Query 046991
Match_columns 612
No_of_seqs 428 out of 2546
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4.1E-51 1.4E-55 431.7 29.6 226 15-265 21-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 6.7E-51 2.3E-55 429.8 27.8 219 18-265 4-227 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 1.4E-50 4.7E-55 430.2 29.6 219 18-265 3-222 (381)
4 3tif_A Uncharacterized ABC tra 100.0 1.1E-50 3.9E-55 407.0 27.4 224 18-265 1-233 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-50 5.7E-55 414.2 27.9 221 17-265 6-232 (275)
6 2olj_A Amino acid ABC transpor 100.0 3.8E-50 1.3E-54 409.2 30.1 218 18-265 24-247 (263)
7 1b0u_A Histidine permease; ABC 100.0 4E-50 1.4E-54 409.4 29.0 218 18-265 6-241 (262)
8 4g1u_C Hemin import ATP-bindin 100.0 2.4E-50 8.3E-55 411.6 25.7 218 16-264 9-235 (266)
9 2pcj_A ABC transporter, lipopr 100.0 9.4E-50 3.2E-54 397.5 27.9 212 18-260 4-222 (224)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-49 4.6E-54 403.8 29.0 222 15-266 12-235 (256)
11 1z47_A CYSA, putative ABC-tran 100.0 1.1E-49 3.7E-54 420.7 29.0 223 15-265 11-234 (355)
12 1g6h_A High-affinity branched- 100.0 6.2E-50 2.1E-54 407.0 25.5 219 17-263 6-239 (257)
13 2yyz_A Sugar ABC transporter, 100.0 1.4E-49 4.9E-54 420.7 27.7 219 18-265 3-222 (359)
14 2it1_A 362AA long hypothetical 100.0 1.7E-49 5.8E-54 420.6 28.0 219 18-265 3-222 (362)
15 1g29_1 MALK, maltose transport 100.0 3.4E-49 1.2E-53 420.4 29.2 219 18-265 3-228 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-49 5.7E-54 420.2 25.4 219 18-265 3-229 (353)
17 1ji0_A ABC transporter; ATP bi 100.0 3.4E-49 1.2E-53 397.5 25.9 218 17-265 5-227 (240)
18 1v43_A Sugar-binding transport 100.0 3.4E-49 1.2E-53 419.8 27.2 219 18-265 11-230 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.5E-49 1.9E-53 414.9 25.9 215 18-265 1-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 5.1E-49 1.7E-53 395.9 23.5 214 18-265 1-215 (240)
21 2yz2_A Putative ABC transporte 100.0 2E-48 6.7E-53 397.8 26.0 223 18-266 2-227 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-48 5.8E-53 400.5 22.8 220 17-264 20-250 (279)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-47 3.9E-52 388.7 25.2 218 18-263 3-230 (250)
24 2zu0_C Probable ATP-dependent 100.0 5.9E-47 2E-51 387.0 29.5 230 18-273 20-260 (267)
25 2nq2_C Hypothetical ABC transp 100.0 6.2E-47 2.1E-51 383.8 26.8 209 18-264 4-215 (253)
26 2ixe_A Antigen peptide transpo 100.0 2.4E-47 8.2E-52 390.6 21.6 220 17-265 15-244 (271)
27 2qi9_C Vitamin B12 import ATP- 100.0 1.6E-46 5.6E-51 379.6 24.8 197 50-264 14-220 (249)
28 3nh6_A ATP-binding cassette SU 100.0 1.2E-46 4.2E-51 390.6 23.7 217 16-266 51-277 (306)
29 2ff7_A Alpha-hemolysin translo 100.0 1.3E-46 4.4E-51 380.2 22.5 220 15-265 4-231 (247)
30 1sgw_A Putative ABC transporte 100.0 1.6E-46 5.5E-51 371.1 17.0 204 15-255 7-210 (214)
31 2pjz_A Hypothetical protein ST 100.0 1.1E-45 3.7E-50 376.4 21.9 211 18-265 1-214 (263)
32 1mv5_A LMRA, multidrug resista 100.0 2.8E-46 9.4E-51 377.1 17.0 217 18-265 1-225 (243)
33 2ghi_A Transport protein; mult 100.0 1.1E-45 3.9E-50 376.1 20.5 218 15-265 14-241 (260)
34 3gd7_A Fusion complex of cysti 100.0 1.1E-44 3.7E-49 387.5 17.9 219 14-265 15-241 (390)
35 2pze_A Cystic fibrosis transme 100.0 8.7E-44 3E-48 355.6 21.0 204 18-265 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.4E-43 4.8E-48 355.9 20.7 210 18-265 3-216 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 3.6E-43 1.2E-47 396.7 22.5 217 17-265 340-566 (582)
38 3b60_A Lipid A export ATP-bind 100.0 3.6E-43 1.2E-47 396.8 21.8 218 17-266 340-567 (582)
39 4a82_A Cystic fibrosis transme 100.0 4.1E-43 1.4E-47 395.8 22.1 218 16-266 337-564 (578)
40 2yl4_A ATP-binding cassette SU 100.0 6.5E-43 2.2E-47 395.6 22.6 218 19-265 342-569 (595)
41 3qf4_A ABC transporter, ATP-bi 100.0 8.3E-43 2.9E-47 393.7 21.9 218 16-266 339-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 1.1E-42 3.8E-47 393.7 19.1 216 17-266 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 4.1E-41 1.4E-45 347.2 18.7 188 49-265 51-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 2.9E-41 9.8E-46 411.5 19.5 220 17-266 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 2.3E-40 7.7E-45 403.6 22.0 217 17-265 414-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 4.5E-39 1.5E-43 391.3 22.7 218 17-266 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 9.7E-39 3.3E-43 388.3 22.8 220 17-266 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2.3E-38 8E-43 357.0 23.0 208 15-266 354-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.4E-38 1.2E-42 351.9 20.4 207 16-266 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-37 7.8E-42 344.6 21.6 208 15-264 266-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 3.1E-36 1.1E-40 339.3 18.4 193 49-266 360-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 6.7E-35 2.3E-39 339.9 25.2 204 12-266 429-635 (986)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-36 9.2E-41 336.6 11.8 182 50-253 36-234 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 5.7E-36 1.9E-40 343.3 14.2 208 48-265 30-297 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 3.8E-36 1.3E-40 339.1 11.6 185 47-253 102-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 7.1E-35 2.4E-39 339.7 15.5 208 16-260 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.2E-33 7.7E-38 321.8 18.9 197 49-265 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.1E-33 1.7E-37 313.1 9.9 188 50-257 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-33 1.2E-37 310.9 7.9 175 58-255 21-215 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 9.9E-31 3.4E-35 302.3 20.7 198 51-265 512-826 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 9.7E-31 3.3E-35 302.7 19.4 198 51-265 639-941 (972)
62 3pih_A Uvrabc system protein A 100.0 1.2E-30 4E-35 304.0 18.8 200 49-265 597-901 (916)
63 2ygr_A Uvrabc system protein A 100.0 4.5E-30 1.5E-34 298.2 16.6 199 51-266 657-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3E-32 1E-36 297.8 -7.9 185 53-264 129-336 (460)
65 4aby_A DNA repair protein RECN 100.0 8.7E-29 3E-33 267.7 19.2 205 49-259 48-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.4E-26 2.2E-30 241.5 17.2 81 174-257 278-364 (365)
67 3b85_A Phosphate starvation-in 99.9 2.7E-29 9.1E-34 246.9 -10.4 144 45-237 9-159 (208)
68 1e69_A Chromosome segregation 99.9 9.6E-26 3.3E-30 236.2 12.0 86 174-263 218-310 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 8.5E-28 2.9E-32 258.5 -10.3 178 48-253 35-254 (413)
70 4gp7_A Metallophosphoesterase; 99.9 8.1E-26 2.8E-30 215.1 3.8 143 54-237 1-160 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 1.4E-28 4.9E-33 241.2 -16.1 183 47-252 7-203 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 5.3E-25 1.8E-29 211.1 4.5 145 64-257 2-159 (178)
73 2v9p_A Replication protein E1; 99.9 9.7E-28 3.3E-32 248.1 -20.4 157 49-270 113-270 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 4.4E-25 1.5E-29 228.9 -1.9 175 52-255 90-284 (302)
75 3sop_A Neuronal-specific septi 99.9 5.6E-25 1.9E-29 224.7 -6.3 148 64-237 4-151 (270)
76 2dpy_A FLII, flagellum-specifi 99.9 4.7E-25 1.6E-29 239.7 -8.8 179 48-264 144-342 (438)
77 2og2_A Putative signal recogni 99.9 8E-24 2.7E-28 223.8 -0.3 174 53-255 148-341 (359)
78 2vf7_A UVRA2, excinuclease ABC 99.9 1.8E-21 6.1E-26 225.2 16.0 109 146-264 356-473 (842)
79 1cr0_A DNA primase/helicase; R 99.9 8.5E-23 2.9E-27 210.8 3.6 187 48-255 21-237 (296)
80 1z6g_A Guanylate kinase; struc 99.8 1.1E-25 3.9E-30 222.6 -20.5 153 49-223 10-175 (218)
81 2jeo_A Uridine-cytidine kinase 99.8 1.8E-22 6.1E-27 203.0 1.3 179 46-267 9-188 (245)
82 2o5v_A DNA replication and rep 99.8 8E-21 2.7E-25 201.0 13.8 81 175-264 265-354 (359)
83 2pt7_A CAG-ALFA; ATPase, prote 99.8 2E-22 6.9E-27 211.6 0.9 132 51-255 160-292 (330)
84 2obl_A ESCN; ATPase, hydrolase 99.8 1.9E-22 6.3E-27 213.0 -0.2 178 48-264 58-253 (347)
85 3aez_A Pantothenate kinase; tr 99.8 5.3E-24 1.8E-28 221.8 -12.6 123 59-208 87-209 (312)
86 3qkt_A DNA double-strand break 99.8 3.3E-20 1.1E-24 195.5 15.7 75 174-251 247-327 (339)
87 3pih_A Uvrabc system protein A 99.8 3.1E-21 1E-25 224.9 8.1 161 78-265 384-559 (916)
88 4ad8_A DNA repair protein RECN 99.8 1.9E-20 6.7E-25 208.2 13.0 77 173-253 394-473 (517)
89 2o8b_B DNA mismatch repair pro 99.8 1.9E-21 6.5E-26 230.2 2.3 175 17-263 749-939 (1022)
90 1tf7_A KAIC; homohexamer, hexa 99.8 9.8E-23 3.3E-27 227.2 -10.7 170 47-253 23-210 (525)
91 1tf7_A KAIC; homohexamer, hexa 99.8 4.9E-20 1.7E-24 205.4 9.3 155 56-254 275-444 (525)
92 3thx_A DNA mismatch repair pro 99.8 1.9E-20 6.4E-25 219.2 5.7 154 47-264 647-811 (934)
93 2r6f_A Excinuclease ABC subuni 99.8 2.4E-19 8.1E-24 207.9 13.9 134 122-265 450-599 (972)
94 2ehv_A Hypothetical protein PH 99.8 2.6E-21 8.7E-26 193.5 -4.6 163 57-251 25-206 (251)
95 2ygr_A Uvrabc system protein A 99.8 8.6E-19 2.9E-23 203.9 13.2 136 121-266 466-617 (993)
96 2qnr_A Septin-2, protein NEDD5 99.8 3.5E-21 1.2E-25 199.6 -6.1 161 44-237 6-168 (301)
97 4a74_A DNA repair and recombin 99.8 2.7E-20 9.1E-25 183.8 -0.3 154 57-254 20-201 (231)
98 2eyu_A Twitching motility prot 99.8 1.1E-19 3.6E-24 184.7 3.1 132 50-252 15-147 (261)
99 3thx_B DNA mismatch repair pro 99.8 3.5E-19 1.2E-23 208.0 6.3 157 47-257 658-816 (918)
100 3asz_A Uridine kinase; cytidin 99.7 2.7E-21 9.2E-26 189.2 -10.4 147 59-237 3-162 (211)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.1E-18 1.4E-22 158.0 10.5 79 174-255 56-142 (148)
102 1rj9_A FTSY, signal recognitio 99.7 7.1E-20 2.4E-24 189.9 -4.0 150 61-237 101-259 (304)
103 1w1w_A Structural maintenance 99.7 1.3E-17 4.6E-22 181.1 13.1 74 175-251 333-410 (430)
104 1ewq_A DNA mismatch repair pro 99.7 6.1E-19 2.1E-23 203.0 1.0 135 47-244 564-704 (765)
105 2w0m_A SSO2452; RECA, SSPF, un 99.7 7.4E-19 2.5E-23 173.3 0.4 170 48-253 8-192 (235)
106 3szr_A Interferon-induced GTP- 99.7 9.7E-20 3.3E-24 206.0 -8.0 169 57-264 43-235 (608)
107 1nlf_A Regulatory protein REPA 99.7 2.1E-17 7.1E-22 169.1 9.1 152 58-237 26-182 (279)
108 1wb9_A DNA mismatch repair pro 99.7 2.7E-18 9.2E-23 198.8 2.8 159 47-260 593-752 (800)
109 1pzn_A RAD51, DNA repair and r 99.7 5.8E-19 2E-23 186.6 -2.8 167 50-260 118-309 (349)
110 2i3b_A HCR-ntpase, human cance 99.7 5.2E-19 1.8E-23 170.9 -7.0 157 62-259 1-169 (189)
111 1pui_A ENGB, probable GTP-bind 99.7 1.2E-18 4.1E-23 169.5 -6.0 173 18-224 3-199 (210)
112 2qag_C Septin-7; cell cycle, c 99.6 9.1E-18 3.1E-22 181.0 -2.8 164 18-237 11-178 (418)
113 3jvv_A Twitching mobility prot 99.6 1E-16 3.4E-21 169.6 4.1 128 58-253 119-246 (356)
114 1s96_A Guanylate kinase, GMP k 99.6 2.7E-17 9.2E-22 162.6 -1.1 150 56-269 10-163 (219)
115 2cvh_A DNA repair and recombin 99.6 5.9E-16 2E-20 151.5 6.3 156 49-253 6-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.6 2.6E-19 8.8E-24 172.2 -18.9 172 62-264 2-182 (189)
117 1zp6_A Hypothetical protein AT 99.6 8.4E-18 2.9E-22 161.4 -10.7 152 58-234 5-159 (191)
118 1lw7_A Transcriptional regulat 99.5 2.8E-18 9.5E-23 182.6 -17.1 164 51-251 157-342 (365)
119 3kta_B Chromosome segregation 99.5 1.3E-14 4.5E-19 137.9 10.0 77 174-254 63-145 (173)
120 2qag_B Septin-6, protein NEDD5 99.5 3.7E-16 1.3E-20 167.9 -1.1 179 45-235 24-218 (427)
121 2bbw_A Adenylate kinase 4, AK4 99.5 3.1E-17 1.1E-21 164.6 -9.6 146 61-224 26-199 (246)
122 2ewv_A Twitching motility prot 99.5 1.4E-15 4.9E-20 162.0 2.4 131 50-251 126-257 (372)
123 2rcn_A Probable GTPase ENGC; Y 99.5 1E-14 3.4E-19 153.8 6.2 122 51-190 205-328 (358)
124 1nij_A Hypothetical protein YJ 99.5 1.3E-17 4.4E-22 174.2 -16.2 162 63-245 5-197 (318)
125 2gza_A Type IV secretion syste 99.5 4.7E-15 1.6E-19 157.4 2.5 138 51-254 164-303 (361)
126 1htw_A HI0065; nucleotide-bind 99.5 6E-16 2.1E-20 145.1 -4.0 83 44-132 15-97 (158)
127 1n0w_A DNA repair protein RAD5 99.5 4.2E-14 1.4E-18 140.3 8.8 155 51-253 12-209 (243)
128 2yhs_A FTSY, cell division pro 99.5 1.5E-15 5E-20 165.4 -3.0 154 52-234 283-447 (503)
129 2f1r_A Molybdopterin-guanine d 99.5 3.2E-16 1.1E-20 148.9 -7.4 139 63-226 3-164 (171)
130 3e70_C DPA, signal recognition 99.5 3.9E-15 1.3E-19 155.7 -1.2 164 59-255 126-306 (328)
131 2qm8_A GTPase/ATPase; G protei 99.4 2.3E-16 8E-21 165.9 -13.1 164 47-223 40-260 (337)
132 3auy_A DNA double-strand break 99.4 9.7E-13 3.3E-17 140.1 12.5 74 174-251 279-359 (371)
133 2yv5_A YJEQ protein; hydrolase 99.4 2.1E-14 7.3E-19 148.7 -2.6 121 59-189 162-301 (302)
134 1udx_A The GTP-binding protein 99.4 6.1E-14 2.1E-18 151.1 0.4 168 52-247 147-319 (416)
135 1odf_A YGR205W, hypothetical 3 99.3 4.1E-14 1.4E-18 145.6 -2.3 131 60-210 29-169 (290)
136 3ec2_A DNA replication protein 99.3 1.3E-13 4.3E-18 131.3 0.8 113 56-238 32-145 (180)
137 1p9r_A General secretion pathw 99.3 3.1E-15 1.1E-19 161.3 -12.8 133 48-198 155-314 (418)
138 3lda_A DNA repair protein RAD5 99.3 6E-12 2E-16 134.9 12.3 156 51-254 166-364 (400)
139 2kjq_A DNAA-related protein; s 99.3 1.2E-12 4E-17 121.4 5.8 95 50-237 29-126 (149)
140 1in4_A RUVB, holliday junction 99.3 1.1E-14 3.6E-19 153.0 -9.1 171 45-246 27-211 (334)
141 1sxj_E Activator 1 40 kDa subu 99.3 2.3E-12 8E-17 135.4 7.3 136 65-238 39-176 (354)
142 2oap_1 GSPE-2, type II secreti 99.3 7.9E-15 2.7E-19 162.1 -14.2 177 49-245 247-458 (511)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.1E-14 3.6E-19 155.6 -15.6 171 58-263 16-210 (392)
144 1lvg_A Guanylate kinase, GMP k 99.2 3.8E-15 1.3E-19 144.7 -18.4 153 60-252 2-173 (198)
145 1u0l_A Probable GTPase ENGC; p 99.2 6.2E-13 2.1E-17 137.6 -3.2 103 58-168 165-290 (301)
146 2x8a_A Nuclear valosin-contain 99.2 1.3E-14 4.3E-19 148.3 -17.1 144 47-218 31-190 (274)
147 1t9h_A YLOQ, probable GTPase E 99.2 1.9E-12 6.5E-17 133.8 -1.1 118 57-183 168-303 (307)
148 2r6a_A DNAB helicase, replicat 99.2 1E-11 3.5E-16 135.7 4.5 182 49-255 190-401 (454)
149 3c8u_A Fructokinase; YP_612366 99.2 2.6E-13 8.7E-18 132.5 -7.6 163 59-268 19-183 (208)
150 1sq5_A Pantothenate kinase; P- 99.1 1.4E-12 4.8E-17 135.3 -5.7 84 50-137 49-156 (308)
151 2dr3_A UPF0273 protein PH0284; 99.1 7.3E-12 2.5E-16 124.3 -0.5 61 192-252 127-196 (247)
152 1vma_A Cell division protein F 99.0 1.6E-10 5.4E-15 119.6 5.6 113 55-222 97-212 (306)
153 3lnc_A Guanylate kinase, GMP k 99.0 9.2E-14 3.2E-18 137.8 -19.8 160 48-222 13-177 (231)
154 1ls1_A Signal recognition part 99.0 2E-09 6.7E-14 110.9 11.1 118 53-221 91-209 (295)
155 2zr9_A Protein RECA, recombina 98.9 1.2E-09 4.2E-14 115.1 8.0 155 51-260 48-237 (349)
156 2ius_A DNA translocase FTSK; n 98.9 6E-11 2.1E-15 130.4 -2.2 166 54-237 159-343 (512)
157 2px0_A Flagellar biosynthesis 98.9 1.6E-09 5.5E-14 111.6 7.1 142 60-258 103-247 (296)
158 1iy2_A ATP-dependent metallopr 98.9 1.8E-12 6E-17 132.2 -15.4 125 47-196 60-190 (278)
159 3k1j_A LON protease, ATP-depen 98.9 4.2E-11 1.5E-15 135.4 -6.0 161 47-220 45-227 (604)
160 3tr0_A Guanylate kinase, GMP k 98.9 1.2E-10 4.2E-15 112.4 -2.3 69 56-130 1-72 (205)
161 3euj_A Chromosome partition pr 98.9 4E-10 1.4E-14 123.0 1.4 52 49-103 17-68 (483)
162 1ixz_A ATP-dependent metallopr 98.8 3.1E-12 1.1E-16 128.4 -15.4 129 47-202 36-170 (254)
163 1oix_A RAS-related protein RAB 98.8 6.6E-10 2.2E-14 106.4 0.5 141 64-221 31-189 (191)
164 3hr8_A Protein RECA; alpha and 98.8 3.3E-09 1.1E-13 111.8 4.4 162 50-253 47-230 (356)
165 1qhl_A Protein (cell division 98.7 6E-10 2.1E-14 110.2 -3.6 59 56-117 22-91 (227)
166 3kta_A Chromosome segregation 98.6 2.1E-09 7.2E-14 101.8 -3.1 35 53-88 18-52 (182)
167 2qtf_A Protein HFLX, GTP-bindi 98.6 4.2E-09 1.4E-13 111.6 -1.4 147 61-224 177-354 (364)
168 1svm_A Large T antigen; AAA+ f 98.6 2.3E-10 7.9E-15 121.6 -11.5 145 49-204 156-312 (377)
169 2f9l_A RAB11B, member RAS onco 98.5 3.9E-08 1.3E-12 94.3 4.4 37 184-222 130-166 (199)
170 4eun_A Thermoresistant glucoki 98.5 5E-09 1.7E-13 101.2 -2.8 64 52-121 19-84 (200)
171 4a1f_A DNAB helicase, replicat 98.4 9.9E-08 3.4E-12 99.7 3.6 132 48-234 32-164 (338)
172 2ce7_A Cell division protein F 98.4 1.2E-07 4.1E-12 103.7 3.5 114 50-237 39-165 (476)
173 2xau_A PRE-mRNA-splicing facto 98.3 5.2E-07 1.8E-11 104.6 7.9 72 175-248 190-263 (773)
174 4e22_A Cytidylate kinase; P-lo 98.3 4.9E-08 1.7E-12 98.0 -1.2 64 50-118 18-96 (252)
175 3cr8_A Sulfate adenylyltranfer 98.3 1.7E-08 6E-13 112.2 -5.1 43 58-102 365-409 (552)
176 3nwj_A ATSK2; P loop, shikimat 98.3 5.2E-08 1.8E-12 97.8 -1.3 52 18-86 17-72 (250)
177 2j41_A Guanylate kinase; GMP, 98.3 2.6E-07 8.9E-12 88.8 2.4 32 57-88 1-32 (207)
178 2dhr_A FTSH; AAA+ protein, hex 98.2 6.7E-09 2.3E-13 114.2 -10.9 130 48-204 52-187 (499)
179 1zu4_A FTSY; GTPase, signal re 98.2 2.2E-07 7.6E-12 96.6 0.8 78 52-131 95-185 (320)
180 2e87_A Hypothetical protein PH 98.2 1.6E-06 5.5E-11 91.4 7.4 60 175-237 231-293 (357)
181 1jjv_A Dephospho-COA kinase; P 98.2 3.2E-07 1.1E-11 88.5 1.2 82 176-269 60-142 (206)
182 3a00_A Guanylate kinase, GMP k 98.2 3.4E-07 1.2E-11 87.2 1.1 27 62-88 1-27 (186)
183 3t34_A Dynamin-related protein 98.1 6E-06 2.1E-10 87.0 9.4 58 176-234 155-212 (360)
184 2dy1_A Elongation factor G; tr 98.1 1.3E-06 4.5E-11 99.6 4.2 133 56-238 3-138 (665)
185 3uie_A Adenylyl-sulfate kinase 98.1 1.6E-07 5.6E-12 90.4 -3.2 53 47-102 10-64 (200)
186 3vaa_A Shikimate kinase, SK; s 98.1 1.4E-06 4.9E-11 83.7 3.4 40 47-86 10-49 (199)
187 3bh0_A DNAB-like replicative h 98.1 3.6E-06 1.2E-10 87.2 6.5 134 49-235 55-190 (315)
188 1kgd_A CASK, peripheral plasma 98.0 1.8E-06 6E-11 81.8 2.6 38 60-98 3-40 (180)
189 3b9p_A CG5977-PA, isoform A; A 98.0 3.5E-05 1.2E-09 78.3 12.4 74 177-250 97-186 (297)
190 2z43_A DNA repair and recombin 98.0 2.5E-05 8.6E-10 81.0 11.2 147 51-236 95-258 (324)
191 1v5w_A DMC1, meiotic recombina 98.0 2.1E-05 7.1E-10 82.4 10.4 146 52-237 111-275 (343)
192 1fnn_A CDC6P, cell division co 98.0 2.6E-05 8.9E-10 82.0 10.7 45 192-237 124-170 (389)
193 1knq_A Gluconate kinase; ALFA/ 97.9 4.1E-07 1.4E-11 85.3 -3.1 37 60-102 6-42 (175)
194 2vp4_A Deoxynucleoside kinase; 97.9 2.1E-06 7.1E-11 84.6 1.8 39 58-102 16-54 (230)
195 2z4s_A Chromosomal replication 97.9 1.2E-06 4.1E-11 95.1 0.0 70 192-262 193-264 (440)
196 1ega_A Protein (GTP-binding pr 97.9 6.2E-06 2.1E-10 84.8 3.6 153 62-248 8-170 (301)
197 3tau_A Guanylate kinase, GMP k 97.8 9.7E-06 3.3E-10 78.5 3.9 29 60-88 6-34 (208)
198 2q6t_A DNAB replication FORK h 97.8 0.00013 4.4E-09 79.0 12.5 172 49-252 187-397 (444)
199 2qt1_A Nicotinamide riboside k 97.8 1.7E-05 5.7E-10 76.5 4.8 29 58-86 17-45 (207)
200 3cf0_A Transitional endoplasmi 97.7 4.6E-05 1.6E-09 78.1 8.0 29 58-86 45-73 (301)
201 1rz3_A Hypothetical protein rb 97.7 5E-06 1.7E-10 80.1 0.4 41 59-101 19-59 (201)
202 3tqc_A Pantothenate kinase; bi 97.7 1.9E-06 6.4E-11 89.5 -2.8 42 47-88 71-118 (321)
203 3ney_A 55 kDa erythrocyte memb 97.7 9.8E-06 3.4E-10 78.1 2.3 30 58-87 15-44 (197)
204 1ypw_A Transitional endoplasmi 97.6 4.3E-05 1.5E-09 89.0 6.8 31 58-88 234-264 (806)
205 1cke_A CK, MSSA, protein (cyti 97.6 3.3E-06 1.1E-10 82.4 -2.3 57 62-118 5-74 (227)
206 3kl4_A SRP54, signal recogniti 97.6 0.00013 4.6E-09 78.5 9.2 125 61-235 96-223 (433)
207 2qby_A CDC6 homolog 1, cell di 97.6 1.8E-05 6.1E-10 82.9 2.3 28 60-87 43-70 (386)
208 2wjg_A FEOB, ferrous iron tran 97.6 3.8E-05 1.3E-09 71.9 4.0 22 64-85 9-30 (188)
209 1kag_A SKI, shikimate kinase I 97.6 2.8E-05 9.7E-10 72.3 2.8 27 61-87 3-29 (173)
210 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 4.7E-05 1.6E-09 69.9 4.1 30 53-83 15-44 (149)
211 1lv7_A FTSH; alpha/beta domain 97.5 0.00028 9.7E-09 70.1 9.8 35 51-87 36-70 (257)
212 1u94_A RECA protein, recombina 97.4 0.0019 6.7E-08 67.7 15.5 36 51-86 50-87 (356)
213 2i1q_A DNA repair and recombin 97.4 0.00076 2.6E-08 69.6 11.2 171 51-252 86-290 (322)
214 2p67_A LAO/AO transport system 97.4 8.4E-06 2.9E-10 85.4 -3.8 53 47-101 41-93 (341)
215 3h4m_A Proteasome-activating n 97.3 0.00031 1.1E-08 70.7 7.6 28 59-86 48-75 (285)
216 3m6a_A ATP-dependent protease 97.3 3.7E-05 1.3E-09 85.5 0.7 51 48-101 95-145 (543)
217 2qag_A Septin-2, protein NEDD5 97.3 7.8E-06 2.7E-10 86.3 -5.3 46 47-100 28-73 (361)
218 3llm_A ATP-dependent RNA helic 97.3 0.00037 1.2E-08 68.5 6.9 66 177-246 162-229 (235)
219 1mky_A Probable GTP-binding pr 97.3 0.0002 6.8E-09 77.4 5.4 68 64-131 182-262 (439)
220 3ice_A Transcription terminati 97.2 3.5E-05 1.2E-09 81.2 -0.7 33 54-86 166-198 (422)
221 2pez_A Bifunctional 3'-phospho 97.2 7.2E-05 2.5E-09 70.2 1.4 39 60-101 3-43 (179)
222 3bgw_A DNAB-like replicative h 97.2 0.0013 4.3E-08 71.3 10.9 181 49-252 184-394 (444)
223 2gj8_A MNME, tRNA modification 97.2 0.00043 1.5E-08 64.3 6.1 27 60-86 2-28 (172)
224 2www_A Methylmalonic aciduria 97.2 8.1E-05 2.8E-09 78.1 1.1 41 60-102 72-112 (349)
225 4eaq_A DTMP kinase, thymidylat 97.2 0.00014 4.8E-09 71.6 2.6 37 51-87 12-51 (229)
226 3qks_A DNA double-strand break 97.1 0.00024 8.2E-09 68.5 4.1 29 54-83 16-44 (203)
227 3lxx_A GTPase IMAP family memb 97.1 0.0018 6.2E-08 63.5 10.5 43 192-234 111-154 (239)
228 1m2o_B GTP-binding protein SAR 97.1 0.00053 1.8E-08 64.7 5.5 50 50-100 12-67 (190)
229 1m7g_A Adenylylsulfate kinase; 97.0 0.00014 4.8E-09 70.2 1.0 41 58-100 21-63 (211)
230 2w58_A DNAI, primosome compone 97.0 0.00018 6E-09 68.7 1.2 24 63-86 55-78 (202)
231 2qor_A Guanylate kinase; phosp 96.9 0.00039 1.3E-08 66.7 3.2 29 58-86 8-36 (204)
232 1y63_A LMAJ004144AAA protein; 96.9 0.00041 1.4E-08 65.5 3.1 32 54-85 2-33 (184)
233 1l8q_A Chromosomal replication 96.9 0.0023 7.8E-08 65.8 9.0 45 191-236 96-141 (324)
234 1f6b_A SAR1; gtpases, N-termin 96.9 0.00022 7.5E-09 68.0 1.1 36 49-85 13-48 (198)
235 3d8b_A Fidgetin-like protein 1 96.9 0.0053 1.8E-07 64.3 11.8 27 60-86 115-141 (357)
236 4fcw_A Chaperone protein CLPB; 96.9 0.0016 5.6E-08 66.1 7.6 25 63-87 48-72 (311)
237 1q57_A DNA primase/helicase; d 96.8 0.0034 1.2E-07 68.9 10.2 67 184-251 343-440 (503)
238 3bos_A Putative DNA replicatio 96.8 0.0011 3.7E-08 64.3 5.6 26 61-86 51-76 (242)
239 2wji_A Ferrous iron transport 96.8 0.0013 4.6E-08 60.2 5.8 23 64-86 5-27 (165)
240 2b8t_A Thymidine kinase; deoxy 96.8 0.0023 7.8E-08 62.7 7.4 53 193-251 89-150 (223)
241 3cmw_A Protein RECA, recombina 96.7 0.0035 1.2E-07 77.5 10.3 29 58-86 728-756 (1706)
242 2if2_A Dephospho-COA kinase; a 96.7 0.0006 2.1E-08 65.1 2.9 21 64-84 3-23 (204)
243 2ffh_A Protein (FFH); SRP54, s 96.7 0.00033 1.1E-08 75.2 1.0 47 53-103 91-137 (425)
244 2zts_A Putative uncharacterize 96.7 0.0024 8.2E-08 62.4 6.8 61 191-251 133-206 (251)
245 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.006 2.1E-07 60.1 9.7 27 60-86 37-63 (262)
246 3auy_A DNA double-strand break 96.6 0.00098 3.3E-08 70.3 4.0 31 52-83 16-46 (371)
247 2v1u_A Cell division control p 96.6 0.0015 5.1E-08 68.2 5.3 27 60-86 42-68 (387)
248 1xp8_A RECA protein, recombina 96.6 0.02 6.8E-07 60.2 13.8 29 57-85 69-97 (366)
249 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00025 8.4E-09 74.2 -0.9 37 50-86 10-48 (359)
250 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.022 7.4E-07 58.7 13.9 28 59-86 42-69 (322)
251 1np6_A Molybdopterin-guanine d 96.6 0.00079 2.7E-08 63.4 2.7 39 63-101 7-46 (174)
252 2p5t_B PEZT; postsegregational 96.6 0.00048 1.6E-08 68.6 1.2 46 51-101 22-67 (253)
253 1sxj_C Activator 1 40 kDa subu 96.6 0.00028 9.6E-09 73.3 -0.5 42 47-88 29-72 (340)
254 2yvu_A Probable adenylyl-sulfa 96.5 0.0012 4.1E-08 62.1 3.5 28 60-87 11-38 (186)
255 3cm0_A Adenylate kinase; ATP-b 96.5 0.0014 4.6E-08 61.4 3.5 27 60-86 2-28 (186)
256 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.8E-08 63.2 2.9 25 62-86 18-42 (202)
257 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0012 4.1E-08 70.2 3.3 45 56-100 16-69 (396)
258 1j8m_F SRP54, signal recogniti 96.5 0.00028 9.6E-09 72.3 -1.6 47 53-102 89-136 (297)
259 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.2E-08 59.5 3.3 23 64-86 3-25 (173)
260 1qhx_A CPT, protein (chloramph 96.3 0.002 7E-08 59.7 3.6 26 62-87 3-28 (178)
261 1q3t_A Cytidylate kinase; nucl 96.3 0.002 6.7E-08 63.3 3.4 29 58-86 12-40 (236)
262 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0059 2E-07 62.9 6.8 28 57-84 118-145 (331)
263 2zej_A Dardarin, leucine-rich 96.2 0.0021 7.2E-08 60.0 3.1 23 64-86 4-26 (184)
264 3io5_A Recombination and repai 96.2 0.0044 1.5E-07 63.7 5.4 28 57-85 24-52 (333)
265 1kht_A Adenylate kinase; phosp 96.1 0.0028 9.5E-08 59.3 3.5 25 62-86 3-27 (192)
266 3r20_A Cytidylate kinase; stru 96.1 0.0028 9.5E-08 62.5 3.4 25 62-86 9-33 (233)
267 3hu3_A Transitional endoplasmi 96.1 0.0082 2.8E-07 65.7 7.5 28 59-86 235-262 (489)
268 2rhm_A Putative kinase; P-loop 96.1 0.0027 9.2E-08 59.6 3.1 27 60-86 3-29 (193)
269 2ze6_A Isopentenyl transferase 96.1 0.0028 9.5E-08 63.1 3.4 24 63-86 2-25 (253)
270 3cmu_A Protein RECA, recombina 96.1 0.013 4.4E-07 73.5 9.8 77 183-259 449-558 (2050)
271 2qp9_X Vacuolar protein sortin 96.0 0.021 7E-07 59.7 9.9 27 60-86 82-108 (355)
272 1vht_A Dephospho-COA kinase; s 96.0 0.0036 1.2E-07 60.3 3.6 24 61-84 3-26 (218)
273 3lw7_A Adenylate kinase relate 95.9 0.0037 1.3E-07 57.1 3.3 19 64-82 3-21 (179)
274 1ex7_A Guanylate kinase; subst 95.9 0.0037 1.3E-07 59.4 3.2 23 64-86 3-25 (186)
275 3cmw_A Protein RECA, recombina 95.9 0.067 2.3E-06 66.3 14.9 36 50-85 369-406 (1706)
276 3trf_A Shikimate kinase, SK; a 95.9 0.0044 1.5E-07 57.9 3.5 26 61-86 4-29 (185)
277 1gvn_B Zeta; postsegregational 95.9 0.0042 1.4E-07 63.1 3.6 36 60-99 31-66 (287)
278 2v54_A DTMP kinase, thymidylat 95.8 0.0045 1.5E-07 58.7 3.5 26 61-86 3-28 (204)
279 3iij_A Coilin-interacting nucl 95.8 0.0041 1.4E-07 57.9 3.1 27 60-86 9-35 (180)
280 3eie_A Vacuolar protein sortin 95.8 0.044 1.5E-06 56.2 11.2 27 60-86 49-75 (322)
281 2plr_A DTMP kinase, probable t 95.8 0.0051 1.7E-07 58.5 3.8 27 61-87 3-29 (213)
282 2jaq_A Deoxyguanosine kinase; 95.8 0.0046 1.6E-07 58.4 3.4 23 64-86 2-24 (205)
283 1ly1_A Polynucleotide kinase; 95.8 0.0054 1.8E-07 56.7 3.6 22 63-84 3-24 (181)
284 2r8r_A Sensor protein; KDPD, P 95.7 0.0075 2.6E-07 59.0 4.6 26 61-86 4-30 (228)
285 1xx6_A Thymidine kinase; NESG, 95.7 0.02 6.8E-07 54.6 7.5 53 193-251 81-142 (191)
286 1via_A Shikimate kinase; struc 95.7 0.0046 1.6E-07 57.3 3.0 23 64-86 6-28 (175)
287 2wwf_A Thymidilate kinase, put 95.7 0.0056 1.9E-07 58.3 3.4 27 60-86 8-34 (212)
288 1uf9_A TT1252 protein; P-loop, 95.6 0.0061 2.1E-07 57.6 3.4 23 63-85 9-31 (203)
289 1gtv_A TMK, thymidylate kinase 95.6 0.003 1E-07 60.4 1.2 24 64-87 2-25 (214)
290 2c95_A Adenylate kinase 1; tra 95.6 0.0057 2E-07 57.4 3.2 27 60-86 7-33 (196)
291 3k53_A Ferrous iron transport 95.6 0.0052 1.8E-07 61.6 2.9 45 202-247 144-188 (271)
292 3ihw_A Centg3; RAS, centaurin, 95.5 0.011 3.9E-07 55.2 5.0 23 64-86 22-44 (184)
293 1xjc_A MOBB protein homolog; s 95.5 0.0065 2.2E-07 56.8 3.2 25 63-87 5-29 (169)
294 1nn5_A Similar to deoxythymidy 95.5 0.0066 2.3E-07 57.9 3.3 28 59-86 6-33 (215)
295 1tev_A UMP-CMP kinase; ploop, 95.5 0.0077 2.6E-07 56.3 3.7 25 62-86 3-27 (196)
296 1nks_A Adenylate kinase; therm 95.5 0.0067 2.3E-07 56.6 3.1 23 64-86 3-25 (194)
297 1ko7_A HPR kinase/phosphatase; 95.3 0.012 4.2E-07 60.4 4.7 38 47-85 130-167 (314)
298 2ged_A SR-beta, signal recogni 95.3 0.0078 2.7E-07 56.2 3.0 24 63-86 49-72 (193)
299 2bwj_A Adenylate kinase 5; pho 95.3 0.0071 2.4E-07 56.9 2.6 27 60-86 10-36 (199)
300 1z2a_A RAS-related protein RAB 95.3 0.0082 2.8E-07 54.2 2.9 23 64-86 7-29 (168)
301 4b4t_J 26S protease regulatory 95.3 0.075 2.6E-06 56.4 10.7 24 63-86 183-206 (405)
302 1aky_A Adenylate kinase; ATP:A 95.3 0.0098 3.4E-07 57.3 3.6 26 61-86 3-28 (220)
303 4b4t_M 26S protease regulatory 95.3 0.06 2E-06 57.8 10.0 28 59-86 212-239 (434)
304 2nzj_A GTP-binding protein REM 95.3 0.0093 3.2E-07 54.4 3.3 23 64-86 6-28 (175)
305 2erx_A GTP-binding protein DI- 95.2 0.0096 3.3E-07 53.9 3.2 23 64-86 5-27 (172)
306 3q72_A GTP-binding protein RAD 95.2 0.0077 2.6E-07 54.5 2.5 24 64-87 4-27 (166)
307 3ake_A Cytidylate kinase; CMP 95.2 0.0092 3.2E-07 56.6 3.2 23 64-86 4-26 (208)
308 4b4t_L 26S protease subunit RP 95.2 0.081 2.8E-06 56.8 10.8 28 59-86 212-239 (437)
309 2dyk_A GTP-binding protein; GT 95.2 0.0095 3.2E-07 53.5 3.0 23 64-86 3-25 (161)
310 1kao_A RAP2A; GTP-binding prot 95.2 0.0095 3.2E-07 53.6 3.0 23 64-86 5-27 (167)
311 3vfd_A Spastin; ATPase, microt 95.2 0.14 4.8E-06 53.9 12.5 26 61-86 147-172 (389)
312 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.6E-07 55.6 3.4 23 64-86 2-24 (197)
313 1u8z_A RAS-related protein RAL 95.1 0.0096 3.3E-07 53.6 2.9 23 64-86 6-28 (168)
314 3q85_A GTP-binding protein REM 95.1 0.011 3.6E-07 53.7 3.2 22 65-86 5-26 (169)
315 2vli_A Antibiotic resistance p 95.1 0.0077 2.6E-07 55.9 2.3 26 61-86 4-29 (183)
316 2ce2_X GTPase HRAS; signaling 95.1 0.0089 3.1E-07 53.6 2.6 23 64-86 5-27 (166)
317 3tw8_B RAS-related protein RAB 95.1 0.0099 3.4E-07 54.4 2.9 23 64-86 11-33 (181)
318 1z0j_A RAB-22, RAS-related pro 95.1 0.01 3.6E-07 53.6 3.0 23 64-86 8-30 (170)
319 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.7E-07 57.4 3.2 27 60-86 5-31 (227)
320 2qmh_A HPR kinase/phosphorylas 95.0 0.022 7.6E-07 54.6 5.2 39 47-86 20-58 (205)
321 1z08_A RAS-related protein RAB 95.0 0.011 3.7E-07 53.7 3.0 23 64-86 8-30 (170)
322 3b1v_A Ferrous iron uptake tra 95.0 0.012 4E-07 59.3 3.5 23 64-86 5-27 (272)
323 1ek0_A Protein (GTP-binding pr 95.0 0.011 3.7E-07 53.5 2.9 23 64-86 5-27 (170)
324 1c1y_A RAS-related protein RAP 95.0 0.011 3.7E-07 53.3 2.9 23 64-86 5-27 (167)
325 2cdn_A Adenylate kinase; phosp 95.0 0.013 4.6E-07 55.5 3.7 26 61-86 19-44 (201)
326 1fzq_A ADP-ribosylation factor 95.0 0.0094 3.2E-07 55.4 2.5 23 64-86 18-40 (181)
327 1g16_A RAS-related protein SEC 95.0 0.01 3.4E-07 53.7 2.6 22 65-86 6-27 (170)
328 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.011 3.8E-07 54.0 3.0 23 64-86 9-31 (177)
329 4b4t_K 26S protease regulatory 95.0 0.11 3.6E-06 55.8 10.9 27 60-86 204-230 (428)
330 1ky3_A GTP-binding protein YPT 95.0 0.011 3.9E-07 54.1 3.0 23 64-86 10-32 (182)
331 1jal_A YCHF protein; nucleotid 95.0 0.017 5.7E-07 60.7 4.5 38 62-99 2-48 (363)
332 3fb4_A Adenylate kinase; psych 94.9 0.013 4.4E-07 56.2 3.4 23 64-86 2-24 (216)
333 3lxw_A GTPase IMAP family memb 94.9 0.012 4.1E-07 58.2 3.2 24 64-87 23-46 (247)
334 1svi_A GTP-binding protein YSX 94.9 0.011 3.7E-07 55.2 2.7 23 64-86 25-47 (195)
335 2pbr_A DTMP kinase, thymidylat 94.9 0.013 4.6E-07 54.6 3.4 23 64-86 2-24 (195)
336 2lkc_A Translation initiation 94.9 0.015 5.3E-07 53.1 3.7 25 62-86 8-32 (178)
337 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.9E-07 53.5 3.4 25 62-86 7-31 (168)
338 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.015 5.1E-07 57.9 3.8 27 60-86 2-28 (260)
339 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.3E-07 53.9 3.0 24 63-86 3-26 (173)
340 2fn4_A P23, RAS-related protei 94.9 0.011 3.9E-07 54.0 2.7 23 64-86 11-33 (181)
341 1zak_A Adenylate kinase; ATP:A 94.9 0.012 4E-07 56.9 2.9 26 61-86 4-29 (222)
342 1ukz_A Uridylate kinase; trans 94.9 0.015 5.1E-07 55.1 3.5 25 62-86 15-39 (203)
343 3dm5_A SRP54, signal recogniti 94.9 0.33 1.1E-05 52.1 14.4 27 61-87 99-125 (443)
344 3pqc_A Probable GTP-binding pr 94.9 0.012 4E-07 54.7 2.7 23 64-86 25-47 (195)
345 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4.3E-07 54.7 2.9 24 63-86 3-26 (184)
346 1r2q_A RAS-related protein RAB 94.8 0.013 4.5E-07 52.9 2.9 23 64-86 8-30 (170)
347 4dsu_A GTPase KRAS, isoform 2B 94.8 0.013 4.5E-07 54.0 3.0 23 64-86 6-28 (189)
348 2hxs_A RAB-26, RAS-related pro 94.8 0.015 5.1E-07 53.2 3.3 23 64-86 8-30 (178)
349 4ag6_A VIRB4 ATPase, type IV s 94.8 0.0081 2.8E-07 63.5 1.6 45 193-238 262-309 (392)
350 2cxx_A Probable GTP-binding pr 94.8 0.012 4.2E-07 54.4 2.7 22 65-86 4-25 (190)
351 3clv_A RAB5 protein, putative; 94.8 0.013 4.6E-07 54.5 3.0 23 64-86 9-31 (208)
352 3dl0_A Adenylate kinase; phosp 94.8 0.015 5.1E-07 55.8 3.4 23 64-86 2-24 (216)
353 2pt5_A Shikimate kinase, SK; a 94.8 0.016 5.5E-07 53.0 3.4 23 64-86 2-24 (168)
354 1upt_A ARL1, ADP-ribosylation 94.8 0.014 4.8E-07 52.9 2.9 23 64-86 9-31 (171)
355 1qf9_A UMP/CMP kinase, protein 94.7 0.016 5.4E-07 54.0 3.3 25 62-86 6-30 (194)
356 2oil_A CATX-8, RAS-related pro 94.7 0.014 4.8E-07 54.5 2.9 23 64-86 27-49 (193)
357 3bc1_A RAS-related protein RAB 94.7 0.014 4.8E-07 54.0 2.9 23 64-86 13-35 (195)
358 1r8s_A ADP-ribosylation factor 94.7 0.015 5E-07 52.5 2.9 22 65-86 3-24 (164)
359 3tlx_A Adenylate kinase 2; str 94.7 0.018 6.2E-07 56.7 3.7 26 61-86 28-53 (243)
360 3t1o_A Gliding protein MGLA; G 94.6 0.017 5.9E-07 53.6 3.3 25 64-88 16-40 (198)
361 1moz_A ARL1, ADP-ribosylation 94.6 0.0097 3.3E-07 54.8 1.5 23 63-85 19-41 (183)
362 2y8e_A RAB-protein 6, GH09086P 94.6 0.015 5E-07 53.2 2.6 23 64-86 16-38 (179)
363 2g6b_A RAS-related protein RAB 94.6 0.016 5.5E-07 53.1 2.9 24 64-87 12-35 (180)
364 1z0f_A RAB14, member RAS oncog 94.6 0.016 5.5E-07 52.8 2.9 23 64-86 17-39 (179)
365 2a9k_A RAS-related protein RAL 94.6 0.016 5.5E-07 53.3 2.9 23 64-86 20-42 (187)
366 3con_A GTPase NRAS; structural 94.5 0.017 5.7E-07 53.7 2.9 23 64-86 23-45 (190)
367 2efe_B Small GTP-binding prote 94.5 0.017 6E-07 52.9 3.0 23 64-86 14-36 (181)
368 1wf3_A GTP-binding protein; GT 94.5 0.019 6.3E-07 58.7 3.4 26 60-86 6-31 (301)
369 3iby_A Ferrous iron transport 94.5 0.016 5.6E-07 57.6 2.9 23 64-86 3-25 (256)
370 2j9r_A Thymidine kinase; TK1, 94.5 0.12 4E-06 50.0 8.8 53 193-251 101-162 (214)
371 3t5d_A Septin-7; GTP-binding p 94.5 0.015 5.1E-07 58.3 2.6 23 64-86 10-32 (274)
372 1uj2_A Uridine-cytidine kinase 94.5 0.019 6.7E-07 56.7 3.4 24 63-86 23-46 (252)
373 2orv_A Thymidine kinase; TP4A 94.4 0.17 5.8E-06 49.5 9.9 53 192-251 89-150 (234)
374 1nrj_B SR-beta, signal recogni 94.4 0.018 6E-07 55.0 2.9 23 64-86 14-36 (218)
375 2bov_A RAla, RAS-related prote 94.4 0.018 6.2E-07 54.1 2.9 23 64-86 16-38 (206)
376 1vg8_A RAS-related protein RAB 94.4 0.018 6.3E-07 54.1 3.0 23 64-86 10-32 (207)
