL 232 (261)
T ss_pred hhhhcCccc------cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 7 4666665 8999999999999999996 799999999999999999999999999975 588999999999
Q ss_pred chHHHhccCeEEEE------cCCeEEEecCh
Q 046991 237 GFRILELFDRLVLL------SNGFVVHNGTL 261 (612)
Q Consensus 237 ~~~i~~~~D~v~lL------~~G~iv~~G~~ 261 (612)
+. + +.+|+++.| ++|++++.|++
T Consensus 233 ~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV-I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 73 4 679999999 89999999874
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=9.3e-30 Score=280.62 Aligned_cols=205 Identities=32% Similarity=0.444 Sum_probs=171.5
Q ss_pred CCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee
Q 046991 14 KALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93 (612)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G 93 (612)
.+...++++|+++.|. +++.+++++||.+.+|+.+||+||||+|||||||+|+|...+ .+|
T Consensus 317 ~g~~vl~~~~~~~~y~-----------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G 377 (530)
T COG0488 317 LGKLVLEFENVSKGYD-----------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSG 377 (530)
T ss_pred CCCeeEEEeccccccC-----------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCc
Confidence 4677899999998882 337899999999999999999999999999999999999876 589
Q ss_pred EEEECCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 046991 94 KLLVNDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGS 171 (612)
Q Consensus 94 ~I~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 171 (612)
+|.+.-. -.+||..|+. .+.++.|+.|++.-.. + +..+..+...|..++++. ...++|+
T Consensus 378 ~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~----~~~e~~~r~~L~~f~F~~~~~~~~v~--- 438 (530)
T COG0488 378 TVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGF----P----DGDEQEVRAYLGRFGFTGEDQEKPVG--- 438 (530)
T ss_pred eEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhC----c----cccHHHHHHHHHHcCCChHHHhCchh---
Confidence 9876421 2489999986 4458889999986421 1 111567889999999974 3567776
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.||||||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .| |||++|||... +-+.+++++.+.
T Consensus 439 ---~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~G-tvl~VSHDr~F-l~~va~~i~~~~ 510 (530)
T COG0488 439 ---VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EG-TVLLVSHDRYF-LDRVATRIWLVE 510 (530)
T ss_pred ---hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CC-eEEEEeCCHHH-HHhhcceEEEEc
Confidence 89999999999999999999999999999999999999999999875 25 99999999986 899999999999
Q ss_pred CCeEE-EecChhhHH
Q 046991 252 NGFVV-HNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv-~~G~~~~~~ 265 (612)
+ ++. +.|..++..
T Consensus 511 ~-~~~~~~g~y~~y~ 524 (530)
T COG0488 511 D-KVEEFEGGYEDYL 524 (530)
T ss_pred C-ceeEcCCCHHHHH
Confidence 8 554 447665543
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=4.8e-31 Score=243.42 Aligned_cols=195 Identities=29% Similarity=0.445 Sum_probs=172.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHH
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
|-.+|+++..||++-++|||||||||||-.++|+.+ .+|+|.++|+++.. .++.++-+|..|+..-...|.|+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 678999999999999999999999999999999985 48999999999853 456677799999877777789999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh-----CC--CEEEEeC
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH-----DP--AVVLIDE 201 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~-----~p--~lllLDE 201 (612)
.|... . +.++....++++...++|++...+.+. +|||||-|||-+|...++ || ++|+|||
T Consensus 92 YL~L~----q---P~~~~a~~i~~i~~~L~l~DKL~Rs~~------qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----Q---PDKTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----C---chHHHHHHHHHHHhhhcccchhhhhhh------hcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 88643 2 345667778999999999998888886 899999999999987664 44 6999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
|.++||...+..+-.+|.++++ .|.+||++.||.+ ...+.+|++++|+.|+++..|..+|+
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhh
Confidence 9999999999999999999996 5999999999999 48899999999999999999999886
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.6e-29 Score=268.90 Aligned_cols=202 Identities=27% Similarity=0.502 Sum_probs=174.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecC---CCcCCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQD---DALFPL 123 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~---~~l~~~ 123 (612)
.++|+||++++||+++|-|-=|||+|-|+++|.|..++ .+|+|.+||+++.. +..+..++|||.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 57899999999999999999999999999999997655 69999999998742 4567889999987 568999
Q ss_pred CCHHHHHHHHHHccCC---CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEE
Q 046991 124 LTVEETLMCSALLRLT---AGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLI 199 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~---~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllL 199 (612)
++|+||+.++...+.. ..+....++.++++.+.+++.. ..++.++ .||||.+|||.||+.|..+|++|||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~------~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG------TLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh------cCCchhhhhHHHHHHHhcCCCEEEE
Confidence 9999999887322211 1245556677999999999963 3456666 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChh
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLN 262 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 262 (612)
||||.|.|.-++.+|.++++++|++ |++||++|-++. |+..+||||++|++|+++..-+.+
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELP-ELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999965 999999999997 799999999999999998754443
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=5.5e-30 Score=251.06 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=133.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-------ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCC
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-------KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-------~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 125 (612)
+++++++++| +++|+||||||||||+++|+|+..+. ...|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999997542 12457888887754333457899999998766
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh----hCCCEEEEeC
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV----HDPAVVLIDE 201 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDE 201 (612)
|. .. ..++++++++. .+..++.+. .||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~--------~~~~~~~~l~~---~~~~~~~~~------~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II--------SQGDVSEIIEA---PGKKVQRLS------LLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE--------ehhhHHHHHhC---CCccccchh------hcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 12456677776 445566665 89999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999853 589999999986 3478999999964
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.1e-28 Score=247.64 Aligned_cols=187 Identities=16% Similarity=0.273 Sum_probs=135.9
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCceee--------EEEECCe
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK----------------ISSRKVSG--------KLLVNDR 100 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~----------------~~~~~~~G--------~I~~~g~ 100 (612)
.++++.++++++ |++++|+||||||||||+++|++. +.+ .+| +|.+++.
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~--~~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHE--GSGPSVMSAYVEIIFDNS 83 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeC--CCCCCCceEEEEEEEEcC
Confidence 345677888887 789999999999999999999843 222 234 5666553
Q ss_pred e----CC--hhhhcccEEEEecCCCcCC-CCCHHHHHHHHHHccCCCCCHH--HHHHHHHHHHHHcCCcccccccccCCC
Q 046991 101 P----MD--AEHFRRISGYVTQDDALFP-LLTVEETLMCSALLRLTAGRRK--QAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 101 ~----~~--~~~~~~~i~yv~Q~~~l~~-~lTv~E~l~~~~~l~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+ .. ....++.++|++|+..+++ ..|..|...+...+........ ..+.+ +.+.+++.+..+..+.
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~~~~--- 157 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQEMQ--- 157 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhcccccccccc---
Confidence 2 11 1235677999999888877 4677776666554432211000 00122 3333455554555554
Q ss_pred CCCccChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 172 SNCGISGGERRRASIGVDLVH----DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +++||+++|++ ++.++||++
T Consensus 158 ---~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~--~~~~~~d~i 230 (243)
T cd03272 158 ---QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP--ELLEVADKF 230 (243)
T ss_pred ---ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHhhCCEE
Confidence 899999999999999973 5899999999999999999999999999853 78899999986 478999999
Q ss_pred EEEc
Q 046991 248 VLLS 251 (612)
Q Consensus 248 ~lL~ 251 (612)
++|.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9985
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=5.1e-29 Score=246.89 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=138.0
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCC
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 124 (612)
.++++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++++++++|+..+++.+
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCC
Confidence 4467789999987 8999999999999999999972 2333321 11225689999999899999
Q ss_pred CHHHHHHHHHHcc------CCCCCHHHHHH--HHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh----
Q 046991 125 TVEETLMCSALLR------LTAGRRKQAAS--RVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH---- 192 (612)
Q Consensus 125 Tv~E~l~~~~~l~------~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~---- 192 (612)
|++|++.+..... ..+...++... ..+++++.++|.+..+++++ .+|+|||||++||++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~------~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS------NLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh------hcCHHHHHHHHHHHHHHhcccC
Confidence 9999887654321 01111111111 12567778888887888776 899999999999999974
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|+++++||||+|||+.++..+.+.|++++ + +.|+|++||++ ++.+.||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERT-K-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 479999999999999999999999999985 3 56888888996 47899999999964
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=8.4e-28 Score=244.60 Aligned_cols=179 Identities=16% Similarity=0.274 Sum_probs=137.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCe-eC-Ch----hhhcccEEEEecCC---------CcCCCCCH
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR-PM-DA----EHFRRISGYVTQDD---------ALFPLLTV 126 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~-~~-~~----~~~~~~i~yv~Q~~---------~l~~~lTv 126 (612)
..+++|+||||||||||+++|++.+.+. ..|++...|. ++ .. ...+..+++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4499999999999999999999998652 3467877775 32 11 12234789999985 34678899
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc--------------------ccccccccCCCCCCccChHHHHHHHH
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLD--------------------HVASSRIGGGSSNCGISGGERRRASI 186 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~~~~~LSgGerqRv~i 186 (612)
.+++......+.....++...+++.++++.+|+. +..++.+ ..||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~------~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL------TELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc------cccCHHHHHHHHH
Confidence 9988654322110001223447889999999996 2233444 4899999999999
Q ss_pred HHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 187 GVDLV----HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 187 a~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
|++|+ .+|+++++||||+|||+.++..+.+.|++++ + |.|||++||++ ++.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999984 3 78999999995 5788999998875
No 378
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.4e-28 Score=245.91 Aligned_cols=208 Identities=27% Similarity=0.397 Sum_probs=170.9
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
--.|+++|+.|.|+. ..-=+..||++|+.||++-|+|.||||||||++.|.|+.+| .+|+|
T Consensus 320 ~~~lelrnvrfay~~-----------------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I 380 (546)
T COG4615 320 WKTLELRNVRFAYQD-----------------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEI 380 (546)
T ss_pred ccceeeeeeeeccCc-----------------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCce
Confidence 347999999999841 12347889999999999999999999999999999999987 79999
Q ss_pred EECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 96 LVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
++||+|++. +++|+.++-|+-|-.+|+.+--.|+ +...+.++..++++.|.+.-.-+=| +-.
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~--------------~as~q~i~~~LqrLel~~ktsl~d~-~fs 445 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG--------------KASPQLIEKWLQRLELAHKTSLNDG-RFS 445 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc--------------CCChHHHHHHHHHHHHhhhhcccCC-ccc
Confidence 999999864 5678888888888888775311111 0123457888888888764322211 223
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+-.||.|||||+++-.||+-+-+|+++||=-+.-||.-+..+.+.+--+-+++|+||+.+|||-. -+..+||++.+++
T Consensus 446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~ 523 (546)
T COG4615 446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN 523 (546)
T ss_pred ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999888777889999999999965 5899999999999
Q ss_pred CeEEEec
Q 046991 253 GFVVHNG 259 (612)
Q Consensus 253 G~iv~~G 259 (612)
|++++.-
T Consensus 524 G~~~e~t 530 (546)
T COG4615 524 GQLSELT 530 (546)
T ss_pred Cceeecc
Confidence 9998764
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=5.2e-26 Score=240.69 Aligned_cols=227 Identities=27% Similarity=0.369 Sum_probs=190.9
Q ss_pred CCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 046991 11 GSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90 (612)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~ 90 (612)
...+....|+++||+..-. .+...+++|||++++||+++|.|-.|-|-+-|+.+|+|+.++
T Consensus 250 ~~~pg~~vL~V~~L~v~~~-----------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~-- 310 (501)
T COG3845 250 PSTPGEVVLEVEDLSVKDR-----------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP-- 310 (501)
T ss_pred CCCCCCeEEEEeeeEeecC-----------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--
Confidence 3444678899999986541 335689999999999999999999999999999999999866
Q ss_pred eeeEEEECCeeC----Chh-hhcccEEEEecCC---CcCCCCCHHHHHHHHHHcc-----CCCCCHHHHHHHHHHHHHHc
Q 046991 91 VSGKLLVNDRPM----DAE-HFRRISGYVTQDD---ALFPLLTVEETLMCSALLR-----LTAGRRKQAASRVRGLLKEL 157 (612)
Q Consensus 91 ~~G~I~~~g~~~----~~~-~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~-----~~~~~~~~~~~~v~~~l~~l 157 (612)
.+|+|.++|+++ +.. ..+..++|||+|. .+.+.+|+.||+.+...-+ .......+.++.+.++++++
T Consensus 311 ~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~f 390 (501)
T COG3845 311 ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEF 390 (501)
T ss_pred CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHc
Confidence 469999999996 333 3446799999985 5788999999998765321 11124566778899999999
Q ss_pred CCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 158 GLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 158 gL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
++... .+.++ +.||||.+||+-+||+|..+|++|+..+||.|||..+...|.+.|.+.++ .|+.|++++-|.
T Consensus 391 dVr~~~~~~~a------~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dL 463 (501)
T COG3845 391 DVRAPSPDAPA------RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDL 463 (501)
T ss_pred CccCCCCCcch------hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhH
Confidence 98733 23334 48999999999999999999999999999999999999999999999875 699999999999
Q ss_pred chHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 237 GFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 237 ~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+ |+++++|||.+|++|+++...++++.
T Consensus 464 D-Eil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 464 D-EILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred H-HHHHhhheeeeeeCCceecccccccC
Confidence 8 79999999999999999988887753
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=253.55 Aligned_cols=198 Identities=29% Similarity=0.370 Sum_probs=164.2
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...++++|++..-+ .++..|++.++.+++||-+.|.||||||||||+|+|+|+.+. .+|+|
T Consensus 390 ~~~i~~~nl~l~~p-----------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~--g~G~I 450 (604)
T COG4178 390 DHGITLENLSLRTP-----------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW--GSGRI 450 (604)
T ss_pred cceeEEeeeeEECC-----------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc--CCCce
Confidence 57899999997663 445899999999999999999999999999999999999987 46777
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
..- -...+-|+||.|.+... |.||.+.|... ..+-..+.+.++|.++||.+..++.=+.+..-+.
T Consensus 451 ~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~------~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~v 515 (604)
T COG4178 451 SMP--------ADSALLFLPQRPYLPQG-TLREALCYPNA------APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV 515 (604)
T ss_pred ecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCC------CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhh
Confidence 432 12347899999999887 99999986421 1113446788999999999887665443556679
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
||+|||||+++||.|+++|++++|||.|++||+.+...+++.+++-. .+.|||-+.|.+. +..+.++.+-+.
T Consensus 516 LS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred cChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999999999999999999999743 5799999999986 567777765554
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=6.5e-27 Score=230.60 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=126.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCceeeEEEECCeeCChhhhcccEEEEecCC-----CcCCCCC
Q 046991 55 VSCEARPGEITAIAGPSGAGKTTLLEILA----GKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDD-----ALFPLLT 125 (612)
Q Consensus 55 vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~----G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-----~l~~~lT 125 (612)
.++++.+| +++|+|||||||||||++|. |...+ ..|.+..+.+.+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567788 99999999999999999995 88765 4565542222223334456799999987 4455568
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHH------HHHHHHHhhCCCEEEE
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRR------ASIGVDLVHDPAVVLI 199 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqR------v~ia~~L~~~p~lllL 199 (612)
+.|++.+. +.. ++++.+ +..++ .||+||+|| +++|++++.+|+++++
T Consensus 93 ~~~~~~~~--------~~~----~~~~~~---------~~~~~------~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC--------HQG----ESNWPL---------LDMRG------RCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee--------chH----HHHHHH---------hcCcc------ccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88888642 111 222223 44444 899999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 200 DEPTSGLDSASAL-HVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 200 DEPtsgLD~~~~~-~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
||||++||+.++. .+.+.|++++++.|+|||++||+++ ..+.+|+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 9999999997654789999999986 4578999999964
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=9.5e-27 Score=231.08 Aligned_cols=180 Identities=20% Similarity=0.186 Sum_probs=127.8
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECC--eeCChhhhcccEEEEecCCCcCCCCCHHHH
Q 046991 53 KDVSCEAR-PGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND--RPMDAEHFRRISGYVTQDDALFPLLTVEET 129 (612)
Q Consensus 53 ~~vs~~i~-~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g--~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 129 (612)
++++|... +|++++|+||||||||||+++|++.+.. ...+....+. ..+.....+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 55666543 5899999999999999999999965421 1233333221 11122334556899998863311 22221
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh----------CCCEEEE
Q 046991 130 LMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH----------DPAVVLI 199 (612)
Q Consensus 130 l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~----------~p~lllL 199 (612)
. ..+.++..+.+ .++..++.+..++.++ .||||||||+++|++|+. +|++++|
T Consensus 95 ~---------gl~~~~~~~~~--~l~~g~l~~~l~~~~~------~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R---------GLDYDQFTRIV--LLPQGEFDRFLARPVS------TLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c---------CCCHHHHHHhh--hhhhcchHHHhcCCcc------ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 11222222211 2444456666677665 899999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
||||+|||+.++..+.+.|+++++ .++|||++||+++ .+...+|+++++++|-
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999999999999999965 4889999999998 4888999999999874
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=3.5e-26 Score=216.86 Aligned_cols=231 Identities=22% Similarity=0.316 Sum_probs=180.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR--KVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I 95 (612)
.|.++||+..+.. +.+...+++++|+++.+||+-+++|.||||||-..|+|+|..+.. .+.-..
T Consensus 3 LLDIrnL~IE~~T--------------sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~ 68 (330)
T COG4170 3 LLDIRNLTIEFKT--------------SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRM 68 (330)
T ss_pred cccccceEEEEec--------------CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhc
Confidence 4677888887742 336677999999999999999999999999999999999997542 123344
Q ss_pred EECCeeC---Chhhhc----ccEEEEecCCC--cCCCCCHHHHHHHHHHccCCCCC----HHHHHHHHHHHHHHcCCccc
Q 046991 96 LVNDRPM---DAEHFR----RISGYVTQDDA--LFPLLTVEETLMCSALLRLTAGR----RKQAASRVRGLLKELGLDHV 162 (612)
Q Consensus 96 ~~~g~~~---~~~~~~----~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~----~~~~~~~v~~~l~~lgL~~~ 162 (612)
.+++.++ ++++.| +.+++++|++. +.|.-+|...|.-..-....... -..+++++-++|.++|+.+.
T Consensus 69 Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdH 148 (330)
T COG4170 69 RFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDH 148 (330)
T ss_pred ccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccH
Confidence 5566543 344444 35679999984 56665665444322110100110 11245678899999999877
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.|-. ..++.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++..+|.++.+.+|+||++++||... +-+
T Consensus 149 kDIM---~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~ 224 (330)
T COG4170 149 KDIM---RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQ 224 (330)
T ss_pred HHHH---HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHH
Confidence 6643 345669999999999999999999999999999999999999999999999988889999999999985 999
Q ss_pred ccCeEEEEcCCeEEEecChhhHHH
Q 046991 243 LFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 243 ~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
.||++-+|.-|+-++.++.+++.+
T Consensus 225 W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 225 WADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred HhhheEEEEecccccccchhHHhc
Confidence 999999999999999999988753
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=3.2e-25 Score=268.39 Aligned_cols=136 Identities=22% Similarity=0.387 Sum_probs=112.7
Q ss_pred cCCCCCHHHHHHHHHHccCC-CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHh---hCC
Q 046991 120 LFPLLTVEETLMCSALLRLT-AGRRKQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLV---HDP 194 (612)
Q Consensus 120 l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~---~~p 194 (612)
.+...||.|+|.++..-... ....++..+++ ++++.+||.+. .++.+. +||||||||++||++|+ .+|
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~------tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS------SLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc------cCCHHHHHHHHHHHHHhhcCCCC
Confidence 45678999999876531110 11234455566 58899999876 677775 89999999999999998 699
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc------CCeEEEecChhhHH
Q 046991 195 AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS------NGFVVHNGTLNHLE 265 (612)
Q Consensus 195 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~ 265 (612)
++++|||||+|||+.++..+++.|+++++ .|.|||+++|+++. + +.+|++++|. +|+++..|+++++.
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999999975 58999999999973 6 8999999996 78999999998864
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=4.4e-26 Score=242.17 Aligned_cols=214 Identities=23% Similarity=0.350 Sum_probs=167.4
Q ss_pred CCCCCCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 6 RAPVSGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
+.|.+|. .+...+.++|+++.|+ ++-.++++++|-++.++-+|++||||+|||||||++.|.
T Consensus 378 ~f~~vg~-~p~pvi~~~nv~F~y~-----------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd 439 (614)
T KOG0927|consen 378 RFPEVGK-IPPPVIMVQNVSFGYS-----------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD 439 (614)
T ss_pred EcccccC-CCCCeEEEeccccCCC-----------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc
Confidence 3455555 4566788999998873 222799999999999999999999999999999999999
Q ss_pred CCCCceeeEEEECCeeCChhhhcccEEEEecC--CCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-
Q 046991 86 ISSRKVSGKLLVNDRPMDAEHFRRISGYVTQD--DALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV- 162 (612)
Q Consensus 86 ~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~--~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~- 162 (612)
+.| ..|.|.-.-+ ..+++..|+ +.+.-..++-|+++=.. +++...+.+..++.++||...
T Consensus 440 l~p--~~G~vs~~~H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~~-------~~~~~~e~~r~ilgrfgLtgd~ 502 (614)
T KOG0927|consen 440 LQP--TIGMVSRHSH--------NKLPRYNQHLAEQLDLDKSSLEFMMPKF-------PDEKELEEMRSILGRFGLTGDA 502 (614)
T ss_pred ccc--cccccccccc--------ccchhhhhhhHhhcCcchhHHHHHHHhc-------cccchHHHHHHHHHHhCCCccc
Confidence 987 6888754322 123344444 34444567778775321 122345678899999999844
Q ss_pred ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 163 ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 163 ~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
.+.+++ +||+|||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. .| +||.+|||... |-+
T Consensus 503 q~~p~~------~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~G-gvv~vSHDfrl-I~q 571 (614)
T KOG0927|consen 503 QVVPMS------QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PG-GVVLVSHDFRL-ISQ 571 (614)
T ss_pred cccchh------hcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CC-ceeeeechhhH-HHH
Confidence 455554 99999999999999999999999999999999999999999999875 24 89999999996 999
Q ss_pred ccCeEEEEcCCeE-EEecChhhHH
Q 046991 243 LFDRLVLLSNGFV-VHNGTLNHLE 265 (612)
Q Consensus 243 ~~D~v~lL~~G~i-v~~G~~~~~~ 265 (612)
.++++++..+|.+ .+.|+...-.
T Consensus 572 VaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 572 VAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred HHHHhHhhccCceeecCccHHHHH
Confidence 9999999988765 4667655433
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=6.6e-25 Score=255.90 Aligned_cols=125 Identities=26% Similarity=0.416 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHHhhCC---CEEEE
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDLVHDP---AVVLI 199 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 199 (612)
+||.|++.|...+. ...+..+.++.+||.. ..++.+. .||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~--------~i~~~l~~L~~vgL~~l~l~~~~~------tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP--------KIARKLQTLVDVGLGYIKLGQPAT------TLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch--------hhhHHHHHHHHCCCCcccccCCcc------cCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875431 1223467899999986 4677665 89999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
||||+|||+.++..+++.|+++.+ .|.|||+++|+++. + +.+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999975 58899999999973 4 689999999 789999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=9.4e-25 Score=232.10 Aligned_cols=224 Identities=21% Similarity=0.327 Sum_probs=153.2
Q ss_pred CCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 046991 11 GSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90 (612)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~ 90 (612)
.+.+..-.+.+.|+++++ .++.+++|+++++.+|+-+||+|+|||||||+|++|+|+..|.+
T Consensus 68 ~s~~~s~dvk~~sls~s~------------------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p 129 (614)
T KOG0927|consen 68 FSHPISRDVKIESLSLSF------------------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP 129 (614)
T ss_pred ccCcccccceeeeeeecc------------------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCC
Confidence 333444567777777666 67889999999999999999999999999999999999998755
Q ss_pred eeeEEEECCeeCChhh---hcc----------cEEEEecCCCcC-CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 046991 91 VSGKLLVNDRPMDAEH---FRR----------ISGYVTQDDALF-PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKE 156 (612)
Q Consensus 91 ~~G~I~~~g~~~~~~~---~~~----------~i~yv~Q~~~l~-~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~ 156 (612)
..=.++.-.+++.+.. ... ++.|...+-... +. --.+.+.-. ..+......+..+.++.++|..
T Consensus 130 ~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~~-~~r~~~~d~~~~~~k~~~il~g 207 (614)
T KOG0927|consen 130 EHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDD-KEKDELDEL-YERLDEMDNDTFEAKAAKILHG 207 (614)
T ss_pred cccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-hhhhHHHHH-HHHHHhhCchhHHHHHHHHHHh
Confidence 4444544444432211 111 111100000000 00 000000000 0010011223344566667777
Q ss_pred cCC-cccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccC
Q 046991 157 LGL-DHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQ 235 (612)
Q Consensus 157 lgL-~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~ 235 (612)
+|- ++..++.+. ++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.- .+ ++++++|.
T Consensus 208 lgf~~~m~~k~~~------~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~-~lVi~sh~ 278 (614)
T KOG0927|consen 208 LGFLSEMQDKKVK------DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RI-ILVIVSHS 278 (614)
T ss_pred cCCCHhHHHHHhh------ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--Cc-eEEEEecc
Confidence 664 456677765 899999999999999999999999999999999999999999988752 12 89999999
Q ss_pred CchHHHhccCeEEEEcCCe-EEEecChhhH
Q 046991 236 PGFRILELFDRLVLLSNGF-VVHNGTLNHL 264 (612)
Q Consensus 236 ~~~~i~~~~D~v~lL~~G~-iv~~G~~~~~ 264 (612)
-+. +-..|.+|+-|.+++ +.|.|+.+..
T Consensus 279 QDf-ln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 279 QDF-LNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred hhh-hhhHhhhhheecccceeeecCCHHHH
Confidence 875 889999999999999 5677877653
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=3.9e-24 Score=223.04 Aligned_cols=175 Identities=27% Similarity=0.369 Sum_probs=144.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETL 130 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 130 (612)
-|+-=.+++..||+++++||||-||||+.++|+|.++| ++|+ .. .-.++|=||--.--...||++.|
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHH
Confidence 45555678889999999999999999999999999987 6775 11 12478888875544567999988
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 046991 131 MCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSAS 210 (612)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 210 (612)
.-...-+.. ..-...++++-|+|++..++.+. +|||||.|||+||.+|..++++++||||++-||++.
T Consensus 423 ~~~~~~~~~------~s~~~~ei~~pl~l~~i~e~~v~------~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAFG------SSYFKTEIVKPLNLEDLLERPVD------ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhcc------cchhHHhhcCccchHHHHhcccc------cCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 754322111 11234578899999999999997 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 211 ALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 211 ~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+..+.+.+++.+.+.++|.+++.||.-. +--+.||+++.+
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999999889999999999974 556788888764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.7e-24 Score=210.92 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=125.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE--ECCeeC----ChhhhcccEEEEecCCCcCCCCC
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL--VNDRPM----DAEHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~--~~g~~~----~~~~~~~~i~yv~Q~~~l~~~lT 125 (612)
++++++++.+| +.+|+||||||||||+.+|..... |+.. ..|... ....-...+..++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--
Confidence 46788888888 889999999999999999975432 1111 112211 111123457778887665541
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHH----hhCCCEEEEeC
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDL----VHDPAVVLIDE 201 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L----~~~p~lllLDE 201 (612)
+ .....+++++++++. .+..+++++ .||+|||||++||++| +.+|++++|||
T Consensus 84 -------------~--~~~~~~~~~~~~l~~---~~~~~~~~~------~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 84 -------------P--LCVLSQDMARSFLTS---NKAAVRDVK------TLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred -------------c--CCHHHHHHHHHHhcc---ccccCCccc------ccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 0 111224567777877 566677765 8999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 202 PTSGLDSASALHVVTLLKSMVVN--QGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~--~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
||+|||+.++..+.+.|++++++ .+.|||+++|+++ ++.+. |+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 99999999999999999998654 3469999999998 46655 9999998764
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=9.6e-24 Score=245.80 Aligned_cols=125 Identities=27% Similarity=0.402 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHHhh---CCCEEE
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDLVH---DPAVVL 198 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~---~p~lll 198 (612)
.+||.|.+.|...+. ...+..++++.+||.. ..++.+. +|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~--------~i~~~l~~L~~~gL~~l~l~~~~~------tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP--------SISRKLQTLCDVGLGYIKLGQPAT------TLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc--------chhHHHHHHHHcCCCchhhcCccc------cCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888887765431 1124567899999975 3566665 899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhH
Q 046991 199 IDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHL 264 (612)
Q Consensus 199 LDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 264 (612)
|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++. + +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999975 58899999999973 5 679999999 79999999998764
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=5.4e-24 Score=216.14 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=119.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee--CCh--------hhhcccEEEEecCCCc-CCCCCHHH
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP--MDA--------EHFRRISGYVTQDDAL-FPLLTVEE 128 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~--~~~--------~~~~~~i~yv~Q~~~l-~~~lTv~E 128 (612)
.++ +++|+|||||||||||++|++...+ ..|++..++.. +.. ....-.+.|..|++.. .-..++++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 9999999999999999999999854 34665543321 000 1122234444443221 10111111
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccc---------ccC-------CCCCCccChHHHHHHHHHHHHhh
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSR---------IGG-------GSSNCGISGGERRRASIGVDLVH 192 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~-------~~~~~~LSgGerqRv~ia~~L~~ 192 (612)
... ..+..+ +....+.++++++.+|+....... +.. ...+..||||||||++||++++.
T Consensus 98 ~~~---~~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 98 GSS---SYRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI 172 (247)
T ss_pred Cce---EEEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH
Confidence 110 011111 112234567888999986332111 100 01125899999999999999987
Q ss_pred C----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 193 D----PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 193 ~----p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+ |+++++||||+|||+.++..+.+.|+++++ .|.+||++||+++ +.+.+|++++|.+
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 5 899999999999999999999999999975 4889999999964 6789999999964
No 392
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.89 E-value=1.8e-22 Score=191.28 Aligned_cols=218 Identities=26% Similarity=0.325 Sum_probs=169.2
Q ss_pred CCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 046991 11 GSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRK 90 (612)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~ 90 (612)
++......++++++.|+|+ ...+++-|+|+.++.|.-..++|.||||||||||+|+|.--.
T Consensus 6 ~~~~~~~aievsgl~f~y~-----------------~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv-- 66 (291)
T KOG2355|consen 6 AEAVSDFAIEVSGLQFKYK-----------------VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV-- 66 (291)
T ss_pred hhhcccceEEEeccEEecc-----------------cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc--
Confidence 3445677899999999995 334799999999999999999999999999999999998654
Q ss_pred eeeEEEECCeeCCh--------------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 046991 91 VSGKLLVNDRPMDA--------------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKE 156 (612)
Q Consensus 91 ~~G~I~~~g~~~~~--------------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~ 156 (612)
..|.|.++|++.-. .+|.+..+.-- +..+-..+++.+.+ |+.. + .+. +|-+++++.
T Consensus 67 ~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~----g-~dp---~Rre~LI~i 136 (291)
T KOG2355|consen 67 GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG----G-DDP---ERREKLIDI 136 (291)
T ss_pred cCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc----C-CCh---hHhhhhhhh
Confidence 35899999976411 12333333322 22334456775544 4321 1 111 455677777
Q ss_pred cCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 157 LGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 157 lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
+.++-. -+. +.+|-|||+||.|++.|++.=++|+|||-|-.||..++..+++.+++-+++.|.||+..||-.
T Consensus 137 LDIdl~--WRm------HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 137 LDIDLR--WRM------HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred eeccce--EEE------eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 777521 222 268999999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHhccCeEEEEcCCeEEEecChhhHHH
Q 046991 237 GFRILELFDRLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 237 ~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 266 (612)
+ -+.....+++.|++|+++..-+.+++.+
T Consensus 209 D-GLe~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 209 D-GLETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred c-chhhcchhEEEecCCeeeeccccchhhh
Confidence 8 4888999999999999998666655544
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=215.10 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=163.6
Q ss_pred CCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCce
Q 046991 12 SRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKV 91 (612)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~ 91 (612)
..+....+++++++..-| .++..+++|+|++|++|+-+.|.||||||||+|+|+|+|+.+. .
T Consensus 427 ~~~~Dn~i~~e~v~l~tP----------------t~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~--~ 488 (659)
T KOG0060|consen 427 AEPADNAIEFEEVSLSTP----------------TNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS--T 488 (659)
T ss_pred cccccceEEeeeeeecCC----------------CCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc--C
Confidence 334567899999987653 1356788999999999999999999999999999999999975 6
Q ss_pred eeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC--
Q 046991 92 SGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG-- 169 (612)
Q Consensus 92 ~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-- 169 (612)
+|++.--...- .+.+-|+||.|.+.-. |.||.+.|...-..+ .++-..++++.+.|+.++|.|..++.=|=
T Consensus 489 ~G~l~k~~~~~-----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~-~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~ 561 (659)
T KOG0060|consen 489 GGKLTKPTDGG-----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM-DSKSASDEDILRILENVQLGHLLEREGGLDQ 561 (659)
T ss_pred CCeEEecccCC-----CCceEEecCCCCcccc-chhheeeccCccccc-cccCCCHHHHHHHHHHhhhhhHHHHhCCCCc
Confidence 88886433221 1458899999988766 999999886321111 11122346678888888888765442110
Q ss_pred ---CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 170 ---GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 170 ---~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
-++...||+||+||++.||.+.++|++-+|||.||++|......+.+.+++ .|.|.|-+.|..+ +.+.-|.
T Consensus 562 ~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~ 635 (659)
T KOG0060|consen 562 QVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDY 635 (659)
T ss_pred hhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhE
Confidence 123458999999999999999999999999999999999999998887765 4899999999986 5777788
Q ss_pred EEEEcC
Q 046991 247 LVLLSN 252 (612)
Q Consensus 247 v~lL~~ 252 (612)
++-|+.
T Consensus 636 ~L~~~g 641 (659)
T KOG0060|consen 636 VLRMDG 641 (659)
T ss_pred EEEecC
Confidence 888864
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.7e-22 Score=213.95 Aligned_cols=208 Identities=20% Similarity=0.278 Sum_probs=147.1
Q ss_pred CCCCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 046991 10 SGSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR 89 (612)
Q Consensus 10 ~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~ 89 (612)
+......-.|...|.+..| +.+.+|++-++++..|.-++|+|+||+|||||||+|+.
T Consensus 72 ~~~~~~~~Di~~~~fdLa~------------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~----- 128 (582)
T KOG0062|consen 72 TSGEGKSKDIHIDNFDLAY------------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN----- 128 (582)
T ss_pred CCccccccceeeeeeeeee------------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----
Confidence 3333345677777777776 78899999999999999999999999999999999987
Q ss_pred ceeeEEEECCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHH-HHHccCCCCCHHHHHHHHHHHHHHcCCcccc-ccc
Q 046991 90 KVSGKLLVNDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMC-SALLRLTAGRRKQAASRVRGLLKELGLDHVA-SSR 166 (612)
Q Consensus 90 ~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~-~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ 166 (612)
|.|. +-+.. ++.+ -.+++-.. .+..+ |.++.+.. -..+. ...+..+...++|..+|.++.. ...
T Consensus 129 ---~~v~--~f~ve-qE~~--g~~t~~~~~~l~~D-~~~~dfl~~e~~l~----~~~~l~ei~~~~L~glGFt~emq~~p 195 (582)
T KOG0062|consen 129 ---GQVS--GFHVE-QEVR--GDDTEALQSVLESD-TERLDFLAEEKELL----AGLTLEEIYDKILAGLGFTPEMQLQP 195 (582)
T ss_pred ---cCcC--ccCch-hhee--ccchHHHhhhhhcc-HHHHHHHHhhhhhh----ccchHHHHHHHHHHhCCCCHHHHhcc
Confidence 2221 11211 1111 12332222 22233 33333321 11110 0112233444589999997654 444
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ .||||-|-|+++||||..+|++|+|||||+.||..+..-+.+.|+.+ ..|+|+++||-+. +-..|..
T Consensus 196 t~------slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~td 264 (582)
T KOG0062|consen 196 TK------SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTD 264 (582)
T ss_pred cc------ccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHH
Confidence 44 89999999999999999999999999999999999999999999874 3799999999876 7778888
Q ss_pred EEEEcCCeE-EEecChhhH
Q 046991 247 LVLLSNGFV-VHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~i-v~~G~~~~~ 264 (612)
|+-+++-++ .|.|+.++.