377 1ksh_A ARF-like protein 2; sma 94.4 0.019 6.4E-07 53.2 3.0 25 62-86 18-42 (186)
378 2bme_A RAB4A, RAS-related prot 94.4 0.017 5.8E-07 53.3 2.6 23 64-86 12-34 (186)
379 2grj_A Dephospho-COA kinase; T 94.4 0.021 7.3E-07 54.3 3.4 25 61-85 11-35 (192)
380 2gf9_A RAS-related protein RAB 94.4 0.019 6.5E-07 53.4 2.9 23 64-86 24-46 (189)
381 3cbq_A GTP-binding protein REM 94.4 0.015 5.3E-07 54.8 2.3 23 64-86 25-47 (195)
382 3cmu_A Protein RECA, recombina 94.4 0.039 1.3E-06 69.2 6.4 36 51-86 719-756 (2050)
383 3iev_A GTP-binding protein ERA 94.3 0.021 7.2E-07 58.4 3.4 23 64-86 12-34 (308)
384 3tkl_A RAS-related protein RAB 94.3 0.02 6.7E-07 53.4 2.9 23 64-86 18-40 (196)
385 3a8t_A Adenylate isopentenyltr 94.3 0.034 1.2E-06 57.6 5.0 26 61-86 39-64 (339)
386 2gf0_A GTP-binding protein DI- 94.3 0.018 6.2E-07 53.7 2.7 23 64-86 10-32 (199)
387 2xtp_A GTPase IMAP family memb 94.3 0.019 6.6E-07 56.7 3.0 23 64-86 24-46 (260)
388 1m7b_A RND3/RHOE small GTP-bin 94.3 0.018 6.3E-07 53.3 2.6 23 64-86 9-31 (184)
389 4b4t_H 26S protease regulatory 94.3 0.078 2.7E-06 57.2 7.8 28 59-86 240-267 (467)
390 3kkq_A RAS-related protein M-R 94.3 0.021 7E-07 52.7 2.9 23 64-86 20-42 (183)
391 2dby_A GTP-binding protein; GD 94.3 0.019 6.5E-07 60.4 2.9 22 65-86 4-25 (368)
392 2fg5_A RAB-22B, RAS-related pr 94.3 0.019 6.5E-07 53.7 2.7 23 64-86 25-47 (192)
393 1jbk_A CLPB protein; beta barr 94.2 0.026 9E-07 51.8 3.6 27 60-86 41-67 (195)
394 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.021 7.3E-07 52.5 2.9 23 64-86 7-29 (186)
395 2xb4_A Adenylate kinase; ATP-b 94.2 0.024 8.2E-07 54.9 3.4 23 64-86 2-24 (223)
396 1zbd_A Rabphilin-3A; G protein 94.2 0.023 7.8E-07 53.5 3.2 23 64-86 10-32 (203)
397 3a1s_A Iron(II) transport prot 94.2 0.022 7.6E-07 56.7 3.2 23 64-86 7-29 (258)
398 3be4_A Adenylate kinase; malar 94.2 0.023 7.7E-07 54.8 3.1 25 62-86 5-29 (217)
399 2il1_A RAB12; G-protein, GDP, 94.2 0.021 7.2E-07 53.5 2.8 23 64-86 28-50 (192)
400 3v9p_A DTMP kinase, thymidylat 94.2 0.021 7.1E-07 56.0 2.8 30 58-87 21-50 (227)
401 1z06_A RAS-related protein RAB 94.2 0.023 7.7E-07 52.9 3.0 23 64-86 22-44 (189)
402 3bwd_D RAC-like GTP-binding pr 94.2 0.027 9.2E-07 51.7 3.4 23 64-86 10-32 (182)
403 3llu_A RAS-related GTP-binding 94.1 0.022 7.5E-07 53.5 2.8 25 64-88 22-46 (196)
404 3i8s_A Ferrous iron transport 94.1 0.022 7.5E-07 57.2 3.0 23 64-86 5-27 (274)
405 2wsm_A Hydrogenase expression/ 94.1 0.022 7.7E-07 54.4 2.9 24 63-86 31-54 (221)
406 2cjw_A GTP-binding protein GEM 94.1 0.023 7.8E-07 53.5 2.9 22 64-85 8-29 (192)
407 4dhe_A Probable GTP-binding pr 94.1 0.013 4.5E-07 56.0 1.2 23 64-86 31-53 (223)
408 3oes_A GTPase rhebl1; small GT 94.1 0.021 7.2E-07 53.8 2.6 23 64-86 26-48 (201)
409 3umf_A Adenylate kinase; rossm 94.1 0.028 9.7E-07 54.6 3.6 29 58-86 25-53 (217)
410 2a5j_A RAS-related protein RAB 94.1 0.024 8.2E-07 52.9 2.9 23 64-86 23-45 (191)
411 2f6r_A COA synthase, bifunctio 94.1 0.024 8.3E-07 57.2 3.1 23 62-84 75-97 (281)
412 3t5g_A GTP-binding protein RHE 94.0 0.022 7.6E-07 52.3 2.6 23 64-86 8-30 (181)
413 2o52_A RAS-related protein RAB 94.0 0.024 8.2E-07 53.5 2.9 23 64-86 27-49 (200)
414 1zj6_A ADP-ribosylation factor 94.0 0.024 8.3E-07 52.6 2.9 23 64-86 18-40 (187)
415 3dz8_A RAS-related protein RAB 94.0 0.022 7.6E-07 53.1 2.6 23 64-86 25-47 (191)
416 1a7j_A Phosphoribulokinase; tr 94.0 0.014 4.9E-07 59.3 1.3 26 61-86 4-29 (290)
417 1njg_A DNA polymerase III subu 94.0 0.0074 2.5E-07 57.8 -0.8 42 193-237 126-167 (250)
418 1jwy_B Dynamin A GTPase domain 94.0 0.024 8.1E-07 57.7 3.0 23 64-86 26-48 (315)
419 1zd9_A ADP-ribosylation factor 94.0 0.025 8.5E-07 52.7 2.9 23 64-86 24-46 (188)
420 2bcg_Y Protein YP2, GTP-bindin 94.0 0.022 7.6E-07 53.7 2.6 23 64-86 10-32 (206)
421 2h57_A ADP-ribosylation factor 94.0 0.019 6.5E-07 53.5 2.1 23 64-86 23-45 (190)
422 4edh_A DTMP kinase, thymidylat 94.0 0.032 1.1E-06 54.0 3.7 28 60-87 4-31 (213)
423 1x3s_A RAS-related protein RAB 94.0 0.025 8.6E-07 52.5 2.9 23 64-86 17-39 (195)
424 2atv_A RERG, RAS-like estrogen 94.0 0.026 8.8E-07 52.9 3.0 23 64-86 30-52 (196)
425 2qu8_A Putative nucleolar GTP- 94.0 0.025 8.7E-07 54.6 3.0 23 64-86 31-53 (228)
426 4bas_A ADP-ribosylation factor 94.0 0.025 8.6E-07 52.7 2.9 23 64-86 19-41 (199)
427 3reg_A RHO-like small GTPase; 94.0 0.026 8.8E-07 52.7 2.9 23 64-86 25-47 (194)
428 1ltq_A Polynucleotide kinase; 93.9 0.03 1E-06 56.6 3.6 23 63-85 3-25 (301)
429 2p5s_A RAS and EF-hand domain 93.9 0.026 8.9E-07 53.1 2.9 23 64-86 30-52 (199)
430 3cph_A RAS-related protein SEC 93.9 0.026 8.8E-07 53.4 2.9 23 64-86 22-44 (213)
431 2f7s_A C25KG, RAS-related prot 93.9 0.029 9.9E-07 53.4 3.3 23 64-86 27-49 (217)
432 2h17_A ADP-ribosylation factor 93.9 0.023 7.8E-07 52.5 2.4 23 64-86 23-45 (181)
433 1e4v_A Adenylate kinase; trans 93.9 0.027 9.4E-07 54.0 3.1 23 64-86 2-24 (214)
434 2ew1_A RAS-related protein RAB 93.9 0.024 8.3E-07 53.9 2.6 23 64-86 28-50 (201)
435 1ak2_A Adenylate kinase isoenz 93.9 0.033 1.1E-06 54.2 3.6 26 61-86 15-40 (233)
436 2iwr_A Centaurin gamma 1; ANK 93.8 0.022 7.7E-07 52.1 2.2 23 64-86 9-31 (178)
437 2fv8_A H6, RHO-related GTP-bin 93.8 0.027 9.2E-07 53.4 2.7 23 64-86 27-49 (207)
438 2q3h_A RAS homolog gene family 93.8 0.032 1.1E-06 52.3 3.2 23 64-86 22-44 (201)
439 3c5c_A RAS-like protein 12; GD 93.7 0.031 1E-06 52.2 3.0 23 64-86 23-45 (187)
440 2j1l_A RHO-related GTP-binding 93.7 0.031 1.1E-06 53.4 3.0 23 64-86 36-58 (214)
441 2aka_B Dynamin-1; fusion prote 93.7 0.028 9.4E-07 56.6 2.7 23 64-86 28-50 (299)
442 3zvl_A Bifunctional polynucleo 93.6 0.033 1.1E-06 59.6 3.4 28 59-86 255-282 (416)
443 1gwn_A RHO-related GTP-binding 93.6 0.029 9.8E-07 53.5 2.6 23 64-86 30-52 (205)
444 3d3q_A TRNA delta(2)-isopenten 93.6 0.034 1.2E-06 57.7 3.4 24 63-86 8-31 (340)
445 2fh5_B SR-beta, signal recogni 93.6 0.032 1.1E-06 53.0 2.9 23 64-86 9-31 (214)
446 2fu5_C RAS-related protein RAB 93.6 0.021 7.3E-07 52.5 1.6 23 64-86 10-32 (183)
447 3lv8_A DTMP kinase, thymidylat 93.6 0.036 1.2E-06 54.6 3.3 27 61-87 26-52 (236)
448 2p65_A Hypothetical protein PF 93.6 0.032 1.1E-06 51.2 2.9 27 60-86 41-67 (187)
449 1sky_E F1-ATPase, F1-ATP synth 93.6 0.039 1.3E-06 59.7 3.8 35 51-86 141-175 (473)
450 3exa_A TRNA delta(2)-isopenten 93.6 0.041 1.4E-06 56.4 3.8 25 62-86 3-27 (322)
451 2b6h_A ADP-ribosylation factor 93.5 0.03 1E-06 52.5 2.5 23 64-86 31-53 (192)
452 2gco_A H9, RHO-related GTP-bin 93.5 0.032 1.1E-06 52.6 2.6 23 64-86 27-49 (201)
453 3sr0_A Adenylate kinase; phosp 93.5 0.041 1.4E-06 53.0 3.4 23 64-86 2-24 (206)
454 3def_A T7I23.11 protein; chlor 93.5 0.035 1.2E-06 55.2 3.0 23 64-86 38-60 (262)
455 3cf2_A TER ATPase, transitiona 93.4 0.16 5.6E-06 58.5 8.8 28 59-86 235-262 (806)
456 2g3y_A GTP-binding protein GEM 93.3 0.043 1.5E-06 52.9 3.3 23 64-86 39-61 (211)
457 3tqf_A HPR(Ser) kinase; transf 93.3 0.068 2.3E-06 50.0 4.4 36 49-85 4-39 (181)
458 2atx_A Small GTP binding prote 93.3 0.037 1.3E-06 51.6 2.7 23 64-86 20-42 (194)
459 4tmk_A Protein (thymidylate ki 93.3 0.045 1.5E-06 53.0 3.4 27 61-87 2-28 (213)
460 3tmk_A Thymidylate kinase; pho 93.3 0.044 1.5E-06 53.2 3.3 29 60-88 3-31 (216)
461 1h65_A Chloroplast outer envel 93.3 0.038 1.3E-06 55.2 2.9 23 64-86 41-63 (270)
462 2h92_A Cytidylate kinase; ross 93.3 0.041 1.4E-06 52.7 3.1 25 62-86 3-27 (219)
463 3ld9_A DTMP kinase, thymidylat 93.3 0.051 1.7E-06 53.0 3.7 27 60-86 19-45 (223)
464 1qvr_A CLPB protein; coiled co 93.2 0.088 3E-06 61.5 6.4 25 63-87 589-613 (854)
465 3crm_A TRNA delta(2)-isopenten 93.2 0.045 1.5E-06 56.4 3.4 24 63-86 6-29 (323)
466 2ocp_A DGK, deoxyguanosine kin 93.2 0.047 1.6E-06 53.3 3.5 25 62-86 2-26 (241)
467 3cnl_A YLQF, putative uncharac 93.2 0.046 1.6E-06 54.6 3.3 25 63-87 100-124 (262)
468 4djt_A GTP-binding nuclear pro 93.1 0.021 7.2E-07 54.4 0.7 23 64-86 13-35 (218)
469 3cpj_B GTP-binding protein YPT 93.1 0.044 1.5E-06 52.6 3.0 23 64-86 15-37 (223)
470 1sxj_D Activator 1 41 kDa subu 93.1 0.015 5.3E-07 59.8 -0.3 42 193-237 133-174 (353)
471 2hf9_A Probable hydrogenase ni 93.1 0.043 1.5E-06 52.6 2.9 24 63-86 39-62 (226)
472 1p5z_B DCK, deoxycytidine kina 93.0 0.034 1.2E-06 55.2 2.1 27 60-86 22-48 (263)
473 2hup_A RAS-related protein RAB 93.0 0.042 1.4E-06 51.9 2.7 23 64-86 31-53 (201)
474 2x77_A ADP-ribosylation factor 93.0 0.03 1E-06 52.0 1.5 22 64-85 24-45 (189)
475 2yc2_C IFT27, small RAB-relate 92.9 0.022 7.5E-07 53.5 0.5 22 64-85 22-43 (208)
476 1g5t_A COB(I)alamin adenosyltr 92.9 0.084 2.9E-06 50.3 4.5 71 182-254 107-181 (196)
477 3foz_A TRNA delta(2)-isopenten 92.7 0.066 2.3E-06 54.8 3.8 25 62-86 10-34 (316)
478 4gzl_A RAS-related C3 botulinu 92.7 0.049 1.7E-06 51.6 2.6 23 64-86 32-54 (204)
479 4dcu_A GTP-binding protein ENG 92.7 0.047 1.6E-06 59.0 2.8 53 180-237 89-142 (456)
480 2j0v_A RAC-like GTP-binding pr 92.6 0.05 1.7E-06 51.5 2.6 23 64-86 11-33 (212)
481 3q3j_B RHO-related GTP-binding 92.6 0.055 1.9E-06 51.7 2.9 23 64-86 29-51 (214)
482 2r62_A Cell division protease 92.5 0.017 5.8E-07 57.3 -0.9 27 58-86 42-68 (268)
483 2orw_A Thymidine kinase; TMTK, 92.4 0.071 2.4E-06 50.2 3.3 53 193-251 76-137 (184)
484 3eph_A TRNA isopentenyltransfe 92.3 0.069 2.4E-06 56.6 3.4 24 63-86 3-26 (409)
485 3pxi_A Negative regulator of g 92.2 0.25 8.5E-06 56.8 8.2 23 64-86 523-545 (758)
486 3euj_A Chromosome partition pr 92.1 0.21 7.2E-06 54.2 7.1 70 174-251 378-464 (483)
487 1ypw_A Transitional endoplasmi 92.1 0.025 8.6E-07 65.7 -0.3 32 55-86 504-535 (806)
488 3n70_A Transport activator; si 92.1 0.076 2.6E-06 47.6 2.9 41 193-236 76-116 (145)
489 3gmt_A Adenylate kinase; ssgci 92.0 0.079 2.7E-06 51.9 3.2 24 63-86 9-32 (230)
490 2chg_A Replication factor C sm 91.8 0.085 2.9E-06 49.5 3.1 42 193-237 102-143 (226)
491 4a9a_A Ribosome-interacting GT 91.7 0.13 4.4E-06 54.2 4.6 39 64-102 74-121 (376)
492 3p32_A Probable GTPase RV1496/ 91.6 0.096 3.3E-06 54.6 3.6 26 61-86 78-103 (355)
493 3syl_A Protein CBBX; photosynt 91.6 0.092 3.2E-06 52.9 3.3 27 60-86 65-91 (309)
494 3r7w_A Gtpase1, GTP-binding pr 91.6 0.1 3.4E-06 53.2 3.6 25 62-86 3-27 (307)
495 1wxq_A GTP-binding protein; st 91.5 0.084 2.9E-06 56.0 3.0 79 149-245 181-262 (397)
496 1puj_A YLQF, conserved hypothe 91.5 0.1 3.5E-06 52.6 3.5 25 63-87 121-145 (282)
497 3th5_A RAS-related C3 botulinu 90.7 0.036 1.2E-06 52.2 0.0 22 64-85 32-53 (204)
498 2hjg_A GTP-binding protein ENG 91.3 0.085 2.9E-06 56.6 2.8 23 64-86 5-27 (436)
499 2x2e_A Dynamin-1; nitration, h 91.3 0.066 2.2E-06 55.7 1.8 23 64-86 33-55 (353)
500 1d2n_A N-ethylmaleimide-sensit 91.2 0.11 3.9E-06 51.5 3.5 27 60-86 62-88 (272)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.1e-51 Score=431.68 Aligned_cols=226 Identities=27% Similarity=0.372 Sum_probs=201.9
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
...+|+++||+++|.. +.+.+.+|+||||++++||++||+||||||||||+|+|+|+.+| ++|+
T Consensus 21 ~~~mi~v~~ls~~y~~--------------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~ 84 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQ--------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGS 84 (366)
T ss_dssp --CCEEEEEEEEEEEC--------------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEE
T ss_pred CCceEEEEeEEEEeCC--------------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceE
Confidence 3347999999999941 11346799999999999999999999999999999999999987 7999
Q ss_pred EEECCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 046991 95 LLVNDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIG 168 (612)
Q Consensus 95 I~~~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 168 (612)
|.++|+++.. ...|+.+|||+|++.+++.+||+||+.++.... ..++++.+++++++++.+||.+..+++++
T Consensus 85 I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~--~~~~~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp EEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred EEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCChh
Confidence 9999998752 234678999999999999999999999987653 23567778899999999999998888886
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+|||||||||+|||||+.+|++|||||||||||+.++..++++|++++++.|+|||++|||++ ++.++|||++
T Consensus 163 ------~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~ 235 (366)
T 3tui_C 163 ------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVA 235 (366)
T ss_dssp ------TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEE
T ss_pred ------hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEE
Confidence 899999999999999999999999999999999999999999999998777999999999998 5889999999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++++.|+++++.
T Consensus 236 vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 236 VISNGELIEQDTVSEVF 252 (366)
T ss_dssp EEETTEEEECCBHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999998763
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.7e-51 Score=429.81 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=198.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++| ++|+|.+
T Consensus 4 ~l~i~~ls~~y------------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i 63 (359)
T 3fvq_A 4 ALHIGHLSKSF------------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISL 63 (359)
T ss_dssp CEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred EEEEEeEEEEE------------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEE
Confidence 68999999988 557799999999999999999999999999999999999987 7999999
Q ss_pred CCeeC----Ch-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 98 NDRPM----DA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 98 ~g~~~----~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
+|+++ .. ...++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++++.
T Consensus 64 ~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~r~~~---- 137 (359)
T 3fvq_A 64 SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG--KGRTAQERQRIEAMLELTGISELAGRYPH---- 137 (359)
T ss_dssp TTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS--SCCSHHHHHHHHHHHHHHTCGGGTTSCGG----
T ss_pred CCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCCchHhcCChh----
Confidence 99986 21 234678999999999999999999999875432 22455667889999999999999999987
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++..+||||++|++
T Consensus 138 --~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~ 214 (359)
T 3fvq_A 138 --ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ 214 (359)
T ss_dssp --GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC
Confidence 899999999999999999999999999999999999999999998887777999999999998 68999999999999
Q ss_pred CeEEEecChhhHH
Q 046991 253 GFVVHNGTLNHLE 265 (612)
Q Consensus 253 G~iv~~G~~~~~~ 265 (612)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~el~ 227 (359)
T 3fvq_A 215 GRILQTASPHELY 227 (359)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEeCHHHHH
Confidence 9999999998874
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-50 Score=430.20 Aligned_cols=219 Identities=31% Similarity=0.496 Sum_probs=201.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++| ++|+|.+
T Consensus 3 ~l~~~~l~~~y------------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i 62 (381)
T 3rlf_A 3 SVQLQNVTKAW------------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFI 62 (381)
T ss_dssp CEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred EEEEEeEEEEE------------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEE
Confidence 58999999988 557799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.+|||+|++.++|.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..++++. +|
T Consensus 63 ~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~p~------~L 134 (381)
T 3rlf_A 63 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPK------AL 134 (381)
T ss_dssp TTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTCCGG------GS
T ss_pred CCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCChh------HC
Confidence 9999753 234577999999999999999999999987654 23567778899999999999999999887 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+||||++|++|+++
T Consensus 135 SGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVA 213 (381)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998777999999999998 699999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 214 ~~g~~~~l~ 222 (381)
T 3rlf_A 214 QVGKPLELY 222 (381)
T ss_dssp EEECHHHHH
T ss_pred EEeCHHHHH
Confidence 999999874
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-50 Score=406.98 Aligned_cols=224 Identities=27% Similarity=0.450 Sum_probs=192.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++|.. +...+.+|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 1 ~l~~~~l~~~y~~--------------~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~ 64 (235)
T 3tif_A 1 MVKLKNVTKTYKM--------------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYI 64 (235)
T ss_dssp CEEEEEEEEEEEE--------------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEE
T ss_pred CEEEEEEEEEeCC--------------CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEE
Confidence 4799999999841 11235699999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh---hh----hcccEEEEecCCCcCCCCCHHHHHHHHHHccCC-CCCHHHHHHHHHHHHHHcCCccc-cccccc
Q 046991 98 NDRPMDA---EH----FRRISGYVTQDDALFPLLTVEETLMCSALLRLT-AGRRKQAASRVRGLLKELGLDHV-ASSRIG 168 (612)
Q Consensus 98 ~g~~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg 168 (612)
+|+++.. .. .++.+|||+|++.+++.+||+||+.++...+.. ..+.++..+++.++++.+||.+. .++++.
T Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (235)
T 3tif_A 65 DNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144 (235)
T ss_dssp TTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG
T ss_pred CCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh
Confidence 9998742 21 235699999999999999999999998654321 22466677889999999999875 477776
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++ +.++||+++
T Consensus 145 ------~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 145 ------QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp ------GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred ------hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 899999999999999999999999999999999999999999999997666899999999986 458999999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|+++..++++++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 217 YLKDGEVEREEKLRGFD 233 (235)
T ss_dssp EEETTEEEEEEECC---
T ss_pred EEECCEEEEEcChhhhc
Confidence 99999999999887643
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-50 Score=414.23 Aligned_cols=221 Identities=29% Similarity=0.455 Sum_probs=196.1
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
..|+++||+++|. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++| .+|+|.
T Consensus 6 ~~l~i~~ls~~y~-----------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~ 66 (275)
T 3gfo_A 6 YILKVEELNYNYS-----------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRIL 66 (275)
T ss_dssp EEEEEEEEEEECT-----------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEE
T ss_pred cEEEEEEEEEEEC-----------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEE
Confidence 4699999999882 234599999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC--h---hhhcccEEEEecCCC-cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 97 VNDRPMD--A---EHFRRISGYVTQDDA-LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 97 ~~g~~~~--~---~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
++|+++. . ..+++.+|||+|++. .+..+||+||+.++.... ..++++..++++++++.+||.+..++.++
T Consensus 67 ~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM--KLPEDEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp ETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred ECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 9999873 2 345678999999963 344789999999987542 23566777889999999999999999887
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++ ++.++||++++|
T Consensus 143 ----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l 217 (275)
T 3gfo_A 143 ----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVM 217 (275)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 899999999999999999999999999999999999999999999997334899999999998 488999999999
Q ss_pred cCCeEEEecChhhHH
Q 046991 251 SNGFVVHNGTLNHLE 265 (612)
Q Consensus 251 ~~G~iv~~G~~~~~~ 265 (612)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 218 KEGRVILQGNPKEVF 232 (275)
T ss_dssp ETTEEEEEECHHHHT
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998864
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.8e-50 Score=409.21 Aligned_cols=218 Identities=28% Similarity=0.476 Sum_probs=195.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++++|+||||++++||+++|+||||||||||+|+|+|+++| .+|+|.+
T Consensus 24 ~l~i~~l~~~y------------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~ 83 (263)
T 2olj_A 24 MIDVHQLKKSF------------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIII 83 (263)
T ss_dssp SEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEE
T ss_pred eEEEEeEEEEE------------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEE
Confidence 59999999988 446799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCC--h---hhhcccEEEEecCCCcCCCCCHHHHHHHHH-HccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046991 98 NDRPMD--A---EHFRRISGYVTQDDALFPLLTVEETLMCSA-LLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGS 171 (612)
Q Consensus 98 ~g~~~~--~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 171 (612)
+|+++. . ..+++.+|||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+..+++++
T Consensus 84 ~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 158 (263)
T 2olj_A 84 DGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR--KWPREKAEAKAMELLDKVGLKDKAHAYPD--- 158 (263)
T ss_dssp TTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHTTCGGGTTSCGG---
T ss_pred CCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCChh---
Confidence 999873 1 235678999999999999999999999864 322 22345556789999999999998888887
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|+
T Consensus 159 ---~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~l~ 233 (263)
T 2olj_A 159 ---SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG-FAREVGDRVLFMD 233 (263)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999765 899999999997 4888999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|+++++.
T Consensus 234 ~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 234 GGYIIEEGKPEDLF 247 (263)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4e-50 Score=409.38 Aligned_cols=218 Identities=27% Similarity=0.413 Sum_probs=195.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+++| .+|+|.+
T Consensus 6 ~l~i~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~ 65 (262)
T 1b0u_A 6 KLHVIDLHKRY------------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIV 65 (262)
T ss_dssp CEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEE
T ss_pred eEEEeeEEEEE------------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 69999999988 446799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh----------------hhhcccEEEEecCCCcCCCCCHHHHHHHHH-HccCCCCCHHHHHHHHHHHHHHcCCc
Q 046991 98 NDRPMDA----------------EHFRRISGYVTQDDALFPLLTVEETLMCSA-LLRLTAGRRKQAASRVRGLLKELGLD 160 (612)
Q Consensus 98 ~g~~~~~----------------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~v~~~l~~lgL~ 160 (612)
+|+++.. ..+++.+|||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.
T Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~ 143 (262)
T 1b0u_A 66 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGID 143 (262)
T ss_dssp TTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc--CCCHHHHHHHHHHHHHHcCCC
Confidence 9998751 234678999999999999999999999864 322 223455567899999999999
Q ss_pred cc-ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH
Q 046991 161 HV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR 239 (612)
Q Consensus 161 ~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~ 239 (612)
+. .+++++ +|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ +
T Consensus 144 ~~~~~~~~~------~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~ 215 (262)
T 1b0u_A 144 ERAQGKYPV------HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-F 215 (262)
T ss_dssp HHHHTSCGG------GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH-H
T ss_pred chhhcCCcc------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-H
Confidence 88 888887 89999999999999999999999999999999999999999999999765 899999999997 4
Q ss_pred HHhccCeEEEEcCCeEEEecChhhHH
Q 046991 240 ILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 240 i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
+.++||++++|++|+++..|+++++.
T Consensus 216 ~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 216 ARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 88899999999999999999988764
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.4e-50 Score=411.59 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=196.5
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++||++.+ +++++|+|||+++++||+++|+||||||||||+|+|+|+.+| .+|+|
T Consensus 9 ~~~l~~~~l~~~~------------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I 68 (266)
T 4g1u_C 9 VALLEASHLHYHV------------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGEC 68 (266)
T ss_dssp CCEEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEE
T ss_pred cceEEEEeEEEEe------------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEE
Confidence 4579999999988 457799999999999999999999999999999999999987 79999
Q ss_pred EECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 96 LVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
.++|+++.. ...++.++|++|++.+++.+||+||+.++.... ..++.+++++++++.+||.+..++.++
T Consensus 69 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 69 HLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY----GGSQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp EETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----CSTTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred EECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----CcHHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999998753 456678999999999988899999999875432 122345678999999999999898887
Q ss_pred CCccChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 173 NCGISGGERRRASIGVDLVH------DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+|||||||||+|||||+. +|++|||||||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||+
T Consensus 141 --~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~ 217 (266)
T 4g1u_C 141 --VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADR 217 (266)
T ss_dssp --GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSE
T ss_pred --cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCE
Confidence 899999999999999999 999999999999999999999999999998776789999999998 58889999
Q ss_pred EEEEcCCeEEEecChhhH
Q 046991 247 LVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~ 264 (612)
+++|++|++++.|+++++
T Consensus 218 v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 218 IMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp EEEEETTEEEEEECHHHH
T ss_pred EEEEECCEEEEEcCHHHH
Confidence 999999999999999886
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.4e-50 Score=397.52 Aligned_cols=212 Identities=33% Similarity=0.465 Sum_probs=189.4
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 4 ~l~~~~l~~~y------------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 63 (224)
T 2pcj_A 4 ILRAENIKKVI------------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFL 63 (224)
T ss_dssp EEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEE
T ss_pred EEEEEeEEEEE------------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE
Confidence 58999999988 346799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh---h---hhc-ccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 98 NDRPMDA---E---HFR-RISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 98 ~g~~~~~---~---~~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
+|+++.. . .++ +.++||+|++.+++.+||+||+.++.... ..++++..++++++++.+||.+..+++++
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (224)
T 2pcj_A 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--GKPKKEAKERGEYLLSELGLGDKLSRKPY-- 139 (224)
T ss_dssp TTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCGG--
T ss_pred CCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChh--
Confidence 9998742 1 223 67999999999999999999999876543 12345556789999999999998888887
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++. + ++||++++|
T Consensus 140 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~-~-~~~d~v~~l 212 (224)
T 2pcj_A 140 ----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHEREL-A-ELTHRTLEM 212 (224)
T ss_dssp ----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH-H-TTSSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH-H-HhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999765 8999999999863 5 899999999
Q ss_pred cCCeEEEecC
Q 046991 251 SNGFVVHNGT 260 (612)
Q Consensus 251 ~~G~iv~~G~ 260 (612)
++|++++.|+
T Consensus 213 ~~G~i~~~g~ 222 (224)
T 2pcj_A 213 KDGKVVGEIT 222 (224)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEee
Confidence 9999999885
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-49 Score=403.77 Aligned_cols=222 Identities=31% Similarity=0.429 Sum_probs=197.3
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+.-.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+
T Consensus 12 ~~~~l~i~~l~~~y------------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~ 71 (256)
T 1vpl_A 12 HMGAVVVKDLRKRI------------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGI 71 (256)
T ss_dssp --CCEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEE
T ss_pred cCCeEEEEEEEEEE------------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceE
Confidence 55679999999988 446799999999999999999999999999999999999977 7999
Q ss_pred EEECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046991 95 LLVNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSS 172 (612)
Q Consensus 95 I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 172 (612)
|.++|+++.. ...++.+|||+|++.+++.+||+||+.+..... ..+.++..++++++++.+||.+..+++++
T Consensus 72 I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 145 (256)
T 1vpl_A 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY--ASSSSEIEEMVERATEIAGLGEKIKDRVS---- 145 (256)
T ss_dssp EEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred EEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCCchHhcCChh----
Confidence 9999998753 345678999999999999999999999875432 12344556788999999999999999887
Q ss_pred CCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 173 NCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 173 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||++++|++
T Consensus 146 --~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~-~~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 146 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNML-EVEFLCDRIALIHN 221 (256)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHH-HHTTTCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HHHHHCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999975 4899999999997 48889999999999
Q ss_pred CeEEEecChhhHHH
Q 046991 253 GFVVHNGTLNHLEE 266 (612)
Q Consensus 253 G~iv~~G~~~~~~~ 266 (612)
|++++.|+++++.+
T Consensus 222 G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 222 GTIVETGTVEELKE 235 (256)
T ss_dssp TEEEEEEEHHHHHH
T ss_pred CEEEEecCHHHHHH
Confidence 99999999888754
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-49 Score=420.73 Aligned_cols=223 Identities=26% Similarity=0.396 Sum_probs=200.8
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++||+++|+ +++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+
T Consensus 11 ~~~~l~~~~l~~~y~-----------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~ 71 (355)
T 1z47_A 11 GSMTIEFVGVEKIYP-----------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGD 71 (355)
T ss_dssp CCEEEEEEEEEECCT-----------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEE
T ss_pred CCceEEEEEEEEEEc-----------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccE
Confidence 456899999998761 345699999999999999999999999999999999999987 7999
Q ss_pred EEECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046991 95 LLVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSN 173 (612)
Q Consensus 95 I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 173 (612)
|.++|+++.. ...++.+|||+|+..+++.+||+||+.|+...+ +.++++.+++++++++.+||++..+++++
T Consensus 72 I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~r~~~----- 144 (355)
T 1z47_A 72 VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK--RVPKDEMDARVRELLRFMRLESYANRFPH----- 144 (355)
T ss_dssp EEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----
T ss_pred EEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----
Confidence 9999998753 234678999999999999999999999986543 22456667889999999999999999887
Q ss_pred CccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 174 CGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|+|+|++|||++ ++..+||++++|++|
T Consensus 145 -~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G 222 (355)
T 1z47_A 145 -ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEG 222 (355)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETT
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999997766899999999998 588999999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
+++..|+++++.