T Consensus 265 IIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 265 IIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHHHhhhhhhhhcCcHHHH
Confidence 888877666 467876654
No 395
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.87 E-value=1.9e-23 Score=204.58 Aligned_cols=208 Identities=25% Similarity=0.402 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHH
Q 046991 334 QEVLILGQRFCYNIFRTNQLF-ATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFSLTFLLSSTTE-GLPIFLQ 411 (612)
Q Consensus 334 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~-~~~~~~~ 411 (612)
+|++.+++|+++..+|||... ..+++..++.++++|.+|.++++ ...+. ++.|++++.+...++.... .......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN--SQDGF-NRPGLIFGSIIFSFFSSISGSSISFER 77 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc--ccccc-ccceeeehhhHHhhhhhcccchhhhhh
Confidence 599999999999999999888 99999999999999999999885 44455 6678777777766654443 3477889
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046991 412 ERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALV 491 (612)
Q Consensus 412 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~ 491 (612)
||..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +|+.+++.+.+..+++.++|.++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~ 155 (210)
T PF01061_consen 78 ERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALF 155 (210)
T ss_pred hccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccch
Confidence 999999999999999999999999999999999999999999999999877 778888888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHh
Q 046991 492 PNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEY 546 (612)
Q Consensus 492 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef 546 (612)
++...+..+.+.+..+++++||.+.|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 156 PSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999876
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.3e-21 Score=202.41 Aligned_cols=192 Identities=27% Similarity=0.335 Sum_probs=151.7
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|-++|++|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.| ..|+.
T Consensus 584 PPvLGlH~VtFgy~-----------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~ 644 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP-----------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGEL 644 (807)
T ss_pred CCeeecccccccCC-----------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchh
Confidence 33566677776663 668899999999999999999999999999999999999987 56765
Q ss_pred EECCeeCChhhhcccEEEEecCC--CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDD--ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
. +..|-+||+..|+. .+-..-|.-|.|.-... + +. +.+...|-.+||...++|.- .
T Consensus 645 R--------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN--l---py----q~ARK~LG~fGL~sHAHTik-----i 702 (807)
T KOG0066|consen 645 R--------KNHRLRIGWFDQHANEALNGEETPVEYLQRKFN--L---PY----QEARKQLGTFGLASHAHTIK-----I 702 (807)
T ss_pred h--------ccceeeeechhhhhHHhhccccCHHHHHHHhcC--C---Ch----HHHHHHhhhhhhhhccceEe-----e
Confidence 3 23345689988874 56666788888753321 2 22 33567788999987777643 2
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+.||||||-||++|.--+..|+||||||||++||..+...+.+.+.+. +-.||+++||.+. +.+.--.++++.+-
T Consensus 703 kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 703 KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccce-eeecCceEEEEccC
Confidence 489999999999999999999999999999999999999999999875 2379999999885 66665567777653
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.8e-21 Score=204.80 Aligned_cols=209 Identities=23% Similarity=0.343 Sum_probs=162.3
Q ss_pred CCCCCcceEEEeeeEEEEecccccccceecccccccCcc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 046991 11 GSRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPK-FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR 89 (612)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~ 89 (612)
++-..+..+++.++++.+. .+. +++.+++..++.-+-.+++|+||+||||++|++.|-..|
T Consensus 355 ~e~~~~p~l~i~~V~f~y~-----------------p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~- 416 (582)
T KOG0062|consen 355 GEVLSPPNLRISYVAFEYT-----------------PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP- 416 (582)
T ss_pred CCcCCCCeeEEEeeeccCC-----------------CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-
Confidence 3444566788888887763 122 689999999999999999999999999999999998866
Q ss_pred ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-ccccccc
Q 046991 90 KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIG 168 (612)
Q Consensus 90 ~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 168 (612)
.+|-+.++ -|.+++|-.|...-+-.+.|-+.- +..+.+ |+. .++.+++.+..+||+. .+...+.
T Consensus 417 -~rgi~~~~--------~r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-pG~----~~ee~r~hl~~~Gl~g~la~~si~ 481 (582)
T KOG0062|consen 417 -TRGIVGRH--------PRLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-PGK----TEEEIRRHLGSFGLSGELALQSIA 481 (582)
T ss_pred -ccceeeec--------ccceecchhHhhhhHHHHHhHHHH-HHHHhC-CCC----CHHHHHHHHHhcCCCchhhhcccc
Confidence 57766543 345688988875544444454332 223332 232 3355778899999974 3444454
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+||||||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +| .||++|||.+. +...|+.++
T Consensus 482 ------~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G-GVv~VSHd~~f-i~~~c~E~W 550 (582)
T KOG0062|consen 482 ------SLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG-GVVLVSHDEEF-ISSLCKELW 550 (582)
T ss_pred ------ccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC-cEEEEECcHHH-HhhcCceeE
Confidence 89999999999999999999999999999999999999999999876 24 79999999986 889999999
Q ss_pred EEcCCeEE-EecChhh
Q 046991 249 LLSNGFVV-HNGTLNH 263 (612)
Q Consensus 249 lL~~G~iv-~~G~~~~ 263 (612)
+.++|++. ..|...+
T Consensus 551 vve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 551 VVEDGKVTPIEGGIDK 566 (582)
T ss_pred EEcCCcEEeeeccHHH
Confidence 99999986 4455433
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=4.1e-21 Score=190.51 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=68.4
Q ss_pred CccChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-cEEEEEccCCchHHHhccC--e
Q 046991 174 CGISGGERRRASIGVDL----VHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQG-KTIILTIHQPGFRILELFD--R 246 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g-~tii~~~H~~~~~i~~~~D--~ 246 (612)
.+||||||||+.++.+| +.+|+++++||||+|||+.++..+.+.|++++++.| .|+|++||++.. ..+.+| +
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~ 203 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMT 203 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceE
Confidence 38999999998877554 589999999999999999999999999999976524 589999999873 667776 7
Q ss_pred EEEEcCCe
Q 046991 247 LVLLSNGF 254 (612)
Q Consensus 247 v~lL~~G~ 254 (612)
+++|++|+
T Consensus 204 v~~l~~g~ 211 (213)
T cd03277 204 VLCVYNGP 211 (213)
T ss_pred EEEEecCc
Confidence 88888886
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=1.9e-21 Score=191.24 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=109.7
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH--------cCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcC
Q 046991 51 ILKDVSCEARPGE-ITAIAGPSGAGKTTLLEILA--------GKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALF 121 (612)
Q Consensus 51 iL~~vs~~i~~Ge-~~aIlG~nGsGKTTLL~~L~--------G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 121 (612)
-.-++|+++.+|+ +++|.||||||||||||+|+ |..-| ... ...++|..|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~--------------~~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAE--------------GSSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccc--------------cccCcCccEEEE--
Confidence 3458999999995 89999999999999999998 43222 000 001233333211
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 122 PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
.++..+..+..++ .+|+||||++.++++ +.+|+++++||
T Consensus 78 ----------------------------------~lg~~~~l~~~~s------~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 ----------------------------------DIGDEQSIEQSLS------TFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred ----------------------------------ecCchhhhhcCcc------hHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 1111112222233 799999999999987 48999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 202 PTSGLDSASALHVV-TLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 202 PtsgLD~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
|++|||+..+..+. ..++++.+ .|.++|++||+. ++.+++|++..|++|++.+++
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999996 46777754 588999999984 578999999999999998874
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=2.7e-21 Score=201.90 Aligned_cols=170 Identities=29% Similarity=0.477 Sum_probs=128.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hh---------hcc------cEEEEecC---
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EH---------FRR------ISGYVTQD--- 117 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~---------~~~------~i~yv~Q~--- 117 (612)
.++|++++|+||||-||||-+|+|+|.+.|. =|+ .++.|-.. +. +++ ++..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 5799999999999999999999999999873 222 12211100 00 110 11112222
Q ss_pred -CCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCE
Q 046991 118 -DALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAV 196 (612)
Q Consensus 118 -~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~l 196 (612)
|..+.. ||.|.|.- .+.+.+.+++++.++|.+..|+.+. +|||||.||++||.++++++++
T Consensus 173 iPk~~KG-~v~elLk~-----------~de~g~~devve~l~L~nvl~r~v~------~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 173 IPKVVKG-KVGELLKK-----------VDERGKFDEVVERLGLENVLDRDVS------ELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHhcc-hHHHHHHh-----------hhhcCcHHHHHHHhcchhhhhhhhh------hcCchHHHHHHHHHHHhccCCE
Confidence 233333 66665531 1222457899999999999999997 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 197 VLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 197 llLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+++|||||-||...+....+.++++++. +++||++.||+.. +--++|-|.++..
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEec
Confidence 9999999999999999999999999865 8999999999863 4557888888863
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.82 E-value=6.2e-20 Score=189.67 Aligned_cols=187 Identities=30% Similarity=0.468 Sum_probs=145.3
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------CceeeEEEECCeeCChhhhcccEEEEecCC
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS------RKVSGKLLVNDRPMDAEHFRRISGYVTQDD 118 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~------~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 118 (612)
......+|+|+|++++||++++|.|+|||||||||++|.|.... .+++|.|.+--.. ..+.+|-+.
T Consensus 392 r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~ 463 (593)
T COG2401 392 RVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEY 463 (593)
T ss_pred eeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccc
Confidence 34567799999999999999999999999999999999998642 1456766542111 234455443
Q ss_pred -CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc--cccccCCCCCCccChHHHHHHHHHHHHhhCCC
Q 046991 119 -ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA--SSRIGGGSSNCGISGGERRRASIGVDLVHDPA 195 (612)
Q Consensus 119 -~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ 195 (612)
.-+...|+.|++.- .+ -+...+.++|++.||++.. ..+. +.||.|||.|+.||.++...|.
T Consensus 464 Ep~f~~~tilehl~s-----~t-----GD~~~AveILnraGlsDAvlyRr~f------~ELStGQKeR~KLAkllaerpn 527 (593)
T COG2401 464 EPEFGEVTILEHLRS-----KT-----GDLNAAVEILNRAGLSDAVLYRRKF------SELSTGQKERAKLAKLLAERPN 527 (593)
T ss_pred ccccCchhHHHHHhh-----cc-----CchhHHHHHHHhhccchhhhhhccH------hhcCcchHHHHHHHHHHhcCCC
Confidence 22445677777641 11 1223467899999997642 3333 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc-cCeEEEEcCCeEE
Q 046991 196 VVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL-FDRLVLLSNGFVV 256 (612)
Q Consensus 196 lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~D~v~lL~~G~iv 256 (612)
+++.||--+.||+.++..+.+-+.+++++.|.|.+++||.|+. +-.+ -|+++++.-|++.
T Consensus 528 ~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 528 VLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred cEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 9999999999999999999999999999999999999999974 5555 6899888766654
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.5e-19 Score=183.02 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=68.0
Q ss_pred ccChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 175 GISGGERRRASIGVDLVH----DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.|||||+||+++|++++. +|+++++||||++||+..+..+.+.|+++++ +.|+|+++|++. +.+.+|++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 599999999999987654 9999999999999999999999999999853 689999999986 56899999999
Q ss_pred cCC
Q 046991 251 SNG 253 (612)
Q Consensus 251 ~~G 253 (612)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 876
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=6.2e-20 Score=183.15 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=117.2
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEE-EEecCCCcCCCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISG-YVTQDDALFPLLT 125 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lT 125 (612)
..+.+.+|++++..+|++++|.||||+|||||+++++-. .+..++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~--- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP--- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe---
Confidence 345789999999999999999999999999999999821 1112233 5555432111
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHH--hhCCCEEEEeCC-
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDL--VHDPAVVLIDEP- 202 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L--~~~p~lllLDEP- 202 (612)
.++++++.+|+++.. . +++|.|+++++.+++++ +.+|++++||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~---~------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~ 119 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ---L------KGVSTFMAEMLETAAILKSATENSLIIIDELG 119 (222)
T ss_pred -----------------------ccceeEeeeccccch---h------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 123445556665432 2 27999999999999999 899999999999
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecC
Q 046991 203 --TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260 (612)
Q Consensus 203 --tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 260 (612)
|++||+...... .++.+.++.|.++|++||+ . ++.+++|++..+++|++...++
T Consensus 120 ~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~-~-el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 120 RGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF-H-ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech-H-HHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3355544457899999997 3 6889999999999999987764
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=5.1e-19 Score=170.65 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=68.0
Q ss_pred cChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 176 ISGGERRRASIGVDLV----HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 176 LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
||||||||+++|++|+ .+|+++++|||+++||+..+..+.+.|++++++ |.|+|+++|+++ ..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~--~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKE--MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHhhCCeEEEEE
Confidence 8999999999999996 699999999999999999999999999998754 789999999985 457899999997
Q ss_pred C
Q 046991 252 N 252 (612)
Q Consensus 252 ~ 252 (612)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=8.5e-19 Score=213.07 Aligned_cols=196 Identities=23% Similarity=0.353 Sum_probs=144.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHH-HHH---------cCCCCCceeeEEEECCeeCCh-------------hhh
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLE-ILA---------GKISSRKVSGKLLVNDRPMDA-------------EHF 107 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~-~L~---------G~~~~~~~~G~I~~~g~~~~~-------------~~~ 107 (612)
=|+||+.+|+-|.+++|.|.||||||||++ +|. |.. ...--|.+|-.|+.. +.+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~---~~~~vi~vdQspIgrt~RS~paTY~g~fd~I 1581 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS---VFSEIIFLDSHPQISSQRSDISTYFDIAPSL 1581 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc---ccCcEEEEeCCCCCCCCCCchhhhhhhHHHH
Confidence 389999999999999999999999999996 442 221 123346666555420 111
Q ss_pred ccc-------------------------------EEEEecCCCcC--------------------------------CCC
Q 046991 108 RRI-------------------------------SGYVTQDDALF--------------------------------PLL 124 (612)
Q Consensus 108 ~~~-------------------------------i~yv~Q~~~l~--------------------------------~~l 124 (612)
|+. -|++.=+-.++ -+|
T Consensus 1582 R~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~m 1661 (1809)
T PRK00635 1582 RNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQT 1661 (1809)
T ss_pred HHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcC
Confidence 110 12221111111 246
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCccChHHHHHHHHHHHHhhC---CCEEEEe
Q 046991 125 TVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA-SSRIGGGSSNCGISGGERRRASIGVDLVHD---PAVVLID 200 (612)
Q Consensus 125 Tv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~~LSgGerqRv~ia~~L~~~---p~lllLD 200 (612)
||.|.+.|... ..+..+.-+.|.++||.... .+.. .+|||||.||+-+|.+|..+ +.+++||
T Consensus 1662 tv~ea~~~F~~--------~~~i~~~L~~L~~vGLgYl~LGq~~------~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1662 PIEEVAETFPF--------LKKIQKPLQALIDNGLGYLPLGQNL------SSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred CHHHHHHHhhc--------cHHHHHHHHHHHHcCCCeeeCCCcC------CccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 77777776531 12345567889999997552 3333 38999999999999999875 7899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc------CCeEEEecChhhHHH
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS------NGFVVHNGTLNHLEE 266 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 266 (612)
|||+||++.....+++.|+++.. .|.|||++.|++. +.+.||.|+=|- .|+|++.|+|+++.+
T Consensus 1728 EPt~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1728 EIATSLDNQQKSALLVQLRTLVS-LGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999975 5889999999985 677899999983 479999999998764
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1e-19 Score=178.62 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=108.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccch
Confidence 356788887665 79999999999999999999998652 11244444221 3667778899999999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD 207 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 207 (612)
|++.++... ...+ .+++.++++.+++ .+|+++++|||++|+|
T Consensus 78 d~l~~~~s~-----~~~e-~~~~~~iL~~~~~--------------------------------~~p~llllDEp~~glD 119 (199)
T cd03283 78 DDLRDGISY-----FYAE-LRRLKEIVEKAKK--------------------------------GEPVLFLLDEIFKGTN 119 (199)
T ss_pred hccccccCh-----HHHH-HHHHHHHHHhccC--------------------------------CCCeEEEEecccCCCC
Confidence 999764311 1222 3567777776652 5899999999999999
Q ss_pred HHHHHHHH-HHHHHHHHcCCcEEEEEccCCchHHHhc--cCeEEEE
Q 046991 208 SASALHVV-TLLKSMVVNQGKTIILTIHQPGFRILEL--FDRLVLL 250 (612)
Q Consensus 208 ~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~~~i~~~--~D~v~lL 250 (612)
+.++..+. .+++++.+ .|.|+|++||+++. +... .+++-.+
T Consensus 120 ~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 120 SRERQAASAAVLKFLKN-KNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 99998875 47888864 58999999999874 4433 3445443
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=3.1e-18 Score=189.97 Aligned_cols=128 Identities=27% Similarity=0.453 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCC---CEEEE
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDP---AVVLI 199 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 199 (612)
.|||.|...|+... ....+.-+.|..+||.-.. .| ....+|||||.||+-+|.+|.... .+++|
T Consensus 783 ~MTveEA~~FF~~~--------p~I~rkLqtL~dVGLgYi~---LG--QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI--------PKIARKLQTLVDVGLGYIK---LG--QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc--------hHHHHHHHHHHHcCcceEe---cC--CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 46888888776421 2244556778889997432 22 223489999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHHH
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLEE 266 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 266 (612)
||||+||-.....++++.|.++.. .|.|||++.|+++ +.+.+|.|+=| ..|+++..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999985 5889999999985 78999999998 3579999999999864
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.79 E-value=3.1e-19 Score=189.07 Aligned_cols=178 Identities=22% Similarity=0.358 Sum_probs=134.4
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
....+...++|.+++|--+.|.||||||||+|+|+|+|+.+. ..|...+ + .+..+-|+||.|.+-. -|.
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--y~g~L~~------P--~~~~mFYIPQRPYms~-gtl 561 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--YNGLLSI------P--RPNNIFYIPQRPYMSG-GTL 561 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--cCCeeec------C--CCcceEeccCCCccCc-Ccc
Confidence 345588999999999999999999999999999999999965 3444321 1 1234899999998763 377
Q ss_pred HHHHHHHHHccCCCCCHHH------HHHHHHHHHHHcCCcccccccccC---CCCCCccChHHHHHHHHHHHHhhCCCEE
Q 046991 127 EETLMCSALLRLTAGRRKQ------AASRVRGLLKELGLDHVASSRIGG---GSSNCGISGGERRRASIGVDLVHDPAVV 197 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~------~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~~LSgGerqRv~ia~~L~~~p~ll 197 (612)
+|.+.|.- +.++ .++..+.+|+.+.|++...+-.|= ..+.-.||||||||+++||.+-++|+.-
T Consensus 562 RDQIIYPd-------S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkya 634 (728)
T KOG0064|consen 562 RDQIIYPD-------SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYA 634 (728)
T ss_pred cceeecCC-------cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchh
Confidence 77776531 1111 123466778888887766554320 2234479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 198 LIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 198 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+|||.||+..+.....+.+..++ .|.+.|-++|+|+ +.++-.+++
T Consensus 635 lLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 635 LLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred hhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc--HHHHHHHHH
Confidence 99999999999888888876654 5899999999997 455544433
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=6.3e-19 Score=167.51 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=68.4
Q ss_pred ccChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 175 GISGGERRRASIGVDLVH----DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++ +.++|++||+++ +.+.+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPE--LAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEE
Confidence 599999999999999987 78999999999999999999999999998765 889999999986 56789999998
Q ss_pred cC
Q 046991 251 SN 252 (612)
Q Consensus 251 ~~ 252 (612)
..
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 64
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=7.3e-18 Score=197.22 Aligned_cols=135 Identities=27% Similarity=0.418 Sum_probs=111.3
Q ss_pred CCCCCHHHHHHHHHHccCCCCC-------HHHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhh
Q 046991 121 FPLLTVEETLMCSALLRLTAGR-------RKQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVH 192 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~-------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~ 192 (612)
+..+||.|.+.|.-.+..+... -++..++++ .|+.+||.+. .|+.+. +|||||||||.||++|..
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~------~LSgGE~QRv~LA~aL~~ 506 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG------TLSGGEAQRIRLATQIGS 506 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh------hCCHHHHHHHHHHHHHhh
Confidence 4568999999985544322110 013344554 7889999876 688886 899999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhH
Q 046991 193 DP--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHL 264 (612)
Q Consensus 193 ~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 264 (612)
+| ++++|||||+|||+.++..+.++|+++++ .|.|||+++|+++ ++ ..||++++| ++|++++.|+++++
T Consensus 507 ~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 507 GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 97 99999999999999999999999999964 5899999999997 35 469999999 99999999999886
Q ss_pred H
Q 046991 265 E 265 (612)
Q Consensus 265 ~ 265 (612)
.
T Consensus 584 ~ 584 (943)
T PRK00349 584 M 584 (943)
T ss_pred h
Confidence 3
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.5e-17 Score=194.30 Aligned_cols=135 Identities=27% Similarity=0.424 Sum_probs=108.5
Q ss_pred CCCCCHHHHHHHHHHccCCCCCH-------HHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhh
Q 046991 121 FPLLTVEETLMCSALLRLTAGRR-------KQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVH 192 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~-------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~ 192 (612)
+-.|||.|.+.|...+....... ++..+++ +.+..+||... .++.+. +|||||+||+.||++|+.
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~------tLSGGE~QRv~LA~aL~~ 504 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAG------TLSGGEAQRIRLATQIGS 504 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcC------cCCHHHHHHHHHHHHHhh
Confidence 34689999998876653321101 1112222 34778888765 577765 899999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhH
Q 046991 193 DP--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHL 264 (612)
Q Consensus 193 ~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 264 (612)
+| ++++|||||+|||+.++..+++.|+++++ .|.|||+++|+++ .+ ..||++++| ++|++++.|+++++
T Consensus 505 ~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 505 GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 86 89999999999999999999999999975 5899999999986 35 599999999 89999999999886
Q ss_pred H
Q 046991 265 E 265 (612)
Q Consensus 265 ~ 265 (612)
.
T Consensus 582 ~ 582 (924)
T TIGR00630 582 L 582 (924)
T ss_pred h
Confidence 3
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=2.7e-18 Score=169.05 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=103.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCS 133 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 133 (612)
..++++.+|++++|.|||||||||||++|++..-. ...|.. .. ..+..+++..|. +..++..+
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~--~~~~~i~~~dqi---~~~~~~~d----- 83 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VP--AESASIPLVDRI---FTRIGAED----- 83 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------cc--ccccccCCcCEE---EEEecCcc-----
Confidence 34556668999999999999999999999954311 012211 10 011123332221 11111111
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 046991 134 ALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALH 213 (612)
Q Consensus 134 ~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 213 (612)
..+..++ .++++++ |++.+.+++.+|+++++||||+|+|+.....
T Consensus 84 ----------------------------~i~~~~s------~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 84 ----------------------------SISDGRS------TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ----------------------------cccCCce------eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 1111122 4665555 5777788899999999999999999999888
Q ss_pred HHH-HHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhh
Q 046991 214 VVT-LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 214 i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 263 (612)
+.. +++.+. +.+.++|++||++ ++.+.+|++..+..|++...++.++
T Consensus 129 l~~~ll~~l~-~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 129 IAYAVLEHLL-EKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHH-hcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 865 466665 4588999999996 4678899999999999988876544
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.7e-18 Score=179.48 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=153.9
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
..+.|.++|.+.+. .++.++.|-|+.|-.|..++++||||-||||||+-|+.+--.-+..=+
T Consensus 261 na~DIKiEnF~ISA------------------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID 322 (807)
T KOG0066|consen 261 NAMDIKIENFDISA------------------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID 322 (807)
T ss_pred hcccceeeeeeeec------------------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc
Confidence 34466777666554 567789999999999999999999999999999999988422222344
Q ss_pred EEECCeeCCh----------hhhcccEEEEecCC-----CcCCCCCHHHHHHH-HHHccCCCCCHHHHHHHHHHHHHHcC
Q 046991 95 LLVNDRPMDA----------EHFRRISGYVTQDD-----ALFPLLTVEETLMC-SALLRLTAGRRKQAASRVRGLLKELG 158 (612)
Q Consensus 95 I~~~g~~~~~----------~~~~~~i~yv~Q~~-----~l~~~lTv~E~l~~-~~~l~~~~~~~~~~~~~v~~~l~~lg 158 (612)
|++..+.+-. +.-.++...+..++ .--...|+.|-+.- +..++..+ ....+.++..+|.-||
T Consensus 323 vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG--A~sAEarARRILAGLG 400 (807)
T KOG0066|consen 323 VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG--ADSAEARARRILAGLG 400 (807)
T ss_pred eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc--cccchhHHHHHHhhcC
Confidence 5554443210 00011112221111 11244577777643 23344322 2234467788999999
Q ss_pred CcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCch
Q 046991 159 LDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 159 L~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
.++....++- ...|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-+.
T Consensus 401 FskEMQ~rPt-----~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQgF 471 (807)
T KOG0066|consen 401 FSKEMQERPT-----TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQGF 471 (807)
T ss_pred CChhHhcCCc-----cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEecccch
Confidence 9865433332 2799999999999999999999999999999999999888888888763 699999999986
Q ss_pred HHHhccCeEEEEcCCeEE-EecCh
Q 046991 239 RILELFDRLVLLSNGFVV-HNGTL 261 (612)
Q Consensus 239 ~i~~~~D~v~lL~~G~iv-~~G~~ 261 (612)
+-..|..|+-|++-++- |.|..
T Consensus 472 -LD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 472 -LDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred -HHHHHHHHhhhhhhhhhhhcchH
Confidence 88899999999887764 44554
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.2e-16 Score=164.53 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=62.5
Q ss_pred CccChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 174 CGISGGERRRASIGVDLV---------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
.-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.++++ + .+++++|+.. ++.+++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCch-hccchh
Confidence 358999999999999985 799999999999999999999999999864 2 3455555544 366666
Q ss_pred ---CeEEEEcCCeE
Q 046991 245 ---DRLVLLSNGFV 255 (612)
Q Consensus 245 ---D~v~lL~~G~i 255 (612)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.71 E-value=2.1e-17 Score=162.65 Aligned_cols=138 Identities=22% Similarity=0.340 Sum_probs=100.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
.++.+.+|++++.++|++++|+||||+|||||++++++..- +.+.-.|| +...+.+++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPI 71 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccC
Confidence 44679999999999999999999999999999999998741 01111233 333455566
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
.|++.. .++..+..++..+ .+|+|++|+ +.+.+++.+|+++++|||++|+
T Consensus 72 ~d~I~~-----------------------~~~~~d~~~~~~S------~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLS-----------------------RLSNDDSMERNLS------TFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeE-----------------------ecCCccccchhhh------HHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 666632 1222222223333 789998865 5667788999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHHcCCcEEEEEccCCc
Q 046991 207 DSASALHVV-TLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 207 D~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~ 237 (612)
|+.....+. ..++.+.+ .|.++|++||+.+
T Consensus 122 ~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~ 152 (204)
T cd03282 122 SSADGFAISLAILECLIK-KESTVFFATHFRD 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 998866654 46777764 4899999999986
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.64 E-value=1.5e-15 Score=157.85 Aligned_cols=178 Identities=27% Similarity=0.393 Sum_probs=137.3
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCC
Q 046991 49 KFILKDVSCEARPG-----EITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPL 123 (612)
Q Consensus 49 ~~iL~~vs~~i~~G-----e~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 123 (612)
+.-+.+..+.|+.| |++..+|.||.|||||+++++|+++|. ..|+|-. -.++|=||...-=..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~-----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPV-----------LNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-ccCcccc-----------cceeccccccCcccc
Confidence 44556666667666 688999999999999999999999873 3344422 135666676443334
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPT 203 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPt 203 (612)
-||++.+.-- .+ +.-....-+.++++-|.+++..|+.|. +|||||+|||++|..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~k--Ir----~ay~~pqF~~dvmkpL~ie~i~dqevq------~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTK--IR----DAYMHPQFVNDVMKPLQIENIIDQEVQ------GLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHH--hH----hhhcCHHHHHhhhhhhhHHHHHhHHhh------cCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5888877521 11 111223457889999999999998886 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 204 SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 204 sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+-||++.+..--+.+++.--+.++|-.++.||.-. ..-++||+++-.
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 99999999999999998876678899999999754 334789887653
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=1.1e-15 Score=151.87 Aligned_cols=158 Identities=22% Similarity=0.219 Sum_probs=107.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
.+.+.+|+++..++ ++++|.||||||||||||.+++..-. |. .|..+.. .+..++++.| +++.+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc--ccceecceee---EeccCCch
Confidence 45689999999988 99999999999999999999876422 11 1222211 1245677654 56667776
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh--HHHHHHHHHHHHhhCCCEEEEeCC---
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG--GERRRASIGVDLVHDPAVVLIDEP--- 202 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg--GerqRv~ia~~L~~~p~lllLDEP--- 202 (612)
|++..+ .|. .|+++++-+...+.+|++++||||
T Consensus 84 ~~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 DDLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred hhhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 666421 111 223334444444679999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
|+++|.... ...+++.+.+..+.++|++||+. ++.+++|++.-+.+|++...+..+++
T Consensus 122 t~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 888887552 23344444443378999999996 47889998888888988877766554
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.62 E-value=1.4e-15 Score=155.40 Aligned_cols=139 Identities=28% Similarity=0.291 Sum_probs=98.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC----hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD----AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRL 138 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 138 (612)
.-++|+||||||||||+++|+|.+++ .+|+|.++|+++. ..++.+.+++++|.+ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST--GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC--CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 57899999999999999999999977 6999999999874 234555678888865 334455655421
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 046991 139 TAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLL 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L 218 (612)
+.+ | ..+..+..+|+++++|||++ ...+..++
T Consensus 182 ----k~~---------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 ----KAE---------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ----HHH---------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 100 0 01222336999999999974 33455555
Q ss_pred HHHHHcCCcEEEEEccCCchHHH------------hccCeEEEEcCCeEEEecChhh
Q 046991 219 KSMVVNQGKTIILTIHQPGFRIL------------ELFDRLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 219 ~~l~~~~g~tii~~~H~~~~~i~------------~~~D~v~lL~~G~iv~~G~~~~ 263 (612)
+.+ + .|.++|+++|+++.+-. .+|||+++|++|+ ..|.+++
T Consensus 214 ~~~-~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 214 EAL-H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHH-h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 554 3 48999999998754222 6799999999887 5566544
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.55 E-value=4.4e-15 Score=144.24 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=57.8
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVV-TLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+.++|++||+++ +.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEE
Confidence 68888776433333 34599999999999999999888875 5567775434789999999984 67888764444444
Q ss_pred eEEE
Q 046991 254 FVVH 257 (612)
Q Consensus 254 ~iv~ 257 (612)
+...
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.53 E-value=2.4e-13 Score=145.52 Aligned_cols=78 Identities=18% Similarity=0.341 Sum_probs=66.1
Q ss_pred CCccChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 173 NCGISGGERRRASIGVDLV---------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
...+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++|+|++. .+...
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhh
Confidence 3578999999999999886 699999999999999999999999988754 347899999876 35555
Q ss_pred c--CeEEEEcCCeE
Q 046991 244 F--DRLVLLSNGFV 255 (612)
Q Consensus 244 ~--D~v~lL~~G~i 255 (612)
+ ++++.+++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57899999986
No 421
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.50 E-value=7.3e-12 Score=126.13 Aligned_cols=228 Identities=13% Similarity=0.128 Sum_probs=160.5
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCCC-CC--CChhhH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhhH-H
Q 046991 342 RFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKVG-NN--TGQVAL--QTRIGFFAFSLTFLLSSTTEGLPIFLQERR-I 415 (612)
Q Consensus 342 R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~-~~--~~~~~~--~~~~g~~f~~~~~~~~~~~~~~~~~~~er~-v 415 (612)
|+++...|||.....-+++.+++.+++|.++-+.- .. .+..+. .--.|.+.+.+..... ..+... ..||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~~-~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGISV-IWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhHH-HHHHHhC
Confidence 67788899999999999999999999999876431 10 011111 1112323222222111 112222 22332 2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 046991 416 LMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFI 495 (612)
Q Consensus 416 ~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~ 495 (612)
+.++....=-++..|+++|.+.+++..++..+++..+.|++.++.. ..++.+++..++..++..++|.++++..++.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2333333344678899999999999999999999999988877543 34555555666677778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccCCccccchhHHHhhcC
Q 046991 496 MGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEEGECSLYGNGFLKQQD 575 (612)
Q Consensus 496 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~~~c~~~g~~~L~~~g 575 (612)
.++.+.+.+..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-..-.++..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------------- 210 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVSP------------------------- 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCc-------------------------
Confidence 8899999999999999999999999999999999999999999996543332210
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Q 046991 576 LRESQKWSNLAVMLSFIIGYRVLCFF 601 (612)
Q Consensus 576 ~~~~~~w~~~~il~~~~~~~~~~~~~ 601 (612)
..+.|.++++++++.+++..++..
T Consensus 211 --~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 --TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHH
Confidence 112456788888888888777654
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=1.2e-14 Score=144.77 Aligned_cols=88 Identities=26% Similarity=0.451 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 046991 148 SRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV----HDPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223 (612)
Q Consensus 148 ~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 223 (612)
+.+.+.++..++... .+|||||.+++||.-|+ .++++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~------------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~ 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK 188 (220)
T ss_dssp HHHHHHHHCTTTTTT------------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccc------------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445566666555432 59999999999997663 46789999999999999999999999999853
Q ss_pred cCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 224 NQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 224 ~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+.-+|++||++. .++.+|+.+.+.
T Consensus 189 --~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 --QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp --TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred --cccccccccccc--cccccccccccc
Confidence 478999999974 789999888763
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.48 E-value=2.6e-13 Score=134.71 Aligned_cols=132 Identities=20% Similarity=0.281 Sum_probs=87.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCC-CCCH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFP-LLTV 126 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G--~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~-~lTv 126 (612)
.+=+|+++.=..+..++|.||||+|||||||.++. .+. ..|..... + .-.++|..|....+. ..++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la---~~G~~v~a------~--~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA---HIGSFVPA------D--SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH---hCCCeeEc------C--CcEEeeeeeeeeeeCCccCh
Confidence 34455554322237999999999999999999984 331 23443321 1 123566666432111 1111
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC--hHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS--GGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS--gGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
.+ ++| .-|.||++++++++.+|+++++|||++
T Consensus 86 ~~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~ 119 (213)
T cd03281 86 SS----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGK 119 (213)
T ss_pred hh----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 11 122 346799999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHHc--CCcEEEEEccCCch
Q 046991 205 GLDSASALHV-VTLLKSMVVN--QGKTIILTIHQPGF 238 (612)
Q Consensus 205 gLD~~~~~~i-~~~L~~l~~~--~g~tii~~~H~~~~ 238 (612)
|+|+.....+ ...++++++. .+.++|++||+++.
T Consensus 120 gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 120 GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 9999865555 5688888653 13589999999863
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.47 E-value=6.1e-14 Score=146.08 Aligned_cols=165 Identities=29% Similarity=0.436 Sum_probs=121.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEE----------------------EecC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGY----------------------VTQD 117 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~y----------------------v~Q~ 117 (612)
+||++.+++|.||-||||=|++++|.++|. -|.- +. +..|...++| =||.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpn--lg~~--~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRY--DN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCC--CCCC--CC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 689999999999999999999999999873 1210 00 0011111111 0111
Q ss_pred CCcCCC---CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCC
Q 046991 118 DALFPL---LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDP 194 (612)
Q Consensus 118 ~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p 194 (612)
-..+|. .+|.++|. +...++..+++++.+.|++..++.+. .|||||-||.+||++-+++.
T Consensus 170 vd~ipr~~k~~v~~~l~-----------~~~~r~~~~~~~~~~~L~~~~~re~~------~lsggelqrfaia~~~vq~a 232 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLD-----------RKDERDNKEEVCDQLDLNNLLDREVE------QLSGGELQRFAIAMVCVQKA 232 (592)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHhhcccHHHHHHHHHHhhHHHhhhh------hcccchhhhhhhhhhhhhhc
Confidence 111110 12333221 22233457788999999999999887 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 195 AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 195 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
++.++|||.+-||...+..-...++.+.. .++-||++.||.+. +--+.|-+.+|.