T Consensus 223 ~i~~~g~~~~l~ 234 (355)
T 1z47_A 223 NVEQFGTPEEVY 234 (355)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6.2e-50 Score=406.97 Aligned_cols=219 Identities=23% Similarity=0.395 Sum_probs=193.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+++| .+|+|.
T Consensus 6 ~~l~i~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~ 65 (257)
T 1g6h_A 6 EILRTENIVKYF------------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVY 65 (257)
T ss_dssp EEEEEEEEEEEE------------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEE
T ss_pred cEEEEeeeEEEE------------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 369999999988 446799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh----hhhcccEEEEecCCCcCCCCCHHHHHHHHHHc-cCC----------CCCHHHHHHHHHHHHHHcCCcc
Q 046991 97 VNDRPMDA----EHFRRISGYVTQDDALFPLLTVEETLMCSALL-RLT----------AGRRKQAASRVRGLLKELGLDH 161 (612)
Q Consensus 97 ~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~~~----------~~~~~~~~~~v~~~l~~lgL~~ 161 (612)
++|+++.. ...++.++||+|++.+++.+||+||+.++... ... ....++.+++++++++.+||++
T Consensus 66 ~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 145 (257)
T 1g6h_A 66 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145 (257)
T ss_dssp ETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG
T ss_pred ECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch
Confidence 99998743 23456799999999999999999999886432 111 0122345678899999999999
Q ss_pred cccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH
Q 046991 162 VASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL 241 (612)
Q Consensus 162 ~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~ 241 (612)
..++.++ +|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ ++.
T Consensus 146 ~~~~~~~------~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-~~~ 217 (257)
T 1g6h_A 146 LYDRKAG------ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD-IVL 217 (257)
T ss_dssp GTTSBGG------GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS-TTG
T ss_pred hhCCCch------hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHH
Confidence 9999887 89999999999999999999999999999999999999999999999765 899999999998 488
Q ss_pred hccCeEEEEcCCeEEEecChhh
Q 046991 242 ELFDRLVLLSNGFVVHNGTLNH 263 (612)
Q Consensus 242 ~~~D~v~lL~~G~iv~~G~~~~ 263 (612)
++||++++|++|++++.|++++
T Consensus 218 ~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 218 NYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp GGCSEEEEEETTEEEEEEESHH
T ss_pred HhCCEEEEEECCEEEEEeCHHH
Confidence 8999999999999999999887
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-49 Score=420.73 Aligned_cols=219 Identities=28% Similarity=0.427 Sum_probs=197.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.+
T Consensus 3 ~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i 62 (359)
T 2yyz_A 3 SIRVVNLKKYF------------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYF 62 (359)
T ss_dssp CEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred EEEEEEEEEEE------------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEE
Confidence 58999999988 456799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.+|||+|++.+++.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..+++++ +|
T Consensus 63 ~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~------~L 134 (359)
T 2yyz_A 63 DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR--RISKDEVEKRVVEIARKLLIDNLLDRKPT------QL 134 (359)
T ss_dssp TTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS--CSHHHHTTHHHHHHHHHTTCGGGTTSCGG------GS
T ss_pred CCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCChh------hC
Confidence 9998753 233578999999999999999999999875432 22344556789999999999999999887 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..+||++++|++|+++
T Consensus 135 SgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997766899999999997 588999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 214 ~~g~~~~l~ 222 (359)
T 2yyz_A 214 QYGTPDEVY 222 (359)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHH
Confidence 999998874
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-49 Score=420.63 Aligned_cols=219 Identities=30% Similarity=0.472 Sum_probs=198.3
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.+
T Consensus 3 ~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i 62 (362)
T 2it1_A 3 EIKLENIVKKF------------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYF 62 (362)
T ss_dssp CEEEEEEEEES------------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred EEEEEeEEEEE------------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEE
Confidence 48999999887 456799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.+|||+|+..+++.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..+++++ +|
T Consensus 63 ~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~------~L 134 (362)
T 2it1_A 63 DEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR--KAPREEIDKKVREVAKMLHIDKLLNRYPW------QL 134 (362)
T ss_dssp TTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCGG------GS
T ss_pred CCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhhCChh------hC
Confidence 9998753 223578999999999999999999999986543 22456667889999999999999999887 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..+||++++|++|+++
T Consensus 135 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEIL 213 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997666899999999997 588999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 214 ~~g~~~~~~ 222 (362)
T 2it1_A 214 QVGTPDEVY 222 (362)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999998874
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.4e-49 Score=420.37 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=198.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.+
T Consensus 3 ~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i 62 (372)
T 1g29_1 3 GVRLVDVWKVF------------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYI 62 (372)
T ss_dssp EEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred EEEEEeEEEEE------------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEE
Confidence 58999999988 456799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh-------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046991 98 NDRPMDA-------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGG 170 (612)
Q Consensus 98 ~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 170 (612)
+|+++.. ...++.+|||+|+..+++.+||+||+.|+...+ +.++++.+++++++++.+||.+..+++++
T Consensus 63 ~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-- 138 (372)
T 1g29_1 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLTELLNRKPR-- 138 (372)
T ss_dssp TTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTCGGGTTCCGG--
T ss_pred CCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCCcc--
Confidence 9988632 123577999999999999999999999986543 22456667889999999999999999887
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..+||++++|
T Consensus 139 ----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl 213 (372)
T 1g29_1 139 ----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVM 213 (372)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 899999999999999999999999999999999999999999999997766899999999997 588999999999
Q ss_pred cCCeEEEecChhhHH
Q 046991 251 SNGFVVHNGTLNHLE 265 (612)
Q Consensus 251 ~~G~iv~~G~~~~~~ 265 (612)
++|+++..|+++++.
T Consensus 214 ~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 214 NRGVLQQVGSPDEVY 228 (372)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred eCCEEEEeCCHHHHH
Confidence 999999999998874
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-49 Score=420.20 Aligned_cols=219 Identities=32% Similarity=0.433 Sum_probs=197.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKF--ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
+|+++||+++| +++. +|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|
T Consensus 3 ~l~i~~l~~~y------------------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I 62 (353)
T 1oxx_K 3 RIIVKNVSKVF------------------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGEL 62 (353)
T ss_dssp CEEEEEEEEEE------------------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEE
T ss_pred EEEEEeEEEEE------------------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEE
Confidence 58999999988 3456 99999999999999999999999999999999999987 79999
Q ss_pred EECCeeCCh------hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 046991 96 LVNDRPMDA------EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG 169 (612)
Q Consensus 96 ~~~g~~~~~------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 169 (612)
.++|+++.. ...++.+|||+|++.+++.+||+||+.|+...+ +.++++.+++++++++.+||.+..+++++
T Consensus 63 ~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~~~~~- 139 (353)
T 1oxx_K 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM--KMSKEEIRKRVEEVAKILDIHHVLNHFPR- 139 (353)
T ss_dssp EETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS--SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred EECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchHhcCChh-
Confidence 999988632 234678999999999999999999999875432 22456667889999999999999999887
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..+||++++
T Consensus 140 -----~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~v 213 (353)
T 1oxx_K 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213 (353)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 899999999999999999999999999999999999999999999997666899999999998 58899999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|+++..|+++++.
T Consensus 214 l~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 214 LVKGKLVQVGKPEDLY 229 (353)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998864
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-49 Score=397.53 Aligned_cols=218 Identities=26% Similarity=0.385 Sum_probs=191.4
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||+++| +++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.
T Consensus 5 ~~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 64 (240)
T 1ji0_A 5 IVLEVQSLHVYY------------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKII 64 (240)
T ss_dssp EEEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEE
T ss_pred ceEEEEeEEEEE------------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEE
Confidence 369999999988 346799999999999999999999999999999999999977 799999
Q ss_pred ECCeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCC
Q 046991 97 VNDRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELG-LDHVASSRIGGGS 171 (612)
Q Consensus 97 ~~g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~ 171 (612)
++|+++.. .. .++.++||+|++.+++.+||+||+.++.... ...++..++++++++.++ |.+..++.++
T Consensus 65 ~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~l~~~~~l~~~~~~~~~--- 138 (240)
T 1ji0_A 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR---KDKEGIKRDLEWIFSLFPRLKERLKQLGG--- 138 (240)
T ss_dssp ETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC---CCSSHHHHHHHHHHHHCHHHHTTTTSBSS---
T ss_pred ECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC---CCHHHHHHHHHHHHHHcccHhhHhcCChh---
Confidence 99998743 22 3456999999999999999999998863211 122344567889999995 9888888876
Q ss_pred CCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 172 SNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 172 ~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||++++|+
T Consensus 139 ---~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL-GALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH-HHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999975 5899999999997 4889999999999
Q ss_pred CCeEEEecChhhHH
Q 046991 252 NGFVVHNGTLNHLE 265 (612)
Q Consensus 252 ~G~iv~~G~~~~~~ 265 (612)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999987763
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.4e-49 Score=419.75 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=191.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.+
T Consensus 11 ~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i 70 (372)
T 1v43_A 11 EVKLENLTKRF------------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYF 70 (372)
T ss_dssp CEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred eEEEEEEEEEE------------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEE
Confidence 59999999988 446799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.+|||+|+..+++.+||+||+.|+...+ +.++++.+++++++++.+||.+..+++++ +|
T Consensus 71 ~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~------~L 142 (372)
T 1v43_A 71 GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK--KFPKDEIDKRVRWAAELLQIEELLNRYPA------QL 142 (372)
T ss_dssp TTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT------TC
T ss_pred CCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhcCChh------hC
Confidence 9998753 223577999999999999999999999874322 23456667889999999999999998886 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..+||++++|++|+++
T Consensus 143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997766899999999997 588999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 222 ~~g~~~~l~ 230 (372)
T 1v43_A 222 QIGSPTEVY 230 (372)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHH
Confidence 999998874
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.5e-49 Score=414.95 Aligned_cols=215 Identities=26% Similarity=0.429 Sum_probs=193.9
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~y------------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~ 59 (348)
T 3d31_A 1 MIEIESLSRKW------------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILL 59 (348)
T ss_dssp CEEEEEEEEEC------------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEE
T ss_pred CEEEEEEEEEE------------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEE
Confidence 47899999887 445 99999999999999999999999999999999999987 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.+|||+|++.+++.+||+||+.|+...+.. +++ ++++++++.+||++..+++++ +|
T Consensus 60 ~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~--~~~---~~v~~~l~~~~L~~~~~~~~~------~L 128 (348)
T 3d31_A 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI--KDP---KRVLDTARDLKIEHLLDRNPL------TL 128 (348)
T ss_dssp TTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC--CCH---HHHHHHHHHTTCTTTTTSCGG------GS
T ss_pred CCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC--CHH---HHHHHHHHHcCCchHhcCChh------hC
Confidence 9998753 23457899999999999999999999998654311 111 678999999999999999887 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..++|++++|++|+++
T Consensus 129 SgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLI 207 (348)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998777899999999997 588999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
..|+++++.
T Consensus 208 ~~g~~~~~~ 216 (348)
T 3d31_A 208 QVGKPEEIF 216 (348)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999998764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-49 Score=395.95 Aligned_cols=214 Identities=28% Similarity=0.418 Sum_probs=189.6
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| ++ +|+|+|+++++ |+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~y------------------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 57 (240)
T 2onk_A 1 MFLKVRAEKRL------------------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRL 57 (240)
T ss_dssp CCEEEEEEEEE------------------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEE
T ss_pred CEEEEEEEEEe------------------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEE
Confidence 37899999988 22 49999999999 99999999999999999999999977 7999999
Q ss_pred CCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc
Q 046991 98 NDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L 176 (612)
+|+++.. ...++.+|||+|++.+++.+||+||+.++.... .....+++++++++.+||.+..+++++ +|
T Consensus 58 ~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~------~L 127 (240)
T 2onk_A 58 NGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV----ERVERDRRVREMAEKLGIAHLLDRKPA------RL 127 (240)
T ss_dssp TTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS----CHHHHHHHHHHHHHTTTCTTTTTCCGG------GS
T ss_pred CCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc----CCchHHHHHHHHHHHcCCHHHhcCChh------hC
Confidence 9998753 334678999999999999999999998764221 122236778999999999988888887 89
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEE
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVV 256 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv 256 (612)
|||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|+++
T Consensus 128 SgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997655899999999997 488999999999999999
Q ss_pred EecChhhHH
Q 046991 257 HNGTLNHLE 265 (612)
Q Consensus 257 ~~G~~~~~~ 265 (612)
+.|+++++.
T Consensus 207 ~~g~~~~~~ 215 (240)
T 2onk_A 207 EKGKLKELF 215 (240)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2e-48 Score=397.81 Aligned_cols=223 Identities=30% Similarity=0.401 Sum_probs=192.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++|... +...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.+
T Consensus 2 ~l~~~~l~~~y~~~-------------~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~ 66 (266)
T 2yz2_A 2 RIEVVNVSHIFHRG-------------TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLY 66 (266)
T ss_dssp CEEEEEEEEEESTT-------------STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEE
T ss_pred EEEEEEEEEEecCC-------------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE
Confidence 58999999988200 00015799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 046991 98 NDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD--HVASSRIGGGSSNC 174 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~ 174 (612)
+|+++....+++.+|||+|++ ..++.+||+||+.++..... +.++.+++++++++.+||. +..++.++
T Consensus 67 ~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~------ 137 (266)
T 2yz2_A 67 DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY---PDRDPVPLVKKAMEFVGLDFDSFKDRVPF------ 137 (266)
T ss_dssp TTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC---TTSCSHHHHHHHHHHTTCCHHHHTTCCGG------
T ss_pred CCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC---CHHHHHHHHHHHHHHcCcCCcccccCChh------
Confidence 999886445677899999995 56677999999998643211 1222346789999999999 88888886
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++. +.++||++++|++|+
T Consensus 138 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~-~~~~~d~v~~l~~G~ 215 (266)
T 2yz2_A 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIET-VINHVDRVVVLEKGK 215 (266)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTT-TGGGCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999765 8999999999984 788999999999999
Q ss_pred EEEecChhhHHH
Q 046991 255 VVHNGTLNHLEE 266 (612)
Q Consensus 255 iv~~G~~~~~~~ 266 (612)
++..|+++++.+
T Consensus 216 i~~~g~~~~~~~ 227 (266)
T 2yz2_A 216 KVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEeCCHHHHhc
Confidence 999999888754
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-48 Score=400.52 Aligned_cols=220 Identities=26% Similarity=0.374 Sum_probs=189.8
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||+++| +++++|+||||++++||+++|+||||||||||+|+|+|+++| .+|+|.
T Consensus 20 ~~l~~~~l~~~y------------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~ 79 (279)
T 2ihy_A 20 MLIQLDQIGRMK------------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVN 79 (279)
T ss_dssp EEEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEE
T ss_pred ceEEEEeEEEEE------------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEE
Confidence 369999999988 446799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC-----hhhhcccEEEEecCCCc--CCCCCHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046991 97 VNDRPMD-----AEHFRRISGYVTQDDAL--FPLLTVEETLMCSALL--RLTAGRRKQAASRVRGLLKELGLDHVASSRI 167 (612)
Q Consensus 97 ~~g~~~~-----~~~~~~~i~yv~Q~~~l--~~~lTv~E~l~~~~~l--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 167 (612)
++|+++. ...+++.+|||+|++.+ .+.+||+||+.++... .......++..++++++++.+||.+..++++
T Consensus 80 ~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp ETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred ECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh
Confidence 9998874 23467789999999754 3457999999875311 1111112344577899999999999999988
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEE--EEEccCCchHHHhccC
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTI--ILTIHQPGFRILELFD 245 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~ti--i~~~H~~~~~i~~~~D 245 (612)
+ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|| |++|||++ ++.++||
T Consensus 160 ~------~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d 231 (279)
T 2ihy_A 160 G------YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFS 231 (279)
T ss_dssp G------GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCC
T ss_pred h------hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCC
Confidence 7 89999999999999999999999999999999999999999999999766 8899 99999998 4788999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|++++.|+++++
T Consensus 232 ~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 232 KILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEEEETTEEEEEEEHHHH
T ss_pred EEEEEECCEEEEECCHHHH
Confidence 9999999999999998765
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-47 Score=388.74 Aligned_cols=218 Identities=26% Similarity=0.309 Sum_probs=183.1
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCceeeEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK--ISSRKVSGKL 95 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~--~~~~~~~G~I 95 (612)
+|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|+ .+| .+|+|
T Consensus 3 ~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p--~~G~I 62 (250)
T 2d2e_A 3 QLEIRDLWASI------------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEI 62 (250)
T ss_dssp EEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE--EEEEE
T ss_pred eEEEEeEEEEE------------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEE
Confidence 58999999988 346799999999999999999999999999999999998 444 79999
Q ss_pred EECCeeCCh---hh-hcccEEEEecCCCcCCCCCHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHHHcCC-cccccccccC
Q 046991 96 LVNDRPMDA---EH-FRRISGYVTQDDALFPLLTVEETLMCSALL-RLTAGRRKQAASRVRGLLKELGL-DHVASSRIGG 169 (612)
Q Consensus 96 ~~~g~~~~~---~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~ 169 (612)
.++|+++.. .. .++.++||+|++.+++.+||+||+.+.... .......++..++++++++.+|| .+..++.++
T Consensus 63 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~- 141 (250)
T 2d2e_A 63 LLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN- 141 (250)
T ss_dssp EETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-
T ss_pred EECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-
Confidence 999998742 22 245689999999999999999999886531 11111234456778999999999 578888886
Q ss_pred CCCCCc-cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc-cCeE
Q 046991 170 GSSNCG-ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL-FDRL 247 (612)
Q Consensus 170 ~~~~~~-LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~D~v 247 (612)
+ ||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ ||++
T Consensus 142 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~-~~~~~~d~v 214 (250)
T 2d2e_A 142 -----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI-LNYIQPDKV 214 (250)
T ss_dssp -----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG-GGTSCCSEE
T ss_pred -----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCCEE
Confidence 6 999999999999999999999999999999999999999999999864 58999999999984 7777 5999
Q ss_pred EEEcCCeEEEecChhh
Q 046991 248 VLLSNGFVVHNGTLNH 263 (612)
Q Consensus 248 ~lL~~G~iv~~G~~~~ 263 (612)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.9e-47 Score=387.01 Aligned_cols=230 Identities=24% Similarity=0.324 Sum_probs=192.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++||+++| +++++|+|||+++++||+++|+||||||||||+|+|+|+....+.+|+|.+
T Consensus 20 ~l~~~~l~~~y------------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~ 81 (267)
T 2zu0_C 20 MLSIKDLHVSV------------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81 (267)
T ss_dssp CEEEEEEEEEE------------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred eEEEEeEEEEE------------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 69999999988 446799999999999999999999999999999999999532247999999
Q ss_pred CCeeCCh---hhh-cccEEEEecCCCcCCCCCHHHHHHHHHH-c----cCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046991 98 NDRPMDA---EHF-RRISGYVTQDDALFPLLTVEETLMCSAL-L----RLTAGRRKQAASRVRGLLKELGLD-HVASSRI 167 (612)
Q Consensus 98 ~g~~~~~---~~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 167 (612)
+|+++.. ... ++.++||+|++.+++.+||.|++.+... . ..+..+.++..++++++++.+||. +..++.+
T Consensus 82 ~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp TTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred CCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 9998742 222 3459999999999999999999987541 1 111123445567899999999996 5677776
Q ss_pred cCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc-cCe
Q 046991 168 GGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL-FDR 246 (612)
Q Consensus 168 g~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~-~D~ 246 (612)
+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ ||+
T Consensus 162 ~-----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~-~~~~~~d~ 234 (267)
T 2zu0_C 162 N-----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDY 234 (267)
T ss_dssp T-----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG-GGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH-HHhhcCCE
Confidence 4 14999999999999999999999999999999999999999999999864 58999999999974 6665 899
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhCCC
Q 046991 247 LVLLSNGFVVHNGTLNHLEERLKSAGH 273 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~~f~~~g~ 273 (612)
+++|++|++++.|+++++.. +.+.++
T Consensus 235 v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 235 VHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 99999999999999987653 344443
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.2e-47 Score=383.76 Aligned_cols=209 Identities=26% Similarity=0.423 Sum_probs=184.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccC-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKD-PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
+|+++||+++| + ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.
T Consensus 4 ~l~i~~l~~~y------------------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~ 63 (253)
T 2nq2_C 4 ALSVENLGFYY------------------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE 63 (253)
T ss_dssp EEEEEEEEEEE------------------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE
T ss_pred eEEEeeEEEEe------------------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 58999999988 3 46799999999999999999999999999999999999987 799998
Q ss_pred ECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 97 VNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 97 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
+++.++||+|++.+++.+||+||+.++...... ....++..++++++++.+||.+..++.++
T Consensus 64 ----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 127 (253)
T 2nq2_C 64 ----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT------ 127 (253)
T ss_dssp ----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred ----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh------
Confidence 346799999999999999999999986432111 01123445778999999999998888887
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+
T Consensus 128 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN 206 (253)
T ss_dssp GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe
Confidence 899999999999999999999999999999999999999999999997655899999999997 4788999999999999
Q ss_pred EEEecChhhH
Q 046991 255 VVHNGTLNHL 264 (612)
Q Consensus 255 iv~~G~~~~~ 264 (612)
++.|+++++
T Consensus 207 -~~~g~~~~~ 215 (253)
T 2nq2_C 207 -FKFGETRNI 215 (253)
T ss_dssp -EEEEEHHHH
T ss_pred -EecCCHHHH
Confidence 999988775
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.4e-47 Score=390.63 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=185.1
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
.+|+++||++.|. ..+++.+|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.
T Consensus 15 ~~l~~~~l~~~y~---------------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~ 77 (271)
T 2ixe_A 15 GLVKFQDVSFAYP---------------NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVL 77 (271)
T ss_dssp CCEEEEEEEECCT---------------TCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEE
T ss_pred ceEEEEEEEEEeC---------------CCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEE
Confidence 3699999998872 00126799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHH-----HHHHHHHHHHHc--CCccccccc
Q 046991 97 VNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQ-----AASRVRGLLKEL--GLDHVASSR 166 (612)
Q Consensus 97 ~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ 166 (612)
++|+++.. ..+++.++||+|++.+++ .||+||+.++... . ...++ ....++++++.+ |+.+..++.
T Consensus 78 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~ 153 (271)
T 2ixe_A 78 LDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR--T-PTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153 (271)
T ss_dssp ETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS--C-CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG
T ss_pred ECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc--C-ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC
Confidence 99998742 345678999999999887 5999999875321 1 11111 123356778888 787777777
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++. +. .||+
T Consensus 154 ~~------~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~-~~d~ 225 (271)
T 2ixe_A 154 GN------QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AE-RAHH 225 (271)
T ss_dssp GT------TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HT-TCSE
T ss_pred cC------CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HH-hCCE
Confidence 75 8999999999999999999999999999999999999999999999865568999999999873 54 5999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|+++..|+++++.
T Consensus 226 v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 226 ILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998764
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.6e-46 Score=379.55 Aligned_cols=197 Identities=26% Similarity=0.388 Sum_probs=177.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCCCCH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
++|+|+|+++++||+++|+||||||||||+|+|+|+++| . |+|.++|+++. ...+++.++||+|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 489999999999999999999999999999999999977 7 99999999864 24466789999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCC-------EEEE
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA-------VVLI 199 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~-------lllL 199 (612)
+||+.++.. .... .++++++++.+||.+..++.++ +||||||||++||++|+.+|+ +|+|
T Consensus 91 ~e~l~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQH---DKTR----TELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCS---STTC----HHHHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhc---cCCc----HHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999987521 1111 4678899999999998888886 899999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999765 899999999997 47899999999999999999988775
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.2e-46 Score=390.57 Aligned_cols=217 Identities=26% Similarity=0.475 Sum_probs=183.4
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++||+++|+ +++.+|+||||++++||++||+||||||||||+++|+|+++| .+|+|
T Consensus 51 ~~~i~~~~vs~~y~-----------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I 111 (306)
T 3nh6_A 51 KGRIEFENVHFSYA-----------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCI 111 (306)
T ss_dssp SCCEEEEEEEEESS-----------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEE
T ss_pred CCeEEEEEEEEEcC-----------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEE
Confidence 34699999999883 346799999999999999999999999999999999999987 79999
Q ss_pred EECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------ccc
Q 046991 96 LVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASS 165 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~ 165 (612)
.+||+++.. ..+|+.+|||+|++.+|+ .||+||+.++... ... ++++++++.+++.+. .++
T Consensus 112 ~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t 182 (306)
T 3nh6_A 112 RIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT----AGN----DEVEAAAQAAGIHDAIMAFPEGYRT 182 (306)
T ss_dssp EETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT----CCH----HHHHHHHHHHTCHHHHHHSTTGGGC
T ss_pred EECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc----CCH----HHHHHHHHHhCcHHHHHhccchhhh
Confidence 999998753 567889999999999986 4999999875321 122 345566666666543 344
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ +...+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+++|+++. +.. ||
T Consensus 183 ~~~--~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~-~~~-aD 256 (306)
T 3nh6_A 183 QVG--ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLST-VVN-AD 256 (306)
T ss_dssp EES--TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHH-HHT-CS
T ss_pred Hhc--CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHH-HHc-CC
Confidence 453 34458999999999999999999999999999999999999999999999853 6899999999974 654 99
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~~ 266 (612)
+|++|++|++++.|+++++.+
T Consensus 257 ~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 257 QILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998754
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-46 Score=380.23 Aligned_cols=220 Identities=25% Similarity=0.454 Sum_probs=184.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
+...++++||+++|+ .+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+
T Consensus 4 ~~~~~~~~~l~~~y~----------------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~ 65 (247)
T 2ff7_A 4 HHHDITFRNIRFRYK----------------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQ 65 (247)
T ss_dssp -CEEEEEEEEEEESS----------------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEE
T ss_pred ccCceeEEEEEEEeC----------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcE
Confidence 456899999998872 1245799999999999999999999999999999999999987 7999
Q ss_pred EEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC--
Q 046991 95 LLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG-- 169 (612)
Q Consensus 95 I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-- 169 (612)
|.++|+++.. ..+++.++||+|++.+++ .||+||+.++. +... .++++++++.+++.+..++.+.+
T Consensus 66 I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----PGMS----VEKVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp EEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGG
T ss_pred EEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----CCCC----HHHHHHHHHHhChHHHHHhCcchhh
Confidence 9999998743 346678999999998887 59999998742 1111 24567788888887665543210
Q ss_pred ---CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 170 ---GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 170 ---~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+..+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ + |+|||++||+++. + +.||+
T Consensus 137 ~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~-~-~~~d~ 212 (247)
T 2ff7_A 137 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLST-V-KNADR 212 (247)
T ss_dssp CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGG-G-TTSSE
T ss_pred hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHH-H-HhCCE
Confidence 22345899999999999999999999999999999999999999999999984 4 8999999999974 5 46999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-46 Score=371.09 Aligned_cols=204 Identities=19% Similarity=0.333 Sum_probs=177.1
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
++..|+++|++++| ++ ++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+
T Consensus 7 ~~~~l~~~~ls~~y------------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~ 65 (214)
T 1sgw_A 7 HGSKLEIRDLSVGY------------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGE 65 (214)
T ss_dssp --CEEEEEEEEEES------------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEE
T ss_pred CCceEEEEEEEEEe------------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeE
Confidence 67789999999887 34 799999999999999999999999999999999999977 7999
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|.++|+++. ..++.++||+|++.+++.+||+||+.++....... .+ .++++++++.+||++. ++++.
T Consensus 66 I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~---~~-~~~~~~~l~~~gl~~~-~~~~~------ 132 (214)
T 1sgw_A 66 IIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK---VN-KNEIMDALESVEVLDL-KKKLG------ 132 (214)
T ss_dssp EEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC---CC-HHHHHHHHHHTTCCCT-TSBGG------
T ss_pred EEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc---hH-HHHHHHHHHHcCCCcC-CCChh------
Confidence 999999875 35778999999999999999999999875432101 12 4678899999999988 88776
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++..++|+++++ +|+
T Consensus 133 ~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~ 209 (214)
T 1sgw_A 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STK 209 (214)
T ss_dssp GSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC-
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCc
Confidence 89999999999999999999999999999999999999999999999754 889999999998 488888988755 454
Q ss_pred E
Q 046991 255 V 255 (612)
Q Consensus 255 i 255 (612)
|
T Consensus 210 ~ 210 (214)
T 1sgw_A 210 I 210 (214)
T ss_dssp -
T ss_pred c
Confidence 4
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-45 Score=376.40 Aligned_cols=211 Identities=22% Similarity=0.297 Sum_probs=183.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++|... ...+.+|+|+|++++ ||+++|+||||||||||+|+|+|+. | .+|+|.+
T Consensus 1 ml~~~~l~~~y~~~--------------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~ 62 (263)
T 2pjz_A 1 MIQLKNVGITLSGK--------------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFI 62 (263)
T ss_dssp CEEEEEEEEEEEEE--------------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEE
T ss_pred CEEEEEEEEEeCCC--------------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEE
Confidence 47899999988310 012579999999999 9999999999999999999999999 7 6999999
Q ss_pred CCeeCChhhhcccEE-EEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCc
Q 046991 98 NDRPMDAEHFRRISG-YVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGGGSSNCG 175 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~~ 175 (612)
+|+++.....++.++ ||+|++.+ .+||+||+.+...+. . ..+++++++++.+||. +..+++++ +
T Consensus 63 ~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~------~ 128 (263)
T 2pjz_A 63 NGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK--G----LDRDLFLEMLKALKLGEEILRRKLY------K 128 (263)
T ss_dssp TTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT--C----CCHHHHHHHHHHTTCCGGGGGSBGG------G
T ss_pred CCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc--c----hHHHHHHHHHHHcCCChhHhcCChh------h
Confidence 999874311256799 99999887 789999999875432 1 1235688999999998 88888887 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC-eEEEEcCCe
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD-RLVLLSNGF 254 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D-~v~lL~~G~ 254 (612)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++ . |||++|||++ ++.++|| ++++|++|+
T Consensus 129 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~-~~~~~~d~~i~~l~~G~ 203 (263)
T 2pjz_A 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELD-MLNLYKEYKAYFLVGNR 203 (263)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGG-GGGGCTTSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHH-HHHHhcCceEEEEECCE
Confidence 99999999999999999999999999999999999999999999874 2 9999999998 4788999 999999999
Q ss_pred EEEecChhhHH
Q 046991 255 VVHNGTLNHLE 265 (612)
Q Consensus 255 iv~~G~~~~~~ 265 (612)
+++.|+++++.
T Consensus 204 i~~~g~~~~l~ 214 (263)
T 2pjz_A 204 LQGPISVSELL 214 (263)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEecCHHHHH
Confidence 99999988764
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-46 Score=377.07 Aligned_cols=217 Identities=29% Similarity=0.483 Sum_probs=182.7
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++|+ +++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+
T Consensus 1 ml~~~~l~~~y~-----------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 61 (243)
T 1mv5_A 1 MLSARHVDFAYD-----------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITI 61 (243)
T ss_dssp CEEEEEEEECSS-----------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEE
T ss_pred CEEEEEEEEEeC-----------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEE
Confidence 378999998761 345799999999999999999999999999999999999977 7999999
Q ss_pred CCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-----
Q 046991 98 NDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG----- 169 (612)
Q Consensus 98 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----- 169 (612)
+|+++.. ..+++.++||+|++.+++. ||+||+.++.. +... .++++++++.+++.+..++.+.+
T Consensus 62 ~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 62 DGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE---GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp TTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT---SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred CCEEhhhCCHHHHHhhEEEEcCCCccccc-cHHHHHhhhcc---CCCC----HHHHHHHHHHhChHHHHHhCccchhchh
Confidence 9998743 3456789999999998874 99999986421 1111 24577889999998766554310
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+..+.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++ + |+|||++||+++ .+ +.||++++
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~-~~-~~~d~v~~ 209 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS-TI-VDADKIYF 209 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH-HH-HHCSEEEE
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH-HH-HhCCEEEE
Confidence 22345899999999999999999999999999999999999999999999986 4 899999999987 35 56999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|+++..|+++++.
T Consensus 210 l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 210 IEKGQITGSGKHNELV 225 (243)
T ss_dssp EETTEECCCSCHHHHH
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-45 Score=376.08 Aligned_cols=218 Identities=25% Similarity=0.403 Sum_probs=180.2
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....|+++||+++|. ....+++|+|+|+++++||+++|+||||||||||+|+|+|++++ +|+
T Consensus 14 ~~~~l~i~~l~~~y~---------------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~ 75 (260)
T 2ghi_A 14 FGVNIEFSDVNFSYP---------------KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGD 75 (260)
T ss_dssp HCCCEEEEEEEECCT---------------TCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEE
T ss_pred cCCeEEEEEEEEEeC---------------CCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeE
Confidence 345799999998872 11125699999999999999999999999999999999999863 799
Q ss_pred EEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc-------c
Q 046991 95 LLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA-------S 164 (612)
Q Consensus 95 I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~ 164 (612)
|.++|+++.. ..+++.++||+|++.+++ .||+||+.++. .... .+++.++++.+++.+.. +
T Consensus 76 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~l~~~~~ 146 (260)
T 2ghi_A 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK----LDAT----DEEVIKATKSAQLYDFIEALPKKWD 146 (260)
T ss_dssp EEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC----TTCC----HHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred EEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC----CCCC----HHHHHHHHHHhCCHHHHHhcccccc
Confidence 9999998742 446778999999999886 59999998742 1111 23456777777775442 3
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 165 SRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 165 ~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
+.+ +..+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ + |+|||++||+++. + +.|
T Consensus 147 ~~~--~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~-~-~~~ 220 (260)
T 2ghi_A 147 TIV--GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLST-I-SSA 220 (260)
T ss_dssp CEE--SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGG-S-TTC
T ss_pred ccc--cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-H-HhC
Confidence 333 22345899999999999999999999999999999999999999999999985 3 7899999999974 5 569
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 046991 245 DRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 245 D~v~lL~~G~iv~~G~~~~~~ 265 (612)
|++++|++|+++..|+++++.
T Consensus 221 d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 221 ESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=387.46 Aligned_cols=219 Identities=22% Similarity=0.348 Sum_probs=186.0
Q ss_pred CCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee
Q 046991 14 KALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG 93 (612)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G 93 (612)
+....|+++||+++|. .+++.+|+|||+++++||+++|+||||||||||||+|+|+++ .+|
T Consensus 15 ~~~~~i~~~~l~~~y~----------------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G 75 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYT----------------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEG 75 (390)
T ss_dssp SSSCCEEEEEEEEESS----------------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEE
T ss_pred CCCCeEEEEEEEEEec----------------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCe
Confidence 3445799999999882 134679999999999999999999999999999999999984 589
Q ss_pred EEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccC-
Q 046991 94 KLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGG- 169 (612)
Q Consensus 94 ~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~- 169 (612)
+|.++|+++.. ..+++.+|||+|++.+++ +||+||+.+.. .. ..++++++++.++|.+..++++.+
T Consensus 76 ~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~-----~~----~~~~v~~~l~~~~L~~~~~~~p~~l 145 (390)
T 3gd7_A 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA-----AH----SDQEIWKVADEVGLRSVIEQFPGKL 145 (390)
T ss_dssp EEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC-----CS----CHHHHHHHHHHTTCHHHHTTSTTGG
T ss_pred EEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc-----cc----CHHHHHHHHHHhCCHHHHhhccccc
Confidence 99999998753 456788999999999998 59999996321 11 235678899999999888877651
Q ss_pred ----CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 170 ----GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 170 ----~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
++...+|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. .++|+|++|||++ ....||
T Consensus 146 ~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aD 221 (390)
T 3gd7_A 146 DFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECD 221 (390)
T ss_dssp GCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCS
T ss_pred ccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCC
Confidence 11122499999999999999999999999999999999999999999999863 4789999999985 456799
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~ 265 (612)
|+++|++|+++..|+++++.
T Consensus 222 ri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 222 QFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp EEEEEETTEEEEESSHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999999874
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.7e-44 Score=355.64 Aligned_cols=204 Identities=25% Similarity=0.400 Sum_probs=168.0
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++|++++|. .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+
T Consensus 6 ~l~~~~l~~~y~----------------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~ 67 (229)
T 2pze_A 6 EVVMENVTAFWE----------------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKH 67 (229)
T ss_dssp EEEEEEEEECSS----------------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEE
T ss_pred eEEEEEEEEEeC----------------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEE
Confidence 689999998772 1246799999999999999999999999999999999999987 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASS-------RIGGG 170 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~ 170 (612)
+| .++|++|++.+++. ||+||+.++.. . .. .++++.++.+++.+..+. .+ +
T Consensus 68 ~g----------~i~~v~q~~~~~~~-tv~enl~~~~~--~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~--~ 125 (229)
T 2pze_A 68 SG----------RISFCSQFSWIMPG-TIKENIIFGVS--Y---DE----YRYRSVIKACQLEEDISKFAEKDNIVL--G 125 (229)
T ss_dssp CS----------CEEEECSSCCCCSB-CHHHHHHTTSC--C---CH----HHHHHHHHHTTCHHHHTTSTTGGGSCB--C
T ss_pred CC----------EEEEEecCCcccCC-CHHHHhhccCC--c---Ch----HHHHHHHHHhCcHHHHHhCcccccccc--c
Confidence 98 38999999999886 99999987421 1 11 123445555666543322 22 1
Q ss_pred CCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 171 SSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTL-LKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 171 ~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
....+||||||||++|||||+.+|++++|||||+|||+.++..+++. ++++. .|+|||++|||++. + +.||++++
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~-~-~~~d~v~~ 201 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILI 201 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHCSEEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHH-H-HhCCEEEE
Confidence 23458999999999999999999999999999999999999999997 45653 37899999999863 5 46999999
Q ss_pred EcCCeEEEecChhhHH
Q 046991 250 LSNGFVVHNGTLNHLE 265 (612)
Q Consensus 250 L~~G~iv~~G~~~~~~ 265 (612)
|++|++++.|+++++.
T Consensus 202 l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 202 LHEGSSYFYGTFSELQ 217 (229)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=355.91 Aligned_cols=210 Identities=21% Similarity=0.407 Sum_probs=164.5
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
+|+++|++++|. .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+
T Consensus 3 ~l~~~~l~~~y~----------------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~ 64 (237)
T 2cbz_A 3 SITVRNATFTWA----------------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAI 64 (237)
T ss_dssp CEEEEEEEEESC----------------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE--EEEEEEE
T ss_pred eEEEEEEEEEeC----------------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEE
Confidence 589999998872 0146799999999999999999999999999999999999976 7999999
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCcc
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGI 176 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~L 176 (612)
+| .++||+|++.+ +.+||+||+.++... .. ...+...+..++.+.+++.+. .++.+ +..+.+|
T Consensus 65 ~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L 128 (237)
T 2cbz_A 65 KG----------SVAYVPQQAWI-QNDSLRENILFGCQL--EE-PYYRSVIQACALLPDLEILPSGDRTEI--GEKGVNL 128 (237)
T ss_dssp CS----------CEEEECSSCCC-CSEEHHHHHHTTSCC--CT-THHHHHHHHTTCHHHHTTSTTGGGSEE--STTSBCC
T ss_pred CC----------EEEEEcCCCcC-CCcCHHHHhhCcccc--CH-HHHHHHHHHHhhHHHHHhccccccccc--cCCCCCC
Confidence 98 38999999865 578999999875321 11 111111111112233333211 11122 1223489
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLK---SMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~---~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+ +++ .|+|||++||+++. + +.||++++|++|
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~-~-~~~d~v~~l~~G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY-L-PQVDVIIVMSGG 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT-G-GGSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH-H-HhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999995 442 48899999999974 4 579999999999
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
+++..|+++++.
T Consensus 205 ~i~~~g~~~~~~ 216 (237)
T 2cbz_A 205 KISEMGSYQELL 216 (237)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.6e-43 Score=396.72 Aligned_cols=217 Identities=24% Similarity=0.384 Sum_probs=185.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.++++|++++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|+++| .+|+|.