T Consensus 233 dvyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 233 DVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred ceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEeechH-HHhhhcceeEEe
Confidence 99999999999999999999999999975 57899999999974 445678888875
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.45 E-value=9.6e-14 Score=121.48 Aligned_cols=74 Identities=18% Similarity=0.080 Sum_probs=61.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lT 125 (612)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. +..++.+++++|+ ++. -|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 56899999999999999999999999999999986 5889999998742 4456667888777 444 38
Q ss_pred HHHHHHHH
Q 046991 126 VEETLMCS 133 (612)
Q Consensus 126 v~E~l~~~ 133 (612)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.45 E-value=1.3e-13 Score=159.66 Aligned_cols=130 Identities=22% Similarity=0.314 Sum_probs=90.6
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCceeeEEEECCeeCChhhhcccEEEEecCCC-cCCCCCHHHHHH
Q 046991 55 VSCEARPG-EITAIAGPSGAGKTTLLEILAGKI-SSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDA-LFPLLTVEETLM 131 (612)
Q Consensus 55 vs~~i~~G-e~~aIlG~nGsGKTTLL~~L~G~~-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~ 131 (612)
+|+.+.+| ++++|.||||+|||||||+|+|.. .+ ..| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G------------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF--QSG------------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH--HhC------------------CCccCCcccccc---chhhee
Confidence 78888888 999999999999999999999872 11 122 13333221 111 111110
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046991 132 CSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASA 211 (612)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 211 (612)
. .. ...+ . ....+ ..+|+|+++++.|++.+ .+|+++++|||++|+|+...
T Consensus 371 --~--~i---~~~~---s-------------i~~~L------StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 371 --A--DI---GDEQ---S-------------IEQNL------STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEG 420 (771)
T ss_pred --e--ec---ChHh---H-------------Hhhhh------hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHH
Confidence 0 00 0000 0 01112 27999999999998876 79999999999999999999
Q ss_pred HHH-HHHHHHHHHcCCcEEEEEccCCch
Q 046991 212 LHV-VTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 212 ~~i-~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
..+ ..+++.+++ .|.++|++||+.+.
T Consensus 421 ~ala~aiLe~l~~-~g~~viitTH~~eL 447 (771)
T TIGR01069 421 SALAISILEYLLK-QNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHHh-cCCEEEEECChHHH
Confidence 999 467888764 58899999999764
No 427
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.41 E-value=1.4e-10 Score=118.41 Aligned_cols=238 Identities=14% Similarity=0.068 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHH--HHHHHHHHHHHHHHhhhH-HHHHH
Q 046991 336 VLILGQRFCYNIFRT-NQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRI--GFFAFSLTFLLSSTTEGL-PIFLQ 411 (612)
Q Consensus 336 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~--g~~f~~~~~~~~~~~~~~-~~~~~ 411 (612)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+.+..+..+.. |++-+++++... .... ..+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~--~~~~~~~~~~ 84 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST--FETIYATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 455679999999999 99999999999999999999876432200111111111 222222111111 1111 12222
Q ss_pred --hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046991 412 --ERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSA 489 (612)
Q Consensus 412 --er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~ 489 (612)
|+..+.|-...-. ++..+.++|++.+.-..++..++...+.++ .|..+. ......+..+.+..++..++|.++|+
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333 678899999999887777777665555543 344333 33444445555667777789999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccCCccccchhH
Q 046991 490 LVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEEGECSLYGNG 569 (612)
Q Consensus 490 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~~~c~~~g~~ 569 (612)
+.++.+.+..+...+..|++.+||.+.|.+.+|.|++|+.+++|+.|+.|++-..-+++.
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~-------------------- 221 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP-------------------- 221 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC--------------------
Confidence 999999888888999999999999999999999999999999999999999644322211
Q ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 046991 570 FLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCR 606 (612)
Q Consensus 570 ~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~ 606 (612)
..+.|.++++++++.+++..++...++++
T Consensus 222 --------~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 --------GTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01134567888888888888877776554
No 428
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.39 E-value=5.2e-12 Score=137.32 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=117.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC-----------hhhhcccEEEEec
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD-----------AEHFRRISGYVTQ 116 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~-----------~~~~~~~i~yv~Q 116 (612)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..++ ..|.|.+.|+.-. ...+++.+.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 45689999 99999999999999999999999999999876 6899999665431 1235678899987
Q ss_pred CCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCccChHHHHHHHHHHHHhhCC
Q 046991 117 DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH--VASSRIGGGSSNCGISGGERRRASIGVDLVHDP 194 (612)
Q Consensus 117 ~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p 194 (612)
.+. ++.+-..-+ ...-.+.|.+..-|-+- ..|..- .--|-+| ++.
T Consensus 222 ~~~-----~~~~r~~~~-----------~~a~~iAEyfr~~g~~Vll~~Dslt---------r~A~A~r-----Eis--- 268 (438)
T PRK07721 222 SDQ-----PALMRIKGA-----------YTATAIAEYFRDQGLNVMLMMDSVT---------RVAMAQR-----EIG--- 268 (438)
T ss_pred CCC-----CHHHHHHHH-----------HHHHHHHHHHHHCCCcEEEEEeChH---------HHHHHHH-----HHH---
Confidence 543 222221100 00111223333334211 112110 0011111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHH-cCCc-----EEEEEccCCchHHHhccCeEEEEcCCeEEEecChhh
Q 046991 195 AVVLIDEP--TSGLDSASALHVVTLLKSMVV-NQGK-----TIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 195 ~lllLDEP--tsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 263 (612)
+.+.|| |+|+|+.....+.++++++.+ +.|. ||++.+||++. .+||++..+.+|+++.+++..+
T Consensus 269 --l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 --LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred --HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999874 3575 99999999973 7899999999999999998754
No 429
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.38 E-value=1.6e-11 Score=121.21 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=122.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046991 426 RASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVPNFIMGTSVISGLM 505 (612)
Q Consensus 426 ~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~ 505 (612)
+.+.++++|.+..++..++..++...+.|++.|++.. +++.+++..++..++..+++.+++++.++... ....+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 4567899999999999999999999999999998764 56777778888888999999999999987643 3344445
Q ss_pred HHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccCCccccchhHHHhhcCCCCCCchHHH
Q 046991 506 GSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEEGECSLYGNGFLKQQDLRESQKWSNL 585 (612)
Q Consensus 506 ~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~~~c~~~g~~~L~~~g~~~~~~w~~~ 585 (612)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+++. ....|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~----------------------------~~~~~~~~ 185 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN----------------------------DGTLWQAV 185 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc----------------------------HHHHHHHH
Confidence 56677899999999999999999999999999999976665432 01247788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 046991 586 AVMLSFIIGYRVLCFFILWCRC 607 (612)
Q Consensus 586 ~il~~~~~~~~~~~~~~L~~~~ 607 (612)
++++++.+++.++++..+|+++
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999888888776443
No 430
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.38 E-value=1.6e-10 Score=116.26 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=143.5
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHH-HHHHHHHHHHHHHHHHhhhHHHHHHhh--HHHHHHhcCCC
Q 046991 348 FRTNQLFATRVIQALVAGFVLGTIYLKVGNNTGQVALQT-RIGFFAFSLTFLLSSTTEGLPIFLQER--RILMRETSRGA 424 (612)
Q Consensus 348 ~Rd~~~~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~~~~~~~er--~v~~rE~~~~~ 424 (612)
+|||.....-+.+.+++-++++.+|-+-.. ....+. ..|.+-+... .++.+..--....|| ..+.|=+..-.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~er~~G~l~rl~~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT---HNRGATFIPVLMALAAI--STAFTGQAIAVARDRRYGALKRLGATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC---CcchhHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCHHHHHhcCCC
Confidence 699999999999999988888877765211 111221 2222221111 111111111223333 34455444433
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHH
Q 046991 425 YRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFSALVP---NFIMGTSVI 501 (612)
Q Consensus 425 Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~---~~~~a~~~~ 501 (612)
++..|+++|.+..++..++..+++. +++++.|++..... +..++...+....+.+++.+++++.+ +.+.+..+.
T Consensus 77 -~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 153 (232)
T TIGR00025 77 -PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA 153 (232)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7889999998888888777655554 55667788765433 33334444555566667777777764 444557778
Q ss_pred HHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccCCccccchhHHHhhcCCCCCCc
Q 046991 502 SGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEEGECSLYGNGFLKQQDLRESQK 581 (612)
Q Consensus 502 ~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~~~c~~~g~~~L~~~g~~~~~~ 581 (612)
..+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-.++. +....
T Consensus 154 ~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~---------------------------~~~~~ 206 (232)
T TIGR00025 154 NLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV---------------------------DTFGA 206 (232)
T ss_pred HHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC---------------------------ChhhH
Confidence 888899999999999999999999999999999999998754322211 01224
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 046991 582 WSNLAVMLSFIIGYRVLCFFILW 604 (612)
Q Consensus 582 w~~~~il~~~~~~~~~~~~~~L~ 604 (612)
|.++++++++.+++..++...++
T Consensus 207 ~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 207 VRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888887777766554
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=3.4e-12 Score=127.20 Aligned_cols=136 Identities=17% Similarity=0.278 Sum_probs=89.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK-ISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~-~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
.+.+.+|+++.+++|++++|.||||+||||+++++++. +.+ ..|..... +. -.++|..| ++..+..
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la--~~G~~v~a-~~-------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA--QIGSFVPA-SS-------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCCCEEEc-Cc-------eEEeccce---EEEEecC
Confidence 35789999999999999999999999999999999994 322 45554321 11 11233222 1111111
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC--hHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS--GGERRRASIGVDLVHDPAVVLIDEPTS 204 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS--gGerqRv~ia~~L~~~p~lllLDEPts 204 (612)
.|.+. .++| ..|-+|++-...-+.+|+++|+|||.+
T Consensus 84 ~d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~ 121 (222)
T cd03287 84 SDSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGR 121 (222)
T ss_pred ccccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCC
Confidence 11110 0122 234455555555567899999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHHcCCcEEEEEccCCch
Q 046991 205 GLDSASALHV-VTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 205 gLD~~~~~~i-~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
|.|+.....+ ..+++.+.+..+.++|++||+++.
T Consensus 122 gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 122 GTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred CCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 9998777775 567777765547899999999863
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=2.5e-12 Score=127.60 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 046991 179 GERRRASIGVDLVHDPAVVLIDEPT-----SGLDSASALHVVTLLKSMVV 223 (612)
Q Consensus 179 GerqRv~ia~~L~~~p~lllLDEPt-----sgLD~~~~~~i~~~L~~l~~ 223 (612)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999864
No 433
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.33 E-value=9e-10 Score=112.23 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhCC-CCC-----CChhh--HHHHHHHHHHHHHHHHHHHhh
Q 046991 333 VQEVLILGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLKV-GNN-----TGQVA--LQTRIGFFAFSLTFLLSSTTE 404 (612)
Q Consensus 333 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~~-~~~-----~~~~~--~~~~~g~~f~~~~~~~~~~~~ 404 (612)
++++..+.+|+++...|||..+..-+++.++.-+++|.+|-.. +.+ .+..+ ..--.|++.+.+.+..+. .
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--S 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 3678899999999999999999999999999999999998543 110 00001 111123322222221111 1
Q ss_pred hHHHHHH--hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 046991 405 GLPIFLQ--ERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNS 482 (612)
Q Consensus 405 ~~~~~~~--er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~ 482 (612)
+. .... |+..+.+=+... -++..+.+++++...-..++..++...+.+. .|.+....++......+.+..+...+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 1222 333433334433 3778899999999988877776655555443 36655544444444445556677789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCc---cchhhhhhccChhhHHHHHHHHHHhCCCCCcccccccc
Q 046991 483 FVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKI---PDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFE 559 (612)
Q Consensus 483 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~ 559 (612)
+|.++|+++++.+.+..+.++++.+++..||.+.|.+.+ |.|++|+.+++|+.|..|++=.. +.+.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~---------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ---------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC----------
Confidence 999999999998888888888888999999999998766 88999999999999999887432 2110
Q ss_pred CCccccchhHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 046991 560 EGECSLYGNGFLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWC 605 (612)
Q Consensus 560 ~~~c~~~g~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~ 605 (612)
..|..+.+++++.+++..++....|+
T Consensus 225 --------------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 --------------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred --------------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 01455667777777777777766654
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.29 E-value=2.4e-12 Score=149.61 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=63.2
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT-LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
.+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. +++.+.+ .|.++|++||+++. ....+|+..++ ++
T Consensus 390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 7999999999999998 8999999999999999999998865 6677654 58899999999763 33344544433 45
Q ss_pred eEEEe
Q 046991 254 FVVHN 258 (612)
Q Consensus 254 ~iv~~ 258 (612)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 435
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=5.8e-12 Score=142.54 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=69.8
Q ss_pred CccChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 174 CGISGGERRRASIGVDLVHD----PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~----p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|++++ + +++||++||+|. +...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHH--HHHhcCeEEE
Confidence 47899999999999999985 69999999999999999999999999996 3 789999999986 4568999999
Q ss_pred EcCCe
Q 046991 250 LSNGF 254 (612)
Q Consensus 250 L~~G~ 254 (612)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.27 E-value=8.2e-13 Score=133.72 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=106.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE---CCeeCChhhhccc---EEEEecCCCcCCCCCHHHHH
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV---NDRPMDAEHFRRI---SGYVTQDDALFPLLTVEETL 130 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~---~g~~~~~~~~~~~---i~yv~Q~~~l~~~lTv~E~l 130 (612)
+.+.+||.++|+||+|+|||||++.|++.......+..+++ .+...+..++.+. +-.+.+-+. +..+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 46889999999999999999999999998865211223222 2222233333222 222333232 111211
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHcCC------------cccccccccCCCCCCccChHH--------HHHHHHHHHH
Q 046991 131 MCSALLRLTAGRRKQAASRVRGLLKELGL------------DHVASSRIGGGSSNCGISGGE--------RRRASIGVDL 190 (612)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~v~~~l~~lgL------------~~~~~~~vg~~~~~~~LSgGe--------rqRv~ia~~L 190 (612)
.... ...+.++... .-|- .+..++.. ....+.+|||| +||+++|+++
T Consensus 86 ~~~~----------~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~--~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 86 QVAE----------MVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVV--PPSGKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHH----------HHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhcc--ccCCCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 1100 0001111111 1111 11122222 22334689999 9999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 191 VHDPAVVLIDEPTSGLDSASALH-VVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 191 ~~~p~lllLDEPtsgLD~~~~~~-i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
..+++|.+| ||+.+|+.+... ++ +.++. ..+.|.|+.+|+.. ....+|.|.+|+.|++
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999999999 999999654443 44 44443 35679999999986 4689999999999987
No 437
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=138.57 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=69.2
Q ss_pred CccChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 174 CGISGGERRRASIGVDLVH----DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +..++|+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEE
Confidence 4689999999999999997 5899999999999999999999999999963 589999999996 5689999999
Q ss_pred EcCC
Q 046991 250 LSNG 253 (612)
Q Consensus 250 L~~G 253 (612)
+.++
T Consensus 505 v~k~ 508 (553)
T PRK10869 505 VSKE 508 (553)
T ss_pred Eecc
Confidence 9874
No 438
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=1.2e-11 Score=123.08 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=90.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
++.+-+|+++..++|++++|.||||+||||+++++++..--. ..| -.+..+. ..++++ +.++..+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la-~~G------~~vpa~~--~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA-QMG------MDVPAKS--MRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH-HcC------CccCccc--cEeccc---cEEEEecCcc
Confidence 457899999999999999999999999999999999874210 011 1111111 011111 1222222222
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC--hHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS--GGERRRASIGVDLVHDPAVVLIDEPTSG 205 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS--gGerqRv~ia~~L~~~p~lllLDEPtsg 205 (612)
|++.. ++| ..|-+|++-....+.+|+++++|||.+|
T Consensus 84 d~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 84 DDIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred ccccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 22210 111 1345555555555678999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHHcCCcEEEEEccCCch
Q 046991 206 LDSASALHVVTL-LKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 206 LD~~~~~~i~~~-L~~l~~~~g~tii~~~H~~~~ 238 (612)
+|+.....+... ++.+.+..+.++|++||+++.
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 999999999887 777765448899999999864
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=8.6e-11 Score=131.50 Aligned_cols=136 Identities=24% Similarity=0.414 Sum_probs=102.8
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHH------HHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhC
Q 046991 121 FPLLTVEETLMCSALLRLTAGRRKQAASRVRG------LLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHD 193 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~------~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~ 193 (612)
+..|++.|.+.|...+.+.....+-.+..+.+ .|..+||.-. .++..+ +|||||.||+-+|..+-.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~------TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAG------TLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCC------CcChhHHHHHHHHHHhccc
Confidence 34578888888877665432111111222222 3445677643 344443 8999999999999999765
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 194 P--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 194 p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
= =+++||||+-||-+..-..+++.|+++. +.|-|+|++.||++ ....+|+|+=| +.|+|++.|+++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 3 3679999999999999999999999996 56889999999974 78899999987 468999999999875
No 440
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.24 E-value=1.4e-11 Score=139.84 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=69.0
Q ss_pred CCccChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH
Q 046991 173 NCGISGGERRRASIGVDLV----------HDPAVVLIDEPT-SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL 241 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~----------~~p~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 241 (612)
...||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~--~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDH--DP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchh--ch
Confidence 3589999999999999887 599999999998 789999999999999987 3789999999975 46
Q ss_pred hccCeEEEEcC-CeE
Q 046991 242 ELFDRLVLLSN-GFV 255 (612)
Q Consensus 242 ~~~D~v~lL~~-G~i 255 (612)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
No 441
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2.1e-11 Score=147.44 Aligned_cols=80 Identities=25% Similarity=0.314 Sum_probs=73.0
Q ss_pred CCCccChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH
Q 046991 172 SNCGISGGERRRASIGVDLVH----------DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL 241 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~----------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 241 (612)
.++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++.. .|++|+++||++.. ..
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~-~~ 1024 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEF-RE 1024 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH-HH
Confidence 345899999999999999986 7999999999999999999999999999975 68999999999985 88
Q ss_pred hccCeEEEEcCC
Q 046991 242 ELFDRLVLLSNG 253 (612)
Q Consensus 242 ~~~D~v~lL~~G 253 (612)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999753
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.19 E-value=2.3e-11 Score=121.25 Aligned_cols=62 Identities=31% Similarity=0.468 Sum_probs=53.2
Q ss_pred ccChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 175 GISGGERRRASIGVDLVHDP---AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
.+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|++.++ .+.-+|+|||.|.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 56999999999998888766 89999999999999999999999998875 4789999999985
No 443
>PRK15066 inner membrane transport permease; Provisional
Probab=99.18 E-value=2.3e-08 Score=102.26 Aligned_cols=242 Identities=15% Similarity=0.169 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHhhCC-CCCCChhhHHH--HHHHHHHHHHHHHHHHhh-hH
Q 046991 332 HVQEVLILGQRFCYNIFRTNQL-FATRVIQALVAGFVLGTIYLKV-GNNTGQVALQT--RIGFFAFSLTFLLSSTTE-GL 406 (612)
Q Consensus 332 ~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~ll~G~~f~~~-~~~~~~~~~~~--~~g~~f~~~~~~~~~~~~-~~ 406 (612)
.|+-++.+.+|+.+...||+.. +..-+++.++..+++|.++-.. +.. +..+... -.|.+.+... ..++. ..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~~y~~fl~pGll~~~~~---~~~~~~~~ 81 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGFSYMQFIVPGLIMMSVI---TNSYSNVA 81 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCCcHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3677889999999999999864 4445556666677777665321 110 1111111 1122222211 11222 11
Q ss_pred HHHHHhhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 046991 407 PIFLQERRI-LMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVA 485 (612)
Q Consensus 407 ~~~~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~ 485 (612)
..+.++|.. ..++...---++..+.+++++...-..++..++...+.+...|.+.. ....++..+.+........+.
T Consensus 82 ~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 82 SSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 223333311 01111122347778999999988777666665555555544465543 222222333333333334588
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccCCcccc
Q 046991 486 CFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEEGECSL 565 (612)
Q Consensus 486 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~~~c~~ 565 (612)
++|++.++.+....+.+.++.+++..||.+.|.+++|.|++|+.+++|+.|..|++=..-+ +.
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g~---------------- 222 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-GI---------------- 222 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-CC----------------
Confidence 8888888888888888889999999999999999999999999999999999998843222 10
Q ss_pred chhHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046991 566 YGNGFLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRC 607 (612)
Q Consensus 566 ~g~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 607 (612)
.....|.++++++++.+++..++...+|+++
T Consensus 223 -----------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 223 -----------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0112467888899999988888887776443
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.17 E-value=2e-10 Score=115.49 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=91.4
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHc
Q 046991 58 EARPGEITAIAGPSGAGKTTL-LEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALL 136 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTL-L~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l 136 (612)
-+++|++++|.|+|||||||| ++.+.+..++ | ..+.|+..+ .|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g---------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN----G---------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC----C---------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 489999999999999999999 7999987643 2 113444421 2455555443332
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CH
Q 046991 137 RLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV----HDPAVVLIDEPTSGL----DS 208 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgL----D~ 208 (612)
... - ++.... |.-...+... .+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~~---~-------~~~~~~-~~l~~~~~~~-------~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GYD---I-------NKKLIS-GKLLYIPVYP-------LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CCc---h-------HHHhhc-CcEEEEEecc-------cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 211 0 111111 1100111111 36776655544444332 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCCch------HHHhccCeEEEEc
Q 046991 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGF------RILELFDRLVLLS 251 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~------~i~~~~D~v~lL~ 251 (612)
.....+.+.++++++. |.|+++++|+... .+..++|-++.|+
T Consensus 137 ~~~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 137 VAVNDLMAFFKRISSL-NKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888999999998754 7777776654321 0234567777776
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.17 E-value=3.1e-10 Score=109.73 Aligned_cols=146 Identities=24% Similarity=0.191 Sum_probs=95.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCH
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRR 143 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 143 (612)
++.|.||+|+|||||.--++-.... +| +.+.|+.= +.|..+.+.....+.. ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---------~g---------~~v~~~s~------e~~~~~~~~~~~~~g~---~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---------RG---------EPGLYVTL------EESPEELIENAESLGW---DL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---------CC---------CcEEEEEC------CCCHHHHHHHHHHcCC---Ch
Confidence 3679999999999988655332111 11 11334321 1244444443322211 11
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHH
Q 046991 144 KQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERR------RASIGVDLVHDPAVVLIDEPTSGLD---SASALHV 214 (612)
Q Consensus 144 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD---~~~~~~i 214 (612)
+-+...|+....+.... .+|+||+| +.........+|+++++|||++.+| ......+
T Consensus 54 --------~~l~~~g~l~~~d~~~~------~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i 119 (187)
T cd01124 54 --------ERLEDEGLLAIVDADPD------EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI 119 (187)
T ss_pred --------HHHHhcCCeEEEecCcc------ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH
Confidence 11233454444555443 78999998 4455555667999999999999999 8888888
Q ss_pred HHHHHHHHHcCCcEEEEEccCCch--------HHHhccCeEEEEc
Q 046991 215 VTLLKSMVVNQGKTIILTIHQPGF--------RILELFDRLVLLS 251 (612)
Q Consensus 215 ~~~L~~l~~~~g~tii~~~H~~~~--------~i~~~~D~v~lL~ 251 (612)
.+.++.+++ .|.|+|+++|+... .+..++|.++.|+
T Consensus 120 ~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 120 RRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 899988865 58999999998753 1567899999886
No 446
>PRK13695 putative NTPase; Provisional
Probab=99.12 E-value=2.6e-11 Score=116.51 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=63.1
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEP--TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.+||+|+-+..+++..+.+|+++++||| +.++|. .+.+.+.++. +.++++|+++|+. .+...+|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~-~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVL-DSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHH-hCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 6999999999999999999999999995 444543 3456666665 3578999999994 35678999999999
Q ss_pred CeEEEec
Q 046991 253 GFVVHNG 259 (612)
Q Consensus 253 G~iv~~G 259 (612)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9987663
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.08 E-value=3.5e-10 Score=118.66 Aligned_cols=142 Identities=16% Similarity=0.182 Sum_probs=95.1
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee-CChhhhcccEEEEecCCC-cCCCCCHHHHHHH
Q 046991 55 VSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP-MDAEHFRRISGYVTQDDA-LFPLLTVEETLMC 132 (612)
Q Consensus 55 vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~ 132 (612)
+++.+++|+.++|.||+|||||||+++|++..++ ..|.+.+.... +.... +..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFLPH-PNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCCCC-CCEEEEEecCCCCCcC----------
Confidence 5577889999999999999999999999999976 45666664311 11000 112222111000 000
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046991 133 SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASAL 212 (612)
Q Consensus 133 ~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 212 (612)
..+- .-.++.+|-.+|+++++|||.+ .
T Consensus 204 ------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 204 ------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------H
Confidence 1111 1134556778999999999996 3
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 213 HVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 213 ~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
++.+.++.+. .++.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 231 e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 4566677664 44456799999997 46679999999999988888777654
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.07 E-value=4.5e-10 Score=105.08 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=47.4
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCch
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTS----------GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
.+.++.++...+.+...+|+++++|||++ +.|......+.+++.. +++.+.|+|+++|..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCc
Confidence 45666677888889999999999999994 4555555666665554 45679999999998864
No 449
>PRK01156 chromosome segregation protein; Provisional
Probab=99.05 E-value=9.8e-10 Score=131.39 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCccc--c-cc-------cccCCCCCCccChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHH
Q 046991 148 SRVRGLLKELGLDHV--A-SS-------RIGGGSSNCGISGGERRRASI------GVDLVHDPAVVLIDEPTSGLDSASA 211 (612)
Q Consensus 148 ~~v~~~l~~lgL~~~--~-~~-------~vg~~~~~~~LSgGerqRv~i------a~~L~~~p~lllLDEPtsgLD~~~~ 211 (612)
....+++..+|+... . +. ..+....+..||||||+|++| |++++.+|++++|||||+|||+...
T Consensus 764 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~ 843 (895)
T PRK01156 764 SLTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRR 843 (895)
T ss_pred HHHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHH
Confidence 345667777887410 0 00 111112345899999999975 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-C-cEEEEEccCCchHHHhccCeEEEEc
Q 046991 212 LHVVTLLKSMVVNQ-G-KTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 212 ~~i~~~L~~l~~~~-g-~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
..+.++++...+.. + .++|++||++. ....||+++.+.
T Consensus 844 ~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~d~ii~~~ 883 (895)
T PRK01156 844 TNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhcCeEEEEE
Confidence 99999998654433 3 48999999986 458999999997
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.04 E-value=2.7e-09 Score=125.50 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=59.9
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH---------hccCeEEEEcCCeEEEecC
Q 046991 191 VHDPAVVLIDEPTSGL-DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL---------ELFDRLVLLSNGFVVHNGT 260 (612)
Q Consensus 191 ~~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~---------~~~D~v~lL~~G~iv~~G~ 260 (612)
..+|+++++|||+.+| |+..+..+.+.++++.+ .|.+++++||+++. +. +.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999865 57899999999974 54 6899999999999876664
Q ss_pred h
Q 046991 261 L 261 (612)
Q Consensus 261 ~ 261 (612)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=99.03 E-value=4.4e-10 Score=134.21 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=67.8
Q ss_pred CCCccChHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 172 SNCGISGGERRR------ASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 172 ~~~~LSgGerqR------v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|..++. .+.+||++||++. +...||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~--~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEE--LKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH--HHHhCC
Confidence 456899999995 5555678899999999999999999999999999999864 4679999999974 678999
Q ss_pred eEEEEcC
Q 046991 246 RLVLLSN 252 (612)
Q Consensus 246 ~v~lL~~ 252 (612)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
No 452
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.03 E-value=3.4e-09 Score=100.27 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=52.0
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
....|.||-=---+.+. .++.-+++||||-++|.+.-+..++..|++++++ |.-+|+.||.|-
T Consensus 127 Lh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh
Confidence 34679999654444444 3567899999999999999999999999999975 789999999984
No 453
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.99 E-value=1.1e-09 Score=132.30 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=68.2
Q ss_pred CCccChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 173 NCGISGGERRRASIGVDLVH--------DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~--------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.+|||||+++++||++|+. +|++||+||||+|||+.+...+++.|.++++ .|+||+++||.... ..++-
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l-~~~i~ 1024 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAM-KERIP 1024 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHH-HHhcc
Confidence 35899999999999999996 8999999999999999999999999999975 59999999998764 45566
Q ss_pred CeEEEEcC
Q 046991 245 DRLVLLSN 252 (612)
Q Consensus 245 D~v~lL~~ 252 (612)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
No 454
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=9.4e-10 Score=135.88 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.2
Q ss_pred CccChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----cCCcEEEEEccCCchHHHhc
Q 046991 174 CGISGGERR------RASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVV----NQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 174 ~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tii~~~H~~~~~i~~~ 243 (612)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.+||++||++.. +..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHH
Confidence 379999999 99999999999999999999999999999999999988742 247899999999974 6666
Q ss_pred c
Q 046991 244 F 244 (612)
Q Consensus 244 ~ 244 (612)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.98 E-value=1.7e-09 Score=117.03 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=108.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..++ ..|.|.+.|+.. .+|+
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg---------------------~ev~ 198 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERG---------------------REVK 198 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCc---------------------ccHH
Confidence 34578885 99999999999999999999999999999865 577776665532 3566
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh-------hCCCEEEEe
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV-------HDPAVVLID 200 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~-------~~p~lllLD 200 (612)
|.+.... ..-|+.+. ..+- ....-|.|+|+|+..+.+.+ .++-++++|
T Consensus 199 e~~~~~l--------------------~~~gl~~t--vvv~---~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilD 253 (432)
T PRK06793 199 DFIRKEL--------------------GEEGMRKS--VVVV---ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMD 253 (432)
T ss_pred HHHHHHh--------------------hhccccee--EEEE---ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 6553211 11122111 0010 11267999999999998887 789999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecC
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 260 (612)
|||+..|+. .++-..+.+... .|.+..+.+|-+ .+.+ |.-...+|.+...+.
T Consensus 254 slTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~--~L~E---Rag~~~~GSiT~~~t 305 (432)
T PRK06793 254 SVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMK--KLLE---RSGKTQKGSITGIYT 305 (432)
T ss_pred chHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccch--hHHH---HhccCCCcceEEEEE
Confidence 999999996 555556666643 478888888843 2444 333457888865544
No 456
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.88 E-value=4e-07 Score=92.77 Aligned_cols=166 Identities=17% Similarity=0.283 Sum_probs=121.9
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 046991 415 ILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNSFVACFS-ALVPN 493 (612)
Q Consensus 415 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~-~~~~~ 493 (612)
.+.|=..+...+ ..+++++.+.......+...+...+..+..|. .....+..+..++.+..+...++|.+++ ....+
T Consensus 119 ~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 196 (286)
T COG0842 119 TLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQ 196 (286)
T ss_pred cHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444444444433 45777777777766666666666666666662 2334556666666677777778888666 35666
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCCCCccccccccCCccccchhHHHhh
Q 046991 494 FIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLEFEEGECSLYGNGFLKQ 573 (612)
Q Consensus 494 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~~~~~~c~~~g~~~L~~ 573 (612)
...+..+...+..++..++|.+.|.+.+|.|++|+.++.|..|+.+++-.....+...
T Consensus 197 ~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~---------------------- 254 (286)
T COG0842 197 LQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN---------------------- 254 (286)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch----------------------
Confidence 7788888888899999999999999999999999999999999999987655544221
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 046991 574 QDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRCYR 609 (612)
Q Consensus 574 ~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~ 609 (612)
...|.++++++++.+++.+++...++++.+.
T Consensus 255 -----~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 255 -----DGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1157788999999999999999988876653
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.88 E-value=7.7e-10 Score=119.47 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=45.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee-EEEECCeeCC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG-KLLVNDRPMD 103 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G-~I~~~g~~~~ 103 (612)
+.+|++||+++++||+++|+|||||||||||+ +|+..+ .+| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~--~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF--SEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC--CCCCEEEECCEECC
Confidence 46899999999999999999999999999999 777765 455 8999999874
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.88 E-value=1.1e-08 Score=103.51 Aligned_cols=137 Identities=26% Similarity=0.397 Sum_probs=87.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECC-eeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND-RPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA 140 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g-~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 140 (612)
|++..|.||+|+|||||.-.++=-.. +|.=++.+ ... .-...+-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~---~~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV---TEPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc---CCCceEEEEECCC----------------------
Confidence 77899999999999999988864332 12111111 111 0122344544222
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHH----------------HHhhCCCEEEEeCCCC
Q 046991 141 GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGV----------------DLVHDPAVVLIDEPTS 204 (612)
Q Consensus 141 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~----------------~L~~~p~lllLDEPts 204 (612)
+.++..+|+..+.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~--------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF--------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE--------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 23344556666666666554433332 2244555554433 335799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 205 ------GLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 205 ------gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
.+|+.....+++.|++++++.|.+||+++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 479999999999999999888999999999874
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.85 E-value=3.2e-09 Score=130.21 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=66.8
Q ss_pred CCCccChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 172 SNCGISGGERRRASIGVDLV----HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
.+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+++++ +.++|++||++. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 34589999999999999984 67799999999999999999999999999864 478999999987 35789999
Q ss_pred EEEc
Q 046991 248 VLLS 251 (612)
Q Consensus 248 ~lL~ 251 (612)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8764
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.84 E-value=1.4e-08 Score=99.79 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 185 SIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 185 ~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+++++|..+|+++++|||. |..+...+++ .+. .|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778888999999999996 6655443333 343 5889999999987 357789987764
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.81 E-value=7e-08 Score=97.19 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=97.3
Q ss_pred cceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 49 KFILKDV-SCEARPGEITAIAGPSGAGKTTLLEILA-GKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 49 ~~iL~~v-s~~i~~Ge~~aIlG~nGsGKTTLL~~L~-G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
..-|+.+ .+=+++|.++.|.|++|||||||...++ +..+. .+ .+.|+..+. +.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~----------------~~~y~~~e~------~~ 65 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GK----------------KVYVITTEN------TS 65 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC---CC----------------EEEEEEcCC------CH
Confidence 3345554 5679999999999999999999998874 22211 11 234444321 23
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh--CCCEEEEeCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH--DPAVVLIDEPTS 204 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~--~p~lllLDEPts 204 (612)
.+.+.-...+... - ++.+. -|.....+..+. .....|.++++.+.....++. +|+++++||||+
T Consensus 66 ~~~~~~~~~~g~~---~-------~~~~~-~g~l~i~~~~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 66 KSYLKQMESVKID---I-------SDFFL-WGYLRIFPLNTE---GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred HHHHHHHHHCCCC---h-------hHHHh-CCCceEEecccc---ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 3333221111110 0 00000 011111111111 011356788999999999987 999999999996
Q ss_pred C---CCHHHHHHHHHHHHHHHHcCCcEEEEEccCCch------HHHhccCeEEEEcC
Q 046991 205 G---LDSASALHVVTLLKSMVVNQGKTIILTIHQPGF------RILELFDRLVLLSN 252 (612)
Q Consensus 205 g---LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~------~i~~~~D~v~lL~~ 252 (612)
. .|......+++.++.+++ .|.|+++++|+... .+..++|-++.|+.
T Consensus 132 ~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 132 FATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 4 455555566666776664 57899999998753 14566777777763
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.77 E-value=2e-08 Score=110.30 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=92.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETL 130 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 130 (612)
++++.+..++.|++++++||||+||||++..|++.... ..|. +.++++.+|. ...++.|+|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~--~~G~--------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM--RHGA--------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH--hcCC--------------CeEEEEeCCc---cchhHHHHH
Confidence 56677777889999999999999999999999998643 1231 2578888876 346899999
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 046991 131 MCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERR-RASIGVDLVHDP-----AVVLIDEPTS 204 (612)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerq-Rv~ia~~L~~~p-----~lllLDEPts 204 (612)
.+.+....- +.....+..+...+..++.+.....+. +...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGV--pv~~~~~~~Dl~~aL~~L~d~d~VLID------TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGV--PVHAVKDAADLRLALSELRNKHIVLID------TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCC--CeeccCCchhHHHHHHhccCCCeEEeC------CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 987655311 111112233444555677666555664 32222322 233444455554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEcc
Q 046991 205 GLDSASALHVVTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~~~g~tii~~~H 234 (612)
+ ..+.+.++.... .+.+=++.|+
T Consensus 378 ~------~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhcc-CCCCEEEEeC
Confidence 7 334444554432 3444344444
No 463
>PRK02224 chromosome segregation protein; Provisional
Probab=98.76 E-value=1.5e-08 Score=121.10 Aligned_cols=78 Identities=32% Similarity=0.411 Sum_probs=66.4
Q ss_pred CCccChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHH
Q 046991 173 NCGISGGERR------RASIGVDLVHD-----P-AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRI 240 (612)
Q Consensus 173 ~~~LSgGerq------Rv~ia~~L~~~-----p-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i 240 (612)
+..||||||+ |+++|++++.+ | +++++||||++||+.....+.++|++++.....+||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4589999999 89999888864 3 6799999999999999999999999987432348999999986 3
Q ss_pred HhccCeEEEEcC
Q 046991 241 LELFDRLVLLSN 252 (612)
Q Consensus 241 ~~~~D~v~lL~~ 252 (612)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=3.3e-07 Score=82.43 Aligned_cols=119 Identities=29% Similarity=0.411 Sum_probs=77.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA 140 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 140 (612)
++..+.|.||+|+||||+++.|+...... ..+-+.++......... ..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~------------------~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVL------------------DQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccCH------------------HHHH-----------
Confidence 36789999999999999999999998542 11344444332211000 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH----
Q 046991 141 GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVT---- 216 (612)
Q Consensus 141 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~---- 216 (612)
.... ........+++..+..++++--.+|+++++||+..-.+.........