T Consensus 340 ~~i~~~~v~~~y~~----------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~ 401 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG----------------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSIC 401 (582)
T ss_pred CeEEEEEEEEEcCC----------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEE
Confidence 46999999999830 125799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc-------cc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS-------SR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ 166 (612)
+||+++. ...+|+.++||+|++.+++. ||+||+.++.. +.. .+++++++++.+|+.+..+ +.
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~ 473 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---GEY----TREQIEQAARQAHAMEFIENMPQGLDTV 473 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---CCC----CHHHHHHHHHHCCCHHHHHhCcccccch
Confidence 9999874 35678899999999999985 99999987531 111 1355788888888876544 44
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +...+||||||||++|||||+.+|++++|||||++||+.++..+.+.|+++. + |+|+|+++|+++. + +.||+
T Consensus 474 ~~--~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~ 547 (582)
T 3b5x_A 474 IG--ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLST-I-EQADE 547 (582)
T ss_pred hc--CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCE
Confidence 43 3446899999999999999999999999999999999999999999999985 3 8999999999973 4 57999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
+++|++|++++.|+++++.
T Consensus 548 i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998864
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.6e-43 Score=396.78 Aligned_cols=218 Identities=23% Similarity=0.371 Sum_probs=186.0
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.++++|++++|+ .+++++|+|+|+++++||++||+||||||||||+|+|+|+++| .+|+|.
T Consensus 340 ~~i~~~~v~~~y~----------------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~ 401 (582)
T 3b60_A 340 GDLEFRNVTFTYP----------------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHIL 401 (582)
T ss_dssp CCEEEEEEEECSS----------------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEE
T ss_pred CcEEEEEEEEEcC----------------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEE
Confidence 4699999999872 0126799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc-------ccc
Q 046991 97 VNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA-------SSR 166 (612)
Q Consensus 97 ~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ 166 (612)
+||+++.. ..+|+.++||+|++.+++. ||+||+.++.. +..+ +++++++++.+++.+.. ++.
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~ 473 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---EEYS----REQIEEAARMAYAMDFINKMDNGLDTI 473 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSB
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---CCCC----HHHHHHHHHHcCCHHHHHhcccccccc
Confidence 99998753 4577889999999999985 99999987531 1112 24577888888886543 455
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +...+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. + |+|+|+++|+++. + +.||+
T Consensus 474 ~~--~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~ 547 (582)
T 3b60_A 474 IG--ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLST-I-EQADE 547 (582)
T ss_dssp CC--TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGG-T-TTCSE
T ss_pred cc--CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHH-H-HhCCE
Confidence 53 3456899999999999999999999999999999999999999999999985 3 8999999999974 4 57999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
+++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999988754
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.1e-43 Score=395.83 Aligned_cols=218 Identities=27% Similarity=0.449 Sum_probs=184.1
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...++++|++++|+ .+++++|+|+|+++++||++||+||||||||||+|+|+|+++| .+|+|
T Consensus 337 ~~~i~~~~v~~~y~----------------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i 398 (578)
T 4a82_A 337 QGRIDIDHVSFQYN----------------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQI 398 (578)
T ss_dssp SCCEEEEEEEECSC----------------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEE
T ss_pred CCeEEEEEEEEEcC----------------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEE
Confidence 34699999999883 1346799999999999999999999999999999999999987 79999
Q ss_pred EECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 046991 96 LVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASS 165 (612)
Q Consensus 96 ~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~ 165 (612)
.+||+++. .+.+|+.+|||+|++.+++. ||+||+.++. +..++ +++.+.++..++.+ -.++
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t 469 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PTATD----EEVVEAAKMANAHDFIMNLPQGYDT 469 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred EECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCcHHHHHhCcchhhh
Confidence 99999874 35678899999999999987 9999998752 11122 34566667666644 3455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+| +...+||||||||++|||||+.+|++++|||||||||+.++..+.+.++++. .++|+|+++|+++. + +.||
T Consensus 470 ~~~--~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d 543 (578)
T 4a82_A 470 EVG--ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLST-I-THAD 543 (578)
T ss_dssp BCC--GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGG-T-TTCS
T ss_pred hhc--cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCC
Confidence 553 3345899999999999999999999999999999999999999999999984 36899999999984 5 5699
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~~ 266 (612)
++++|++|++++.|+++++.+
T Consensus 544 ~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 544 KIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998753
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.5e-43 Score=395.61 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=184.0
Q ss_pred EEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 19 LETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
|+++|++++|+. ..++++|+|+|+++++||++||+||||||||||+|+|+|+++| .+|+|.+|
T Consensus 342 i~~~~v~~~y~~---------------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~ 404 (595)
T 2yl4_A 342 LEFKNVHFAYPA---------------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLD 404 (595)
T ss_dssp EEEEEEEEECSS---------------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEEEEEEeCC---------------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEEC
Confidence 999999999831 1135699999999999999999999999999999999999987 79999999
Q ss_pred CeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 046991 99 DRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-------ASSRIG 168 (612)
Q Consensus 99 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 168 (612)
|+++.. ..+++.++||+|++.+++. ||+||+.++.... . +..+++++++++.+|+.+. .|+.+|
T Consensus 405 g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-~----~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~ 478 (595)
T 2yl4_A 405 GHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP-S----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478 (595)
T ss_dssp TEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST-T----TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCS
T ss_pred CEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc-c----ccCHHHHHHHHHHcCCHHHHHhCccccccccc
Confidence 998753 4567889999999999875 9999998753210 0 1123567888888888654 456664
Q ss_pred CCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEE
Q 046991 169 GGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 169 ~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~ 248 (612)
+.+.+||||||||++|||||+++|++++|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||+++
T Consensus 479 --~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~-~-~~~d~i~ 552 (595)
T 2yl4_A 479 --EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLST-I-KNANMVA 552 (595)
T ss_dssp --SSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHH-H-HHSSEEE
T ss_pred --CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHH-H-HcCCEEE
Confidence 33468999999999999999999999999999999999999999999999863 7899999999873 5 5699999
Q ss_pred EEcCCeEEEecChhhHH
Q 046991 249 LLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 249 lL~~G~iv~~G~~~~~~ 265 (612)
+|++|++++.|+++++.
T Consensus 553 ~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 553 VLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEETTEEEEEECSCC--
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999998864
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-43 Score=393.74 Aligned_cols=218 Identities=24% Similarity=0.388 Sum_probs=182.6
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...++++|++++|+ .+++++|+|+|+++++||++||+||||||||||+|+|+|+++| .+|+|
T Consensus 339 ~~~i~~~~v~~~y~----------------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i 400 (587)
T 3qf4_A 339 EGSVSFENVEFRYF----------------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRV 400 (587)
T ss_dssp CCCEEEEEEEECSS----------------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEE
T ss_pred CCcEEEEEEEEEcC----------------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEE
Confidence 34699999999883 1346799999999999999999999999999999999999987 79999
Q ss_pred EECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 046991 96 LVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-------VASS 165 (612)
Q Consensus 96 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~ 165 (612)
.+||+++.. +.+|++++||+|++.+++. ||+||+.++. +..++ +++.+.++..++.+ -.++
T Consensus 401 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 401 EVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----EDATD----DEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp EESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred EECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----CCCCH----HHHHHHHHHhCcHHHHHhcccchhh
Confidence 999998743 5678899999999999976 9999998642 11122 23344455555433 3455
Q ss_pred cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 166 RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 166 ~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.++ +.+.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .|+|+|+++|+++. + +.||
T Consensus 472 ~~~--~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~-~-~~~d 545 (587)
T 3qf4_A 472 RVE--RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPT-A-LLAD 545 (587)
T ss_dssp EEC--SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHH-H-TTSS
T ss_pred Hhc--CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHH-H-HhCC
Confidence 553 3455899999999999999999999999999999999999999999999974 48999999999973 4 6899
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 046991 246 RLVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~~~ 266 (612)
++++|++|++++.|+++++.+
T Consensus 546 ~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 546 KILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998754
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-42 Score=393.69 Aligned_cols=216 Identities=26% Similarity=0.434 Sum_probs=181.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++|++++|+ +++++|+|+|+++++||++||+||||||||||+|+|+|+++| .+|+|.
T Consensus 353 ~~i~~~~v~~~y~-----------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~ 413 (598)
T 3qf4_B 353 GEIEFKNVWFSYD-----------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQIL 413 (598)
T ss_dssp CCEEEEEEECCSS-----------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEE
T ss_pred CeEEEEEEEEECC-----------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEE
Confidence 4699999998872 345699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc-------ccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA-------SSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ 166 (612)
+||+++. .+.+|+.++||+|++.+++. ||+||+.++. +..++ +++.++++..++.+.. ++.
T Consensus 414 ~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~ 484 (598)
T 3qf4_B 414 VDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETV 484 (598)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSS----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCB
T ss_pred ECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCCHHHHHhccccccch
Confidence 9999874 35678899999999999875 9999998642 11111 3355666666665443 344
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +...+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .|+|+|+++|+++. + +.||+
T Consensus 485 ~~--~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~ 558 (598)
T 3qf4_B 485 LT--DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNT-I-KNADL 558 (598)
T ss_dssp CH--HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTH-H-HHCSE
T ss_pred hc--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCE
Confidence 43 2224899999999999999999999999999999999999999999999985 38999999999984 5 45999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
+++|++|++++.|+++++.+
T Consensus 559 i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 559 IIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEECSSSEEECSCHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.1e-41 Score=347.21 Aligned_cols=188 Identities=26% Similarity=0.447 Sum_probs=155.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
+.+|+|+||++++||+++|+||||||||||+|+|+|+++| .+|+|.++| .++||+|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE--EEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 4699999999999999999999999999999999999976 799999998 38999999998885 9999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASS-------RIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
|+. +. .. .. .++++.++.+++.+..+. .+ +....+||||||||++|||||+.+|++|+|||
T Consensus 118 nl~-~~--~~---~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--SY---DE----YRYRSVIKACQLEEDISKFAEKDNIVL--GEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--CC---CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC------CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--cc---ch----HHHHHHHHHhChHHHHHhccccccchh--cCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 11 11 123445566666543322 22 12235899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHH
Q 046991 202 PTSGLDSASALHVVTLL-KSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L-~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 265 (612)
||+|||+.++..+++.+ ++++ .|+|||++||+++. + ..||++++|++|+++..|+++++.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHH-H-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999974 5553 37899999999863 5 569999999999999999998864
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-41 Score=411.49 Aligned_cols=220 Identities=26% Similarity=0.446 Sum_probs=190.0
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++||+++|+. ..+.++|+|||++|+|||.+||+||||||||||+++|.|+++| .+|+|.
T Consensus 1075 g~I~f~nVsf~Y~~---------------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~ 1137 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE---------------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIF 1137 (1321)
T ss_dssp CCEEEEEEEECCTT---------------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEE
T ss_pred CeEEEEEEEEeCCC---------------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEE
Confidence 46999999999942 2345799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-------HVASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ 166 (612)
+||.+++ .+.+|++++|||||+.+|+. |++|||.|+.. +. +..++++.++++..++. +-.||.
T Consensus 1138 iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~---~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~ 1210 (1321)
T 4f4c_A 1138 IDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PS---SVTMAQVEEAARLANIHNFIAELPEGFETR 1210 (1321)
T ss_dssp ETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TT---TSCHHHHHHHHHHTTCHHHHHTSTTTTCSE
T ss_pred ECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CC---CCCHHHHHHHHHHhCChHHHHcCcCCCCCE
Confidence 9999975 36789999999999999987 99999976521 11 12234577778877774 346788
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. .|+|+|+++|.++. ...||+
T Consensus 1211 vge--~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT--i~~aD~ 1284 (1321)
T 4f4c_A 1211 VGD--RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT--VMNADC 1284 (1321)
T ss_dssp ETT--TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSST--TTTCSE
T ss_pred ecC--CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH--HHhCCE
Confidence 863 345899999999999999999999999999999999999999999999864 48999999999973 578999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++|++|+++++|+++++.+
T Consensus 1285 I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1285 IAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESSSSEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.3e-40 Score=403.58 Aligned_cols=217 Identities=26% Similarity=0.396 Sum_probs=188.6
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++|++|+|+. ..++++|+|+|+++++||.+||+||||||||||+++|.|+++| .+|+|.
T Consensus 414 g~I~~~nvsF~Y~~---------------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~ 476 (1321)
T 4f4c_A 414 GDITVENVHFTYPS---------------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKIT 476 (1321)
T ss_dssp CCEEEEEEEECCSS---------------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEE
T ss_pred CcEEEEEeeeeCCC---------------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCccc
Confidence 36999999999842 2457899999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-------HVASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ 166 (612)
+||+++. .+.+|+++|||+|++.+|+. |++||+.|+. +..+ ++++.++++..++. +-.+|.
T Consensus 477 idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~ 547 (1321)
T 4f4c_A 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGK----EGIT----REEMVAACKMANAEKFIKTLPNGYNTL 547 (1321)
T ss_dssp ETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSE
T ss_pred CCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhc----ccch----HHHHHHHHHHccchhHHHcCCCCCccE
Confidence 9999875 36788999999999999987 9999998762 1112 34566777776654 446788
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+|+ ....||||||||++||||++++|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ ..+.||+
T Consensus 548 vGe--~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~ 621 (1321)
T 4f4c_A 548 VGD--RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADL 621 (1321)
T ss_dssp ESS--SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSE
T ss_pred ecC--CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCE
Confidence 863 345899999999999999999999999999999999999999999999985 4899999999997 4688999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 046991 247 LVLLSNGFVVHNGTLNHLE 265 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~ 265 (612)
|++|++|++++.|+.+|+.
T Consensus 622 Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 622 IISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEeeCCeeeccCCHHHHH
Confidence 9999999999999999875
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.5e-39 Score=391.26 Aligned_cols=218 Identities=26% Similarity=0.434 Sum_probs=182.5
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.|+++|++++|+. ..++++|+|+|+++++||++||+||||||||||+++|+|+++| .+|+|.
T Consensus 386 g~i~~~~v~~~y~~---------------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~ 448 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPS---------------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVS 448 (1284)
T ss_dssp CCEEEEEEEECCSS---------------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEE
T ss_pred CeEEEEEEEEEcCC---------------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEE
Confidence 36999999998831 1235799999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------ccccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGL-------DHVASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ 166 (612)
+||+++. .+.+|+.+|||+|++.+++. ||+||+.++.. ..+.+ ++.+.++..++ .+..++.
T Consensus 449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~ 519 (1284)
T 3g5u_A 449 IDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE----DVTMD----EIEKAVKEANAYDFIMKLPHQFDTL 519 (1284)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS----SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCC
T ss_pred ECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC----CCCHH----HHHHHHHHhCcHHHHHhcccccccc
Confidence 9999874 35678899999999999987 99999998731 11222 23344444443 3345677
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +.+.+||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .|+|+|+++|+++. + +.||+
T Consensus 520 ~~--~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-i-~~~d~ 593 (1284)
T 3g5u_A 520 VG--ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLST-V-RNADV 593 (1284)
T ss_dssp CS--SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHH-H-TTCSE
T ss_pred cc--CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCE
Confidence 75 3445899999999999999999999999999999999999999999998874 48999999999973 5 55999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++|++|++++.|+.+++.+
T Consensus 594 i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 594 IAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp EEECSSSCCCCEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.7e-39 Score=388.35 Aligned_cols=220 Identities=25% Similarity=0.428 Sum_probs=182.3
Q ss_pred ceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE
Q 046991 17 CRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL 96 (612)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~ 96 (612)
-.++++|++++|+. ..++++|+|+|+++++||++||+||||||||||+++|+|+.+| .+|+|.
T Consensus 1029 g~i~~~~v~~~y~~---------------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~ 1091 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT---------------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVF 1091 (1284)
T ss_dssp CCEEEEEEEBCCSC---------------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEE
T ss_pred CcEEEEEEEEECCC---------------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEE
Confidence 46999999998841 1234699999999999999999999999999999999999987 799999
Q ss_pred ECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 046991 97 VNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-------HVASSR 166 (612)
Q Consensus 97 ~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ 166 (612)
+||++++ .+.+|+.++||||++.+++ .||+||+.++...+ ..+.+ ++.+.++..++. +..||.
T Consensus 1092 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~--~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~ 1164 (1284)
T 3g5u_A 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR--VVSYE----EIVRAAKEANIHQFIDSLPDKYNTR 1164 (1284)
T ss_dssp SSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC--CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCB
T ss_pred ECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC--CCCHH----HHHHHHHHhCcHHHHHhCccccccc
Confidence 9999875 3567889999999998886 59999998642111 11222 334445554443 445677
Q ss_pred ccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 167 IGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 167 vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
+| +....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++.. .|+|+|+++|+++. + +.|||
T Consensus 1165 vg--e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~-i-~~~dr 1238 (1284)
T 3g5u_A 1165 VG--DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLST-I-QNADL 1238 (1284)
T ss_dssp CS--TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTG-G-GSCSE
T ss_pred cC--CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHH-H-HcCCE
Confidence 75 3445899999999999999999999999999999999999999999998853 48999999999984 5 56999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 046991 247 LVLLSNGFVVHNGTLNHLEE 266 (612)
Q Consensus 247 v~lL~~G~iv~~G~~~~~~~ 266 (612)
|++|++|++++.|+++++.+
T Consensus 1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEETBEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-38 Score=357.05 Aligned_cols=208 Identities=27% Similarity=0.306 Sum_probs=180.6
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+| .+|+
T Consensus 354 ~~~~l~~~~l~~~~------------------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~ 412 (607)
T 3bk7_A 354 RETLVEYPRLVKDY------------------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGK 412 (607)
T ss_dssp CCEEEEECCEEEEC------------------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSC
T ss_pred CceEEEEeceEEEe------------------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceE
Confidence 34679999998776 22 368999999999999999999999999999999999977 6899
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|.+ .+.++|++|+....+.+||.|++...... .....++++++++.+|+.+..++.++
T Consensus 413 I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~------ 470 (607)
T 3bk7_A 413 VEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSS------KLNSNFYKTELLKPLGIIDLYDRNVE------ 470 (607)
T ss_dssp CCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH------HHHCHHHHHHTHHHHTCTTTTTSBGG------
T ss_pred EEE----------eeEEEEEecCccCCCCCcHHHHHHhhhcc------CCCHHHHHHHHHHHcCCchHhcCChh------
Confidence 875 24699999998887889999988754110 11123568899999999988899887
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC--
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN-- 252 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~-- 252 (612)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+..+|||+++|++
T Consensus 471 ~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~ 549 (607)
T 3bk7_A 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEP 549 (607)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCc
Confidence 899999999999999999999999999999999999999999999998667899999999998 48899999999986
Q ss_pred CeEEEecChhhHHH
Q 046991 253 GFVVHNGTLNHLEE 266 (612)
Q Consensus 253 G~iv~~G~~~~~~~ 266 (612)
|+++..|+++++..
T Consensus 550 g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 550 GRHGRALPPMGMRE 563 (607)
T ss_dssp TTEEEECCCEEHHH
T ss_pred ceEEecCCHHHHHh
Confidence 88888999988754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.4e-38 Score=351.93 Aligned_cols=207 Identities=27% Similarity=0.300 Sum_probs=179.2
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...++++|+++.+ ++ ..|+++|+++++||++||+||||||||||+|+|+|+.+| .+|+|
T Consensus 285 ~~~l~~~~l~~~~------------------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i 343 (538)
T 1yqt_A 285 ETLVTYPRLVKDY------------------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKI 343 (538)
T ss_dssp CEEEEECCEEEEE------------------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCC
T ss_pred CeEEEEeeEEEEE------------------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEE
Confidence 4679999999877 22 368999999999999999999999999999999999977 68998
Q ss_pred EECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCG 175 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~ 175 (612)
.+ ...++||+|+....+.+||.|++....... ....++++++++.+|+.+..++.++ .
T Consensus 344 ~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~------~ 401 (538)
T 1yqt_A 344 EW----------DLTVAYKPQYIKADYEGTVYELLSKIDASK------LNSNFYKTELLKPLGIIDLYDREVN------E 401 (538)
T ss_dssp CC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH------HTCHHHHHHTTTTTTCGGGTTSBGG------G
T ss_pred EE----------CceEEEEecCCcCCCCCcHHHHHHhhhccC------CCHHHHHHHHHHHcCChhhhcCChh------h
Confidence 75 235999999988778899999886531111 0113567889999999988888887 8
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC--C
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN--G 253 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~--G 253 (612)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++..+|||+++|++ |
T Consensus 402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~ 480 (538)
T 1yqt_A 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPG 480 (538)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999997656889999999998 58899999999986 8
Q ss_pred eEEEecChhhHHH
Q 046991 254 FVVHNGTLNHLEE 266 (612)
Q Consensus 254 ~iv~~G~~~~~~~ 266 (612)
+++..|+++++..
T Consensus 481 ~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 481 KYGRALPPMGMRE 493 (538)
T ss_dssp TEEEECCCEEHHH
T ss_pred eEeecCCHHHHHh
Confidence 8889999988754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-37 Score=344.64 Aligned_cols=208 Identities=24% Similarity=0.282 Sum_probs=177.0
Q ss_pred CcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeE
Q 046991 15 ALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGK 94 (612)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~ 94 (612)
....++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+| .+|+
T Consensus 266 ~~~~l~~~~l~~~~------------------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~ 324 (538)
T 3ozx_A 266 LKTKMKWTKIIKKL------------------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGS 324 (538)
T ss_dssp CCEEEEECCEEEEE------------------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCC
T ss_pred ccceEEEcceEEEE------------------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcE
Confidence 34578889998777 22 357888999999999999999999999999999999987 7999
Q ss_pred EEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046991 95 LLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNC 174 (612)
Q Consensus 95 I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 174 (612)
|.+++ +.++|++|+......+||+||+.+...... . .....++++++.+||.+..++.++
T Consensus 325 i~~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~------ 384 (538)
T 3ozx_A 325 VTPEK---------QILSYKPQRIFPNYDGTVQQYLENASKDAL---S--TSSWFFEEVTKRLNLHRLLESNVN------ 384 (538)
T ss_dssp EESSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT---C--TTSHHHHHTTTTTTGGGCTTSBGG------
T ss_pred EEECC---------eeeEeechhcccccCCCHHHHHHHhhhhcc---c--hhHHHHHHHHHHcCCHHHhcCChh------
Confidence 98764 357999999877778899999987421111 0 112457889999999999999887
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC--
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN-- 252 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~-- 252 (612)
+|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++ ++..+||||++|++
T Consensus 385 ~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~ 463 (538)
T 3ozx_A 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEP 463 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCc
Confidence 899999999999999999999999999999999999999999999998777999999999998 58899999999986
Q ss_pred CeEEEecChhhH
Q 046991 253 GFVVHNGTLNHL 264 (612)
Q Consensus 253 G~iv~~G~~~~~ 264 (612)
|.....+++.++
T Consensus 464 ~~~~~~~~~~~~ 475 (538)
T 3ozx_A 464 EKAGLATSPVTL 475 (538)
T ss_dssp TTEEEECCCEEH
T ss_pred ceeccCCChHHH
Confidence 666677776554
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=339.26 Aligned_cols=193 Identities=24% Similarity=0.296 Sum_probs=165.2
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCC
Q 046991 49 KFILKDVSCEARPG-----EITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPL 123 (612)
Q Consensus 49 ~~iL~~vs~~i~~G-----e~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 123 (612)
+.+++++|+++++| |+++|+||||||||||+++|+|+.+| .+|+. +. +..++|++|+......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCC
Confidence 45789999999999 78999999999999999999999987 57752 21 3468999999776666
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPT 203 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPt 203 (612)
.||+|++... .+... ...+.++++++.+||.+..++.++ +|||||||||+||++|+.+|++|+|||||
T Consensus 428 ~tv~e~~~~~--~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~------~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 428 GTVRQLFFKK--IRGQF----LNPQFQTDVVKPLRIDDIIDQEVQ------HLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp SBHHHHHHHH--CSSTT----TSHHHHHHTHHHHTSTTTSSSBSS------SCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred ccHHHHHHHH--hhccc----ccHHHHHHHHHHcCChhhhcCChh------hCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 7999987542 22111 112457789999999999998887 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC--CeEEEecChhhHHH
Q 046991 204 SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN--GFVVHNGTLNHLEE 266 (612)
Q Consensus 204 sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 266 (612)
+|||+.++..++++|++++++.|+|||++|||++ ++..+|||+++|++ |+++..|+++++..
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999997666899999999998 58899999999986 99999999988754
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.7e-35 Score=339.88 Aligned_cols=204 Identities=20% Similarity=0.309 Sum_probs=171.5
Q ss_pred CCCCcceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCce
Q 046991 12 SRKALCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKV 91 (612)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~ 91 (612)
+.+.+..|...|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|
T Consensus 429 ~~~~~~~L~~~~ls~~y------------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------- 483 (986)
T 2iw3_A 429 EEDEGEDLCNCEFSLAY------------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------- 483 (986)
T ss_dssp SCSSSCEEEEEEEEEEE------------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------
T ss_pred cccccceeEEeeEEEEE------------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------
Confidence 34456678888999888 45679999999999999999999999999999999995
Q ss_pred eeEEEECCeeCChhhhcccEEEEecCC-CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 046991 92 SGKLLVNDRPMDAEHFRRISGYVTQDD-ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIGG 169 (612)
Q Consensus 92 ~G~I~~~g~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 169 (612)
|+| +|.+.. .. ..++|++|+. .+++.+||.|++.+ . ... . +++++++++.+|+. +..+++++
T Consensus 484 -G~i--~g~~~~-~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~~-~----~~~v~~~L~~lgL~~~~~~~~~~- 547 (986)
T 2iw3_A 484 -GQV--DGFPTQ-EE--CRTVYVEHDIDGTHSDTSVLDFVFE--S--GVG-T----KEAIKDKLIEFGFTDEMIAMPIS- 547 (986)
T ss_dssp -TCS--TTCCCT-TT--SCEEETTCCCCCCCTTSBHHHHHHT--T--CSS-C----HHHHHHHHHHTTCCHHHHHSBGG-
T ss_pred -CCc--CCCccc-cc--eeEEEEcccccccccCCcHHHHHHH--h--hcC-H----HHHHHHHHHHcCCChhhhcCCcc-
Confidence 222 344332 11 2378999884 67889999999975 1 111 1 46789999999994 67788887
Q ss_pred CCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 170 GSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 170 ~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|||++|||++ .+.++||++++
T Consensus 548 -----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~-~l~~~adrii~ 617 (986)
T 2iw3_A 548 -----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSV-FLDNVCEYIIN 617 (986)
T ss_dssp -----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHH-HHHHHCSEEEE
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHH-HHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999987 3789999999998 48899999999
Q ss_pred EcCCeEE-EecChhhHHH
Q 046991 250 LSNGFVV-HNGTLNHLEE 266 (612)
Q Consensus 250 L~~G~iv-~~G~~~~~~~ 266 (612)
|++|+++ +.|+.+++.+
T Consensus 618 L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 618 YEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EETTEEEEEESCHHHHHH
T ss_pred EECCeeecCCCCHHHHHh
Confidence 9999997 6899987654
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-36 Score=336.65 Aligned_cols=182 Identities=24% Similarity=0.356 Sum_probs=153.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE---------EECCeeCCh---h--hhcccEEEEe
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL---------LVNDRPMDA---E--HFRRISGYVT 115 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I---------~~~g~~~~~---~--~~~~~i~yv~ 115 (612)
.+|+|+| ++++||+++|+||||||||||+|+|+|+++| .+|++ .++|.++.. . ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 9999999999999999999999999999977 67875 356655421 1 1224588999
Q ss_pred cCCCcCCC---CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh
Q 046991 116 QDDALFPL---LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH 192 (612)
Q Consensus 116 Q~~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~ 192 (612)
|+....+. .|+.|++... +..++++++++.+||.+..++.++ +|||||||||+||+||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~-----------~~~~~~~~~l~~lgl~~~~~~~~~------~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA-----------DETGKLEEVVKALELENVLEREIQ------HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH-----------CSSSCHHHHHHHTTCTTTTTSBGG------GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh-----------hHHHHHHHHHHHcCCChhhhCChh------hCCHHHHHHHHHHHHHhc
Confidence 97544332 3899987531 112457889999999988888887 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++ .+.++||++++|++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~-~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLA-VLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999976 5899999999998 588999999999865
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.7e-36 Score=343.33 Aligned_cols=208 Identities=26% Similarity=0.369 Sum_probs=140.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCc-----eeeEEEECCee
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLL---------------------EILAGKISSRK-----VSGKLLVNDRP 101 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL---------------------~~L~G~~~~~~-----~~G~I~~~g~~ 101 (612)
.+.+|+||||++++||++||+||||||||||+ +++.|+..|.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 88888876621 15677777765
Q ss_pred CChhhhcccEEEEecCC-------------------CcCCCCCHHHHHHHHHHccCCCCCHHHHH------HHHHHHHHH
Q 046991 102 MDAEHFRRISGYVTQDD-------------------ALFPLLTVEETLMCSALLRLTAGRRKQAA------SRVRGLLKE 156 (612)
Q Consensus 102 ~~~~~~~~~i~yv~Q~~-------------------~l~~~lTv~E~l~~~~~l~~~~~~~~~~~------~~v~~~l~~ 156 (612)
... ..++.+++|+|.. ..++.+||+||+.+...+........... ....++++.
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 432 1233344444432 23467899999987533221111010001 112246889
Q ss_pred cCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc
Q 046991 157 LGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPA--VVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTI 233 (612)
Q Consensus 157 lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~ 233 (612)
+||.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|+++++ .|+|||++|
T Consensus 189 ~gL~~~~~~~~~~------~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vt 261 (670)
T 3ux8_A 189 VGLDYLTLSRSAG------TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVE 261 (670)
T ss_dssp TTCTTCCTTCBGG------GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred cCCchhhhcCCcc------cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 999865 578887 899999999999999999998 9999999999999999999999999975 589999999
Q ss_pred cCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 234 HQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 234 H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
||++ ....||++++| ++|++++.|+++++.
T Consensus 262 Hd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 9986 34569999999 899999999998764
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.8e-36 Score=339.07 Aligned_cols=185 Identities=25% Similarity=0.361 Sum_probs=154.2
Q ss_pred Ccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE---------EECCeeCCh---h--hhcccE
Q 046991 47 DPK-FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL---------LVNDRPMDA---E--HFRRIS 111 (612)
Q Consensus 47 ~~~-~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I---------~~~g~~~~~---~--~~~~~i 111 (612)
+++ .+|+|+| ++++||+++|+||||||||||||+|+|+++| .+|++ .++|.++.. . ..+..+
T Consensus 102 g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i 178 (607)
T 3bk7_A 102 GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178 (607)
T ss_dssp STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhhhhhhcce
Confidence 444 4899999 9999999999999999999999999999977 67875 456655421 1 123457
Q ss_pred EEEecCCCcCC---CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHH
Q 046991 112 GYVTQDDALFP---LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGV 188 (612)
Q Consensus 112 ~yv~Q~~~l~~---~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~ 188 (612)
++++|.....+ ..||+|++... +..++++++++.+||++..++.++ +|||||||||+||+
T Consensus 179 ~~~~q~~~~~~~~~~~tv~e~l~~~-----------~~~~~~~~~L~~lgL~~~~~~~~~------~LSGGekQRvaIAr 241 (607)
T 3bk7_A 179 VVKPQYVDLLPKAVKGKVRELLKKV-----------DEVGKFEEVVKELELENVLDRELH------QLSGGELQRVAIAA 241 (607)
T ss_dssp EEECSCGGGGGGTCCSBHHHHHHHT-----------CCSSCHHHHHHHTTCTTGGGSBGG------GCCHHHHHHHHHHH
T ss_pred EEeechhhhchhhccccHHHHhhhh-----------HHHHHHHHHHHHcCCCchhCCChh------hCCHHHHHHHHHHH
Confidence 89998743322 13999998631 012457889999999999999887 89999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 189 DLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 189 ~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+..++|++++|+++
T Consensus 242 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999976 4899999999997 488899999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.1e-35 Score=339.69 Aligned_cols=208 Identities=23% Similarity=0.351 Sum_probs=163.2
Q ss_pred cceEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE
Q 046991 16 LCRLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL 95 (612)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I 95 (612)
...|+++|++++|+ ..++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|
T Consensus 669 ~~mL~v~nLs~~Y~----------------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I 730 (986)
T 2iw3_A 669 KAIVKVTNMEFQYP----------------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEV 730 (986)
T ss_dssp SEEEEEEEEEECCT----------------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEE
T ss_pred CceEEEEeeEEEeC----------------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEE
Confidence 45799999998772 1235799999999999999999999999999999999999987 79999
Q ss_pred EECCeeCChhhhcccEEEEecCCCc----CCCCCHHHHHHHHHHcc------------C---------------------
Q 046991 96 LVNDRPMDAEHFRRISGYVTQDDAL----FPLLTVEETLMCSALLR------------L--------------------- 138 (612)
Q Consensus 96 ~~~g~~~~~~~~~~~i~yv~Q~~~l----~~~lTv~E~l~~~~~l~------------~--------------------- 138 (612)
.++|. ..++|++|++.. ....|++|++.+..... .
T Consensus 731 ~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~ 802 (986)
T 2iw3_A 731 YTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRI 802 (986)
T ss_dssp EECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEE
T ss_pred EEcCc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhh
Confidence 99863 137888886521 12356777665421000 0
Q ss_pred --------------------------------CCC--------C--------------------------HHHHHHHHHH
Q 046991 139 --------------------------------TAG--------R--------------------------RKQAASRVRG 152 (612)
Q Consensus 139 --------------------------------~~~--------~--------------------------~~~~~~~v~~ 152 (612)
+.. + +....+++++
T Consensus 803 ~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~ 882 (986)
T 2iw3_A 803 AGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEE 882 (986)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 000 0 0011356889
Q ss_pred HHHHcCCcc-c-ccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 046991 153 LLKELGLDH-V-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTII 230 (612)
Q Consensus 153 ~l~~lgL~~-~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii 230 (612)
+++.+||.+ . .+++++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 883 ~Le~lGL~~~~~~~~~~~------~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVI 952 (986)
T 2iw3_A 883 HCSMLGLDPEIVSHSRIR------GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVI 952 (986)
T ss_dssp HHHHTTCCHHHHHHSCGG------GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEE
T ss_pred HHHHcCCCchhhcCCCcc------ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEE
Confidence 999999975 3 577776 89999999999999999999999999999999999999999988754 56999
Q ss_pred EEccCCchHHHhccCeEEEEcCCeEEEecC
Q 046991 231 LTIHQPGFRILELFDRLVLLSNGFVVHNGT 260 (612)
Q Consensus 231 ~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 260 (612)
++|||++ .+.++||++++|++|+++..|+
T Consensus 953 iISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 953 IITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred EEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 9999997 4888999999999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.2e-33 Score=321.80 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=151.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCceeeEEEECCeeCChhh
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILA----------------------GKISSRKVSGKLLVNDRPMDAEH 106 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~----------------------G~~~~~~~~G~I~~~g~~~~~~~ 106 (612)
+.+|+|||++|++||++||+||||||||||+++|. |+.. ..|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~---~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH---LDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG---CSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc---cCceeEeccccCCCCC
Confidence 45899999999999999999999999999998764 2222 3568888887753100
Q ss_pred -----------------h---------------------------cccEEEEecCCCcCC--------------------
Q 046991 107 -----------------F---------------------------RRISGYVTQDDALFP-------------------- 122 (612)
Q Consensus 107 -----------------~---------------------------~~~i~yv~Q~~~l~~-------------------- 122 (612)
+ .+..|++.|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 011244444433322
Q ss_pred ------------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHH
Q 046991 123 ------------LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVD 189 (612)
Q Consensus 123 ------------~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~ 189 (612)
.+||+||+.+.... . ..+++.+.++.+|+.. ..++.++ +|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~------~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI------P--KIKRKLETLYDVGLGYMKLGQPAT------TLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC------H--HHHHHHHHHHHTTCTTSBTTCCGG------GCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh------h--hHHHHHHHHHHcCCchhhccCCch------hCCHHHHHHHHHHHH
Confidence 47999999875321 1 2345678889999974 3566665 899999999999999
Q ss_pred HhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecC
Q 046991 190 LVHDP---AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGT 260 (612)
Q Consensus 190 L~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~ 260 (612)
|+.+| ++|||||||+|||+.++..++++|+++++ .|+|||++|||++. + +.||++++| ++|++++.|+
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~-~-~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEecC
Confidence 99887 59999999999999999999999999975 48999999999973 4 679999999 8999999999
Q ss_pred hhhHH
Q 046991 261 LNHLE 265 (612)
Q Consensus 261 ~~~~~ 265 (612)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-33 Score=313.10 Aligned_cols=188 Identities=27% Similarity=0.388 Sum_probs=145.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE-----------EECCeeCCh---hhhccc--EEE
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL-----------LVNDRPMDA---EHFRRI--SGY 113 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I-----------~~~g~~~~~---~~~~~~--i~y 113 (612)
..|++++ .+++||++||+||||||||||||+|+|+++| .+|+| .+.|.++.. ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 4677777 6899999999999999999999999999987 68887 233332211 111111 223
Q ss_pred EecCCCc------CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHH
Q 046991 114 VTQDDAL------FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIG 187 (612)
Q Consensus 114 v~Q~~~l------~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia 187 (612)
.+|.... -+..++.+++... . ++..++++++++.+||.+..++.++ +|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~----~-----~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLR----M-----EKSPEDVKRYIKILQLENVLKRDIE------KLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHH----C-----CSCHHHHHHHHHHHTCTGGGGSCTT------TCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhh----h-----hhHHHHHHHHHHHcCCcchhCCChH------HCCHHHHHHHHHH
Confidence 3443211 1223566655421 0 0123568899999999999999887 8999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEE
Q 046991 188 VDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 188 ~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++..++|++++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999975 5889999999998 5899999999998876443
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.5e-33 Score=310.91 Aligned_cols=175 Identities=21% Similarity=0.270 Sum_probs=141.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE-----------EECCeeCCh---hhh--cccEEEEecCC---
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL-----------LVNDRPMDA---EHF--RRISGYVTQDD--- 118 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I-----------~~~g~~~~~---~~~--~~~i~yv~Q~~--- 118 (612)
..++||++||+||||||||||+|+|+|+++| .+|+| .++|+++.. ... ...+..+.|..
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 3569999999999999999999999999987 68988 567766521 111 12344444443
Q ss_pred -CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEE
Q 046991 119 -ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVV 197 (612)
Q Consensus 119 -~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ll 197 (612)
.++. .||+|++... +..++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKI-----------DERGKKDEVKELLNMTNLWNKDAN------ILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHH-----------CCSSCHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcc-----------hhHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHcCCCEE
Confidence 2333 3888866421 112357789999999999999987 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 198 LIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 198 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
+|||||++||+.++..+.+.|++++ + |+|||+++||++ ++..+||++++|++|..
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 9999999999999999999999995 4 899999999998 58999999999987543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=9.9e-31 Score=302.30 Aligned_cols=198 Identities=27% Similarity=0.431 Sum_probs=151.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C----------------Cceee-------EEEECC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEI-LAGKIS-------S----------------RKVSG-------KLLVND 99 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~-L~G~~~-------~----------------~~~~G-------~I~~~g 99 (612)
.|+|||++|++||++||+|+||||||||++. |+|.+. + .+.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 5999999999999999999999999999996 775431 1 12467 789998
Q ss_pred eeCChh-------------hhcc---------c----------------------EEEEecCCCcCC-------------
Q 046991 100 RPMDAE-------------HFRR---------I----------------------SGYVTQDDALFP------------- 122 (612)
Q Consensus 100 ~~~~~~-------------~~~~---------~----------------------i~yv~Q~~~l~~------------- 122 (612)
.++... ..|+ . .|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 876310 1111 1 122221212222
Q ss_pred -------------------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHH
Q 046991 123 -------------------LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERR 182 (612)
Q Consensus 123 -------------------~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerq 182 (612)
.+|+.|++.|.. . .. ..+++.++++.+||... .++.+. .|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~-----~-~~--~~~~~~~~L~~~gL~~~~l~~~~~------~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA-----D-ES--AIFRALDTLREVGLGYLRLGQPAT------ELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT-----T-SH--HHHHHHHHHHHTTCTTSBTTCCGG------GCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh-----c-ch--HHHHHHHHHHHcCCCcccccCCcc------cCCHHHHH
Confidence 235555554421 1 11 23578899999999873 567765 89999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCC
Q 046991 183 RASIGVDLVHD---PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNG 253 (612)
Q Consensus 183 Rv~ia~~L~~~---p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G 253 (612)
||+||++|+.+ |++|||||||+|||+.+...++++|+++++ .|.|||+++||++ ++ +.||++++| ++|
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G 814 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGG 814 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCC
Confidence 99999999996 799999999999999999999999999975 5899999999997 36 889999999 799
Q ss_pred eEEEecChhhHH
Q 046991 254 FVVHNGTLNHLE 265 (612)
Q Consensus 254 ~iv~~G~~~~~~ 265 (612)
++++.|+++++.