T Consensus 51 -------------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 51 -------------------LIIV------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred -------------------hhhh------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 0000 01112467788888888888877789999999999999988887765
Q ss_pred -HHHHHHHcCCcEEEEEcc
Q 046991 217 -LLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 217 -~L~~l~~~~g~tii~~~H 234 (612)
.........+..+|+++|
T Consensus 106 ~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHhcCCCEEEEEeC
Confidence 223333445778999998
No 465
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=1.5e-08 Score=124.45 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCccChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 173 NCGISGGERRRASIGVDLVH----DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+..||||||++++||++++. +|++++||||++|||+.....+.++|+++++ +..+|++||++. ....||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHH--HHHhcceeE
Confidence 45899999999999999985 6799999999999999999999999999853 468999999985 568999998
Q ss_pred EEcC
Q 046991 249 LLSN 252 (612)
Q Consensus 249 lL~~ 252 (612)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.62 E-value=4.8e-08 Score=97.96 Aligned_cols=166 Identities=20% Similarity=0.152 Sum_probs=84.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCceeeEEEECCeeCChhh---hcccEEEEecCCCcCCCC
Q 046991 51 ILKDV-SCEARPGEITAIAGPSGAGKTTLLEILA--GKISSRKVSGKLLVNDRPMDAEH---FRRISGYVTQDDALFPLL 124 (612)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIlG~nGsGKTTLL~~L~--G~~~~~~~~G~I~~~g~~~~~~~---~~~~i~yv~Q~~~l~~~l 124 (612)
-|+.+ .+-+++|++++|.||+|+|||||...++ +.. + .++-+++..+.. .++ ..+..++.+|+....+.+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~--g~~~~~is~e~~-~~~i~~~~~~~g~~~~~~~~~~~l 83 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-D--GDPVIYVTTEES-RESIIRQAAQFGMDFEKAIEEGKL 83 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-c--CCeEEEEEccCC-HHHHHHHHHHhCCCHHHHhhcCCE
Confidence 45553 5679999999999999999999988655 433 2 234566655332 111 122344444432211222
Q ss_pred CHHHHHHHHH--HccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 125 TVEETLMCSA--LLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 125 Tv~E~l~~~~--~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
.+.|.+.... .......+.++..+++.++++..|+.. .+.++-.+..+++|||
T Consensus 84 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------------~~vvIDsl~~l~~~~~ 138 (229)
T TIGR03881 84 VIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGH-------------------------ARLVIDSMSAFWLDKP 138 (229)
T ss_pred EEEEccccccccccccccCCHHHHHHHHHHHHHhhccCc-------------------------eEEEecCchhhhccCh
Confidence 2221110000 000001123333344444444433211 0112223333444555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCch-------HHHhccCeEEEEc
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGF-------RILELFDRLVLLS 251 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~-------~i~~~~D~v~lL~ 251 (612)
. ...++...|++.+++.|.|+|+++|.... .+..++|.|+.|+
T Consensus 139 ~------~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 139 A------MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred H------HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 3 33455555666666779999999995431 2445789999886
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.60 E-value=3.5e-07 Score=108.38 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=54.1
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHh--ccCeEEEEcCCeEE
Q 046991 186 IGVDLVHDPAVVLIDEPTSGL-DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILE--LFDRLVLLSNGFVV 256 (612)
Q Consensus 186 ia~~L~~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~--~~D~v~lL~~G~iv 256 (612)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||+++. +.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 567788999999999999999 79999999999999875 57799999999984 654 33444444444444
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.60 E-value=1.1e-07 Score=92.43 Aligned_cols=83 Identities=19% Similarity=0.109 Sum_probs=60.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCC--CcCCCCCHHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDD--ALFPLLTVEE 128 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~E 128 (612)
..+=+.+.+++|+.++|+||||||||||+++|+|+.++ ..|.|.+.+..-.....+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 44555667899999999999999999999999999976 6899999774321112234566666544 3466778888
Q ss_pred HHHHHHH
Q 046991 129 TLMCSAL 135 (612)
Q Consensus 129 ~l~~~~~ 135 (612)
.+....+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 8876543
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.59 E-value=4.6e-07 Score=98.97 Aligned_cols=173 Identities=19% Similarity=0.233 Sum_probs=110.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-----------hhhcccEEEEec
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-----------EHFRRISGYVTQ 116 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q 116 (612)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..++ ..|.+...|+.-.. ..+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA--DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 46789999 99999999999999999999999999999866 56777666654321 112334444444
Q ss_pred CCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc--ccccccCCCCCCccCh-HHHHHHHHHHHHhhC
Q 046991 117 DDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV--ASSRIGGGSSNCGISG-GERRRASIGVDLVHD 193 (612)
Q Consensus 117 ~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~--~~~~vg~~~~~~~LSg-GerqRv~ia~~L~~~ 193 (612)
.+. ++.+-..-+ ...-.+.|.+...|-+-. .|. ++- -|-+| ++.
T Consensus 227 ~d~-----~p~~r~~~~-----------~~a~t~AE~frd~G~~Vll~~Ds----------lTr~A~A~R-----Eis-- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGA-----------YVATAIAEYFRDQGKDVLLLMDS----------VTRFAMAQR-----EIG-- 273 (440)
T ss_pred CCC-----CHHHHHHHH-----------HHHHHHHHHHHHCCCCEEEEEeC----------hHHHHHHHH-----HHH--
Confidence 333 222222100 001112233333343210 121 110 11111 111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCc-------EEEEEccCCchHHHhccCeEEEEcCCeEEEecChhh
Q 046991 194 PAVVLIDEP--TSGLDSASALHVVTLLKSMVVNQGK-------TIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 194 p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~~g~-------tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 263 (612)
+.+.|| +.|+|+.....+-+++.+... .+. ||++..||... .++|++.-+.+|+++.+.+.++
T Consensus 274 ---l~~ge~P~~~Gypp~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 ---LAAGEPPATKGYTPSVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ---HhcCCCCcccccChhHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhh
Confidence 335675 459999999999999999874 467 88889999753 5789999999999999887665
No 470
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=6.2e-08 Score=105.02 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=109.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCeeCCh---h------hhcccEEEEecC
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRPMDA---E------HFRRISGYVTQD 117 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~~~~---~------~~~~~i~yv~Q~ 117 (612)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..++. ..-|.|-.+|.++.. + ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998763 123555555554421 1 124468999999
Q ss_pred CCcCCCCCHHHHHHHHHHccCCCCCH----HHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhC
Q 046991 118 DALFPLLTVEETLMCSALLRLTAGRR----KQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHD 193 (612)
Q Consensus 118 ~~l~~~lTv~E~l~~~~~l~~~~~~~----~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~ 193 (612)
+..+..+++.|++...+........+ -+...+..++..++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl---------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL---------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH----------------------------------
Confidence 99999999999998776542110000 0001111111221111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcC---CcEEEEEccCCchHHH-hccCeEEEEcCCeEEEe
Q 046991 194 PAVVLIDEP--TSGLDSASALHVVTLLKSMVVNQ---GKTIILTIHQPGFRIL-ELFDRLVLLSNGFVVHN 258 (612)
Q Consensus 194 p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~~---g~tii~~~H~~~~~i~-~~~D~v~lL~~G~iv~~ 258 (612)
.+.|| +.|-.+.--..+-+++.+..+.. -.|.+.+..-+..++. -.+|.+.-+-||+++-+
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12344 23666777777777777753322 2466666654433322 35677777889999874
No 471
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.58 E-value=1.8e-06 Score=81.13 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=94.0
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccch--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 046991 411 QERRILMRETSRGAYRASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQV--DGFLFFSLVVWMVLLMSNSFVACFS 488 (612)
Q Consensus 411 ~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~--~~f~~f~~~~~l~~~~~~~~~~~i~ 488 (612)
.|+..+.|-+..-. +++.|+++|++...-..++..++...+.++ .|.+.+. ...+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777766 688899999999999999988877777754 4887653 2222333333333444455566665
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHH
Q 046991 489 ALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFL 542 (612)
Q Consensus 489 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~ 542 (612)
...++.+. ......+..|+...||.+.|.+++|.|++|+.+++|+.|+.+++=
T Consensus 94 ~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 55566554 334466677888889999999999999999999999999999873
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.58 E-value=3.2e-09 Score=118.15 Aligned_cols=168 Identities=18% Similarity=0.153 Sum_probs=104.1
Q ss_pred cceeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCceeeEEEECCeeCChhhh---cccEEEEecCCCcCC
Q 046991 49 KFILKDV-SCEARPGEITAIAGPSGAGKTTLLEIL--AGKISSRKVSGKLLVNDRPMDAEHF---RRISGYVTQDDALFP 122 (612)
Q Consensus 49 ~~iL~~v-s~~i~~Ge~~aIlG~nGsGKTTLL~~L--~G~~~~~~~~G~I~~~g~~~~~~~~---~~~i~yv~Q~~~l~~ 122 (612)
.+-|+.+ .+=+.+|..+.|.||+|||||||..-. .|..+. .+.-+++..++. ++++ .+..|+-.++..--
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~--ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~- 82 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF--DEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDE- 82 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhc-
Confidence 3346664 567999999999999999999999866 455432 234455544432 2222 22344433321100
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHH--HHHhhCCCEEEEe
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIG--VDLVHDPAVVLID 200 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia--~~L~~~p~lllLD 200 (612)
+++.+ +... +. .....+++.+++++..+.... .+|+|++|||.|+ .+|..+|+..
T Consensus 83 -----g~l~~---~~~~--~~----~~~~~~~~~~~l~~~l~~i~~------~ls~g~~qRVvIDSl~aL~~~~~~~--- 139 (484)
T TIGR02655 83 -----GKLFI---LDAS--PD----PEGQDVVGGFDLSALIERINY------AIRKYKAKRVSIDSVTAVFQQYDAV--- 139 (484)
T ss_pred -----CceEE---EecC--ch----hccccccccCCHHHHHHHHHH------HHHHhCCcEEEEeehhHhhhhcCch---
Confidence 00000 0000 00 011124556677666666665 8999999999999 6666665543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH-------H-HhccCeEEEEc
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR-------I-LELFDRLVLLS 251 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~-------i-~~~~D~v~lL~ 251 (612)
...+..+.++++.+++ .|.|+|+++|+++.. + ..++|.|+.|+
T Consensus 140 -------~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -------SVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -------HHHHHHHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999988864 699999999987520 1 45789999986
No 473
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=8.9e-08 Score=102.72 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=55.4
Q ss_pred CccChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 174 CGISGGERRRASIGVDLVH---------DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~---------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|.+. |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 4789999999999999999 99999999999999999999999999753 669999999975
No 474
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.53 E-value=2.6e-07 Score=100.37 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=65.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+...++.++++..+. .+..+++.++ .+.+||.++|+||||+|||||+++|+++.++ ..|.
T Consensus 136 ~p~~~~r~~v~~~l~-----------------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p--d~gv 195 (450)
T PRK06002 136 APPAMTRARVETGLR-----------------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF--DTVV 195 (450)
T ss_pred CCCCeEeecceEEcC-----------------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC--Ceee
Confidence 444566777766652 3467888886 8999999999999999999999999999876 6799
Q ss_pred EEECC---eeCCh-------hhhcccEEEEecCCC
Q 046991 95 LLVND---RPMDA-------EHFRRISGYVTQDDA 119 (612)
Q Consensus 95 I~~~g---~~~~~-------~~~~~~i~yv~Q~~~ 119 (612)
|.+.| +++.. ...++.+++|+|.+.
T Consensus 196 v~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 196 IALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred eeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 88865 44321 123467999999875
No 475
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.51 E-value=5.2e-07 Score=96.17 Aligned_cols=124 Identities=23% Similarity=0.432 Sum_probs=77.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRL 138 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 138 (612)
..++.++.|.||+||||||+++.|.+.+.. ...|.|...+.++... .....+.+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~-~~~~~~~i~q---------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYV-HRNKRSLINQ---------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhh-ccCccceEEc----------------------
Confidence 357889999999999999999999987653 2346665544332110 0000000000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 046991 139 TAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLL 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L 218 (612)
..+| .. ..+ -.-+++.+|-.+|+++++||+. |+.++...++
T Consensus 175 --------------------------~evg-~~---~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~-- 215 (343)
T TIGR01420 175 --------------------------REVG-LD---TLS----FANALRAALREDPDVILIGEMR---DLETVELALT-- 215 (343)
T ss_pred --------------------------cccC-CC---CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH--
Confidence 0011 00 001 1223566788999999999997 8888865554
Q ss_pred HHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 219 KSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 219 ~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.+ ..|.+|+.|+|-.+ .....+|++-|
T Consensus 216 --aa-~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 216 --AA-ETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred --HH-HcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 23 35889999999986 34667877655
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.50 E-value=2.3e-07 Score=109.63 Aligned_cols=139 Identities=21% Similarity=0.294 Sum_probs=86.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
..|=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.-.|||-+..- +.+.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC
Confidence 4567788887 6788999999999999999999875420 01111234332211 11111
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh--hCCCEEEEeCC---C
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV--HDPAVVLIDEP---T 203 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~--~~p~lllLDEP---t 203 (612)
.+ ..++|-. |... .+.|.=+.....++..|- ++++++++||| |
T Consensus 652 ~I-----------------------~triga~---d~i~------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGT 699 (854)
T PRK05399 652 RI-----------------------FTRIGAS---DDLA------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGT 699 (854)
T ss_pred ee-----------------------eeccCcc---cccc------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 11 1112211 1111 267776666666666654 48999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 204 SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 204 sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+.+|..+ ....+++.+.+..+.+++++||.. ++.+++|+
T Consensus 700 s~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 700 STYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 8888444 345566666654468999999994 47777775
No 477
>PRK14079 recF recombination protein F; Provisional
Probab=98.49 E-value=2.8e-07 Score=98.44 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=63.1
Q ss_pred CccChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 174 CGISGGERRRASIGVDLV---------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|-+++.+ +.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~~~-----~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTEAP-----PGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCCCC-----CCC
Confidence 468999999999999998 899999999999999999999999988653 12555555443 478
Q ss_pred CeEEEEcCCeEEEe
Q 046991 245 DRLVLLSNGFVVHN 258 (612)
Q Consensus 245 D~v~lL~~G~iv~~ 258 (612)
|+++.+.+|++.-.
T Consensus 333 ~~~~~~~~~~~~~~ 346 (349)
T PRK14079 333 ALTLRIEAGVFTPE 346 (349)
T ss_pred ceEEEEeccEecCC
Confidence 99999999987543
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.44 E-value=2.1e-07 Score=91.16 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=66.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCH
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRR 143 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 143 (612)
+++|.||||||||||.+.|++.+. .|++ .++++|+.. ..++..+......... ..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~----------------~v~~~D~~~-~~~~~~~~~~~~~~~~--~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKV----------------VIISQDSYY-KDLSHEELEERKNNNY--DHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCe----------------EEEEecccc-cccccccHHHhccCCC--CCCC
Confidence 589999999999999999999872 1222 233333322 2223323222111000 0011
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 144 KQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 144 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
....+...+.++.+...+..+.++- ..|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~------d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVY------DFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEecccc------ccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1122344566666665544444433 677787766554 5688999999999999886
No 479
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.41 E-value=6.8e-07 Score=107.07 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=68.2
Q ss_pred CCCccChHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 172 SNCGISGGERRRASIGVDLV------HD--PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~------~~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
....|||||+-.++||.+|+ .+ -+++||||||..||+.+...++++|..+... +.+|+++||++. +.+.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~ee--l~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEE--LKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHH--HHHh
Confidence 45699999999888877664 35 6999999999999999999999999999754 899999999974 6789
Q ss_pred cCeEEEEcC
Q 046991 244 FDRLVLLSN 252 (612)
Q Consensus 244 ~D~v~lL~~ 252 (612)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999999864
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.33 E-value=3.4e-07 Score=88.23 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-hhhc-ccEEEEecCCCcCCCCCHHHHHHH
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-EHFR-RISGYVTQDDALFPLLTVEETLMC 132 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-~~~~-~~i~yv~Q~~~l~~~lTv~E~l~~ 132 (612)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. ...+ ...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999854 4677776543 1122 234566666544455555555543
No 481
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.33 E-value=1.5e-05 Score=94.39 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=42.8
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCcEEEEEccCCch
Q 046991 189 DLVHDPAVVLIDEPTSGLD-SASALHVVTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 189 ~L~~~p~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
.+..+|.++++|||...|| +..+..+.+.++++.+ .|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 3456899999999999999 8899999999999865 57799999999863
No 482
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.31 E-value=4.4e-06 Score=85.88 Aligned_cols=162 Identities=18% Similarity=0.165 Sum_probs=86.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhccc-EEEEecCCCcCCCCCH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRI-SGYVTQDDALFPLLTV 126 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~-i~yv~Q~~~l~~~lTv 126 (612)
+.+.|+++.+-+.+|+++.|.|++|+|||||+..++...... ....|.+-..+.+..++.++ .+.....+...+. +
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~-~- 92 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPD-T- 92 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccCHHHHHHHHHHHHhCCCcccCC-c-
Confidence 456799998899999999999999999999999887654221 01233332222221111110 0000000000000 0
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-Cc--ccccccccCCCCCCccChHHHHHHHHHHHHh--hCCCEEEEeC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELG-LD--HVASSRIGGGSSNCGISGGERRRASIGVDLV--HDPAVVLIDE 201 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg-L~--~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~--~~p~lllLDE 201 (612)
......++++++++.+. .. ...+. .+ ..+ ..+-+..++.++ .+|+++++|.
T Consensus 93 ---------------~~~~~~~~~~~~~~~~~~~~~l~i~d~-~~------~~~--~~~i~~~i~~~~~~~~~~~vvID~ 148 (271)
T cd01122 93 ---------------VFIYTLEEFDAAFDEFEGTGRLFMYDS-FG------EYS--MDSVLEKVRYMAVSHGIQHIIIDN 148 (271)
T ss_pred ---------------cccccHHHHHHHHHHhcCCCcEEEEcC-CC------ccC--HHHHHHHHHHHHhcCCceEEEECC
Confidence 00011122333333331 11 11111 11 112 233445555554 4799999999
Q ss_pred CCCCCCH-------H-HHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 202 PTSGLDS-------A-SALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 202 PtsgLD~-------~-~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
.+.-.+. . ....++..|++++++.+.||++++|-.