T Consensus 815 ~Iv~~g~~~el~ 826 (842)
T 2vf7_A 815 RLVAQGTPAEVA 826 (842)
T ss_dssp SEEEEECHHHHT
T ss_pred EEEEEcCHHHHH
Confidence 999999998763
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=9.7e-31 Score=302.72 Aligned_cols=198 Identities=26% Similarity=0.415 Sum_probs=154.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCC---ceee------EEEECCeeCCh--h----
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILA-GKI---------SSR---KVSG------KLLVNDRPMDA--E---- 105 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~-G~~---------~~~---~~~G------~I~~~g~~~~~--~---- 105 (612)
.|+|||++|++||++||+|+||||||||+++|. |.+ .++ ...| .|.++|.++.. .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 599999999999999999999999999999853 211 121 1234 58889887631 0
Q ss_pred -------hh---------cccEEEEecCCCcC----------------------C-------------------------
Q 046991 106 -------HF---------RRISGYVTQDDALF----------------------P------------------------- 122 (612)
Q Consensus 106 -------~~---------~~~i~yv~Q~~~l~----------------------~------------------------- 122 (612)
.. .+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 00 13357776643221 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHHhhCC
Q 046991 123 -------LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDLVHDP 194 (612)
Q Consensus 123 -------~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p 194 (612)
.+||.|++.|... .. ..+++.++++.+||.. ..++.++ +|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~--~~~~~~~~L~~~gL~~~~l~~~~~------~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IP--KIKRKLETLYDVGLGYMKLGQPAT------TLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CH--HHHHHHHHHHHTTCSSSBTTCCGG------GCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------ch--hHHHHHHHHHHcCCCcccccCchh------hCCHHHHHHHHHHHHHhcCC
Confidence 4678888876321 11 1234578999999987 5677776 89999999999999999865
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 195 ---AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 195 ---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
++|||||||+|||+.++..+++.|+++++ .|.|||+++||++. + +.||++++| ++|++++.|+++++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999975 58999999999873 4 689999999 789999999998764
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.2e-30 Score=304.04 Aligned_cols=200 Identities=26% Similarity=0.435 Sum_probs=154.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC----cee------eEEEECCeeCChh----
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLL---------EILAGKISSR----KVS------GKLLVNDRPMDAE---- 105 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL---------~~L~G~~~~~----~~~------G~I~~~g~~~~~~---- 105 (612)
...|+|||+++++||+++|+||||||||||+ +.+.|...+. ..+ +.+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3469999999999999999999999999997 4455443221 122 3355555443210
Q ss_pred ---------h-------------------------------hcccEEEEecCCCcCC-----------------------
Q 046991 106 ---------H-------------------------------FRRISGYVTQDDALFP----------------------- 122 (612)
Q Consensus 106 ---------~-------------------------------~~~~i~yv~Q~~~l~~----------------------- 122 (612)
. ..+..|++.|+..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0 0123578888776655
Q ss_pred ---------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhh
Q 046991 123 ---------LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVH 192 (612)
Q Consensus 123 ---------~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~ 192 (612)
.+||.|++.|.... ...+++.++|+.+||... .++.+. +|||||||||+||++|+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~--------~~~~~~~~~L~~vGL~~~~lgq~~~------~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI--------PSIKRTLQVLHDVGLGYVKLGQPAT------TLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC--------HHHHHHHHHHHHTTGGGSBTTCCST------TCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc--------hhHHHHHHHHHHcCCchhhccCCcc------CCCHHHHHHHHHHHHHhh
Confidence 36888888774321 223567889999999753 345544 899999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhh
Q 046991 193 DP---AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNH 263 (612)
Q Consensus 193 ~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 263 (612)
+| ++|||||||+|||+.+...+++.|+++++ .|.|||+++||++. + +.||+|++| ++|++++.|++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~-i-~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDV-I-KNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 75 79999999999999999999999999975 58999999999963 4 569999999 8999999999998
Q ss_pred HH
Q 046991 264 LE 265 (612)
Q Consensus 264 ~~ 265 (612)
+.
T Consensus 900 l~ 901 (916)
T 3pih_A 900 IA 901 (916)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=4.5e-30 Score=298.19 Aligned_cols=199 Identities=24% Similarity=0.436 Sum_probs=151.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC-----CCc---eee------EEEECCeeCCh--h----
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILA-G----KIS-----SRK---VSG------KLLVNDRPMDA--E---- 105 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~-G----~~~-----~~~---~~G------~I~~~g~~~~~--~---- 105 (612)
.|+|||++|++||++||+|+||||||||+++|. | .+. ++. ..| .|.+++.++.. .
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999853 2 221 111 123 36667766521 0
Q ss_pred -------hh---------cccEEEEecCCCc----------------------CC-------------------------
Q 046991 106 -------HF---------RRISGYVTQDDAL----------------------FP------------------------- 122 (612)
Q Consensus 106 -------~~---------~~~i~yv~Q~~~l----------------------~~------------------------- 122 (612)
.. .+..||++|...+ .+
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 00 1234666664321 11
Q ss_pred -------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHHHhhCC
Q 046991 123 -------LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVDLVHDP 194 (612)
Q Consensus 123 -------~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p 194 (612)
.+||.|++.|.... . ..+++.++++.+||.. ..++.++ .|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~------~--~~~~~~~~L~~lgL~~~~l~~~~~------~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI------A--GVHRYLRTLVDVGLGYVRLGQPAP------TLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC------H--HHHHHHHHHHHTTGGGSBTTCCGG------GSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhcc------h--HHHHHHHHHHHcCCCcccccCccc------cCCHHHHHHHHHHHHHHhCC
Confidence 35777877764211 1 1234578999999987 5677776 89999999999999999865
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 195 ---AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 195 ---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
++|||||||+|||+.++..+++.|+++++ .|.|||+++||++. + +.||++++| ++|++++.|+++++.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDV-I-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999975 58999999999873 4 789999999 789999999998865
Q ss_pred H
Q 046991 266 E 266 (612)
Q Consensus 266 ~ 266 (612)
+
T Consensus 960 ~ 960 (993)
T 2ygr_A 960 A 960 (993)
T ss_dssp H
T ss_pred h
Confidence 3
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-32 Score=297.77 Aligned_cols=185 Identities=16% Similarity=0.121 Sum_probs=149.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee-E-EEECCeeCChhhhcccEEEEecCCC---cCCCCCHH
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG-K-LLVNDRPMDAEHFRRISGYVTQDDA---LFPLLTVE 127 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G-~-I~~~g~~~~~~~~~~~i~yv~Q~~~---l~~~lTv~ 127 (612)
.++|+++++||+++|+||||||||||+|+|+|+.++ .+| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 478999999999999999999999999999999966 789 9 999982 2567899999984 45567999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHH--HhhCCCE----EEEeC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVD--LVHDPAV----VLIDE 201 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~--L~~~p~l----llLDE 201 (612)
||+ ++..... .. ...+++.++++.+|+.+..+ +. +|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~-~~---~~~~~~~~ll~~~gl~~~~~--~~------~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTS-GA---TLLHNKQPMVKNFGLERINE--NK------DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBS-SC---CSSCCBCCEECCCCSSSGGG--CH------HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-ccccccc-Cc---chHHHHHHHHHHhCCCcccc--hh------hhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 6432211 10 11234667888899987665 43 899999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc--h---HHHhccCe-----EEEEc-CCeEEEecChhhH
Q 046991 202 -PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG--F---RILELFDR-----LVLLS-NGFVVHNGTLNHL 264 (612)
Q Consensus 202 -PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 264 (612)
||++||+. ...+.++++ +.++|+|+++|+.+ . ++.+++|+ +++|+ +|+++ .|+++++
T Consensus 268 pPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 544444444 34789999999987 2 36689999 99999 99999 9988765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=8.7e-29 Score=267.66 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=148.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------------------------------------Ccee
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS------------------------------------RKVS 92 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~------------------------------------~~~~ 92 (612)
..+++++|+++++| +++|+|||||||||||++|+++... .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 9999999999999999999877642 1247
Q ss_pred eEEEECCeeCCh---hhhc-ccEEEEecCCCcCCCCCHHHHHHHHHHcc-----------------------CCCCC---
Q 046991 93 GKLLVNDRPMDA---EHFR-RISGYVTQDDALFPLLTVEETLMCSALLR-----------------------LTAGR--- 142 (612)
Q Consensus 93 G~I~~~g~~~~~---~~~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-----------------------~~~~~--- 142 (612)
|++++||++++. ..+. ..+++++|++.++.. +..+...|.-... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999999864 2333 348999999876543 5554444321110 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccCC-
Q 046991 143 --------------------------------RKQAASRVRGLLKELGLDHVA----------------SS---RIGGG- 170 (612)
Q Consensus 143 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~~- 170 (612)
.+...+.+++.++.+++.+.. ++ .+..+
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001123455667777764310 00 11100
Q ss_pred ----CCCCc-cChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhc
Q 046991 171 ----SSNCG-ISGGERRRASIGVDLVHDP--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILEL 243 (612)
Q Consensus 171 ----~~~~~-LSgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~ 243 (612)
...+. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |.|||++||+++ +.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~--~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQ--IAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHH--HHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHH--HHhh
Confidence 00112 6999999999999999999 9999999999999999999999999996 3 789999999984 5688
Q ss_pred cCeEEEE----cCCeEEEec
Q 046991 244 FDRLVLL----SNGFVVHNG 259 (612)
Q Consensus 244 ~D~v~lL----~~G~iv~~G 259 (612)
||++++| .+|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=6.4e-26 Score=241.50 Aligned_cols=81 Identities=32% Similarity=0.483 Sum_probs=74.7
Q ss_pred CccChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 174 CGISGGERRRASIGVDLV------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
.+||||||||++||++|+ .+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++ ..+.+|++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 389999999999999999 79999999999999999999999999999975 5899999999986 36789999
Q ss_pred EEEcCCeEEE
Q 046991 248 VLLSNGFVVH 257 (612)
Q Consensus 248 ~lL~~G~iv~ 257 (612)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999864
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=2.7e-29 Score=246.90 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=103.5
Q ss_pred ccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeC--ChhhhcccEEEEecCCCcCC
Q 046991 45 KKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM--DAEHFRRISGYVTQDDALFP 122 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~--~~~~~~~~i~yv~Q~~~l~~ 122 (612)
.++++.+|+|+ ++||+++|+||||||||||+++|+|+ +| .+|+|. +.+. .....++.+||++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~--~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVS--RIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCS--EEEEEECSCCTTCCCCSSCC------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeee--eEEecCCchhhhcceEEecCCH----
Confidence 34567899996 89999999999999999999999999 76 688884 2222 1123567899999976
Q ss_pred CCCHHHHH-HHHH----HccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEE
Q 046991 123 LLTVEETL-MCSA----LLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVV 197 (612)
Q Consensus 123 ~lTv~E~l-~~~~----~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ll 197 (612)
+||+ .+.. .+. .. ...++++++++. | + |||||++||++|+.+|++|
T Consensus 76 ----~enl~~~~~~~~~~~~--~~---~~~~~~~~~l~~-g-----------------l--Gq~qrv~lAraL~~~p~ll 126 (208)
T 3b85_A 76 ----NEKIDPYLRPLHDALR--DM---VEPEVIPKLMEA-G-----------------I--VEVAPLAYMRGRTLNDAFV 126 (208)
T ss_dssp --------CTTTHHHHHHHT--TT---SCTTHHHHHHHT-T-----------------S--EEEEEGGGGTTCCBCSEEE
T ss_pred ----HHHHHHHHHHHHHHHH--Hh---ccHHHHHHHHHh-C-----------------C--chHHHHHHHHHHhcCCCEE
Confidence 4554 2210 111 00 001234455542 2 2 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 198 LIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 198 lLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
||||||+| ++..+.+.|+++ + .|+||| +|||++
T Consensus 127 lLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 127 ILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp EECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred EEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 99999999 899999999988 4 488999 999986
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=9.6e-26 Score=236.23 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=72.5
Q ss_pred CccChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE--
Q 046991 174 CGISGGERRRASIGVDLV----HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL-- 247 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v-- 247 (612)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ .|+|||++||+++ +.+.||++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH--HHhhCceEEE
Confidence 389999999999999997 5789999999999999999999999999984 3789999999974 67899987
Q ss_pred EEEcCCeE-EEecChhh
Q 046991 248 VLLSNGFV-VHNGTLNH 263 (612)
Q Consensus 248 ~lL~~G~i-v~~G~~~~ 263 (612)
++|.+|+. +.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 78888754 44444444
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=8.5e-28 Score=258.47 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=141.9
Q ss_pred ccceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhh
Q 046991 48 PKFILKDVSCEARPGE--------------------ITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHF 107 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge--------------------~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~ 107 (612)
.+.+|++||+++++|| ++||+||||||||||+|+|+|+.++ .+|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT---- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC--------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc----
Confidence 3569999999999999 9999999999999999999999977 7899999997653
Q ss_pred cccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChH--HHHHHH
Q 046991 108 RRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGG--ERRRAS 185 (612)
Q Consensus 108 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgG--erqRv~ 185 (612)
+ .+|++|++ .++.+|+.|++.+.. + +.+++++++.+++.+. +..+ .+||| ||||+.
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~----~-------~~~~~~~L~~~~L~~~-~~~~-------~lS~G~~~kqrv~ 166 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGS----T-------NFPPDTYLEKMKFYEY-DFFI-------IISATRFKKNDID 166 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGG----S-------SCCHHHHHHHTTGGGC-SEEE-------EEESSCCCHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccc----h-------HHHHHHHHHHcCCCcc-CCeE-------EeCCCCccHHHHH
Confidence 1 27899985 577889999875431 0 1347889999998765 3332 38999 999999
Q ss_pred HHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----cC----CcEEEEEccCCch-HHHhccCe
Q 046991 186 IGVDLVH----------DPAVVLIDEPTSGLDSASALHVVTLLKSMVV----NQ----GKTIILTIHQPGF-RILELFDR 246 (612)
Q Consensus 186 ia~~L~~----------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~----~~----g~tii~~~H~~~~-~i~~~~D~ 246 (612)
||++|+. +|++++|||||+|||+.++.++.+.++++.+ +. ..+|++++|+.+. .+.+++|+
T Consensus 167 la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 167 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 9999999 9999999999999999999999999999852 22 3678999998872 26677776
Q ss_pred EE-EEcCC
Q 046991 247 LV-LLSNG 253 (612)
Q Consensus 247 v~-lL~~G 253 (612)
+. .|.+|
T Consensus 247 I~~~Lpeg 254 (413)
T 1tq4_A 247 LISDLPIY 254 (413)
T ss_dssp HHHHSCGG
T ss_pred HHHhCccc
Confidence 64 34344
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=8.1e-26 Score=215.11 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=101.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcC-CCCCHHHHHHH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALF-PLLTVEETLMC 132 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~-~~lTv~E~l~~ 132 (612)
||||++++||+++|+||||||||||+|++.+-. ..++ .+..+ ++++|++.-. ..-++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~--------~~~~-----~d~~~---g~~~~~~~~~~~~~~~~~~~-- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT--------EVIS-----SDFCR---GLMSDDENDQTVTGAAFDVL-- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG--------GEEE-----HHHHH---HHHCSSTTCGGGHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC--------eEEc-----cHHHH---HHhcCcccchhhHHHHHHHH--
Confidence 689999999999999999999999999965321 1111 12222 5566654210 000111111
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 046991 133 SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSA--- 209 (612)
Q Consensus 133 ~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~--- 209 (612)
.... +.....|.....+... ..|||||||++||++++.+|++++|||||++||+.
T Consensus 63 --------------~~~~-~~~~~~g~~~~~~~~~-------~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 63 --------------HYIV-SKRLQLGKLTVVDATN-------VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp --------------HHHH-HHHHHTTCCEEEESCC-------CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred --------------HHHH-HHHHhCCCeEEEECCC-------CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 2223345554444332 46999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 210 -------------SALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 210 -------------~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
.+..+.+.|++++++ |.|+|++||+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 669999999998766 899999999986
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=1.4e-28 Score=241.23 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=127.9
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+.+.+++| .++++||+++|+||||||||||+|+|+|+.+. ..+.+.+.+.+.. ...++.++|++|++.+++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHh
Confidence 45678888 69999999999999999999999999999852 3333322222221 2235678999999888888888
Q ss_pred HHHHHHHHHc----cCCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCE
Q 046991 127 EETLMCSALL----RLTAGRRKQAASRVRGL------LKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAV 196 (612)
Q Consensus 127 ~E~l~~~~~l----~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~l 196 (612)
.|++...... ...+.++++.++++++. ++.+|+.+.++..++ .|| +|+.+|++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~lS-----------~l~~~p~~ 144 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE------AVT-----------VFLAPPSW 144 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT------SEE-----------EEEECSCH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC------cEE-----------EEEECCCH
Confidence 8876421100 11112344555667666 667777766666664 677 89999999
Q ss_pred EEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 197 VLIDEPTSGL----DSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 197 llLDEPtsgL----D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
++|||||+|+ |+..+..+.+.+++++++.|.|+|+++||++ ++.++||++++|..
T Consensus 145 ~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 145 QDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 9999999998 7889999999999997666899999999998 59999999999853
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=5.3e-25 Score=211.12 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=102.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA 140 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 140 (612)
.++|+||||||||||+++|+|++. |.++|.+.. ....++.+||++|+. ++.+++. +.+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~~--~~~~--~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKIF--SSKF--F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEEE--EETT--C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHHH--Hhhc--C
Confidence 589999999999999999999974 233443321 113467799999976 2333331 1110 0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 046991 141 GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVD-----LVHDPAVVLIDE--PTSGLDSASALH 213 (612)
Q Consensus 141 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~-----L~~~p~lllLDE--PtsgLD~~~~~~ 213 (612)
. -.+..++++. .||||||||++||++ |+.+|++++||| ||++||+.....
T Consensus 65 -~----------------~~~~~~~~~~------~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 -T----------------SKKLVGSYGV------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -C----------------CSSEETTEEE------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -C----------------cccccccccc------CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0023445554 899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcc---CCchHHHhccCeEEEEcCCeEEE
Q 046991 214 VVTLLKSMVVNQGKTIILTIH---QPGFRILELFDRLVLLSNGFVVH 257 (612)
Q Consensus 214 i~~~L~~l~~~~g~tii~~~H---~~~~~i~~~~D~v~lL~~G~iv~ 257 (612)
+.+.+++ .+.|+|+++| +.. .+.+++|+ .+|+++.
T Consensus 122 l~~~l~~----~~~~~i~~~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD----PNVNVVATIPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC----TTSEEEEECCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred HHHHHhc----CCCeEEEEEccCCCch-HHHHHHhc----CCcEEEE
Confidence 9988865 4677888885 665 47788887 5567655
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=9.7e-28 Score=248.13 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=121.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
+++|+++|+++++||+++|+||||||||||+++|+|++ +|+|. +|++|++.+++. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~---------------~~v~q~~~lf~~-ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL---------------SFANHKSHFWLA-SLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE---------------CGGGTTSGGGGG-GGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE---------------EEecCccccccc-cHHH
Confidence 56999999999999999999999999999999999997 58883 456777777764 7776
Q ss_pred -HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046991 129 -TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD 207 (612)
Q Consensus 129 -~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 207 (612)
|+.+.. ..+. .+.+.++.+ |.+..+ | ..|||||||| ||+|+.+|+||| ||+||
T Consensus 172 ~ni~~~~-----~~~~-----~~~~~i~~~-L~~gld---g-----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 TRAALVD-----DATH-----ACWRYFDTY-LRNALD---G-----YPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp CSCEEEE-----EECH-----HHHHHHHHT-TTGGGG---T-----CCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred HhhccCc-----cccH-----HHHHHHHHH-hHccCC---c-----cCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 765421 1111 344555553 444334 3 3799999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHHh
Q 046991 208 SASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLKS 270 (612)
Q Consensus 208 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 270 (612)
+.+...+.. .+|+++ ..+.+|++ +|++|++++.|+.+++...+.+
T Consensus 226 ~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 226 VQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp STTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 999888752 189986 46899999 9999999999999988555544
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=4.4e-25 Score=228.87 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=137.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChh-------hh--cccEEEEecCCC-cC
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE-------HF--RRISGYVTQDDA-LF 121 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~-l~ 121 (612)
++++|+++++|++++|+||||||||||++.|+|++++ .+|+|.++|.+.... .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999999876 589999999886431 22 346999999998 88
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCC--EEEE
Q 046991 122 PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA--VVLI 199 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~--lllL 199 (612)
+.+|++|++.++.... . ...+++.+|+.+..++.++ +|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~---~--------d~~lldt~gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG---Y--------DVVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT---C--------SEEEECCCCCSSCCHHHHH------HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC---C--------cchHHhcCCCCcchhHHHH------HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 9999999998754211 0 0135677888877777776 899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc--------hHHHhccCeEEEEcCCeE
Q 046991 200 DEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG--------FRILELFDRLVLLSNGFV 255 (612)
Q Consensus 200 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~--------~~i~~~~D~v~lL~~G~i 255 (612)
| ||+|||+.++ ++++.++.|.|+|++||..+ ..+....+.|..+..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999865 34555456899999999432 113355678888888865
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=5.6e-25 Score=224.67 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=101.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCH
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRR 143 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 143 (612)
.++|+||||||||||+|+|+|+..+ .+|+|.++|+++.....++.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~----- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN----- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc-----
Confidence 4899999999999999999999977 789999999987655556789999999999999999999988753321
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 046991 144 KQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223 (612)
Q Consensus 144 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 223 (612)
.+..+.+.+.++ .+..+...+ +||||||||+++||+++. ++++|||++|||+.. .+.++.+.+
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 111123333333 445556665 899999999999999875 999999999999987 456666654
Q ss_pred cCCcEEEEEccCCc
Q 046991 224 NQGKTIILTIHQPG 237 (612)
Q Consensus 224 ~~g~tii~~~H~~~ 237 (612)
. .+||+++|..+
T Consensus 140 -~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 -V-VNIIPVIAKAD 151 (270)
T ss_dssp -T-SEEEEEETTGG
T ss_pred -c-CcEEEEEeccc
Confidence 3 79999998854
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=4.7e-25 Score=239.65 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=143.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCe---eCCh--------hhhcccEEEEec
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR---PMDA--------EHFRRISGYVTQ 116 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~---~~~~--------~~~~~~i~yv~Q 116 (612)
++.+|+++ +.+.+||+++|+||||||||||+++|+|+.++ .+|.|.++|+ ++.. ..+++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 46799999 99999999999999999999999999999976 6899999998 4321 236678999999
Q ss_pred C-CCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCC
Q 046991 117 D-DALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA 195 (612)
Q Consensus 117 ~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ 195 (612)
+ +..++.+||.+|+.+.+..... . .-......+. +. .+|+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~------~---------~~~v~~~ld~-l~------~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD------R---------GQHVLLIMDS-LT------RYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT------T---------TCEEEEEEEC-HH------HHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh------C---------CCCHHHHHHh-HH------HHHHHH-HHHHHH---hCCCc
Confidence 5 5667788999999876532100 0 0011111222 22 799999 999999 88888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCc-----EEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 196 VVLIDEPTSGLDSASALHVVTLLKSMVV---NQGK-----TIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 196 lllLDEPtsgLD~~~~~~i~~~L~~l~~---~~g~-----tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+ |+|||+.....+.++++++.+ +.|+ ||++++||++ ...+|++++|.+|+++.+|+++++
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 8 999999999999999999875 2375 9999999997 468999999999999999887654
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=8e-24 Score=223.75 Aligned_cols=174 Identities=17% Similarity=0.153 Sum_probs=138.3
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChh-------hh--cccEEEEecCCC-cCC
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE-------HF--RRISGYVTQDDA-LFP 122 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~-l~~ 122 (612)
+++|+++++|++++|+||||||||||++.|+|++++ .+|+|.++|.+.... .+ +..++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468899999999999999999999999999999875 589999999886421 12 356999999988 889
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCC--EEEEe
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA--VVLID 200 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~--lllLD 200 (612)
.+|++|++.++.... .. ..+++.+|+.+..+..+. +|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~---~d--------~~lldt~Gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG---YD--------VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT---CS--------EEEEECCCCSSCCHHHHH------HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC---CH--------HHHHHhcCCChhhhhHHH------HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 999999998764211 00 135667888877777776 799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc--------hHHHhccCeEEEEcCCeE
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG--------FRILELFDRLVLLSNGFV 255 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~--------~~i~~~~D~v~lL~~G~i 255 (612)
||+|||+.++. +++.++.|.|+|++||... .-.....+.|..+..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 4454456899999999421 113456678888888864
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=1.8e-21 Score=225.18 Aligned_cols=109 Identities=24% Similarity=0.401 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046991 146 AASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDP--AVVLIDEPTSGLDSASALHVVTLLKSMV 222 (612)
Q Consensus 146 ~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~ 222 (612)
..++++ .++.+||.+. .++.+. +|||||||||.||++|..+| ++|+|||||+|||+.+...+.++|+++.
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~------tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTP------TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGG------GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCcCCccCCcC------cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 345555 6889999865 688776 89999999999999999999 5999999999999999999999999996
Q ss_pred HcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhH
Q 046991 223 VNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHL 264 (612)
Q Consensus 223 ~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 264 (612)
+.|.|||+++|+++ +.+.||+|++| ++|++++.|+++++
T Consensus 429 -~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 429 -RGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp -TTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred -HcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 46899999999985 45789999999 79999999998875
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.85 E-value=8.5e-23 Score=210.84 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=127.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee-EEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG-KLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G-~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.+.+..++++++..+.|+.. +++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45689999999999999999999999999999999999865 346 67665544444444444433343322 123
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGE-RRRASIGVDLVHDPAVVLIDEPTS- 204 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGe-rqRv~ia~~L~~~p~lllLDEPts- 204 (612)
.+++.... + +.++..+.++++++..++. . +..++ .+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~-----~~~~~~~~~~~~l~~~~l~-i-~~~~~------~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I-----ENGKFDQWFDELFGNDTFH-L-YDSFA------EAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H-----HHTHHHHHHHHHHSSSCEE-E-ECCCC------SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C-----CHHHHHHHHHHHhccCCEE-E-ECCCC------CCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 34443321 1 1223334455555433332 1 11112 588998 66777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHHcCCcEEEEEccCC--ch-------------------HHHhccCeEEEEcCCeE
Q 046991 205 --G---LDS-ASALHVVTLLKSMVVNQGKTIILTIHQP--GF-------------------RILELFDRLVLLSNGFV 255 (612)
Q Consensus 205 --g---LD~-~~~~~i~~~L~~l~~~~g~tii~~~H~~--~~-------------------~i~~~~D~v~lL~~G~i 255 (612)
+ +|. .....+++.|++++++.|.|||+++|+. +. .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6778899999999887799999999996 31 47789999999998874
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=1.1e-25 Score=222.62 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=102.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----hhhcccEEEEecCCCcCCCC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----EHFRRISGYVTQDDALFPLL 124 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~l 124 (612)
..-|+||||++++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ...++.++|++|++.+++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999987 3 88888 765422 12456789999998766544
Q ss_pred CH-HHHHHH---HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHH-----HHHHhhCCC
Q 046991 125 TV-EETLMC---SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASI-----GVDLVHDPA 195 (612)
Q Consensus 125 Tv-~E~l~~---~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~i-----a~~L~~~p~ 195 (612)
+. .+++.+ .... .+.+. +.++++++...+. ..+ ..+|||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~--~g~~~----~~i~~~l~~~~~~-il~---------~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNF--YGTLK----SEYDKAKEQNKIC-LFE---------MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEE--EEEEH----HHHHHHHHTTCEE-EEE---------ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhccccc--CCCcH----HHHHHHHhCCCcE-EEE---------ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 31 122211 0110 01122 3456666654331 112 2699999999999 889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 046991 196 VVLIDEPTSGLDSASALHVVTLLKSMVV 223 (612)
Q Consensus 196 lllLDEPtsgLD~~~~~~i~~~L~~l~~ 223 (612)
+++|||||+++|..+...+.+.|++..+
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998887754
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=1.8e-22 Score=202.98 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=112.5
Q ss_pred cCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCC
Q 046991 46 KDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 46 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 125 (612)
.+++.+|+|+||++++|+++||.||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 35678999999999999999999999999999999999975 333333 3467799999985 778899
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSG 205 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 205 (612)
+.|++.+.........+.....+.+.+.++.+ .+..+..+. .+|+||+||+.+ ++++.+|+++++|||...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~------~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVP------TYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEEC------CEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred HhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecc------cccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 99999765432111111111233445555543 344555665 899999999988 578889999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHH-hccCeEEEEcCCeEEEecChhhHHHH
Q 046991 206 LDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRIL-ELFDRLVLLSNGFVVHNGTLNHLEER 267 (612)
Q Consensus 206 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~-~~~D~v~lL~~G~iv~~G~~~~~~~~ 267 (612)
.|.. +.++ .+.+|++++|+.. .+. .+++++ ++|+ +.+++.+.
T Consensus 146 ~~~~--------l~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 146 YSQE--------IRDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp TSHH--------HHTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHH
T ss_pred ccHH--------HHHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 8863 2222 3789999999743 343 344444 5564 45555443
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=8e-21 Score=201.03 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=74.4
Q ss_pred ccChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 175 GISGGERRRASIGVDLV---------HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-c---cCC
Confidence 69999999999999999 8999999999999999999999999998863 699999994 4 2 899
Q ss_pred eEEEEcCCeEEEecChhhH
Q 046991 246 RLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 246 ~v~lL~~G~iv~~G~~~~~ 264 (612)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=2e-22 Score=211.56 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=108.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC-hhhhcccEEEEecCCCcCCCCCHHHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD-AEHFRRISGYVTQDDALFPLLTVEET 129 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~E~ 129 (612)
+++++|+.+++|++++|+||||||||||+++|+|++++ .+|.|.++|.+.. ....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 79999999999999999999999999999999999977 6899999986421 111233334332
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046991 130 LMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209 (612)
Q Consensus 130 l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 209 (612)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 789999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeE
Q 046991 210 SALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFV 255 (612)
Q Consensus 210 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~i 255 (612)
.++.+.|+.+. ..+.|+|+|+|+++ +.+.+||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 23567777764 44558999999987 5788999999988853
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.83 E-value=1.9e-22 Score=212.95 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=131.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC----------hhhhcccEEEEecC
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD----------AEHFRRISGYVTQD 117 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~----------~~~~~~~i~yv~Q~ 117 (612)
+..+|+++ +.+.+||+++|+||||||||||+++|+|..++ ..|.|.+.|++.. ...+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 56799999 99999999999999999999999999999976 6899999987521 11244567888875
Q ss_pred CCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCccccc--ccccCCCCCCccChHHHHHHHHHHHHhhCCC
Q 046991 118 DALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVAS--SRIGGGSSNCGISGGERRRASIGVDLVHDPA 195 (612)
Q Consensus 118 ~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ 195 (612)
+. +..+.+.-.. ....+.+.....+- +... ..+. .+|+|| ||+++| +.+|+
T Consensus 135 ~~-----~~~~r~~~~~-----------~~~~~ae~~~~~~~-~vl~~ld~~~------~lS~g~-r~v~la---l~~p~ 187 (347)
T 2obl_A 135 DR-----PALERMKAAF-----------TATTIAEYFRDQGK-NVLLMMDSVT------RYARAA-RDVGLA---SGEPD 187 (347)
T ss_dssp TS-----CHHHHHHHHH-----------HHHHHHHHHHTTTC-EEEEEEETHH------HHHHHH-HHHHHH---TTCCC
T ss_pred CC-----CHHHHHHHHH-----------HHHHHHHHHHhccc-cHHHHHhhHH------HHHHHH-HHHHHH---cCCCC
Confidence 42 2333322110 00011111111111 1110 2233 799999 899999 68888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCc-----EEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 196 VVLIDEPTSGLDSASALHVVTLLKSMVV-NQGK-----TIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 196 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+ |+|||+.....+.++++++.+ +.|. ||++++||++ ..+||++.+|.+|+++.+|+.++.
T Consensus 188 ~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 188 V------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp C------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred c------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 7 999999999999999999865 4587 9999999997 367999999999999999877654
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=5.3e-24 Score=221.77 Aligned_cols=123 Identities=12% Similarity=0.052 Sum_probs=100.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRL 138 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 138 (612)
+++|+++||+||||||||||+++|+|++++ ..|+ +.+++|+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999999876 3332 458999999999988 99999854211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 139 TAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
.+.+.....+++.++++.++ ....+..+. .|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~------~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACAP------VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEEE------EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCcc------cCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11122233466788888888 555556665 8999999999999999999999999999999986
No 86
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=3.3e-20 Score=195.47 Aligned_cols=75 Identities=25% Similarity=0.431 Sum_probs=67.8
Q ss_pred CccChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 174 CGISGGERR------RASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 174 ~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++ |.|||++|||++ +.+.||++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhCCEE
Confidence 489999999 677788888899999999999999999999999999998654 789999999964 68899999
Q ss_pred EEEc
Q 046991 248 VLLS 251 (612)
Q Consensus 248 ~lL~ 251 (612)
+.|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=3.1e-21 Score=224.95 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=125.0
Q ss_pred HHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCC------HHHHHHHHH
Q 046991 78 LLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGR------RKQAASRVR 151 (612)
Q Consensus 78 LL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~------~~~~~~~v~ 151 (612)
...|..+++++ ..|+|.++|+++.. +..+|+.|++.|...+.+.... ..+..++..
T Consensus 384 C~~C~g~rl~~--~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 384 CSVCGGRRLNR--EALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp CTTTCSCCBCT--TGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred chhcccccCCh--HhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34555566655 67899999987632 2335777887775443322110 011223445
Q ss_pred HHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcE
Q 046991 152 GLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHDPA--VVLIDEPTSGLDSASALHVVTLLKSMVVNQGKT 228 (612)
Q Consensus 152 ~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 228 (612)
+.+..+||... .++.++ +|||||||||+||++|+.+|+ +|+|||||+|||+.+...++++|+++++ .|.|
T Consensus 446 ~~L~~vgL~~l~l~r~~~------~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~T 518 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSAT------TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNT 518 (916)
T ss_dssp HHHHTTTCTTCBTTSBGG------GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCE
T ss_pred HHHHHcCCccccccCCcc------cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCE
Confidence 77888999865 577776 899999999999999999887 9999999999999999999999999964 5899
Q ss_pred EEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 229 IILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 229 ii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
||+++||++ ....||++++| ++|++++.|+++++.
T Consensus 519 vivVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 519 VIVVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEEECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 999999986 34569999999 899999999998864
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.9e-20 Score=208.20 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=70.1
Q ss_pred CCcc-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 173 NCGI-SGGERRRASIGVDLVHDP--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 173 ~~~L-SgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
...| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ +...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHH--HHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEE
Confidence 3467 999999999999999999 99999999999999999999999999974 789999999986 4567999999
Q ss_pred EcCC
Q 046991 250 LSNG 253 (612)
Q Consensus 250 L~~G 253 (612)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=1.9e-21 Score=230.23 Aligned_cols=175 Identities=17% Similarity=0.207 Sum_probs=122.5
Q ss_pred ceEEEee-----eEEEEecccccccceecccccccCccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHc
Q 046991 17 CRLETKN-----LSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARP-------GEITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 17 ~~l~~~~-----ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIlG~nGsGKTTLL~~L~G 84 (612)
..|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||+| |
T Consensus 749 ~~l~i~~~rHP~l~~~~~-----------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF-----------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp CCEEEEEECCCC-----------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred ceEEEEeccccEEEEEec-----------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence 3588998 776551 346799999999987 999999999999999999999 9
Q ss_pred CCCCCceeeEEEECCeeCChhhhcccEE-EEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccc
Q 046991 85 KISSRKVSGKLLVNDRPMDAEHFRRISG-YVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVA 163 (612)
Q Consensus 85 ~~~~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~ 163 (612)
+..+ + .++| ||||+.. .+||.|++.. + +|+.+..
T Consensus 811 l~~~------------------~-aqiG~~Vpq~~~---~l~v~d~I~~----r-------------------ig~~d~~ 845 (1022)
T 2o8b_B 811 LLAV------------------M-AQMGCYVPAEVC---RLTPIDRVFT----R-------------------LGASDRI 845 (1022)
T ss_dssp HHHH------------------H-HTTTCCEESSEE---EECCCSBEEE----E-------------------CC-----
T ss_pred HHHH------------------H-hheeEEeccCcC---CCCHHHHHHH----H-------------------cCCHHHH
Confidence 8732 1 2344 9999863 4566665420 1 2222221
Q ss_pred cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHcCCcEEEEEccCCchHHHh
Q 046991 164 SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASA-LHVVTLLKSMVVNQGKTIILTIHQPGFRILE 242 (612)
Q Consensus 164 ~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~-~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~ 242 (612)
..... .+|++++ ++++|++++++|+++||||||+|+|+... ..+..+|+.++++.|.++|++||+.+. +..
T Consensus 846 ~~~~s------tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~ 917 (1022)
T 2o8b_B 846 MSGES------TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VED 917 (1022)
T ss_dssp ----C------HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHH
T ss_pred hhchh------hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHH
Confidence 11122 5777666 49999999999999999999999999985 557889999976558999999999974 777
Q ss_pred ccCeEEEEcCCeEE--EecChhh
Q 046991 243 LFDRLVLLSNGFVV--HNGTLNH 263 (612)
Q Consensus 243 ~~D~v~lL~~G~iv--~~G~~~~ 263 (612)
.+|++.++ +|++. +.|++++
T Consensus 918 ~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 918 YSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TSSCSSEE-EEEEEEC-------
T ss_pred hCCcceee-cCeEEEEEecCccc
Confidence 89998887 58887 4565543
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=9.8e-23 Score=227.15 Aligned_cols=170 Identities=19% Similarity=0.098 Sum_probs=124.3
Q ss_pred CccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCceeeEEEECCeeCCh--hhhcccEEEEecCCCcC
Q 046991 47 DPKFILKDVSC-EARPGEITAIAGPSGAGKTTLLEI--LAGKISSRKVSGKLLVNDRPMDA--EHFRRISGYVTQDDALF 121 (612)
Q Consensus 47 ~~~~iL~~vs~-~i~~Ge~~aIlG~nGsGKTTLL~~--L~G~~~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~ 121 (612)
.+.++|++||+ .+++||+++|+||||||||||+++ ++|+.++ .+|+|+++|++... ...++.+||++|++...
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 45779999999 999999999999999999999999 7899865 58999999987422 23446789999975432
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 122 PLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
++ +.+ +.... . ++..++++.+++.+..++.+. .||||| |+++++||
T Consensus 101 ~~------l~~---~~~~~-~-----~~~~~~l~~~~l~~~~~~~~~------~LS~g~-------------~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP-D-----PEGQEVVGGFDLSALIERINY------AIQKYR-------------ARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC-C-----SSCCSCCSSHHHHHHHHHHHH------HHHHHT-------------CSEEEEEC
T ss_pred Cc------EEE---EecCc-c-----cchhhhhcccCHHHHHHHHHH------HHHHcC-------------CCEEEECC
Confidence 11 100 11100 0 011123344444444444443 566664 78999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH--------HHhccCeEEEEcCC
Q 046991 202 PTS-----GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR--------ILELFDRLVLLSNG 253 (612)
Q Consensus 202 Pts-----gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~--------i~~~~D~v~lL~~G 253 (612)
||+ +||+..+..+.++++++++ .|+|||+++|+++.. ...+||++++|++|
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 998 5699999999999999976 589999999999841 24559999999984
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=4.9e-20 Score=205.37 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=120.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHH
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSAL 135 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 135 (612)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.+++|++. .++.++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH---T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH---H
Confidence 558999999999999999999999999998754 242 12445566541 02222221 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 046991 136 LRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSA-----S 210 (612)
Q Consensus 136 l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~-----~ 210 (612)
+. ... ++ +...|+.+..+..+. .|||||+||+.+|+++..+|+++++| ||+|||.. .