T Consensus 149 l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 149 LSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 8764432 1 245677889999998999999999854
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.29 E-value=1.9e-06 Score=105.70 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=90.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCS 133 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 133 (612)
-+++..+++++++|.|++|+|||||++.+++.... ..+|.+++++..+... .. .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hh--hcccccccc-------cchhH-
Confidence 35677889999999999999999999999887754 3579998876322110 00 010010000 00000
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 046991 134 ALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALH 213 (612)
Q Consensus 134 ~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 213 (612)
...++.+.++++..++ .+. .+ ++.|+| |..++-+++||+- |.. .
T Consensus 266 ----------~l~~~~l~~il~~~~~------~~~------~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 ----------HLQRAFLSEILDKKDI------KIY------HL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred ----------HHHHHHHHHHhCCCCc------ccC------CH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 0112233444443333 121 22 566666 3355667789984 433 3
Q ss_pred HHHHHHHHHH--cCCcEEEEEccCCchHHHhc-cCeEEEEcCCeEEEecChhhHHHHHHhCCC
Q 046991 214 VVTLLKSMVV--NQGKTIILTIHQPGFRILEL-FDRLVLLSNGFVVHNGTLNHLEERLKSAGH 273 (612)
Q Consensus 214 i~~~L~~l~~--~~g~tii~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 273 (612)
.++.|+...+ ..|.+||+|||+... +... +|+++-+.. =+.++..+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 3444444322 247899999999863 3333 576655431 123456666665444
No 484
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.29 E-value=0.00038 Score=70.48 Aligned_cols=219 Identities=14% Similarity=0.148 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhC---CCCCCChhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 046991 337 LILGQRFCYNIFRTNQLFATRVIQALVAGFVLGTIYLK---VGNNTGQVALQTRIGFFAFSLTFLLSSTTEGLPIFLQER 413 (612)
Q Consensus 337 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~ll~G~~f~~---~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~er 413 (612)
+.+.||+++.++|.|..+..-.+..++.|+.. ..+.+ ..+ .+..+.+.-.+..-+ .+... +|.. --
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~-~~~~~~~~~f~~~~~--~~~~~-----~p~l--~~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILD-YGYADLTPFFSLAPW--VFLFL-----IPAI--TM 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHh-cCcchHHHHHHHHHH--HHHHH-----HHHH--HH
Confidence 46789999999999998877766666666442 22211 111 012222221111111 11111 1111 12
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccccc---cchhHHHHHHHHHHHHHHH
Q 046991 414 RILMRETSRGAY--------RASSYVLSNTLIFIPFLLMVGL---LFTTPVYWLIGLR---RQVDGFLFFSLVVWMVLLM 479 (612)
Q Consensus 414 ~v~~rE~~~~~Y--------~~~~y~la~~l~~lp~~~~~~~---i~~~i~Y~m~gl~---~~~~~f~~f~~~~~l~~~~ 479 (612)
..+.+||++|.. +++.+.++|.+.-.-...+..+ ++....++ .|.+ .+...++...+..++...+
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSV 149 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHH
Confidence 345666666643 4678899999987655443332 12222222 1221 2444555444455566667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhhhhccChhhHHHHHHHHHHhCCCCCcccccc
Q 046991 480 SNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKI--PDYWIFMHYLSMFKYPFECFLINEYGGEQGKTRCLE 557 (612)
Q Consensus 480 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~Wl~yisp~~ya~e~l~~nef~~~~~~~~C~~ 557 (612)
..++|.++|++..+...|..++.... +.++.|+.. ..++ |++.+|+.|+||..|-.+.. .| .
T Consensus 150 ~~aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g-~------- 213 (240)
T TIGR03518 150 YTAIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----RG-V------- 213 (240)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----cC-c-------
Confidence 78999999999999887765443332 222223211 2333 78899999999977743322 11 0
Q ss_pred ccCCccccchhHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 046991 558 FEEGECSLYGNGFLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWC 605 (612)
Q Consensus 558 ~~~~~c~~~g~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~ 605 (612)
. .|.++...+.+.+.+..++...++.
T Consensus 214 -------i---------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 214 -------I---------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -------c---------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0456777777777777777766643
No 485
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.29 E-value=9.9e-07 Score=109.07 Aligned_cols=59 Identities=29% Similarity=0.505 Sum_probs=52.0
Q ss_pred CccChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 174 CGISGGERRRAS----IGVD--------LVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 174 ~~LSgGerqRv~----ia~~--------L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
.+||||||||+. +|++ +..+|++++|||||+|||+.++..+++++.++ |.++|++||..
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 589999999996 5644 55899999999999999999999999999886 67899999874
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=2.1e-06 Score=91.92 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=70.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHH
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLM 131 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 131 (612)
++.+.-.+++|++++|+|+||+|||||+|.|+|...+ ..|+|.+++..-......+.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~--~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ--KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc--ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 3444455778999999999999999999999999876 689999987543223345678999998877764 4444444
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCcccccc
Q 046991 132 CSALLRLTAGRRKQAASRVRGLLKELGLDHVASS 165 (612)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 165 (612)
+.. ....-........++.+.+...+|.+.
T Consensus 262 l~~----~~~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 262 LWD----AEDGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred ccC----chhhHHHhHHHHHHHHccCCCCCCCCC
Confidence 321 000011122334556666666666543
No 487
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=0.0015 Score=67.01 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=133.4
Q ss_pred cHHHHHHHHHHHHHHHHhcChHH-----HHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHH-Hh-
Q 046991 331 SHVQEVLILGQRFCYNIFRTNQL-----FATRVIQALVAGFVLGTIYLKVGNNTGQVALQTRIGFFAFSLTFLLSS-TT- 403 (612)
Q Consensus 331 ~~~~q~~~l~~R~~~~~~Rd~~~-----~~~r~~~~~~~~ll~G~~f~~~~~~~~~~~~~~~~g~~f~~~~~~~~~-~~- 403 (612)
..++.+..|.+|+.+..+|+... +..=+++.++++++.|.++-.-+. + --..--.|.+.+. +++ +.
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~--~-~~~~l~~G~~~w~----f~~~~i~ 87 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL--N-FLAYLLAGLILWF----FFSEAIS 87 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc--c-hHHHHHHHHHHHH----HHHHHHH
Confidence 34666788899999999998753 334456666666666666654322 1 1111122222111 111 11
Q ss_pred hhHHHHHHhhHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 046991 404 EGLPIFLQERRILMRETSRGAY-RASSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRQVDGFLFFSLVVWMVLLMSNS 482 (612)
Q Consensus 404 ~~~~~~~~er~v~~rE~~~~~Y-~~~~y~la~~l~~lp~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~~ 482 (612)
.+...+.+...++.+ .+ ++..+.+++++.++-...+..++....+-+.-+.. ..++......+.+..+.+.+
T Consensus 88 ~~~~s~~~n~~li~k-----~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g 160 (263)
T COG1682 88 EGAGSVVANAALIKK-----INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVG 160 (263)
T ss_pred hHHHHhhhhHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHH
Confidence 223344444444433 33 78889999999988777776655554444443333 34455555566677777788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhhHHHHHHHHHHhCCC
Q 046991 483 FVACFSALVPNFIMGTSVISGLMGSFFLFSGYFISKDKIPDYWIFMHYLSMFKYPFECFLINEYGGE 549 (612)
Q Consensus 483 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yisp~~ya~e~l~~nef~~~ 549 (612)
++.++|+++.-..--.-+.+.++-+++..+|.+-+.+.+|+-++|+.++||+.|-.|.+=..-+++.
T Consensus 161 ~~l~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~ 227 (263)
T COG1682 161 LGLILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD 227 (263)
T ss_pred HHHHHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC
Confidence 8899888877665445555666777888999999999999999999999999999998866555543
No 488
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.19 E-value=2.5e-06 Score=74.67 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=48.7
Q ss_pred ccccccc--CCccccchhHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 046991 553 TRCLEFE--EGECSLYGNGFLK-QQDLRESQKWSNLAVMLSFIIGYRVLCFFILWCRCYRA 610 (612)
Q Consensus 553 ~~C~~~~--~~~c~~~g~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~ 610 (612)
..|...+ ++...++|++||+ .||+..+|+|||+||+++|+++|.++.++++.+....+
T Consensus 17 q~C~~~Ga~~G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 17 QVCAVVGAQPGSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred CccCCCCCCCCccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4587544 3556689999997 69999999999999999999999999999998766543
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.17 E-value=5.2e-06 Score=91.54 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=46.2
Q ss_pred hCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHcCCcEEEEEccCCch-------HHHhccCeEEEEcCCe
Q 046991 192 HDPAVVLIDEPTSGL---------DSASALHVVTLLKSMVVNQGKTIILTIHQPGF-------RILELFDRLVLLSNGF 254 (612)
Q Consensus 192 ~~p~lllLDEPtsgL---------D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~-------~i~~~~D~v~lL~~G~ 254 (612)
.+|+++++|.-++=. +.....+++..|.+++++.|.|++++.|.... .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999776521 12345566777888888899999999996441 1567899999998654
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.16 E-value=2.5e-06 Score=67.18 Aligned_cols=37 Identities=32% Similarity=0.673 Sum_probs=30.0
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 52 LKDVSCEARP-GEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 52 L~~vs~~i~~-Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
.++-++++.+ |+++.|.||||||||||+++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456667775 579999999999999999999877644
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.15 E-value=7.3e-07 Score=86.60 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCc-ccccccccCCCCCCccChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 046991 149 RVRGLLKELGLD-HVASSRIGGGSSNCGISGGERRRAS--IGVDLVH-DPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224 (612)
Q Consensus 149 ~v~~~l~~lgL~-~~~~~~vg~~~~~~~LSgGerqRv~--ia~~L~~-~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 224 (612)
.+.+.++..++. -...+++. .+++||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~D------l~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKAD------KLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcc------cCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 455666666664 23344554 68999999977 5455433 3444 399999999999999999988753
No 492
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.14 E-value=0.00091 Score=68.43 Aligned_cols=164 Identities=21% Similarity=0.311 Sum_probs=91.5
Q ss_pred HHHHHHhcCC--------CCChHHHHHHHHHHHHHHHH---HHHHH-Hhh-hhhh-ccccccchhHHHHHHHHHHHHHH-
Q 046991 414 RILMRETSRG--------AYRASSYVLSNTLIFIPFLL---MVGLL-FTT-PVYW-LIGLRRQVDGFLFFSLVVWMVLL- 478 (612)
Q Consensus 414 ~v~~rE~~~~--------~Y~~~~y~la~~l~~lp~~~---~~~~i-~~~-i~Y~-m~gl~~~~~~f~~f~~~~~l~~~- 478 (612)
..+-+|+++| =+++..++++|.++.+...+ +...+ +.+ ..++ ..|.+.+...++...+......+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3556777666 26788999999999887732 21111 111 1122 23445555555554444443333
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc-CCCCccchh-----hhhhccChhhHHHHHHHHHHhCCCC
Q 046991 479 --MSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFI-SKDKIPDYW-----IFMHYLSMFKYPFECFLINEYGGEQ 550 (612)
Q Consensus 479 --~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i-~~~~ip~~~-----~Wl~yisp~~ya~e~l~~nef~~~~ 550 (612)
+..+++.++|+++++...|..+...+............ ..++. .+. ..+.+++|..+ ++.+......+..
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 245 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANS-EALPWVISPNLSFLSPFSP-FNLLIGSILGGGF 245 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc
Confidence 45899999999999888777766655444433222222 11111 122 23466666553 2222222221110
Q ss_pred CccccccccCCccccchhHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 046991 551 GKTRCLEFEEGECSLYGNGFLKQQDLRESQKWSNLAVMLSFIIGYRVLCFFILWC 605 (612)
Q Consensus 551 ~~~~C~~~~~~~c~~~g~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~L~~ 605 (612)
. ....|.++++++++.+++..+++..+++
T Consensus 246 -~-------------------------~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 246 -V-------------------------WLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred -c-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0345788899999999999999966544
No 493
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.14 E-value=5.2e-06 Score=77.46 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046991 148 SRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDL-----VHDPAVVLIDEPTSGLDSASALHVVTLLKSM 221 (612)
Q Consensus 148 ~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L-----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l 221 (612)
.++.+.++..+..- ...++.. .++++++++.....+. ...|+++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D------~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKAD------KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchh------cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34556666665431 1233443 5788888877666553 3345555 99999999999999988764
No 494
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.09 E-value=4e-05 Score=90.87 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=41.4
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 190 LVHDPAVVLIDEPTSGLD-SASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 190 L~~~p~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
+-.+|+++++|||+.+|| +..+..+.+.++.+.+ .|.+++++||+++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHH
Confidence 345899999999999999 7889999999999865 5789999999986
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.09 E-value=4.7e-06 Score=89.12 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=46.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCce-eeEEEECCeeCC--hhhhcccEEEEecCCCcCCCCCHHHHHHH
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKV-SGKLLVNDRPMD--AEHFRRISGYVTQDDALFPLLTVEETLMC 132 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~-~G~I~~~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 132 (612)
++|.+++|.||+||||||+|++|.+.+.+.+. .+.|...+.|+. .+..+...+.+.|...--...+-.+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH
Confidence 58899999999999999999999998743222 346655555543 12333445778886532122345555543
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.08 E-value=3.8e-06 Score=81.58 Aligned_cols=37 Identities=38% Similarity=0.652 Sum_probs=31.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD 103 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~ 103 (612)
|++++|+||||||||||++.|++...+ ++.+++..++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECC
Confidence 789999999999999999999998743 5677776654
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.08 E-value=9e-06 Score=93.03 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=72.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCC------ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHH
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKISSR------KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSA 134 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~------~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 134 (612)
..+.++|.||||+|||||++++.+..++. ...+-|.+||..+... .+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d-~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD-PRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC-HHH----------------H-hHHhcC-
Confidence 34579999999999999999999887431 0123355555433100 000 0 011111
Q ss_pred HccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 046991 135 LLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHV 214 (612)
Q Consensus 135 ~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 214 (612)
. ..+...+.+.+.++..|+.+..+..+. .+||| +||||| +..||+..+..+
T Consensus 235 -----~-~~~~~~~~a~~~l~~~gl~~~~~g~v~------~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 -----S-VHDPIYQGARRDLAETGVPEPKTGLVT------DAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -----C-ccHHHHHHHHHHHHHcCCCchhcCchh------hcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 0 011222345566888898877766665 78888 999999 799999999999
Q ss_pred HHHHHH
Q 046991 215 VTLLKS 220 (612)
Q Consensus 215 ~~~L~~ 220 (612)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 988875
No 498
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.07 E-value=7.5e-06 Score=69.95 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=36.0
Q ss_pred ccChHHH-HHHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046991 175 GISGGER-RRASIGVDL------VH------DPAVVLIDEPTSGLDSASALHVVTLLKS 220 (612)
Q Consensus 175 ~LSgGer-qRv~ia~~L------~~------~p~lllLDEPtsgLD~~~~~~i~~~L~~ 220 (612)
++||||| ..+.++.++ -. .|++++||||+++||+.....++++|++
T Consensus 32 ~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 32 TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 8999999 444444432 22 3799999999999999999999999874
No 499
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.06 E-value=8.2e-06 Score=88.91 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=71.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECC---eeCCh---hhhc---ccEEEE----
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND---RPMDA---EHFR---RISGYV---- 114 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g---~~~~~---~~~~---~~i~yv---- 114 (612)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+. ...|.|.+.| +++.. +.++ ...+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 45689998 99999999999999999999999999998843 2447777755 43321 1111 234445
Q ss_pred -ecCCC--cCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCc
Q 046991 115 -TQDDA--LFPLLTVEETLMCSALLRLTAG-RRKQAASRVRGLLKELGLD 160 (612)
Q Consensus 115 -~Q~~~--l~~~lTv~E~l~~~~~l~~~~~-~~~~~~~~v~~~l~~lgL~ 160 (612)
+|++. +.+.+ +...+.-..+...... ...+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 77752 33333 3333332222211111 2356678899999999994
No 500
>PRK08149 ATP synthase SpaL; Validated
Probab=98.05 E-value=8.2e-06 Score=88.54 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=101.0
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCeeCCh---h----hhcccEEEEecCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRPMDA---E----HFRRISGYVTQDD 118 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~~~~---~----~~~~~i~yv~Q~~ 118 (612)
.+..+++++ +.+.+||.++|+|+||+|||||+++|++..++. ..-|.|-.+|+++.. + ...+++++|....
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 345799999 999999999999999999999999999998663 234889999987642 1 1235677877654
Q ss_pred CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc--ccccccCCCCCCccChHHHHHHHHHHHHhhCCCE
Q 046991 119 ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV--ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAV 196 (612)
Q Consensus 119 ~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~--~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~l 196 (612)
.-.+ .+-+.- ......+.|.+...|-+-. .|. |+ |.+-|.--+ -
T Consensus 216 d~p~----~~r~~a-----------~~~a~tiAE~fr~~G~~Vll~~Ds----------lT-----r~A~A~rEi----~ 261 (428)
T PRK08149 216 DFSS----VDRCNA-----------ALVATTVAEYFRDQGKRVVLFIDS----------MT-----RYARALRDV----A 261 (428)
T ss_pred CCCH----HHHHhH-----------HHHHHHHHHHHHHcCCCEEEEccc----------hH-----HHHHHHHHh----H
Confidence 3322 111110 0001112223333342100 111 10 111110000 0
Q ss_pred EEEeCCCC--CCCHHHHHHHHHHHHHHHHc--CCcEEEEEccCCchHHH-hccCeEEEEcCCeEEEec
Q 046991 197 VLIDEPTS--GLDSASALHVVTLLKSMVVN--QGKTIILTIHQPGFRIL-ELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 197 llLDEPts--gLD~~~~~~i~~~L~~l~~~--~g~tii~~~H~~~~~i~-~~~D~v~lL~~G~iv~~G 259 (612)
+.++||-+ |-.+.--..+-+++.+..+. .-.|.+.+..-+..++. -.+|.+.-+-||+++.+-
T Consensus 262 l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr 329 (428)
T PRK08149 262 LAAGELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSR 329 (428)
T ss_pred hhcCCCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcH
Confidence 23456654 66666666666666654322 23466666654433322 357788888899998753
Done!