T Consensus 331 ~g---~~~-------~~-~~~~g~~~~~~~~p~------~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 331 WG---MDF-------EE-MERQNLLKIVCAYPE------SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp TS---CCH-------HH-HHHTTSEEECCCCGG------GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred cC---CCH-------HH-HHhCCCEEEEEeccc------cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 111 12 234677776666665 89999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEccCC----------chHHHhccCeEEEEcCCe
Q 046991 211 ALHVVTLLKSMVVNQGKTIILTIHQP----------GFRILELFDRLVLLSNGF 254 (612)
Q Consensus 211 ~~~i~~~L~~l~~~~g~tii~~~H~~----------~~~i~~~~D~v~lL~~G~ 254 (612)
+..+.++++.+++ .|.|||+++|+. . .+..++|++++|++|+
T Consensus 393 ~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 9999999998864 689999999998 5 4678999999999886
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.80 E-value=1.9e-20 Score=219.23 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=113.2
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH--------HcCCCCCceeeEEEECCeeCChhhhcccEEEEecCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEIL--------AGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDD 118 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L--------~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 118 (612)
+.+.+++|+++.+++|++++|+||||||||||||++ .|..-| .++.. ++.+ +
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~---------------~~~~---d 706 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE---------------VSIV---D 706 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE---------------EECC---S
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc---------------chHH---H
Confidence 456799999999999999999999999999999999 443322 11110 1100 0
Q ss_pred CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHH--hhCCCE
Q 046991 119 ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDL--VHDPAV 196 (612)
Q Consensus 119 ~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L--~~~p~l 196 (612)
. ++..+|+.+ ... +++|+|++++..+|++| +++|++
T Consensus 707 ~---------------------------------i~~~ig~~d---~l~------~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 707 C---------------------------------ILARVGAGD---SQL------KGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp E---------------------------------EEEECC------------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred H---------------------------------HHHhcCchh---hHH------HhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0 111122221 111 26888888888888888 999999
Q ss_pred EEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 197 VLIDEPTSGLDSASALHV-VTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 197 llLDEPtsgLD~~~~~~i-~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
+||||||+|||+.....+ ..+++.++++.|.++|++||+.+ +.+++|++..+.+|++...++.+++
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999999888 67778887656899999999964 6789999999999999988776553
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=2.4e-19 Score=207.89 Aligned_cols=134 Identities=29% Similarity=0.444 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHccCCCCCH-------HHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhhC
Q 046991 122 PLLTVEETLMCSALLRLTAGRR-------KQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVHD 193 (612)
Q Consensus 122 ~~lTv~E~l~~~~~l~~~~~~~-------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~ 193 (612)
..+||.|++.|...+.++.... ++..+++ +.|+.+||... .++.++ +|||||||||.||++|..+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~------tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG------TLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG------GCCHHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc------cCCHHHHHHHHHHHHHhhC
Confidence 4579999999977765432100 2344555 46899999865 688887 8999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhHH
Q 046991 194 P--AVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHLE 265 (612)
Q Consensus 194 p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 265 (612)
| ++|+|||||+|||+.....+++.|+++. +.|.|||+++|+++ ..+.||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 9999999999999999999999999996 56899999999986 34689999999 799999999998753
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=2.6e-21 Score=193.54 Aligned_cols=163 Identities=16% Similarity=0.072 Sum_probs=106.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCceeeEEEECCeeCCh--hhhcccEEEEecCCCcCCCCCHHHHHHH
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILA--GKISSRKVSGKLLVNDRPMDA--EHFRRISGYVTQDDALFPLLTVEETLMC 132 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~--G~~~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 132 (612)
+.+++||+++|+||||||||||+++|+ |..++ .+|.+.+++..... ....+.+++++|+....+.+++.++...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 379999999999999999999999999 66333 36777777765322 2233456777777655555555554322
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----
Q 046991 133 SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD----- 207 (612)
Q Consensus 133 ~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD----- 207 (612)
.... ........ .. ..+.++..+...+..-..+|+++++||||++||
T Consensus 103 ~~~~---------~~~~~~~~-------------~~------~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGL---------PSEEKFVL-------------ED------RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred cccc---------ccccceec-------------cC------cccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 1100 00000000 10 223444444444444468999999999999998
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEccCCchHH---------Hhcc-CeEEEEc
Q 046991 208 SASALHVVTLLKSMVVNQGKTIILTIHQPGFRI---------LELF-DRLVLLS 251 (612)
Q Consensus 208 ~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i---------~~~~-D~v~lL~ 251 (612)
+..+..+.++++.+++ .|+|||+++|+++. + ..+| |++++|+
T Consensus 155 ~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLE-MGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-CCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 6777779999998865 58999999999874 5 5788 9999995
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=8.6e-19 Score=203.91 Aligned_cols=136 Identities=25% Similarity=0.419 Sum_probs=111.0
Q ss_pred CCCCCHHHHHHHHHHccCCCCCH-------HHHHHHHHHHHHHcCCccc-ccccccCCCCCCccChHHHHHHHHHHHHhh
Q 046991 121 FPLLTVEETLMCSALLRLTAGRR-------KQAASRVRGLLKELGLDHV-ASSRIGGGSSNCGISGGERRRASIGVDLVH 192 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~-------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~~LSgGerqRv~ia~~L~~ 192 (612)
+..+||.|.+.|...+.++.... ++..+++ +.++.+||... .++.++ +|||||||||.||++|..
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~------tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA------TLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG------GCCHHHHHHHHHHHHHTT
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc------cCCHHHHHHHHHHHHHhh
Confidence 44579999999854443321000 2334555 45889999865 688876 899999999999999999
Q ss_pred C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE------cCCeEEEecChhhH
Q 046991 193 D--PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL------SNGFVVHNGTLNHL 264 (612)
Q Consensus 193 ~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 264 (612)
+ |++|+|||||+|||+.....+.+.|+++. +.|.|||+++|+++ ..+.||+|++| ++|++++.|+++++
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDEL 615 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHh
Confidence 9 58999999999999999999999999996 46899999999986 35689999999 78999999999886
Q ss_pred HH
Q 046991 265 EE 266 (612)
Q Consensus 265 ~~ 266 (612)
.+
T Consensus 616 ~~ 617 (993)
T 2ygr_A 616 LR 617 (993)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 96
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=3.5e-21 Score=199.63 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=89.4
Q ss_pred cccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCC
Q 046991 44 SKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK-ISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFP 122 (612)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~-~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~ 122 (612)
+.++++.+++++++++ +|+||||||||||++.|.|. ..+ .+| |.++|.++......+.+++++|++....
T Consensus 6 ~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~ 76 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKL 76 (301)
T ss_dssp ------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCE
T ss_pred ceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCccc
Confidence 3446788999999998 99999999999999999997 544 678 8888877643222356899999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
.+|+.|+..++.... ..+.....++.+ .+..+..+. ++|||||||+.+|++++ ++++|||
T Consensus 77 ~ltv~Dt~g~~~~~~----~~e~~~~l~~~l------~~~~~~~~~------~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 77 RLTVVDTPGYGDAIN----CRDCFKTIISYI------DEQFERYLH------DESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp EEEEEEEC---------------CTTHHHHH------HHHHHHHHH------HHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred CcchhhhhhhhhhcC----cHHHHHHHHHHH------HHHHHHHHH------HhCHHhhhhhhhhhhhh----eeeeecC
Confidence 899999987753221 001111112221 223345554 89999999999988875 9999999
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 203 TS-GLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 203 ts-gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
|+ |||+... +.++++.++.+.++|++.||..
T Consensus 137 t~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 98 5999873 5666665545789999999975
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.76 E-value=2.7e-20 Score=183.76 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=98.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-----eeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHH
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGKISSRK-----VSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLM 131 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~-----~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 131 (612)
+-+++||+++|+||||||||||+++|+|...+.+ ..|.+++++++... .+.+++++|+..+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654422 23466666654211 1123333443333322 3333332
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHH-HHHHHHHHHHhh-------CCCEEEEeCCC
Q 046991 132 CSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGE-RRRASIGVDLVH-------DPAVVLIDEPT 203 (612)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGe-rqRv~ia~~L~~-------~p~lllLDEPt 203 (612)
+. . ..++++ ++++..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------R------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------E------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------e------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 11 0 123333 233444555544 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHHcCCcEEEEEccCCch---HHHhccCeEEEEcCCe
Q 046991 204 SGLDSA-------S-----ALHVVTLLKSMVVNQGKTIILTIHQPGF---RILELFDRLVLLSNGF 254 (612)
Q Consensus 204 sgLD~~-------~-----~~~i~~~L~~l~~~~g~tii~~~H~~~~---~i~~~~D~v~lL~~G~ 254 (612)
+++|+. . ...+++.|++++++.|.|||+++|+.+. .+...+|+++.|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999984 1 2378888888887779999999994431 2778999999998753
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=1.1e-19 Score=184.66 Aligned_cols=132 Identities=20% Similarity=0.365 Sum_probs=99.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCce-eeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKV-SGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
++|+++| +++|++++|+||||||||||+++|+|++++ . +|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 5899999 999999999999999999999999999865 5 89999998775310 11111222221
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
.+|++. . .+ |++||++|..+|+++++|||| |+
T Consensus 79 ---------------------------~~gl~~------~------~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 79 ---------------------------EVGEDT------K------SF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp ---------------------------EBTTTB------S------CH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred ---------------------------HhCCCH------H------HH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 122211 1 23 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
.+...++ +. ++ .|.+|++++|+.+ +.+.+||++.|..
T Consensus 111 ~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 8866544 33 33 4889999999986 5688999988754
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.75 E-value=3.5e-19 Score=207.99 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=106.4
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+++.|++|+|+++++|++++|+||||||||||||++++..-.. ..| ..+... -+.+..-+.++..+
T Consensus 658 ~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g------~~vpa~-----~~~i~~~d~i~~~i-- 723 (918)
T 3thx_B 658 QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIG------SYVPAE-----EATIGIVDGIFTRM-- 723 (918)
T ss_dssp CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHT------CCBSSS-----EEEEECCSEEEEEC--
T ss_pred CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcC------ccccch-----hhhhhHHHHHHHhC--
Confidence 3577999999999999999999999999999999998653110 111 001000 01111111122222
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
|+.+......+ .+|+||+|++.|+++ +.+|+++||||||+||
T Consensus 724 -------------------------------g~~d~l~~~~s------tfs~em~~~~~il~~-a~~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 724 -------------------------------GAADNIYKGRS------TFMEELTDTAEIIRK-ATSQSLVILDELGRGT 765 (918)
T ss_dssp -----------------------------------------C------CHHHHHHHHHHHHHH-CCTTCEEEEESTTTTS
T ss_pred -------------------------------ChHHHHHHhHH------HhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 22222222222 789999999999998 8999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE-EcCCeEEE
Q 046991 207 DSASALHVV-TLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL-LSNGFVVH 257 (612)
Q Consensus 207 D~~~~~~i~-~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l-L~~G~iv~ 257 (612)
|+.....+. .+++.++++.|.|+|++||+++ +.+++|+.-- +.++++.+
T Consensus 766 D~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 766 STHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 999999998 7888887656899999999975 5567775421 33444433
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.75 E-value=2.7e-21 Score=189.23 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=116.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcC--CCCCHHHHHHHHHHc
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALF--PLLTVEETLMCSALL 136 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l 136 (612)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++|+..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999998632 489999998776 5689998875421
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------
Q 046991 137 RLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGER----RRASIGVDLVHDPAVVLIDEPTSG------- 205 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGer----qRv~ia~~L~~~p~lllLDEPtsg------- 205 (612)
.. +.....+++.+.++.+++.+..+.++. .+|+||+ ||+++|++++.+|+++++||||++
T Consensus 60 ~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DH---PDAFDLALYLEHAQALLRGLPVEMPVY------DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TS---GGGBCHHHHHHHHHHHHTTCCEEECCE------ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CC---hhhhhHHHHHHHHHHHHcCCCcCCCcc------cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 11 112223567778888888776665543 7899964 788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 206 LDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 206 LD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
||+.....+.+.+++..++.|+|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999998865556889999999743
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=4.1e-18 Score=158.02 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=70.8
Q ss_pred CccChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 174 CGISGGERRRASIG------VDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 174 ~~LSgGerqRv~ia------~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||++. +.+.||++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH--HHHhCCEE
Confidence 48999999999886 8999999999999999999999999999999998654 789999999983 67899999
Q ss_pred EEE--cCCeE
Q 046991 248 VLL--SNGFV 255 (612)
Q Consensus 248 ~lL--~~G~i 255 (612)
++| .+|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=7.1e-20 Score=189.86 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----h---hh--cccEEEEecCCCcCCCCCHHHHHH
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----E---HF--RRISGYVTQDDALFPLLTVEETLM 131 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~---~~--~~~i~yv~Q~~~l~~~lTv~E~l~ 131 (612)
+|++++|+||||||||||++.|+|++++ .+|+|.++|.+... + .+ +..++|++|++.+.|.+||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999999976 58999999988632 1 12 346899999999999899999997
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046991 132 CSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASA 211 (612)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 211 (612)
++.... .-..+++..|+.+..+. .++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~-----------~d~~llDt~G~~~~~~~---------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG-----------YDLLFVDTAGRLHTKHN---------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT-----------CSEEEECCCCCCTTCHH---------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC-----------CCEEEecCCCCCCchHH---------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 642110 00012233444332222 2455569999999999999994444 4555555
Q ss_pred HHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 212 LHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 212 ~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
.++++.++++.++.|.|+|++||+.+
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 56667777776556899999999854
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.72 E-value=1.3e-17 Score=181.12 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=67.4
Q ss_pred ccChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEE
Q 046991 175 GISGGERRRASIGVDLV----HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLL 250 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL 250 (612)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+ .+.++|++||++ +....||+++.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEEEE
Confidence 59999999999999999 57999999999999999999999999999853 478999999995 467889999999
Q ss_pred c
Q 046991 251 S 251 (612)
Q Consensus 251 ~ 251 (612)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=6.1e-19 Score=203.02 Aligned_cols=135 Identities=23% Similarity=0.282 Sum_probs=101.8
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+++.+++|+|++ |++++|+||||||||||||+|+|+... +..|.+. + ..+..+++++| +++.+++
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e----hhccceeeHHH---hhccCCH
Confidence 346799999999 999999999999999999999998631 1345431 1 12345777766 4555566
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDL--VHDPAVVLIDEP-- 202 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L--~~~p~lllLDEP-- 202 (612)
.|++. . ++|+|+++++.+|+++ +++|+++|||||
T Consensus 629 ~d~l~------------------------------------~------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 629 SDDLA------------------------------------G------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp ------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred HHHHH------------------------------------h------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 55442 1 4799999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHHcCCcEEEEEccCCchHHHhcc
Q 046991 203 -TSGLDSASA-LHVVTLLKSMVVNQGKTIILTIHQPGFRILELF 244 (612)
Q Consensus 203 -tsgLD~~~~-~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~ 244 (612)
|++||..+. ..+++.|++ .|.|+|++||+.+ ..+++
T Consensus 667 GTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE----RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHH--HHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHH--HHHhh
Confidence 999998875 578887765 3789999999975 45555
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=7.4e-19 Score=173.27 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=114.6
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcc---cEEEEecCCCcCCC
Q 046991 48 PKFILKDVSC-EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRR---ISGYVTQDDALFPL 123 (612)
Q Consensus 48 ~~~iL~~vs~-~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~---~i~yv~Q~~~l~~~ 123 (612)
+.+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+.......+ ..++.+|+.... .
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 3557888885 8999999999999999999999999988743 4567766554433222111 122222211000 0
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCC--EEEEeC
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPA--VVLIDE 201 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~--lllLDE 201 (612)
+++ .. ...+.++ ...+ ....|.+|.++...+.....+|+ ++++||
T Consensus 85 ~~~---------~~--------------~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 85 LII---------ID--------------ALMKEKE-----DQWS-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp EEE---------EE--------------CCC---------CTTB-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred EEE---------Ee--------------ccccccC-----ceee-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 000 00 0000000 0011 01359999998888888888999 999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHHcCCcEEEEEccCCc-------hHHHhccCeEEEEcCC
Q 046991 202 PTSGL--DSASALHVVTLLKSMVVNQGKTIILTIHQPG-------FRILELFDRLVLLSNG 253 (612)
Q Consensus 202 PtsgL--D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~-------~~i~~~~D~v~lL~~G 253 (612)
||+++ |+.....+++.|++++++.|.|||+++|+.+ ..+.++||++++|++.
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99887 9999999999999998878999999999983 2378899999999764
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.70 E-value=9.7e-20 Score=206.00 Aligned_cols=169 Identities=17% Similarity=0.237 Sum_probs=114.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC------hhhhcccEEEEecCCCcCCCCCHHHHH
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD------AEHFRRISGYVTQDDALFPLLTVEETL 130 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~------~~~~~~~i~yv~Q~~~l~~~lTv~E~l 130 (612)
+.++. +||+|||||||||||++|+|+..| ..+|+|+++|.++. ...+++.++|++|++.+++.+||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 44443 999999999999999999999755 25899999998852 135678899999999999999999999
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC------CC
Q 046991 131 MCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP------TS 204 (612)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP------ts 204 (612)
.+..... +... . ++| ++++.++.+...+|+++++||| |+
T Consensus 119 ~~~~~~~--------------------~~~~---~---------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAI--------------------AGEG---M---------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHH--------------------HCSS---S---------CCC---SCCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHh--------------------cCCc---c---------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 8753211 0000 0 111 1112222233458999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCcEEEEEccCCch------HHHhcc-----CeEEEEcCCeEEEecChhhH
Q 046991 205 GLDSASALHVVTLLKSMVV-NQGKTIILTIHQPGF------RILELF-----DRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 205 gLD~~~~~~i~~~L~~l~~-~~g~tii~~~H~~~~------~i~~~~-----D~v~lL~~G~iv~~G~~~~~ 264 (612)
|||+..+..+.++++++.+ ..+.++++++|+.+. .+.+.. ..|.++.++.++..|+.+++
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHH
Confidence 9999999999999999643 446788899999762 122222 45788899888888876544
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.70 E-value=2.1e-17 Score=169.12 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=108.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLR 137 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 137 (612)
-+++|++++|+||||||||||++.+++... .|+++ .|.+... ...+.|+..++... .+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~---~~~v~~~~~e~~~~---~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP---TGPVIYLPAEDPPT---AIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC---CCCEEEEESSSCHH---HHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC---CccEEEEECCCCHH---HHHHHHH---HHH
Confidence 488999999999999999999999998653 36553 3544321 34578887765320 1112221 111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HH
Q 046991 138 LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS--GLDSAS---AL 212 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts--gLD~~~---~~ 212 (612)
.. .. ....+++++.+++.+..+..+. .+|+||+|++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~~-~~----~~~~~~~~~~l~l~~~~~~~~~------~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 AH-LS----AEERQAVADGLLIQPLIGSLPN------IMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp TT-SC----HHHHHHHHHHEEECCCTTSCCC------TTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred hh-cC----hhhhhhccCceEEeecCCCCcc------cCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11 01 1335677888888877666554 7999998875 58888999999999999 999754 48
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 213 HVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 213 ~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
.+++.|++++++.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8899999998777999999999976
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=2.7e-18 Score=198.76 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=110.7
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
+++.+++|+|+. ++|++++|+||||||||||||+|+|..... .. |..+.. .+..++++.| +++.+++
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~------G~~vpa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YI------GSYVPA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TT------TCCBSS--SEEEECCCCE---EEEEEC-
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hc------Ccccch--hcccceeHHH---HHhhCCH
Confidence 346799999999 999999999999999999999999974221 11 211211 1233555554 4555566
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGL 206 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 206 (612)
.|++... .. .+|++++ +++.+..++.+|+++|||||++|+
T Consensus 660 ~d~l~~~---------------------------------~s------tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 660 ADDLASG---------------------------------RS------TFMVEMT-ETANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp -------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCS
T ss_pred HHHHHhh---------------------------------hh------hhhHHHH-HHHHHHHhccCCCEEEEECCCCCC
Confidence 5554210 01 3566665 455555678999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecC
Q 046991 207 DSASALHV-VTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260 (612)
Q Consensus 207 D~~~~~~i-~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 260 (612)
|+.....+ ..+++.++++.|.++|++||+.+ +.+++|++..+.+|++.+...
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 99888776 77888887645899999999985 457899887777887766543
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.69 E-value=5.8e-19 Score=186.63 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=106.4
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcee----eE-EEECCeeCChhhhcccEEEEecCCCcCCC
Q 046991 50 FILKDV-SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVS----GK-LLVNDRPMDAEHFRRISGYVTQDDALFPL 123 (612)
Q Consensus 50 ~iL~~v-s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~----G~-I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 123 (612)
..|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |+ |++++++.. .++++++++|+..+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987321233 67 888887641 12345666776655443
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh-------hCCCE
Q 046991 124 LTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV-------HDPAV 196 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~-------~~p~l 196 (612)
++.||+.+.. . .. |.+++|++.++++++ .+|++
T Consensus 195 -~v~~ni~~~~---~--~~----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 195 -EVLKHIYVAR---A--FN----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp -HHGGGEEEEE---C--CS----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred -HHhhCEEEEe---c--CC----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 5555543211 0 01 233444444444444 78999
Q ss_pred EEEeCCCCCCCHHH------------HHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecC
Q 046991 197 VLIDEPTSGLDSAS------------ALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGT 260 (612)
Q Consensus 197 llLDEPtsgLD~~~------------~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 260 (612)
+++||||+++|+.. ...+++.|++++++.|+|||+++|... +....++.......|+++.++.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999999852 467778888888878999999999876 3444555556666676655443
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.66 E-value=5.2e-19 Score=170.95 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=105.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA 140 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 140 (612)
||+++|+||||||||||+++|+|+++ .+| |.++|.+... ..+++.+||++|+. ... ++++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc--
Confidence 78999999999999999999999984 468 9999987643 34678899999975 121 1221 11110
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 046991 141 GRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRA-SIGV---DLVHDPAVVLIDE--PTSGLDSASALH 213 (612)
Q Consensus 141 ~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv-~ia~---~L~~~p~lllLDE--PtsgLD~~~~~~ 213 (612)
+.++ ..+..++ .....+|+|||+++ ++++ |+..+|+++++|| |+..+|......
T Consensus 67 -----------------~~~~~~~~~~v~--~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVG--QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCSSSCCEESS--SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------cCCccccccccc--eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0010 0111232 22236999999988 4444 5789999999999 899999876555
Q ss_pred HHHHHHHHHHcCCcEEEE----EccCCchHHHhccCeEEEEcCCeEEEec
Q 046991 214 VVTLLKSMVVNQGKTIIL----TIHQPGFRILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 214 i~~~L~~l~~~~g~tii~----~~H~~~~~i~~~~D~v~lL~~G~iv~~G 259 (612)
+.++++ +. .++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 128 l~~~l~----~~-~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 VRQTLS----TP-GTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHH----CS-SCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HHHHHh----CC-CcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 555554 33 34443 238864 2467888778888887643
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=1.2e-18 Score=169.45 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=99.8
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCcee
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI-----SSRKVS 92 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~-----~~~~~~ 92 (612)
.|+++|+++.+ + ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..
T Consensus 3 ~l~~~~~~~~~------------------~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~--~~ 59 (210)
T 1pui_A 3 NLNYQQTHFVM------------------S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK--TP 59 (210)
T ss_dssp --------CEE------------------E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC------------
T ss_pred chhhhhhhhee------------------e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC--CC
Confidence 47889999887 2 246777 789999999999999999999999999987 33 55
Q ss_pred eEEEECCeeCChhhhcccEEEEecCCCcC----CCCC---HHHHHHHHHH-ccC--------C-CCCHHHHHHHHHHHHH
Q 046991 93 GKLLVNDRPMDAEHFRRISGYVTQDDALF----PLLT---VEETLMCSAL-LRL--------T-AGRRKQAASRVRGLLK 155 (612)
Q Consensus 93 G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~----~~lT---v~E~l~~~~~-l~~--------~-~~~~~~~~~~v~~~l~ 155 (612)
|++...+.-. .....-. .+.+.+. +.-. .+..+..... .+. . ........+++.++++
T Consensus 60 G~~~~~~~~~----~~~~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~ 134 (210)
T 1pui_A 60 GRTQLINLFE----VADGKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 134 (210)
T ss_dssp ---CCEEEEE----EETTEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred ccceeeEEEE----ecCCEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence 6654422100 0000111 1111110 0000 1111211110 000 0 0000112234556677
Q ss_pred HcCCccc-ccccccCCCCCCccChHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 046991 156 ELGLDHV-ASSRIGGGSSNCGISGGERRR-ASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224 (612)
Q Consensus 156 ~lgL~~~-~~~~vg~~~~~~~LSgGerqR-v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 224 (612)
..++... ..+++. .+|+||||| +..+++++.+|+.+++|||||++|.....++.+.|.++.++
T Consensus 135 ~~~~~~~~v~nK~D------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 135 DSNIAVLVLLTKAD------KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HTTCCEEEEEECGG------GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HcCCCeEEEEeccc------CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 7787654 355565 799999999 89999999999999999999999999999999999998643
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=9.1e-18 Score=180.98 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=98.2
Q ss_pred eEEEeeeEEEEecccccccceecccccccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE
Q 046991 18 RLETKNLSYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV 97 (612)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~ 97 (612)
.|+++||++++ +++.+++|+||+| +|+||||||||||+|+|+|...+.+..|.+.+
T Consensus 11 ~l~~~~l~~~y------------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~ 66 (418)
T 2qag_C 11 YVGFANLPNQV------------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSH 66 (418)
T ss_dssp ----CCCCCCT------------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-
T ss_pred cEEEEecceeE------------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCccc
Confidence 46777776544 5678999999998 99999999999999999999864222222222
Q ss_pred CCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccC
Q 046991 98 NDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGIS 177 (612)
Q Consensus 98 ~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LS 177 (612)
++.+ ....+.+++++|++.+++.+||.||+.+..... ..+..+.+.+.++ . .++
T Consensus 67 ~~~~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~-----~~~~~~~i~~~i~---------~---------~~~ 120 (418)
T 2qag_C 67 RIKK---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD-----NSNCWQPVIDYID---------S---------KFE 120 (418)
T ss_dssp -------CCEEEEEECC------CEEEEEEECC----------------CHHHHHHHH---------H---------HHH
T ss_pred CCcc---ceeeeeEEEEEecCCcccceeeeechhhhhhcc-----chhhHHHHHHHHH---------H---------HHH
Confidence 2111 112356899999998888899999997754221 1111112222221 1 366
Q ss_pred hHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 178 GGERRRASIGVDLVHDPA---VVLIDEPT-SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 178 gGerqRv~ia~~L~~~p~---lllLDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
.+++||++||++++.+|+ ++++|||| +|||+... +.++++. . +.+||+++|..+
T Consensus 121 ~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~D 178 (418)
T 2qag_C 121 DYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKAD 178 (418)
T ss_dssp HHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTT
T ss_pred HHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEccc
Confidence 778889999999999999 99999999 69999873 4455554 3 678888888654
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=1e-16 Score=169.62 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=89.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLR 137 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 137 (612)
...+|++++|+|||||||||||++|+|.+++. .+|.|...+.++.. ..+...++++|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecccc--------------
Confidence 67899999999999999999999999998651 25676554444321 122223444443221111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 046991 138 LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTL 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 217 (612)
++-.+ +||++|..+|++|++|||| |..+...
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 12211 8999999999999999999 6655443
Q ss_pred HHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCC
Q 046991 218 LKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNG 253 (612)
Q Consensus 218 L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G 253 (612)
+.++++ .|++|++|+|+.+. + +.+||++.|..|
T Consensus 214 ~~~~~~-~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAE-TGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHH-TTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHh-cCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 344444 48999999999984 4 889999988654
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.61 E-value=2.7e-17 Score=162.60 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=103.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH----HHHHH
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV----EETLM 131 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv----~E~l~ 131 (612)
.-..++|++++|+||||||||||+++|+|+.+|....|.|.+++++... ..++.++|++|++..|+.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3467899999999999999999999999998642378999998876543 235678999997765554444 22221
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046991 132 CSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASA 211 (612)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 211 (612)
+.. ... +.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~~~------------------------------~~y-------g~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFG------------------------------NYY-------GTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETT------------------------------EEE-------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHh------------------------------ccC-------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 100 000 111 222 34455668999999 999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHHH
Q 046991 212 LHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERLK 269 (612)
Q Consensus 212 ~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 269 (612)
.++.+.+. .++||++++|+++ ++.+ |+ +.+| .++++++...+.
T Consensus 121 ~~i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 99998875 3789999999987 3544 43 6777 577777766654
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.60 E-value=5.9e-16 Score=151.46 Aligned_cols=156 Identities=17% Similarity=0.070 Sum_probs=102.7
Q ss_pred cceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 49 KFILKDVS-CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 49 ~~iL~~vs-~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
.+.|+++. +-+++|++++|.||||||||||++.|++ .. ..+.++++.. +.+ +..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~-----------------~~~----~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTE-----------------GGF----SPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESS-----------------CCC----CHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECC-----------------CCC----CHH
Confidence 44677766 4799999999999999999999999999 22 2233333322 211 111
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHH--HHHHHHHHHHhhC-CCEEEEeCCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGE--RRRASIGVDLVHD-PAVVLIDEPTS 204 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGe--rqRv~ia~~L~~~-p~lllLDEPts 204 (612)
+-....... .... +++++.+ .+. ..|+++ ++++..+++++.+ |+++++||||+
T Consensus 61 ~~~~~~~~~---~~~~-------~~~~~~~--------~~~------~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 RLVQMAETR---GLNP-------EEALSRF--------ILF------TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHTT---TCCH-------HHHHHHE--------EEE------CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhc---CCCh-------HHHhhcE--------EEE------ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 111100000 0111 1122222 121 345554 5688888899986 99999999999
Q ss_pred CCCHH--------HHHHHHHHHHHHHHcCCcEEEEEccCCch------------HHHhccCeEEEEcCC
Q 046991 205 GLDSA--------SALHVVTLLKSMVVNQGKTIILTIHQPGF------------RILELFDRLVLLSNG 253 (612)
Q Consensus 205 gLD~~--------~~~~i~~~L~~l~~~~g~tii~~~H~~~~------------~i~~~~D~v~lL~~G 253 (612)
++|+. ....+++.|++++++.|.|||+++|.... .+.+.+|.+++|++.
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99973 33557777899888778999999998651 367899999999754
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.58 E-value=2.6e-19 Score=172.15 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=112.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG 141 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~ 141 (612)
|++++|+||||||||||+++|++. .+|++.++|.++... ...++++|.....+..|++|++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 789999999999999999999982 468899988654211 2346677766555556788887654321100
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCcc--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 046991 142 RRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGI--SGGERRRASIGV------DLVHDPAVVLIDEPTSGLDSASALH 213 (612)
Q Consensus 142 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~L--SgGerqRv~ia~------~L~~~p~lllLDEPtsgLD~~~~~~ 213 (612)
.....+++.+.. ......+ +.+ |+|++|++.++. +++.+|+...+|| ++|+.....
T Consensus 72 ------~~~~~ild~~~~-~~~~~~~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 72 ------AQNDVVLDYIAF-PDEAEAL------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp ------TTCEEEEESCCC-HHHHHHH------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred ------cCCcEEEeeccC-HHHHHHH------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 000001111100 0000111 134 888888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHHcCCcEEEEEccC-CchHHHhccCeEEEEcCCeEEEecChhhH
Q 046991 214 VVTLLKSMVVNQGKTIILTIHQ-PGFRILELFDRLVLLSNGFVVHNGTLNHL 264 (612)
Q Consensus 214 i~~~L~~l~~~~g~tii~~~H~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 264 (612)
.+.++.+. +.+.++|.++|+ ++ ++.+.||+|+ ++|+++.+|+++-+
T Consensus 136 -~~~~~~~~-~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 -VEEFESKG-IDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp -HHHHHHTT-CCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred -HHHHhhcC-CCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888875 457899999999 87 5899999999 99999999988654
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.56 E-value=8.4e-18 Score=161.42 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=98.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChh-hhcccEEEEecCCCcCCCCCHHHHHHHHHHc
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE-HFRRISGYVTQDDALFPLLTVEETLMCSALL 136 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l 136 (612)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.++... ..++.++|++|+.. +.+||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 37799999999999999999999999983 469999998764211 11234577777654 456888988765421
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcccc--cccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 046991 137 RLTAGRRKQAASRVRGLLKELGLDHVA--SSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHV 214 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 214 (612)
..... ....++.+++..++.... +..+. .+|+|++||+.++|++..+|+++ +|+.....+
T Consensus 79 ~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~------~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEG----YFVILDGVVRPDWLPAFTALARPLH------YIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTS----CEEEECSCCCTTTTHHHHTTCSCEE------EEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccC----CeEEEeccCcHHHHHHHHhcCCCeE------EEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 10000 000011111112232222 22232 79999999999999999999876 688888888
Q ss_pred HHHHHHHHHcCCcEEEEEcc
Q 046991 215 VTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 215 ~~~L~~l~~~~g~tii~~~H 234 (612)
.+.++.+.. .+..+|.++|
T Consensus 141 ~~~~~~l~~-~~~~~i~t~~ 159 (191)
T 1zp6_A 141 HSQFADLGA-FEHHVLPVSG 159 (191)
T ss_dssp HHHTTCCGG-GGGGEEECTT
T ss_pred HHHHhccCc-ccccEEECCC
Confidence 887776643 2334454543
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=2.8e-18 Score=182.55 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=105.3
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCcee----eEEEEC----CeeC--ChhhhcccEEEEecCC
Q 046991 51 ILKDVSCEARP--GEITAIAGPSGAGKTTLLEILAGKISSRKVS----GKLLVN----DRPM--DAEHFRRISGYVTQDD 118 (612)
Q Consensus 51 iL~~vs~~i~~--Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~----G~I~~~----g~~~--~~~~~~~~i~yv~Q~~ 118 (612)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++ .+ |+|+++ |.+. ...++ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 46789999999 999999999999999999999999976 56 766653 2221 01111 1233333322
Q ss_pred CcCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh-hCCCEE
Q 046991 119 ALFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV-HDPAVV 197 (612)
Q Consensus 119 ~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~-~~p~ll 197 (612)
.++. .|+.||+.+ ++ .+..++.+. .+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~------------------------~~-~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAF------------------------ID-TDFITTQAF------CIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEE------------------------ES-SCHHHHHHH------HHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEE------------------------Ee-CCchHHHHH------HHHHcCCCCHHHHHHHhhcCCCEE
Confidence 1111 122222211 00 011111221 46777788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 198 LIDE---PT------SGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 198 lLDE---Pt------sgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
+||| |+ .++|+..+..+.+.|+++.++.|.+|++++|. + +..+++|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999998876667899999875 3 3567777766664
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=1.3e-14 Score=137.88 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=67.2
Q ss_pred CccChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE
Q 046991 174 CGISGGERRRASIGVDLVH----DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL 249 (612)
Q Consensus 174 ~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l 249 (612)
..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|+.. ..+.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~--~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDV--MMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHH--HHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHH--HHHhCCEEEE
Confidence 4899999999999999974 4699999999999999999999999999853 468999999964 6789999987
Q ss_pred Ec--CCe
Q 046991 250 LS--NGF 254 (612)
Q Consensus 250 L~--~G~ 254 (612)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=3.7e-16 Score=167.90 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=114.0
Q ss_pred ccCccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCC
Q 046991 45 KKDPKFILKDVSCEARPGEI--TAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFP 122 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~Ge~--~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~ 122 (612)
.+++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.- ...+...++.++|++|++.+++
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~~---~~~~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPAT---HTQPGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--CEE
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcCC---CCCccceEeeEEEEeecCcccc
Confidence 335556 9999999999999 99999999999999999999851 222110 0112223457999999999888
Q ss_pred CCCHHHHHHHHHHccCCCCC---HHHHHHHHHHHHHHc-CCcc----cccccccC-----CCCCCccChHHHHHHHHHHH
Q 046991 123 LLTVEETLMCSALLRLTAGR---RKQAASRVRGLLKEL-GLDH----VASSRIGG-----GSSNCGISGGERRRASIGVD 189 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~---~~~~~~~v~~~l~~l-gL~~----~~~~~vg~-----~~~~~~LSgGerqRv~ia~~ 189 (612)
.+||.||+.++......... .+...+..+++++.. ++.. ..|+.|.. .+...+++-.+ +.|+++
T Consensus 96 ~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~ 172 (427)
T 2qag_B 96 KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKK 172 (427)
T ss_dssp EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHH
T ss_pred ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHH
Confidence 99999998764321000000 011234556666665 5432 12332100 01113577666 789999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCcEEEEEccC
Q 046991 190 LVHDPAVVLIDEPTSGLDSASALHVVTLLKS-MVVNQGKTIILTIHQ 235 (612)
Q Consensus 190 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~-l~~~~g~tii~~~H~ 235 (612)
|..+++++++|||+..|.+.....+.+.+++ +. ..|..|+.++.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 9999999999999999999999999999987 64 568888888764
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.53 E-value=3.1e-17 Score=164.57 Aligned_cols=146 Identities=23% Similarity=0.244 Sum_probs=102.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHc-
Q 046991 61 PGEITAIAGPSGAGKTTLLEILA---GKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALL- 136 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~---G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l- 136 (612)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+.. ....+.+.+++|+..+++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 99865 7899988876532 12333455667888888888999999764321
Q ss_pred -----cCCCCCHHHHHHHHHHHHH--HcC------------CcccccccccCCCCCCccChHHHHHHHHHHHH-hhCCCE
Q 046991 137 -----RLTAGRRKQAASRVRGLLK--ELG------------LDHVASSRIGGGSSNCGISGGERRRASIGVDL-VHDPAV 196 (612)
Q Consensus 137 -----~~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L-~~~p~l 196 (612)
...+.+... +.++.+.+ .++ +....++.+. .||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~------~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIH------PPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE------TTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCc------CCCC----Cc---cccccCCCcc
Confidence 011111111 12222221 223 2333455554 7898 66 677 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHHc
Q 046991 197 VLID----EPTSGLDSASALHVVTLLKSMVVN 224 (612)
Q Consensus 197 llLD----EPtsgLD~~~~~~i~~~L~~l~~~ 224 (612)
++|| |||+|||..+...+.+.++++.++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9999 999999999999999999988653
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.53 E-value=1.4e-15 Score=161.98 Aligned_cols=131 Identities=21% Similarity=0.375 Sum_probs=99.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCce-eeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKV-SGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
.+|++++ +++|++++|+||||||||||+++|+|++++ . +|+|.+.|.++. ...++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 3677776 899999999999999999999999999865 4 799988776654 23456678888841
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
+|++. . .+ +.+|+++|..+|+++++|||+ |+
T Consensus 191 ----------------------------~g~~~------~------~~------~~~l~~~L~~~pd~illdE~~---d~ 221 (372)
T 2ewv_A 191 ----------------------------VGEDT------K------SF------ADALRAALREDPDVIFVGEMR---DL 221 (372)
T ss_dssp ----------------------------BTTTB------S------CS------HHHHHHHTTSCCSEEEESCCC---SH
T ss_pred ----------------------------cCCCH------H------HH------HHHHHHHhhhCcCEEEECCCC---CH
Confidence 22211 1 34 469999999999999999999 77
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEc
Q 046991 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLS 251 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~ 251 (612)
.+... .++. + ..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 222 e~~~~---~l~~-~-~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 222 ETVET---ALRA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHH---HHHH-H-TTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHHH---HHHH-H-hcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 66443 3443 3 35889999999965 677888887664
No 123
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=1e-14 Score=153.78 Aligned_cols=122 Identities=18% Similarity=0.098 Sum_probs=90.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCceeeEEEEC-CeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS-SRKVSGKLLVN-DRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~-~~~~~G~I~~~-g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
-+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |+... ...++.+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 35566653 4899999999999999999999999997 6 68999987 76543 234567899999999999989998
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDL 190 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L 190 (612)
+- +...+.++..+++.++++.+|+.+..+.... ++| ||+||++||+++
T Consensus 281 ~~-------l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~------~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FG-------LWHLEPEQITQGFVEFHDYLGHCKYRDCKHD------ADP-GCAIREAVENGA 328 (358)
T ss_dssp CC-------CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSS------SCT-TCHHHHHHHHTS
T ss_pred hh-------hcCCCHHHHHHHHHHHHHHcCCchhcCCCcc------cCC-HHHHHHHHHhcC
Confidence 41 1223455666778899999999988888776 899 999999999875
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.50 E-value=1.3e-17 Score=174.18 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=108.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------CceeeEEEECCeeCCh------------------hhhcccEEEE---e
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKISS------RKVSGKLLVNDRPMDA------------------EHFRRISGYV---T 115 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~~------~~~~G~I~~~g~~~~~------------------~~~~~~i~yv---~ 115 (612)
++++|+|+||||||||+|.|.|..+. .+..|+|.+||.++.. ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999998621 1368999999987642 1234556777 5
Q ss_pred cCCCcCCCCCHHHHHHHHH--Hc-c-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh
Q 046991 116 QDDALFPLLTVEETLMCSA--LL-R-LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV 191 (612)
Q Consensus 116 Q~~~l~~~lTv~E~l~~~~--~l-~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~ 191 (612)
|+..+++..++.|+..++. .+ + ....+......+++.++..+++.+..++.. ++|+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-------HCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-------hchHHHHHHHhCCEEEE
Confidence 7766666778888775421 00 0 000000000111222334445544444443 58999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccC
Q 046991 192 HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 192 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D 245 (612)
.+|+++ ||| ..+.+.|+++. .+.+|++++|++. ++..++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 999987 999 77888888874 4789999999875 3444544
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.49 E-value=4.7e-15 Score=157.41 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=102.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee-CChhhhcccEEEEe-cCCCcCCCCCHHH
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP-MDAEHFRRISGYVT-QDDALFPLLTVEE 128 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~-Q~~~l~~~lTv~E 128 (612)
+++++|+.+++|++++|+||||||||||+++|+|++++ .+|.|+++|.. +.....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 34999999999999999999999999999999999987 68999999853 22233567789988 54331
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
+++++..+|..|+.++..+|+.+++|||..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233456667777778899999999985
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 209 ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
.++.+.|+.+. ....|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~-~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAA-SGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHH-TTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHh-cCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 24556666664 34558899999975 578899999988764
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.49 E-value=6e-16 Score=145.09 Aligned_cols=83 Identities=20% Similarity=0.111 Sum_probs=69.2
Q ss_pred cccCccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCC
Q 046991 44 SKKDPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPL 123 (612)
Q Consensus 44 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 123 (612)
+.++++.+++++|+++++||+++|+||||||||||+|+|+|.+ | .+|+|.++|.++......+. +++|+..++ .
T Consensus 15 ~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ 88 (158)
T 1htw_A 15 LRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-R 88 (158)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEETT--EEEEEEECT-T
T ss_pred HHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCCC--cceeccccc-c
Confidence 3445677999999999999999999999999999999999999 6 68999999987742111122 799998888 8
Q ss_pred CCHHHHHHH
Q 046991 124 LTVEETLMC 132 (612)
Q Consensus 124 lTv~E~l~~ 132 (612)
+||.|++.+
T Consensus 89 ltv~e~l~~ 97 (158)
T 1htw_A 89 LADPEELEF 97 (158)
T ss_dssp CSCTTHHHH
T ss_pred CCcHHHHHH
Confidence 999999965
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.48 E-value=4.2e-14 Score=140.33 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=91.4
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC---ceeeEEEECCeeC-Chhh---hcccEEEEecCCCc
Q 046991 51 ILKDVS-CEARPGEITAIAGPSGAGKTTLLEILAG--KISSR---KVSGKLLVNDRPM-DAEH---FRRISGYVTQDDAL 120 (612)
Q Consensus 51 iL~~vs-~~i~~Ge~~aIlG~nGsGKTTLL~~L~G--~~~~~---~~~G~I~~~g~~~-~~~~---~~~~i~yv~Q~~~l 120 (612)
.|+.+- +-+++|++++|+||||||||||++.|++ ..++. ...|.+++++++. .... +.+.+++.+|
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---- 87 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS---- 87 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH----
Confidence 344432 5699999999999999999999999999 44320 1356677766542 1111 1111111111
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHH-HHHHHHHh--hCCCEE
Q 046991 121 FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRR-ASIGVDLV--HDPAVV 197 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqR-v~ia~~L~--~~p~ll 197 (612)
++++.+.+ .. ..+..+... +.-+.+++ .+|+++
T Consensus 88 -------------------------------~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~ll 123 (243)
T 1n0w_A 88 -------------------------------DVLDNVAY-------AR------AFNTDHQTQLLYQASAMMVESRYALL 123 (243)
T ss_dssp -------------------------------HHHHTEEE-------EE------CCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred -------------------------------HHhhCeEE-------Ee------cCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 11111110 11 234444332 23233333 589999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHHcCCcEEEEEccCCchH------------------HHhccCeE
Q 046991 198 LIDEPTSGLDSA-------S-----ALHVVTLLKSMVVNQGKTIILTIHQPGFR------------------ILELFDRL 247 (612)
Q Consensus 198 lLDEPtsgLD~~-------~-----~~~i~~~L~~l~~~~g~tii~~~H~~~~~------------------i~~~~D~v 247 (612)
++|||++.+|+. . ...+++.|++++++.|.|||+++|..... +...+|.+
T Consensus 124 iiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~v 203 (243)
T 1n0w_A 124 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR 203 (243)
T ss_dssp EEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEE
T ss_pred EEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEE
Confidence 999999999985 3 45677778888877799999999965421 22279999
Q ss_pred EEEcCC
Q 046991 248 VLLSNG 253 (612)
Q Consensus 248 ~lL~~G 253 (612)
++|++|
T Consensus 204 i~l~~~ 209 (243)
T 1n0w_A 204 LYLRKG 209 (243)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999865
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=1.5e-15 Score=165.38 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=106.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hh--hcccEEEEecCCCcCC
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EH--FRRISGYVTQDDALFP 122 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~--~~~~i~yv~Q~~~l~~ 122 (612)
-+++|+++++|++++|+|+||||||||+++|+|++++ .+|+|.++|.+... .. .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3689999999999999999999999999999999865 57999998776532 11 2567999999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh-hCC-CEEEEe
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV-HDP-AVVLID 200 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~-~~p-~lllLD 200 (612)
.+||++++.++..-.. . . -+++..|+.+.... +-.--+|++.+++++. ..| .++|..
T Consensus 361 ~~tV~e~l~~a~~~~~---D------v--VLIDTaGrl~~~~~----------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI---D------V--LIADTAGRLQNKSH----------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTC---S------E--EEECCCCSCCCHHH----------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCC---C------E--EEEeCCCccchhhh----------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8999999987642110 0 0 01222232221111 1122247888888664 457 466666
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 234 (612)
+||+|.|.. +.++.+.+..+.|.++.||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 688886554 3344554456889999999
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=3.2e-16 Score=148.85 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=91.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCeeCC------hhhhc-ccEE----EEecCCCcCCCCCHHHHH
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRPMD------AEHFR-RISG----YVTQDDALFPLLTVEETL 130 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~~~------~~~~~-~~i~----yv~Q~~~l~~~lTv~E~l 130 (612)
++++|+|+||||||||++.|+|++++. ...|+|.++|.++. .+.+| +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998762 12799999998732 23455 3566 888887655 111
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 046991 131 MCSALLRLTAGRRKQAASRVRGLLKE-LGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVV-------LIDEP 202 (612)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~ll-------lLDEP 202 (612)
. .. +....++++++. +. -.|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 ---------~-~~-~~~a~l~~~i~~~l~---g~dt~i~E-----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 ---------V-SE-EEGNDLDWIYERYLS---DYDLVITE-----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ---------C-CH-HHHTCHHHHHHHHTT---TCSEEEEE-----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ---------C-Ch-hhhhCHHHHHHhhCC---CCCEEEEC-----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 11 111235556665 43 36788873 69999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcCC
Q 046991 203 TSG---LDSASALHVVTLLKSMVVNQG 226 (612)
Q Consensus 203 tsg---LD~~~~~~i~~~L~~l~~~~g 226 (612)
..+ +|......+.+.+.+..++.|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 345566788888877666644
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=3.9e-15 Score=155.68 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=109.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh----h---hhcc--cEEEEecCCCcCCCCCHHHH
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA----E---HFRR--ISGYVTQDDALFPLLTVEET 129 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~---~~~~--~i~yv~Q~~~l~~~lTv~E~ 129 (612)
.++|++++|+||||||||||++.|+|++++ .+|+|.++|.+... + .+++ .+.+++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999999876 68999999998642 1 1222 45699999999999999999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 046991 130 LMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSA 209 (612)
Q Consensus 130 l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 209 (612)
+.++...... . .+++..|+.+..+..+. +|| .+++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~d---------~--vliDtaG~~~~~~~l~~------eL~-------~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGID---------V--VLIDTAGRSETNRNLMD------EMK-------KIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTCS---------E--EEEEECCSCCTTTCHHH------HHH-------HHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccch---------h--hHHhhccchhHHHHHHH------HHH-------HHHHHhcCCCCEEEEecHH-H----
Confidence 9865321100 0 01222333322222221 333 3888888888888888554 3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEccCCch--------HHHhccCeEEEEcCCeE
Q 046991 210 SALHVVTLLKSMVVNQGKTIILTIHQPGF--------RILELFDRLVLLSNGFV 255 (612)
Q Consensus 210 ~~~~i~~~L~~l~~~~g~tii~~~H~~~~--------~i~~~~D~v~lL~~G~i 255 (612)
.++++.++.+.++.+.|+|++||.... -.....-.|..+..|+-
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 355666677766678999999995421 01223345666666654
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=2.3e-16 Score=165.89 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=110.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChh-------hhcccEEEEecCCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE-------HFRRISGYVTQDDA 119 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~~~~i~yv~Q~~~ 119 (612)
+.+.+|+++|+++++|++++|+||||||||||+++|+|.+.+ .+|+|.+.|.+.... ..++.+++++|++.
T Consensus 40 ~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 40 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 446799999999999999999999999999999999999865 589999999876321 24567899999987
Q ss_pred cCCCCC------------HHHHHHHHH-----------------------------HccCCCCCHHHHH---HHHHHHHH
Q 046991 120 LFPLLT------------VEETLMCSA-----------------------------LLRLTAGRRKQAA---SRVRGLLK 155 (612)
Q Consensus 120 l~~~lT------------v~E~l~~~~-----------------------------~l~~~~~~~~~~~---~~v~~~l~ 155 (612)
++...+ ++|.+...- .+..+. ..++.+ +.+.+...
T Consensus 118 ~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 118 AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELAD 196 (337)
T ss_dssp EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCS
T ss_pred cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhcccc
Confidence 775321 233321100 000000 011100 01111211
Q ss_pred HcCCcccccccccCCCCCCccChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 046991 156 ELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVH------DPAVVLIDEPTSGLDSASALHVVTLLKSMVV 223 (612)
Q Consensus 156 ~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 223 (612)
.+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+.+.|.++..
T Consensus 197 ivvl-NK~Dl~-----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKADDG-----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCSTT-----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echhcc-----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 2222 112211 113689999999999999987 688877 999999999999999988753
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.40 E-value=9.7e-13 Score=140.05 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=66.2
Q ss_pred CccChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 174 CGISGGERRRA------SIGVDLVHD-PAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 174 ~~LSgGerqRv------~ia~~L~~~-p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
..+|||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++. + +.+||++||++. +...+|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGG--GGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHH--HHhhCCE
Confidence 48999999988 567888999 99999999999999999999999999874 3 468999999985 5789999
Q ss_pred EEEEc
Q 046991 247 LVLLS 251 (612)
Q Consensus 247 v~lL~ 251 (612)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=2.1e-14 Score=148.67 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=84.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE---CCeeCCh--hhhc-ccEEEEecCCCcC-----CCCCHH
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV---NDRPMDA--EHFR-RISGYVTQDDALF-----PLLTVE 127 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~---~g~~~~~--~~~~-~~i~yv~Q~~~l~-----~~lTv~ 127 (612)
+.+|++++|+||||||||||+|+|+ ..++ .+|+|.+ +|++.+. ...+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3579999999999999999999999 8766 6899999 8987653 2222 3689999998653 78899
Q ss_pred HHH--HHH----HHccCCC-CCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCccChHHHHHHHHHHH
Q 046991 128 ETL--MCS----ALLRLTA-GRRKQAASRVRGLLKELGLDH-VASSRIGGGSSNCGISGGERRRASIGVD 189 (612)
Q Consensus 128 E~l--~~~----~~l~~~~-~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~~LSgGerqRv~ia~~ 189 (612)
|++ .|. ..++... ...++...+++++++.++|.+ ..++.+. .|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~------~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK------IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH------HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 888 443 1011111 122233467899999999986 6777776 899988999999874
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=6.1e-14 Score=151.06 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=100.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHH
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLM 131 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 131 (612)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999852 12233221 12233455554430 0011111100
Q ss_pred HH--HHccCCCCCHHH--HHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046991 132 CS--ALLRLTAGRRKQ--AASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD 207 (612)
Q Consensus 132 ~~--~~l~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 207 (612)
+. +. ......... ..++++.++..++++ +..+. .+|+||+||+.+|++|+.+|.++++ +++|
T Consensus 215 li~~a~-~~~~L~~~fl~~~era~~lL~vvDls---~~~~~------~ls~g~~el~~la~aL~~~P~ILVl----NKlD 280 (416)
T 1udx_A 215 IIEGAS-EGKGLGLEFLRHIARTRVLLYVLDAA---DEPLK------TLETLRKEVGAYDPALLRRPSLVAL----NKVD 280 (416)
T ss_dssp CCCCGG-GSCCSCHHHHHHHTSSSEEEEEEETT---SCHHH------HHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred cccchh-hhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHH------HHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence 00 00 000001111 111223334444443 33443 7999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEc-cCCchHHHhccCeE
Q 046991 208 SASALHVVTLLKSMVVNQGKTIILTI-HQPGFRILELFDRL 247 (612)
Q Consensus 208 ~~~~~~i~~~L~~l~~~~g~tii~~~-H~~~~~i~~~~D~v 247 (612)
...+ ..++.+++..++.+.+++.+| |.-. .+.++++.+
T Consensus 281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~-gi~eL~~~i 319 (416)
T 1udx_A 281 LLEE-EAVKALADALAREGLAVLPVSALTGA-GLPALKEAL 319 (416)
T ss_dssp TSCH-HHHHHHHHHHHTTTSCEEECCTTTCT-THHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHhcCCeEEEEECCCcc-CHHHHHHHH
Confidence 9877 555555555555566666555 5443 466665544
No 135
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.34 E-value=4.1e-14 Score=145.57 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=88.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHH----
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSAL---- 135 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~---- 135 (612)
+++.+++|.||||||||||.+.|++.+.+ .| . . ++.+.+|+||+.+++. +.++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 47889999999999999999999999854 22 0 1 3456677999988875 88899887521
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCc--cc--ccccccCCCCCCccChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q 046991 136 LRLTAGRRKQAASRVRGLLKELGLD--HV--ASSRIGGGSSNCGISGGERRRASIG--VDLVHDPAVVLIDEPTSGLDSA 209 (612)
Q Consensus 136 l~~~~~~~~~~~~~v~~~l~~lgL~--~~--~~~~vg~~~~~~~LSgGerqRv~ia--~~L~~~p~lllLDEPtsgLD~~ 209 (612)
+...+.+.....+...+.++.+.-. .. ....+ ....+.+||||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~--p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVL--PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEE--CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceee--ccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 1111111112234556666666432 00 11111 122357999999999997 454 99999999999999985
Q ss_pred H
Q 046991 210 S 210 (612)
Q Consensus 210 ~ 210 (612)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=1.3e-13 Score=131.25 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=76.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHH
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSAL 135 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 135 (612)
++.+++|+.++|.||||+|||||+++|++...+ .+|. . +.| +++.|.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~~g~------~---------~~~----------~~~~~~~~~--- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE--KKGI------R---------GYF----------FDTKDLIFR--- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH--HSCC------C---------CCE----------EEHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH--HcCC------e---------EEE----------EEHHHHHHH---
Confidence 356778999999999999999999999998743 2331 0 111 123332211
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHH
Q 046991 136 LRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTS-GLDSASALHV 214 (612)
Q Consensus 136 l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts-gLD~~~~~~i 214 (612)
.......- ... -....+.+|++|+||||++ ++|+..+..+
T Consensus 82 --------------~~~~~~~~-----------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l 122 (180)
T 3ec2_A 82 --------------LKHLMDEG-----------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELI 122 (180)
T ss_dssp --------------HHHHHHHT-----------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHH
T ss_pred --------------HHHHhcCc-----------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHH
Confidence 00111100 010 1122345999999999995 9999999999
Q ss_pred HHHHHHHHHcCCcEEEEEccCCch
Q 046991 215 VTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 215 ~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
.+++.+..+ .|+++|++||.+..
T Consensus 123 ~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 123 SYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHH-TTCEEEEECCCCSC
T ss_pred HHHHHHHHH-cCCCEEEEcCCChh
Confidence 999988754 57899999998864
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.32 E-value=3.1e-15 Score=161.33 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=95.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhhcccEEEEe-----
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHFRRISGYVT----- 115 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~----- 115 (612)
.+.+|+++ + .++|++++|+|||||||||||++|+|.+++ .+|+|.++|.++.. ...++.+++.+
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 34578887 4 489999999999999999999999999876 58999999887632 12334455655
Q ss_pred ----cCCCc--CCC----CCHHHHHHHHHHcc-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHH
Q 046991 116 ----QDDAL--FPL----LTVEETLMCSALLR-----LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGE 180 (612)
Q Consensus 116 ----Q~~~l--~~~----lTv~E~l~~~~~l~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGe 180 (612)
|++.. ++. .|+.+++.++..-. ....+. .+ +.+.|..+|+.+.. ... .|||||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~-~i~rL~~lgl~~~~--~~~------~LSgg~ 298 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VG-AVTRLRDMGIEPFL--ISS------SLLGVL 298 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HH-HHHHHHHHTCCHHH--HHH------HEEEEE
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HH-HHHHHHHcCCcHHH--HHH------HHHHHH
Confidence 88765 344 68999988753210 011111 12 22346778987653 443 799999
Q ss_pred HHHHHHHHHHhhCCCEEE
Q 046991 181 RRRASIGVDLVHDPAVVL 198 (612)
Q Consensus 181 rqRv~ia~~L~~~p~lll 198 (612)
+|| ||++|+.+|++..
T Consensus 299 ~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 299 AQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEE--EEEEECTTTCEEE
T ss_pred HHH--hhhhhcCCCCccC
Confidence 999 9999999999875
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.31 E-value=6e-12 Score=134.92 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=93.2
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCC---ceeeEEEECCeeC-Chhh---hcccEEEEecCCCc
Q 046991 51 ILKDV-SCEARPGEITAIAGPSGAGKTTLLEIL--AGKISSR---KVSGKLLVNDRPM-DAEH---FRRISGYVTQDDAL 120 (612)
Q Consensus 51 iL~~v-s~~i~~Ge~~aIlG~nGsGKTTLL~~L--~G~~~~~---~~~G~I~~~g~~~-~~~~---~~~~i~yv~Q~~~l 120 (612)
-|+.+ .+-+++|++++|+||||||||||++.| .+..++. ...+.++++++.. .... +.+.+++.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34442 367999999999999999999999944 5665431 1234666666542 1110 1111111111
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccCh-HHHHHHHHHHHHh--hCCCEE
Q 046991 121 FPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISG-GERRRASIGVDLV--HDPAVV 197 (612)
Q Consensus 121 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSg-GerqRv~ia~~L~--~~p~ll 197 (612)
++++.+ .+. +..++ .+.+.+.-+.+++ .+|+++
T Consensus 242 -------------------------------~vleni--------~~~-----~~~~~~~~~~~l~~~~~~l~~~~~~ll 277 (400)
T 3lda_A 242 -------------------------------DALNNV--------AYA-----RAYNADHQLRLLDAAAQMMSESRFSLI 277 (400)
T ss_dssp -------------------------------HHHHTE--------EEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred -------------------------------hHhhcE--------EEe-----ccCChHHHHHHHHHHHHHHHhcCCceE
Confidence 111111 111 01121 1223333333333 469999
Q ss_pred EEeCCCCCCCHHHH------------HHHHHHHHHHHHcCCcEEEEEccCCc------------------hHHHhccCeE
Q 046991 198 LIDEPTSGLDSASA------------LHVVTLLKSMVVNQGKTIILTIHQPG------------------FRILELFDRL 247 (612)
Q Consensus 198 lLDEPtsgLD~~~~------------~~i~~~L~~l~~~~g~tii~~~H~~~------------------~~i~~~~D~v 247 (612)
++|||++.+|+... ..+++.|++++++.|.|||+++|... ..+...+|.+
T Consensus 278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~v 357 (400)
T 3lda_A 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTR 357 (400)
T ss_dssp EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEE
T ss_pred EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceE
Confidence 99999999997543 67889999999888999999999821 1246778999
Q ss_pred EEEcCCe
Q 046991 248 VLLSNGF 254 (612)
Q Consensus 248 ~lL~~G~ 254 (612)
+.|++++
T Consensus 358 l~L~~~~ 364 (400)
T 3lda_A 358 LGFKKGK 364 (400)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 9998763
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.31 E-value=1.2e-12 Score=121.37 Aligned_cols=95 Identities=18% Similarity=0.367 Sum_probs=70.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee--EEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG--KLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G--~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
.+|+++ +|+.++|+||||+|||||+++|+|...+ +| .+++++.+.. ..
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~-----------------~~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMP-----------------LT----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSC-----------------CC-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhh-----------------HH-----
Confidence 466676 8999999999999999999999998754 34 3333332211 00
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD 207 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 207 (612)
+++.+|++|++|||++ +|
T Consensus 79 -------------------------------------------------------------~~~~~~~lLilDE~~~-~~ 96 (149)
T 2kjq_A 79 -------------------------------------------------------------DAAFEAEYLAVDQVEK-LG 96 (149)
T ss_dssp -------------------------------------------------------------GGGGGCSEEEEESTTC-CC
T ss_pred -------------------------------------------------------------HHHhCCCEEEEeCccc-cC
Confidence 1245799999999998 66
Q ss_pred HHHHHHHHHHHHHHHHcCCcE-EEEEccCCc
Q 046991 208 SASALHVVTLLKSMVVNQGKT-IILTIHQPG 237 (612)
Q Consensus 208 ~~~~~~i~~~L~~l~~~~g~t-ii~~~H~~~ 237 (612)
...+..+.+++.++.++ |++ +|+++|.+.
T Consensus 97 ~~~~~~l~~li~~~~~~-g~~~iiits~~~p 126 (149)
T 2kjq_A 97 NEEQALLFSIFNRFRNS-GKGFLLLGSEYTP 126 (149)
T ss_dssp SHHHHHHHHHHHHHHHH-TCCEEEEEESSCT
T ss_pred hHHHHHHHHHHHHHHHc-CCcEEEEECCCCH
Confidence 65688899999988654 677 888988653
No 140
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.31 E-value=1.1e-14 Score=152.99 Aligned_cols=171 Identities=23% Similarity=0.195 Sum_probs=113.5
Q ss_pred ccCccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC--ceeeEEEECCeeCCh--hh-hcccEE
Q 046991 45 KKDPKFILKDVSCEARPG-------EITAIAGPSGAGKTTLLEILAGKISSR--KVSGKLLVNDRPMDA--EH-FRRISG 112 (612)
Q Consensus 45 ~~~~~~iL~~vs~~i~~G-------e~~aIlG~nGsGKTTLL~~L~G~~~~~--~~~G~I~~~g~~~~~--~~-~~~~i~ 112 (612)
..+...+++++++.+++| +.++|.||||+|||||+++|+|..... +.+|++..++.++.. .. .++.+.
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~ 106 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEE
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEE
Confidence 345667899999999887 899999999999999999999987321 256777666554321 11 245799
Q ss_pred EEecCCCcCCCCCHHHHHHHHHHccCCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHH
Q 046991 113 YVTQDDALFPLLTVEETLMCSALLRLTAG--RRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDL 190 (612)
Q Consensus 113 yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L 190 (612)
++.|.+.+.+ ++.|++........... ......+.++..++.+++.. +++.++ .||+|+|||+.++
T Consensus 107 ~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~------~Ls~~l~sR~~l~--- 174 (334)
T 1in4_A 107 FIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG------LLSSPLRSRFGII--- 174 (334)
T ss_dssp EEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG------GSCHHHHTTCSEE---
T ss_pred EEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc------cCCHHHHHhcCce---
Confidence 9999887766 78888854432211000 01222344566666677755 666665 8999999998654
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCe
Q 046991 191 VHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDR 246 (612)
Q Consensus 191 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~ 246 (612)
.+||+.+..++.++|++.++..+ +.|+++ .+..++++
T Consensus 175 -------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 -------------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp -------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred -------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 78888889999999999876655 357765 35555553
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=2.3e-12 Score=135.36 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=76.1
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCceeeEEEECCeeCCh-hhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCCC
Q 046991 65 TAIAGPSGAGKTTLLEILAG-KISSRKVSGKLLVNDRPMDA-EHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAGR 142 (612)
Q Consensus 65 ~aIlG~nGsGKTTLL~~L~G-~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 142 (612)
+.|.||||+|||||+++|+| +..+ ..|++.++|.+... ...+..+++++|.+.+.-..+ +. . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~--~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM-------G--NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC---------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--hc-------C--Ccc
Confidence 89999999999999999999 6654 57999999877542 223466888888765421111 00 0 001
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046991 143 RKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMV 222 (612)
Q Consensus 143 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 222 (612)
.. .+++.++.+.-....+... .+|| +..+|+++++|||++ ||+.++..+.+.+++..
T Consensus 106 ~~----~~~~~i~~~~~~~~~~~~~-------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 106 RI----VIQELLKEVAQMEQVDFQD-------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred hH----HHHHHHHHHHHhccccccc-------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 11 2333333332111111111 3566 788999999999999 99999999999999863
Q ss_pred HcCCcEEEEEccCCch
Q 046991 223 VNQGKTIILTIHQPGF 238 (612)
Q Consensus 223 ~~~g~tii~~~H~~~~ 238 (612)
.+.++|+++|+++.
T Consensus 163 --~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 --KNIRLIMVCDSMSP 176 (354)
T ss_dssp --TTEEEEEEESCSCS
T ss_pred --CCCEEEEEeCCHHH
Confidence 46899999999863
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=7.9e-15 Score=162.14 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=108.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee-CChhhhcccEEEEecCCC--------
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP-MDAEHFRRISGYVTQDDA-------- 119 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~Q~~~-------- 119 (612)
..+++++++.+++|+.++|+|||||||||||++|+|++++ .+|.|+++|.+ +... -...++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHH
Confidence 4578999999999999999999999999999999999976 68999998865 2211 1234555555432
Q ss_pred --------------cCCCCCHHHHHHHHHHccCCCCC-HHHHHHHHHHHHHHcCC-----ccc----ccccccCCCCCCc
Q 046991 120 --------------LFPLLTVEETLMCSALLRLTAGR-RKQAASRVRGLLKELGL-----DHV----ASSRIGGGSSNCG 175 (612)
Q Consensus 120 --------------l~~~lTv~E~l~~~~~l~~~~~~-~~~~~~~v~~~l~~lgL-----~~~----~~~~vg~~~~~~~ 175 (612)
+++.++..|++.+.......... .......+.++++++.. ... .+..+ .....
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi---~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL---VQTMW 400 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE---EEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE---EEEEE
Confidence 22345555554432222111000 00000112233333322 211 11000 01125
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEE--EccCCchHHHhccC
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIIL--TIHQPGFRILELFD 245 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~--~~H~~~~~i~~~~D 245 (612)
+|+||+||..++. + | |+|||+.....+.+.+.++.+ .++|+++ ++|+++ ++.+.++
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHH-HHHHHHT
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHH-HHHHHcC
Confidence 7999999877641 1 7 999999888777777777753 4778875 899987 4666654
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.22 E-value=1.1e-14 Score=155.62 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=119.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----------CCceeeEEEECCeeCCh--h--hhccc---EEEEecCCCc
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKIS----------SRKVSGKLLVNDRPMDA--E--HFRRI---SGYVTQDDAL 120 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~----------~~~~~G~I~~~g~~~~~--~--~~~~~---i~yv~Q~~~l 120 (612)
.+++|+.++|+|+||||||||+|+|+|... ..+..|.|.++|..+.. + .-++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 01478999998854321 1 11122 3477888888
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCC--CE
Q 046991 121 FPLLTVEETL--MCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDP--AV 196 (612)
Q Consensus 121 ~~~lTv~E~l--~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p--~l 196 (612)
.+..+..|++ .|.+.++. ++.++..++..+ +..+ ..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~-----------~d~il~Vvd~~~--d~~i------~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA-----------VDAIYQVVRAFD--DAEI------IHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT-----------CSEEEEEEECCC--TTCS------SCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH-----------HHHHHHHHhccc--ccee------eeecccc------------Ccchhh
Confidence 8888877766 33332221 111111111111 2222 2456553 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCcEEEEEccCCchHHHhccCeEE-EEcCC-eEEEecChhh
Q 046991 197 VLIDEPTSGLDSASALHVVTLLKSM-VVNQGKTIILTIHQPGFRILELFDRLV-LLSNG-FVVHNGTLNH 263 (612)
Q Consensus 197 llLDEPtsgLD~~~~~~i~~~L~~l-~~~~g~tii~~~H~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~~ 263 (612)
+++|||+.++|+......++.++.. ++ .|.|++ +|+.. ++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999988 54 466754 99987 5899999999 99999 9888776544
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.20 E-value=3.8e-15 Score=144.71 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=85.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------ceeeEEEECCeeC---ChhhhcccEEEEecCCCcCCCCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSR-----------KVSGKLLVNDRPM---DAEHFRRISGYVTQDDALFPLLT 125 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-----------~~~G~I~~~g~~~---~~~~~~~~i~yv~Q~~~l~~~lT 125 (612)
++|++++|+||||||||||+++|+|+.+.. +..|+ ++|.++ +...+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 589999999999999999999999986410 23455 355433 223343332 2333222 123
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHH----HHHHHH-HHhhCCCEEEEe
Q 046991 126 VEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERR----RASIGV-DLVHDPAVVLID 200 (612)
Q Consensus 126 v~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerq----Rv~ia~-~L~~~p~lllLD 200 (612)
+.+|+ ++ .+. +.++++++.-. ....+..+ .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g-------~~~----~~i~~~~~~~~-~~~~~~~~----------~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG-------TSK----EAVRAVQAMNR-ICVLDVDL----------QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE-------EEH----HHHHHHHHTTC-EEEEECCH----------HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC-------CCH----HHHHHHHHcCC-cEEEECCH----------HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33333 11 122 22334443211 11111111 01110 12 445 677888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcC
Q 046991 201 EPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSN 252 (612)
Q Consensus 201 EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~ 252 (612)
|||+++|..+...|.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999988887543 2345621 57899887753
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.19 E-value=6.2e-13 Score=137.57 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=70.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE---CCeeCChh--hh-cccEEEEecCCC------------
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV---NDRPMDAE--HF-RRISGYVTQDDA------------ 119 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~---~g~~~~~~--~~-~~~i~yv~Q~~~------------ 119 (612)
++.+|++++|+||||||||||+|+|+|+.++ .+|+|.+ +|++++.. .. .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4557999999999999999999999999977 7899999 89876531 12 135899999974
Q ss_pred ----cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCc-cccccccc
Q 046991 120 ----LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLD-HVASSRIG 168 (612)
Q Consensus 120 ----l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 168 (612)
++|.+|+ ||+.|.. +. ...+...++.++++.+||. +..+..+.
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~----~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN----HVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC----SSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc----CCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 5889999 9998752 11 1123346789999999995 66677665
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.17 E-value=1.3e-14 Score=148.31 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=100.6
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCC-CcCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDD-ALFP 122 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~-~l~~ 122 (612)
....+++++++.+++| ++|.||||||||||+++|+|...+ |.|.++|.++.. ....+.+++++|+. ...|
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 4566899999999999 999999999999999999999754 789999987632 22345577788874 4556
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 123 LLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 202 (612)
.+++.|++......+ ... ... .+.+..++.+. .|||||+||+.+++++..+|++| |||
T Consensus 105 ~i~~~Deid~~~~~r----~~~----~~~------~~~~~~~~~l~------~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR----SDR----ETG------ASVRVVNQLLT------EMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC-----------------------CTTHHHHHHH------HHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc----CCC----cch------HHHHHHHHHHH------hhhcccccCCEEEEeecCChhhC--CHh
Confidence 667777765421100 000 000 12334455554 79999999999999999999975 988
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 046991 203 TS------------GLDSASALHVVTLL 218 (612)
Q Consensus 203 ts------------gLD~~~~~~i~~~L 218 (612)
+. --|...+.+|++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23566666665543
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=1.9e-12 Score=133.84 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=69.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEE---CCeeCCh-hhh-cccEEEEecCCCcCC----CCCHH
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLV---NDRPMDA-EHF-RRISGYVTQDDALFP----LLTVE 127 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~---~g~~~~~-~~~-~~~i~yv~Q~~~l~~----~lTv~ 127 (612)
+++.+|++++|+||||+|||||+|+|+|..++ .+|+|.+ +|+..+. ..+ +..++|++|++.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45678999999999999999999999999876 6899998 8877643 122 222799999987765 6899
Q ss_pred HHHH--HHH------HccCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHH
Q 046991 128 ETLM--CSA------LLRLTA-GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRR 183 (612)
Q Consensus 128 E~l~--~~~------~l~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqR 183 (612)
|++. |.. .++... ...++...+++++++.++|.+....... .++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 8883 321 112111 1122334578999999999875443333 577787763
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.16 E-value=1e-11 Score=135.72 Aligned_cols=182 Identities=13% Similarity=0.076 Sum_probs=118.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee-EEEECCeeCChhhhcccE-EEEecCCCcCCCCCH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG-KLLVNDRPMDAEHFRRIS-GYVTQDDALFPLLTV 126 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G-~I~~~g~~~~~~~~~~~i-~yv~Q~~~l~~~lTv 126 (612)
...|+++.+-+++|+++.|.|+||+|||||+..+++...+ ..| .|.+.+.+.+..++.+++ +... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 4578888888999999999999999999999999987632 123 455544443332222110 0000 0001
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV--HDPAVVLIDEPTS 204 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~--~~p~lllLDEPts 204 (612)
+.+ +...... +..+++.+.++.++..+..-...+ ++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~g~l~~-~~~~~~~~a~~~l~~~~l~i~d~~------~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RTGKLTP-EDWGKLTMAMGSLSNAGIYIDDTP------SIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HTSCCCH-HHHHHHHHHHHHHHSSCEEEECCT------TCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hcCCCCH-HHHHHHHHHHHHHhcCCEEEECCC------CCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 111 1111122 334456666666654433222122 68999987 5666666 6899999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHHcCCcEEEEEcc---------C--Cch-------HHHhccCeEEEEcCCeE
Q 046991 205 GLD--------SASALHVVTLLKSMVVNQGKTIILTIH---------Q--PGF-------RILELFDRLVLLSNGFV 255 (612)
Q Consensus 205 gLD--------~~~~~~i~~~L~~l~~~~g~tii~~~H---------~--~~~-------~i~~~~D~v~lL~~G~i 255 (612)
..+ ......+.+.|+.+|++.|.+||+++| + |.. .+.+.+|.|++|+.++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 774 334477888899999888999999999 3 431 36788999999987654
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.16 E-value=2.6e-13 Score=132.52 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=90.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHcc
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLR 137 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 137 (612)
.++|++++|+||||||||||+++|+|++++. ...|.|.++|...... ..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhcccccCC
Confidence 5799999999999999999999999998641 1245555555433221 111110000000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 046991 138 LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIG-VDLVHDPAVVLIDEPTSGLDSASALHVVT 216 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia-~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 216 (612)
.+.. .......+.++.+...+..+..+. .....+|+||+||+++| ++++.++.++++|||..
T Consensus 79 ~~~~---~~~~~~~~~l~~l~~~~~i~~p~~--d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------ 141 (208)
T 3c8u_A 79 APET---FDFEGFQRLCHALKHQERVIYPLF--DRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------ 141 (208)
T ss_dssp SGGG---BCHHHHHHHHHHHHHCSCEEEEEE--ETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG------------
T ss_pred CCch---hhHHHHHHHHHHHhcCCceecccC--CccccCCCCCceEEcCCCcEEEECCceeccCCchh------------
Confidence 0000 001112223332211111112221 11125899999999998 88888888888999841
Q ss_pred HHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCeEEEecChhhHHHHH
Q 046991 217 LLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGFVVHNGTLNHLEERL 268 (612)
Q Consensus 217 ~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 268 (612)
.++.... -.++.+.++.+..+.+...|. +..|+ +.+++.+..
T Consensus 142 --~~l~~~~-d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 --RDLTAIW-DVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp --GGGGGTC-SEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred --HHHHHhc-CEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1112222 367778887765566677662 34564 455555443
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=1.4e-12 Score=135.34 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=70.0
Q ss_pred ceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCceeeEEEE---CCeeCChh
Q 046991 50 FILKDVSCEA-------------------RPGEITAIAGPSGAGKTTLLEILAGKIS--SRKVSGKLLV---NDRPMDAE 105 (612)
Q Consensus 50 ~iL~~vs~~i-------------------~~Ge~~aIlG~nGsGKTTLL~~L~G~~~--~~~~~G~I~~---~g~~~~~~ 105 (612)
++++++++.+ ++|+++||+||||||||||+++|+|++. + .+|+|.+ ||.....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~--~~G~i~vi~~d~~~~~~- 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP--EHRRVELITTDGFLHPN- 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST--TCCCEEEEEGGGGBCCH-
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEecCCccCcH-
Confidence 5888999887 9999999999999999999999999876 5 6899999 8877543
Q ss_pred hhcccEEEEecCCCcCCCCCHHHHHHHHHHcc
Q 046991 106 HFRRISGYVTQDDALFPLLTVEETLMCSALLR 137 (612)
Q Consensus 106 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 137 (612)
..++.++++ |+..+++.+|+.+++.+...++
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 234567888 8777888899999998765543
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.10 E-value=7.3e-12 Score=124.28 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=48.4
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH-------HHhccCeEEEEcC
Q 046991 192 HDPAVVLIDEPTSGL--DSASALHVVTLLKSMVVNQGKTIILTIHQPGFR-------ILELFDRLVLLSN 252 (612)
Q Consensus 192 ~~p~lllLDEPtsgL--D~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~-------i~~~~D~v~lL~~ 252 (612)
.+|+++++|||++.+ |+....+.+..|.+++++.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 665566777777777777899999999987631 4578899999964
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.02 E-value=1.6e-10 Score=119.61 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=81.3
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHH
Q 046991 55 VSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSA 134 (612)
Q Consensus 55 vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 134 (612)
+++..++|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+..... ..|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~~-------------------a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAA-------------------AIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHH-------------------HHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccHH-------------------HHH------
Confidence 4556789999999999999999999999999864 4677877765532100 011
Q ss_pred HccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 046991 135 LLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRA---SIGVDLVHDPAVVLIDEPTSGLDSASA 211 (612)
Q Consensus 135 ~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv---~ia~~L~~~p~lllLDEPtsgLD~~~~ 211 (612)
....+.+.+|+.. +. ..|||+.+++ ++++++..+|+++++|||.. ....
T Consensus 150 --------------qL~~~~~~~gl~~-----~~------~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 --------------QLKIWGERVGATV-----IS------HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp --------------HHHHHHHHHTCEE-----EC------CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred --------------HHHHHHHHcCCcE-----Ee------cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1233445566653 22 4689999999 89999999999999999974 3445
Q ss_pred HHHHHHHHHHH
Q 046991 212 LHVVTLLKSMV 222 (612)
Q Consensus 212 ~~i~~~L~~l~ 222 (612)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.98 E-value=9.2e-14 Score=137.78 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=57.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILA-GKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~-G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
..+..+++|+++++|++++|+||||||||||+++|+ |+.++ ..+.+.+...+.... ....++|.+++...++.+++
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKG-EKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTT-CCBTTTBEECCHHHHHHHHH
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCcc-ccCCCeEEEecHHHhhhhhh
Confidence 355789999999999999999999999999999999 99743 211111111111111 11233466665444433333
Q ss_pred HHHHHHHHHcc--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHH-HHH-HHHhhCCCEEEEeCC
Q 046991 127 EETLMCSALLR--LTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRA-SIG-VDLVHDPAVVLIDEP 202 (612)
Q Consensus 127 ~E~l~~~~~l~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv-~ia-~~L~~~p~lllLDEP 202 (612)
.+++....... ....+. +.+++.++. |-.-..+..+. + ...-+++. .-+ ..++..|+...+||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~vild~~~~------g-~~~~~~~~~~~~~~v~v~~~~~~~l~~R 157 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPR----KNLEDNVDK-GVSTLLVIDWQ------G-AFKFMEMMREHVVSIFIMPPSMEELRRR 157 (231)
T ss_dssp TTCEEEEEEETTEEEEEEC----TTHHHHHHH-TCEEEEECCHH------H-HHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred cCceehhhhhccccCCCCH----HHHHHHHHc-CCeEEEEcCHH------H-HHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence 33222100000 000011 123333433 11111111111 0 11123333 111 233567777788899
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 046991 203 TSGLDSASALHVVTLLKSMV 222 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~ 222 (612)
+...|..+...+.+.|++..
T Consensus 158 l~~R~~~~~~~i~~rl~~~~ 177 (231)
T 3lnc_A 158 LCGRRADDSEVVEARLKGAA 177 (231)
T ss_dssp --------------CHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH
Confidence 99998888777776666543
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.96 E-value=2e-09 Score=110.92 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=84.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHH
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMC 132 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 132 (612)
++++++ +|++++++|+||+||||++..|+|...+ ..|+|.+.+.+....... +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~~-------------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAR-------------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHHH-------------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhHH-------------------HHH--
Confidence 678887 9999999999999999999999999864 468888877665321100 001
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 046991 133 SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP-TSGLDSASA 211 (612)
Q Consensus 133 ~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP-tsgLD~~~~ 211 (612)
..+.+..|+....... .-.-.+.+|.+++.+...+++++++||| +.++|....
T Consensus 146 ------------------~~~~~~~~l~~~~~~~--------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVMD--------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp ------------------HHHHHHHTCCEEECCT--------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred ------------------HHhcccCCeEEEEcCC--------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 0112334554321100 1234456788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 046991 212 LHVVTLLKSM 221 (612)
Q Consensus 212 ~~i~~~L~~l 221 (612)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8888877765
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.92 E-value=1.2e-09 Score=115.07 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=91.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 51 ILKDVS--CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
-|+.+- +-+++|+++.|.||||||||||+..++..... ..| .+.|+.-+..+-+
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~----------------~vlyi~~E~~~~~------ 103 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA--AGG----------------IAAFIDAEHALDP------ 103 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTC----------------CEEEEESSCCCCH------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCC----------------eEEEEECCCCcCH------
Confidence 344433 37899999999999999999998888765421 111 2344443321110
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHD--PAVVLIDEPTSGL 206 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~--p~lllLDEPtsgL 206 (612)
. .+ +.+|+.. .+-.+- . ..+. .+-+.++++++.+ |+++++|||++.+
T Consensus 104 -~-~a---------------------~~lG~~~-~~l~i~-~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 104 -E-YA---------------------KKLGVDT-DSLLVS-Q----PDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp -H-HH---------------------HHTTCCG-GGCEEE-C----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred -H-HH---------------------HHcCCCH-HHeEEe-c----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 0 01 1122211 001111 0 1232 2345677778754 9999999999998
Q ss_pred ----------CH---HHHHHHHHHHHHH---HHcCCcEEEEEccCCch---------------HHHhccCeEEEEcCCeE
Q 046991 207 ----------DS---ASALHVVTLLKSM---VVNQGKTIILTIHQPGF---------------RILELFDRLVLLSNGFV 255 (612)
Q Consensus 207 ----------D~---~~~~~i~~~L~~l---~~~~g~tii~~~H~~~~---------------~i~~~~D~v~lL~~G~i 255 (612)
|+ ..+..+.+.++++ +++.|.|||+++|..+. .+..++|.++.++++++
T Consensus 153 ~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 153 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred chhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 33 2222344444444 46678999999996531 25578999999988776
Q ss_pred EEecC
Q 046991 256 VHNGT 260 (612)
Q Consensus 256 v~~G~ 260 (612)
+..|+
T Consensus 233 ~k~g~ 237 (349)
T 2zr9_A 233 LKDGT 237 (349)
T ss_dssp ECSSS
T ss_pred eecCc
Confidence 65554
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.92 E-value=6e-11 Score=130.38 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=100.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAG--KISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLM 131 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G--~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 131 (612)
.+++.+.++..++|.|++||||||+++.|.. +... ..|++.+.+.+.+...+... ..-+++.. +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~~----~~lPhl~~--~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSVY----EGIPHLLT--EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGGG----TTCTTBSS--SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhhh----ccCCcccc--eeecCHH
Confidence 4788889999999999999999999999875 3332 34666665555432111110 00011111 1112221
Q ss_pred HHH-HccCCCCCHHHHHHHHHHHHHHcCCccccc--ccccCCCCCCccChHHHHHH----------HHHHHHhhCCC-EE
Q 046991 132 CSA-LLRLTAGRRKQAASRVRGLLKELGLDHVAS--SRIGGGSSNCGISGGERRRA----------SIGVDLVHDPA-VV 197 (612)
Q Consensus 132 ~~~-~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~vg~~~~~~~LSgGerqRv----------~ia~~L~~~p~-ll 197 (612)
.+. .++. ..++.++| .++++..|+.+..+ .++. ..+|+||+||. .+++++...|. ++
T Consensus 231 ~a~~~L~~---~~~EmerR-~~ll~~~Gv~~i~~yn~~~~-----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALRW---CVNEMERR-YKLMSALGVRNLAGYNEKIA-----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHH---HHHHHHHH-HHHHHHTTCSSHHHHHHHHH-----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHH---HHHHHHHH-HHHHHHcCCccHHHHHHHHH-----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111 1110 13445555 47889999876543 2222 15789988752 35566777898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH---HHcCCcEEEEEccCCc
Q 046991 198 LIDEPTSGLDSASALHVVTLLKSM---VVNQGKTIILTIHQPG 237 (612)
Q Consensus 198 lLDEPtsgLD~~~~~~i~~~L~~l---~~~~g~tii~~~H~~~ 237 (612)
++||++.-+|.. ...+.+.+.++ .++.|.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 34455555544 4455789999999998
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.89 E-value=1.6e-09 Score=111.61 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=89.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLT 139 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 139 (612)
++|++++++|||||||||+++.|++...+ .+| +.+.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 57999999999999999999999999853 235 24666666652 235555554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 046991 140 AGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLK 219 (612)
Q Consensus 140 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 219 (612)
+..|+... . ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ---------------~~~gl~~~----~-------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ---------------ELLQAPLE----V-------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ---------------TTTTCCCC----B-------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ---------------HhcCCCeE----e-------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 12233211 1 1122 23345555 45999999999 99999876655554443
Q ss_pred HHH--HcCCcEEEE-EccCCchHHHhccCeEEEEcCCeEEEe
Q 046991 220 SMV--VNQGKTIIL-TIHQPGFRILELFDRLVLLSNGFVVHN 258 (612)
Q Consensus 220 ~l~--~~~g~tii~-~~H~~~~~i~~~~D~v~lL~~G~iv~~ 258 (612)
-+. ...+.++++ ++|+.. ++.+.+|++..+..+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 332 112334444 488875 57788887766666777754
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.88 E-value=1.8e-12 Score=132.25 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=85.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCC-cCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDA-LFP 122 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~ 122 (612)
....+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...++.+++++|+.. ..+
T Consensus 60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3456889999999999 99999999999999999999874 5889998865421 122344667777753 566
Q ss_pred CCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCE
Q 046991 123 LLTVEETLMCSALLRLTA--GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAV 196 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~l 196 (612)
.+++.|++......+... ...++..+.+.+++ . .|||||+||+.+++++..+|++
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------V------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHH-------------H------HHTTCCTTCCEEEEEEESCTTS
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------H------HHhCCCCCCCEEEEEecCCchh
Confidence 778888885432211100 01112222333322 2 6899999999999999999976
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.87 E-value=4.2e-11 Score=135.39 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=102.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCC-------
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDA------- 119 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~------- 119 (612)
+...+++++++.+++|+.++|+||||+|||||+++|++..++. ..|.+.+++.+.+. ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 5677899999999999999999999999999999999999762 34889988876542 3456888887531
Q ss_pred ---------------cCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHH
Q 046991 120 ---------------LFPLLTVEETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRA 184 (612)
Q Consensus 120 ---------------l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv 184 (612)
.+..+++.+|+.....-..+. + ...+.....-+.+|.-+......| ++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~-~--~v~~~~~~~~~L~G~~~~~~~~~g------~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA-P--FIDATGAHAGALLGDVRHDPFQSG------GLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSC-C--EEECTTCCHHHHHCEECCCCC----------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCC-C--EEEcCCCCHHhcCceEEechhhcC------Cccccccccc
Confidence 111222222221000000000 0 000000001112222111111112 7999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046991 185 SIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKS 220 (612)
Q Consensus 185 ~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 220 (612)
..+.....++.+||+||... |++..+..+.+.|++
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899998888888864
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.86 E-value=1.2e-10 Score=112.35 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=48.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCCcCCCCCHHHHH
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDALFPLLTVEETL 130 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l 130 (612)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...++.++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999963 35555544322 22355689999988776666665544
No 161
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.86 E-value=4e-10 Score=122.99 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=48.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD 103 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~ 103 (612)
..+|+++|+++++ |+++|+|||||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 4579999999999 99999999999999999999999977 7899999998764
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.83 E-value=3.1e-12 Score=128.44 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCC-cCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDA-LFP 122 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~ 122 (612)
....+++++++.+++| ++|.||||+|||||+++|++... .|.|.++|.++.. ...++.+++++|+.. ..+
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3456899999999999 99999999999999999999874 5889998865421 122344566777643 456
Q ss_pred CCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEe
Q 046991 123 LLTVEETLMCSALLRLTA--GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLID 200 (612)
Q Consensus 123 ~lTv~E~l~~~~~l~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLD 200 (612)
.+++.|++......+... ...++..+.+.+++ . .|||||+||+.+++++..+|++ +|
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~------~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------V------EMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHH-------------H------HHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------H------HHhCCCCCCCEEEEEccCCchh--CC
Confidence 677777774332111100 01112222333332 2 5899999999999999999986 56
Q ss_pred CC
Q 046991 201 EP 202 (612)
Q Consensus 201 EP 202 (612)
++
T Consensus 169 ~~ 170 (254)
T 1ixz_A 169 PA 170 (254)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.80 E-value=6.6e-10 Score=106.40 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=76.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---------ceeeEEEECCeeCCh-----hhhcccEEEEecCCCc-CCCCCHHH
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISSR---------KVSGKLLVNDRPMDA-----EHFRRISGYVTQDDAL-FPLLTVEE 128 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~~---------~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l-~~~lTv~E 128 (612)
.++|+|+||||||||++.++|...+. ..+|+|.++|+++.. ....+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999987531 147999999976421 0011111222221000 00011111
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHH---HcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLK---ELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSG 205 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 205 (612)
... . ...+.+..+++ ...-.+..--.++ + ...|..-..++..+|++++.+|+++++| ||+
T Consensus 111 ~~~-----------~-~s~~~~~~~~~~~~~~~~~~~~i~~v~-n--K~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAK-----------H-LTYENVERWLKELRDHADSNIVIMLVG-N--KSDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTC-----------H-HHHHTHHHHHHHHHHHSCTTCEEEEEE-E--CGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcC-----------H-HHHHHHHHHHHHHHHhcCCCCcEEEEE-E--CcccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 100 0 00011111111 1110000000111 0 0124333334578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 046991 206 LDSASALHVVTLLKSM 221 (612)
Q Consensus 206 LD~~~~~~i~~~L~~l 221 (612)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.76 E-value=3.3e-09 Score=111.77 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=93.5
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE-EECCeeCChhhhcccEEEEecCCCcCCCCCH
Q 046991 50 FILKDVS--CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL-LVNDRPMDAEHFRRISGYVTQDDALFPLLTV 126 (612)
Q Consensus 50 ~iL~~vs--~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I-~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 126 (612)
.-|+.+- +-+++|+++.|.||||||||||+..+++...+ ..|.+ +++++......+.+++|+.+|+..+....++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3455543 36899999999999999999999999987643 23544 5666543322333445655555444334455
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC-CccCh--HHHHHHHHHHHHhhCCCEEEEeCC
Q 046991 127 EETLMCSALLRLTAGRRKQAASRVRGLLKELGLDH-VASSRIGGGSSN-CGISG--GERRRASIGVDLVHDPAVVLIDEP 202 (612)
Q Consensus 127 ~E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~-~~LSg--GerqRv~ia~~L~~~p~lllLDEP 202 (612)
.+.+.. ++.+++.-+.+- ..|..- .-.+ ..++| ||+|+...|+++.
T Consensus 125 e~~l~~-----------------~~~l~~~~~~dlvVIDSi~--~l~~~~el~g~~G~~q~~~qar~la----------- 174 (356)
T 3hr8_A 125 EQALEI-----------------VDELVRSGVVDLIVVDSVA--ALVPRAEIEGAMGDMQVGLQARLMS----------- 174 (356)
T ss_dssp HHHHHH-----------------HHHHHHTSCCSEEEEECTT--TCCCHHHHTTCCCSSCSSHHHHHHH-----------
T ss_pred HHHHHH-----------------HHHHhhhcCCCeEEehHhh--hhcChhhhcccchhhHHHHHHHHHH-----------
Confidence 444432 112222111110 011110 0000 12333 5666666666654
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc---------------hHHHhccCeEEEEcCC
Q 046991 203 TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG---------------FRILELFDRLVLLSNG 253 (612)
Q Consensus 203 tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~---------------~~i~~~~D~v~lL~~G 253 (612)
+++..|++++++.+.+||++.|-.. ..+..++|-++.++.+
T Consensus 175 ----------~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 175 ----------QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp ----------HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred ----------HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 5677788888888999999887621 1144678988888763
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.69 E-value=6e-10 Score=110.25 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=41.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-----------hhhcccEEEEecC
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-----------EHFRRISGYVTQD 117 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q~ 117 (612)
++++++ ++++|+|||||||||||++|+|.+.| .+|+|.++|.++.. ...+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 89999999999999999999999977 68999999987621 1235678999984
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.58 E-value=2.1e-09 Score=101.84 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=32.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999 9999999999999999999998754
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.58 E-value=4.2e-09 Score=111.60 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC---------ceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH--
Q 046991 61 PGEI-TAIAGPSGAGKTTLLEILAGKISSR---------KVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE-- 128 (612)
Q Consensus 61 ~Ge~-~aIlG~nGsGKTTLL~~L~G~~~~~---------~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E-- 128 (612)
+|-. ++|+|++|||||||+|.|+|..... +.+|+|.++|.++. +....|++.|.+. ..|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 4444 9999999999999999999986420 35789999886542 2223444443221 11211
Q ss_pred -HHHHHH--H--c---cCCCCC--HHHHHHHHHHHHHHcCCcccc----cccccCCCCCCccChHHHHHHHHH----HHH
Q 046991 129 -TLMCSA--L--L---RLTAGR--RKQAASRVRGLLKELGLDHVA----SSRIGGGSSNCGISGGERRRASIG----VDL 190 (612)
Q Consensus 129 -~l~~~~--~--l---~~~~~~--~~~~~~~v~~~l~~lgL~~~~----~~~vg~~~~~~~LSgGerqRv~ia----~~L 190 (612)
++.... . + ...... ..+..+.+.++++.+++.+.. .+++. .+|+|+++|+.++ +++
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D------l~~~~~~~~~~~~~~l~~~l 323 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID------KINGDLYKKLDLVEKLSKEL 323 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG------GCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC------CCCchHHHHHHHHHHHHHHh
Confidence 111100 0 0 001111 123344567888888876543 33343 5788888988887 554
Q ss_pred -hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 046991 191 -VHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN 224 (612)
Q Consensus 191 -~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 224 (612)
..+|++ +|+|++|......+.+.|.++...
T Consensus 324 ~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 324 YSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 334454 899999999999999999887543
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.56 E-value=2.3e-10 Score=121.61 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=83.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCC-cCCCCCHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDA-LFPLLTVE 127 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~ 127 (612)
..+++++|+.+++|++++|.||||||||||+++|+|.. +|++..-+.+. ..+...+++++|... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999963 57776522111 112223556666643 23333322
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHH---cCCcc-cc---ccc--ccC-CCCCCccChHHHHHHHHHHHHhhCCCEE
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKE---LGLDH-VA---SSR--IGG-GSSNCGISGGERRRASIGVDLVHDPAVV 197 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~--vg~-~~~~~~LSgGerqRv~ia~~L~~~p~ll 197 (612)
..+. -+............+.+.++- +.+.. .. +.. .+. +.....+++|+++|+..+++++.+|+++
T Consensus 229 ~~~~----r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 229 GGES----RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TTTT----TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHHH----hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 2110 001110110011223333331 11110 00 000 000 1122368999999999988888999988
Q ss_pred E-EeCCCC
Q 046991 198 L-IDEPTS 204 (612)
Q Consensus 198 l-LDEPts 204 (612)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.54 E-value=3.9e-08 Score=94.32 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046991 184 ASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMV 222 (612)
Q Consensus 184 v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 222 (612)
...|++++.+|++.++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.51 E-value=5e-09 Score=101.19 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=41.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChh--hhcccEEEEecCCCcC
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAE--HFRRISGYVTQDDALF 121 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~--~~~~~i~yv~Q~~~l~ 121 (612)
..+-.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++... ..+...++++|+....
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 33334566899999999999999999999999975 7888888776421 1122456777754433
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.40 E-value=9.9e-08 Score=99.75 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=88.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHH
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 127 (612)
+..-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= +++..
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAE 87 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHH
Confidence 34567777778999999999999999999999888765421 11 12344331 22332
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLD 207 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 207 (612)
+ ...|+......+.+.+..+ | .||.+|.+|+..|...+.++++++.|+|...
T Consensus 88 q-----------------l~~Rlls~~~~v~~~~l~~---g------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-- 139 (338)
T 4a1f_A 88 Q-----------------LALRALSDLTSINMHDLES---G------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-- 139 (338)
T ss_dssp H-----------------HHHHHHHHHHCCCHHHHHH---T------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--
T ss_pred H-----------------HHHHHHHHhhCCCHHHHhc---C------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--
Confidence 2 2223333333333333322 3 6999999999999999999999999998644
Q ss_pred HHHHHHHHHHHHHHHHcC-CcEEEEEcc
Q 046991 208 SASALHVVTLLKSMVVNQ-GKTIILTIH 234 (612)
Q Consensus 208 ~~~~~~i~~~L~~l~~~~-g~tii~~~H 234 (612)
..++...++++.++. |..+|++-|
T Consensus 140 ---i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 ---IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 336667777776666 677777754
No 172
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.37 E-value=1.2e-07 Score=103.66 Aligned_cols=114 Identities=24% Similarity=0.385 Sum_probs=75.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHH
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEET 129 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 129 (612)
..++++++.+++| +.|.||+|+|||||+++|++.... + .-++.- .+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------~---------f~~is~----------~~- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------P---------FFHISG----------SD- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------C---------EEEEEG----------GG-
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------C---------eeeCCH----------HH-
Confidence 3566777777777 889999999999999999985421 0 001100 00
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCC-------
Q 046991 130 LMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEP------- 202 (612)
Q Consensus 130 l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP------- 202 (612)
..+..+| .|++++|-.++.+....|.+||+||+
T Consensus 85 --------------------------------~~~~~~g--------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 85 --------------------------------FVELFVG--------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp --------------------------------TTTCCTT--------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-
T ss_pred --------------------------------HHHHHhc--------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhc
Confidence 0001122 36678888899999999999999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHHH---HcCCcEEEEEccCCc
Q 046991 203 ---TSGLDSASALHVVTLLKSMV---VNQGKTIILTIHQPG 237 (612)
Q Consensus 203 ---tsgLD~~~~~~i~~~L~~l~---~~~g~tii~~~H~~~ 237 (612)
+.|.|......+.++|..+- ...+..||.+||+|+
T Consensus 125 ~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp --------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred ccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 34677766666667776652 234678999999985
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.34 E-value=5.2e-07 Score=104.61 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=58.0
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCcEEEEE-ccCCchHHHhccCeEE
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLIDEPTS-GLDSASALHVVTLLKSMVVNQGKTIILT-IHQPGFRILELFDRLV 248 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~~g~tii~~-~H~~~~~i~~~~D~v~ 248 (612)
-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.. ...++|++| ||+++ .+.+++++.-
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~-~l~~~~~~~~ 263 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE-KFQRYFNDAP 263 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH-HHHHHTTSCC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH-HHHHHhcCCC
Confidence 689999999999999999999999999996 999887777777766553 235677775 99886 5777877533
No 174
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.32 E-value=4.9e-08 Score=97.96 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=48.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCceeeEEE--------ECCeeCCh----hhhcccEEEE
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILA---GKISSRKVSGKLL--------VNDRPMDA----EHFRRISGYV 114 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~---G~~~~~~~~G~I~--------~~g~~~~~----~~~~~~i~yv 114 (612)
.++++.+ ++|++++|+|||||||||++++|+ |+..+ ++|++. .+|.++.. ..+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3444443 789999999999999999999999 88755 789998 88887632 3566778999
Q ss_pred ecCC
Q 046991 115 TQDD 118 (612)
Q Consensus 115 ~Q~~ 118 (612)
+|++
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8754
No 175
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.31 E-value=1.7e-08 Score=112.23 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=36.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee-EEE-ECCeeC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG-KLL-VNDRPM 102 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G-~I~-~~g~~~ 102 (612)
.+++|++++|+|+||||||||+++|+|++.+ .+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcHH
Confidence 5789999999999999999999999999866 454 774 888654
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.30 E-value=5.2e-08 Score=97.75 Aligned_cols=52 Identities=35% Similarity=0.458 Sum_probs=36.3
Q ss_pred eEEEeee-EEEEecccccccceecccccccCccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 18 RLETKNL-SYKLCSKFDEFNWVYCGVTSKKDPKFILKDVSCEARP---GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 18 ~l~~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.|+++|+ +++|. +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-----------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-----------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-----------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 87761 346799999999999 9999999999999999999999975
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.25 E-value=2.6e-07 Score=88.78 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=27.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
+++++|++++|+||||||||||++.|+++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999999854
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.22 E-value=6.7e-09 Score=114.22 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=83.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh---hhhcccEEEEecCCC-cCCC
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA---EHFRRISGYVTQDDA-LFPL 123 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~ 123 (612)
...+++++++.+++| +.|.||||+|||||+++|+|... .+.+.++|.++.. ....+.+..++|+.. ..|.
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 345788999999999 99999999999999999999874 5788898876532 111223444555532 3444
Q ss_pred CCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeC
Q 046991 124 LTVEETLMCSALLRLT--AGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDE 201 (612)
Q Consensus 124 lTv~E~l~~~~~l~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDE 201 (612)
+.+.|++......+.. ....++..+.+.+++. .|||||+|+..|+++...+|++ |||
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------------~Ldg~~~~~~viviAatn~p~~--LD~ 184 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------------EMDGFEKDTAIVVMAATNRPDI--LDP 184 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------------HGGGCCSSCCCEEEECCSCGGG--SCT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------------HhcccccCccEEEEEecCChhh--cCc
Confidence 4555555321111100 0112333334444442 4788888888888899999987 888
Q ss_pred CCC
Q 046991 202 PTS 204 (612)
Q Consensus 202 Pts 204 (612)
+..
T Consensus 185 aLl 187 (499)
T 2dhr_A 185 ALL 187 (499)
T ss_dssp TTS
T ss_pred ccc
Confidence 864
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.21 E-value=2.2e-07 Score=96.57 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=58.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCCh-------hhh-----cccEEEE-ecCC
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDA-------EHF-----RRISGYV-TQDD 118 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~-----~~~i~yv-~Q~~ 118 (612)
++++++..++|++++|+|+||+||||++..|++.+.+ ..|+|.+.+.+... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4789999999999999999999999999999999865 47899998877532 123 5568888 6664
Q ss_pred CcCCCCCHHHHHH
Q 046991 119 ALFPLLTVEETLM 131 (612)
Q Consensus 119 ~l~~~lTv~E~l~ 131 (612)
...|..++.+++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444334444443
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.20 E-value=1.6e-06 Score=91.35 Aligned_cols=60 Identities=8% Similarity=0.147 Sum_probs=48.3
Q ss_pred ccChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc--cCCc
Q 046991 175 GISGGERRRASIGVDLVHDPAVVLID-EPTSGLDSASALHVVTLLKSMVVNQGKTIILTI--HQPG 237 (612)
Q Consensus 175 ~LSgGerqRv~ia~~L~~~p~lllLD-EPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~--H~~~ 237 (612)
.+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... ++.+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 68999998876 55556778889999 99999999998888888877542 67788887 7764
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.18 E-value=3.2e-07 Score=88.55 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=48.0
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH-HHhccCeEEEEcCCe
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR-ILELFDRLVLLSNGF 254 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~-i~~~~D~v~lL~~G~ 254 (612)
.+.|+.+|..++.....+|+.+..+ .+.++|.....+.+.+++. .+.++|+.+|..... ..+.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~--- 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVD--- 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEE---
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEE---
Confidence 3678888999998888888654333 3355666666655555432 255888888976531 256788887774
Q ss_pred EEEecChhhHHHHHH
Q 046991 255 VVHNGTLNHLEERLK 269 (612)
Q Consensus 255 iv~~G~~~~~~~~f~ 269 (612)
.+++...+...
T Consensus 132 ----~~~e~~~~Rl~ 142 (206)
T 1jjv_A 132 ----VSPQTQLARSA 142 (206)
T ss_dssp ----CCHHHHHHHHC
T ss_pred ----CCHHHHHHHHH
Confidence 45555555553
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.16 E-value=3.4e-07 Score=87.21 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=24.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
|++++|+||||||||||+++|+|+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999853
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.11 E-value=6e-06 Score=86.98 Aligned_cols=58 Identities=7% Similarity=0.114 Sum_probs=40.2
Q ss_pred cChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc
Q 046991 176 ISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH 234 (612)
Q Consensus 176 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H 234 (612)
-++.++++..+++..+.+|+++++.-..+..|..+ ....++++.+......+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774333445433 45566777765443457776665
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.09 E-value=1.3e-06 Score=99.60 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=78.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHHHH
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETLMC 132 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 132 (612)
|+.+++|+.++|+|++|+|||||++.|++...+....|+| .+|.... ..+.++.+++.+|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 3567889999999999999999999999776433356877 5665543 23344556666555433221 1111
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 046991 133 SALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDSASAL 212 (612)
Q Consensus 133 ~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 212 (612)
...|+. | . ..++ .......-..+..++++| |+.|+|+.+..
T Consensus 77 ----------------------------nliDTp-G-~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 77 ----------------------------FLLDAP-G-Y---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEECC-C-S---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEeCC-C-c---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 112221 1 0 0111 111222235677888999 99999987763
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCCch
Q 046991 213 HVVTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 213 ~i~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
++ +.+. +.+..+|++.|..+.
T Consensus 118 -~~---~~~~-~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 -AW---TVAE-RLGLPRMVVVTKLDK 138 (665)
T ss_dssp -HH---HHHH-HTTCCEEEEEECGGG
T ss_pred -HH---HHHH-HccCCEEEEecCCch
Confidence 22 2222 347788888988763
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.08 E-value=1.6e-07 Score=90.45 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=43.9
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEE--EECCeeC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKL--LVNDRPM 102 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I--~~~g~~~ 102 (612)
+.....+..++..++|++++|+||||||||||++.|++.+. ..|.+ +++|.++
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 44556677788889999999999999999999999999974 35776 8887654
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=1.4e-06 Score=83.66 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=25.1
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+...+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567999999999999999999999999999999999876
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.07 E-value=3.6e-06 Score=87.22 Aligned_cols=134 Identities=10% Similarity=0.140 Sum_probs=87.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
..-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.-+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEECC------CCHHH
Confidence 4568888777999999999999999999999888754311 11 124454322 33333
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 046991 129 TLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPTSGLDS 208 (612)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 208 (612)
.. +++......+.+.+..+.. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 111 l~-----------------~R~~~~~~~i~~~~l~~~~-------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NI-----------------KRLIVTAGSINAQKIKAAR-------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HH-----------------HHHHHHHTTCCHHHHHSCH-------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HH-----------------HHHHHHHcCCCHHHHhcCC-------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 22 2222222223333322111 13999999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHcCCcE--EEEEccC
Q 046991 209 ASALHVVTLLKSMVVNQGKT--IILTIHQ 235 (612)
Q Consensus 209 ~~~~~i~~~L~~l~~~~g~t--ii~~~H~ 235 (612)
..++.+.++++.++.|.. +|++-|-
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 445666677776665666 7777653
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=1.8e-06 Score=81.79 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEEC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVN 98 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~ 98 (612)
.+|++++|+||||||||||++.|++..++ ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 36899999999999999999999998753 245666543
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=3.5e-05 Score=78.34 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHc---CCcEEEEEccCCc---hHH
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTSGLDS----------ASALHVVTLLKSMVVN---QGKTIILTIHQPG---FRI 240 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~----------~~~~~i~~~L~~l~~~---~g~tii~~~H~~~---~~i 240 (612)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+...... .+..||.+++++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 45677777777787889999999999876653 2233344444443211 2456788888753 234
Q ss_pred HhccCeEEEE
Q 046991 241 LELFDRLVLL 250 (612)
Q Consensus 241 ~~~~D~v~lL 250 (612)
.+-||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556655443
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.99 E-value=2.5e-05 Score=81.05 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=82.6
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHH
Q 046991 51 ILKDVS-CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEET 129 (612)
Q Consensus 51 iL~~vs-~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 129 (612)
.|+.+- +-+++|+++.|.||+|+|||||+..++.........| | ....+.|+.-+..+ ...+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g-------~~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G-------LSGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C-------CSCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHH
Confidence 344432 5789999999999999999999998886532110001 0 01234555443322 12221
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChH-HHHHHHHHHHHh---hCCCEEEEeCCCCC
Q 046991 130 LMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGG-ERRRASIGVDLV---HDPAVVLIDEPTSG 205 (612)
Q Consensus 130 l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgG-erqRv~ia~~L~---~~p~lllLDEPtsg 205 (612)
.....++.. ..+ ++++.+ .+. +..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~g~---~~~-------~~~~~l--------~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKALGL---DID-------NVMNNI--------YYI-----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHTTC---CHH-------HHHHTE--------EEE-----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHhCC---CHH-------HHhccE--------EEE-----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 111111111 111 122211 111 012333 235677777777 67999999999975
Q ss_pred CCH--------H----HHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 206 LDS--------A----SALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 206 LD~--------~----~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
.+. . ...+++..|++++++.+.+||++.|-.
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 432 1 235667778888888899999987753
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.98 E-value=2.1e-05 Score=82.44 Aligned_cols=146 Identities=9% Similarity=0.031 Sum_probs=82.0
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHH
Q 046991 52 LKDVS-CEARPGEITAIAGPSGAGKTTLLEILAGKI-SSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEET 129 (612)
Q Consensus 52 L~~vs-~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 129 (612)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+....| ....+.|+.-+..+ ...+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-------------~~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-------------PGGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-------------CCCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-------------CCCeEEEEECCCCC----CHHHH
Confidence 44433 578999999999999999999999988752 1110000 01234555444321 12222
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHH-HHHHHHHHHHh----hCCCEEEEeCCCC
Q 046991 130 LMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGE-RRRASIGVDLV----HDPAVVLIDEPTS 204 (612)
Q Consensus 130 l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGe-rqRv~ia~~L~----~~p~lllLDEPts 204 (612)
.....++.. .. +++++.+-+.+ ..++.+ .+.+..++.++ .+++++++|+.++
T Consensus 174 ~~~~~~~g~---~~-------~~~l~~l~~~~-------------~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 174 RDIADRFNV---DH-------DAVLDNVLYAR-------------AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHTTC---CH-------HHHHHTEEEEE-------------CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHcCC---CH-------HHHHhceeEee-------------cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 222222211 11 12233221110 122322 24455556666 5799999999998
Q ss_pred CCCHH------------HHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 205 GLDSA------------SALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 205 gLD~~------------~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
-.+.. ...+++..|++++++.|.+||++.|-..
T Consensus 231 l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 231 LFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp GHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 65432 1356777788888888999998888543
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.95 E-value=2.6e-05 Score=81.99 Aligned_cols=45 Identities=7% Similarity=0.001 Sum_probs=35.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCCcEEEEEccCCc
Q 046991 192 HDPAVVLIDEPTSGLDSASALHVVTLLKSMVV--NQGKTIILTIHQPG 237 (612)
Q Consensus 192 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~--~~g~tii~~~H~~~ 237 (612)
.+|.++++||+... |......+.+.+.+... ..+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876643 14778999999985
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.95 E-value=4.1e-07 Score=85.34 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=31.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM 102 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~ 102 (612)
.+|++++|+|+|||||||+++.|++.. |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999999874 6677777654
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.94 E-value=2.1e-06 Score=84.64 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=34.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM 102 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~ 102 (612)
..++|++++|.|+||||||||+++|+|+ .|+|.++++|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4579999999999999999999999998 37888888764
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.94 E-value=1.2e-06 Score=95.07 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=49.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEE-EcCCeEEEecChh
Q 046991 192 HDPAVVLIDEPTSGLDS-ASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVL-LSNGFVVHNGTLN 262 (612)
Q Consensus 192 ~~p~lllLDEPtsgLD~-~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~l-L~~G~iv~~G~~~ 262 (612)
.+|++|++||+..-.+. .++..+...+..+. +.|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 67888899998875 45789999999865433223333332 4557776666654
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.85 E-value=6.2e-06 Score=84.84 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=83.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTAG 141 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~ 141 (612)
+..++|+|++|+|||||+|.|.|.... + ..+.+- ....+..+++.+++..+ ++ ...|+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~~--tTr~~~~gi~~~~~~~i---~~---------iDTpG~ 66 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKAQ--TTRHRIVGIHTEGAYQA---IY---------VDTPGL 66 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCSS--CCSSCEEEEEEETTEEE---EE---------ESSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCCC--cceeeEEEEEEECCeeE---EE---------EECcCC
Confidence 348999999999999999999997421 1 111221 11234567777654211 00 001111
Q ss_pred CHHHHHHHHHHHHH-----HcCCcccccccccCCCCCCccChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHH
Q 046991 142 RRKQAASRVRGLLK-----ELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV--HDPAVVLIDEPTSGLDSAS-ALH 213 (612)
Q Consensus 142 ~~~~~~~~v~~~l~-----~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~--~~p~lllLDEPtsgLD~~~-~~~ 213 (612)
..+. .....+.+. .+.-.+..--.+ +. . .+|+|++ .+++.+. ..|.++++ +.+|... ...
T Consensus 67 ~~~~-~~~l~~~~~~~~~~~l~~~D~vl~Vv--d~-~-~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 67 HMEE-KRAINRLMNKAASSSIGDVELVIFVV--EG-T-RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CHHH-HHHHHHHHTCCTTSCCCCEEEEEEEE--ET-T-CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred Cccc-hhhHHHHHHHHHHHHHhcCCEEEEEE--eC-C-CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 1000 011111111 011111111111 11 1 2888886 4566666 68999998 7888876 667
Q ss_pred HHHHHHHHHHcCCc--EEEEEccCCchHHHhccCeEE
Q 046991 214 VVTLLKSMVVNQGK--TIILTIHQPGFRILELFDRLV 248 (612)
Q Consensus 214 i~~~L~~l~~~~g~--tii~~~H~~~~~i~~~~D~v~ 248 (612)
+.+.++++++..|. .+.++.|+-. .+.+++|.+.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 78888888755453 6667777765 4667776654
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=9.7e-06 Score=78.52 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999864
No 198
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.77 E-value=0.00013 Score=79.04 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=98.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEE 128 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 128 (612)
-.-|+.+.+-+++|+++.|.|++|+|||||..-++...... .| ..+.|+.-+ ++..+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g---------------~~vl~~slE------~~~~~ 243 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EG---------------VGVGIYSLE------MPAAQ 243 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TC---------------CCEEEEESS------SCHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CC---------------CeEEEEECC------CCHHH
Confidence 34577777779999999999999999999998887654210 11 012222111 12211
Q ss_pred HHHH--HHHccC-------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh--hCCCEE
Q 046991 129 TLMC--SALLRL-------TAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV--HDPAVV 197 (612)
Q Consensus 129 ~l~~--~~~l~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~--~~p~ll 197 (612)
...- +..... ...+. +..+++.+.++.+.-.+..-... .++|..|.+ +.++.+. .+|+++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~-~~~~~~~~a~~~l~~~~l~i~d~------~~~s~~~l~--~~~~~l~~~~~~~lI 314 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTD-RDFSRLVDVASRLSEAPIYIDDT------PDLTLMEVR--ARARRLVSQNQVGLI 314 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCH-HHHHHHHHHHHHHHTSCEEEECC------TTCBHHHHH--HHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCH-HHHHHHHHHHHHHhcCCEEEECC------CCCCHHHHH--HHHHHHHHHcCCCEE
Confidence 1110 000000 00122 22334444444442222111001 157777653 4455555 489999
Q ss_pred EEeCCCCCCCH----------HHHHHHHHHHHHHHHcCCcEEEEEccCCch------------------HHHhccCeEEE
Q 046991 198 LIDEPTSGLDS----------ASALHVVTLLKSMVVNQGKTIILTIHQPGF------------------RILELFDRLVL 249 (612)
Q Consensus 198 lLDEPtsgLD~----------~~~~~i~~~L~~l~~~~g~tii~~~H~~~~------------------~i~~~~D~v~l 249 (612)
++|..+.-.+. .....+.+.|+.+|++.+.+||+++|-.+. .+.+.+|.|+.
T Consensus 315 vID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~ 394 (444)
T 2q6t_A 315 IIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMF 394 (444)
T ss_dssp EEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEE
T ss_pred EEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEE
Confidence 99998764332 123577888999999889999999883210 24567899988
Q ss_pred EcC
Q 046991 250 LSN 252 (612)
Q Consensus 250 L~~ 252 (612)
|..
T Consensus 395 L~r 397 (444)
T 2q6t_A 395 IYR 397 (444)
T ss_dssp EEE
T ss_pred Eec
Confidence 853
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.76 E-value=1.7e-05 Score=76.45 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=27.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|++++|+|+||||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999986
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=4.6e-05 Score=78.14 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788999999999999999999999876
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.73 E-value=5e-06 Score=80.11 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=34.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP 101 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~ 101 (612)
.++|++++|+|+||||||||++.|++.+++ ..|+|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccC
Confidence 578999999999999999999999998754 35777765544
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.73 E-value=1.9e-06 Score=89.46 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=36.2
Q ss_pred CccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 47 DPKFILKDVSCEARPGE------ITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge------~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
+.+..|++++..+.+++ ++||+||||||||||+++|++++..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45667888888887776 9999999999999999999999753
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.72 E-value=9.8e-06 Score=78.10 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
...+|++++|+||||||||||++.|.+..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334899999999999999999999998865
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.65 E-value=4.3e-05 Score=88.97 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=28.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
.+++|+.++|.||||+|||||+++|+|....
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 6789999999999999999999999998743
No 205
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=3.3e-06 Score=82.35 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=42.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEE--------CCeeCCh----hhhcccEEEEecCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLV--------NDRPMDA----EHFRRISGYVTQDD 118 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~--------~g~~~~~----~~~~~~i~yv~Q~~ 118 (612)
+.+++|+|||||||||+.+.|++.+... ..+|++.. +|.++.. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865221 36788876 6766542 24566788888864
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.60 E-value=0.00013 Score=78.45 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhcccEEEEecCCCcCCCCCHHHHHHHHHHccCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFRRISGYVTQDDALFPLLTVEETLMCSALLRLTA 140 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 140 (612)
++.+++++||+||||||++..|++.+.. ..++|.+-+.+... + ...|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r-----------------~--~a~eqL---------- 144 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYR-----------------P--AAYDQL---------- 144 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSC-----------------H--HHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccc-----------------h--hHHHHH----------
Confidence 5889999999999999999999998754 23455443332110 0 111222
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHH
Q 046991 141 GRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLIDEPT-SG--LDSASALHVVTL 217 (612)
Q Consensus 141 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPt-sg--LD~~~~~~i~~~ 217 (612)
...-+..|+.-..... +..--+--+-+++.+...+++++++|+|. .+ .|+....++.++
T Consensus 145 ----------~~~~~~~gv~~~~~~~--------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i 206 (433)
T 3kl4_A 145 ----------LQLGNQIGVQVYGEPN--------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM 206 (433)
T ss_dssp ----------HHHHHTTTCCEECCTT--------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH
T ss_pred ----------HHHHHhcCCceeeccc--------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH
Confidence 2222333443211000 11111222334555555689999999997 34 788777777776
Q ss_pred HHHHHHcCCcEEEEEccC
Q 046991 218 LKSMVVNQGKTIILTIHQ 235 (612)
Q Consensus 218 L~~l~~~~g~tii~~~H~ 235 (612)
++.+. .....+++..|.
T Consensus 207 ~~~~~-pd~vlLVlDa~~ 223 (433)
T 3kl4_A 207 YDVLK-PDDVILVIDASI 223 (433)
T ss_dssp HHHHC-CSEEEEEEEGGG
T ss_pred HHhhC-CcceEEEEeCcc
Confidence 65542 334445555553
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=1.8e-05 Score=82.89 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998763
No 208
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.57 E-value=3.8e-05 Score=71.94 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 209
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.55 E-value=2.8e-05 Score=72.26 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999874
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.54 E-value=4.7e-05 Score=69.89 Aligned_cols=30 Identities=37% Similarity=0.664 Sum_probs=24.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILA 83 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~ 83 (612)
++.++.+.+| +.+|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999987
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.00028 Score=70.08 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=25.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666666 88999999999999999998763
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.0019 Score=67.73 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=28.9
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 51 ILKDVS--CEARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 51 iL~~vs--~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-|+.+- +-+++|+++.|.|++|+|||||...++...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355543 358899999999999999999998887643
No 213
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=0.00076 Score=69.57 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=88.5
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEE-ECCeeCChhhh-cccEEEEecCCCcCCCCCHH
Q 046991 51 ILKDVS-CEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLL-VNDRPMDAEHF-RRISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 51 iL~~vs-~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~-~~g~~~~~~~~-~~~i~yv~Q~~~l~~~lTv~ 127 (612)
-|+.+- +-+++|+++.|.||+|+|||||...++.-.... .|... .+|.+. .-. ...+.|+.-+..+. ..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~--~~~~~~~~~~~~--gg~~~~~v~yi~~e~~~~----~~ 157 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP--EFLFYDEEAVSK--GEVAQPKAVYIDTEGTFR----PE 157 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG--GGEECCTTTSCT--TTTSSEEEEEEESSSCCC----HH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc--cccccccccccc--CCCCCceEEEEECCCCCC----HH
Confidence 344443 568999999999999999999998887532110 11110 011100 000 13456665444321 22
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHH-HHHHHHHHHHh---hCCCEEEEeCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGE-RRRASIGVDLV---HDPAVVLIDEPT 203 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGe-rqRv~ia~~L~---~~p~lllLDEPt 203 (612)
+......++.. .. +++++.+-+.+ ..+.-+ .+-+..+..++ .+++++++|.-+
T Consensus 158 ~l~~~~~~~g~---~~-------~~~~~~l~~~~-------------~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 158 RIMQMAEHAGI---DG-------QTVLDNTFVAR-------------AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHHHHHHHHTC---CH-------HHHHHTEEEEE-------------CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred HHHHHHHHcCC---CH-------HHHhcCEEEEe-------------CCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 22222111211 11 11222111100 122222 23344455555 458999999987
Q ss_pred CCCC--------HH----HHHHHHHHHHHHHHcCCcEEEEEccCCc---------------hHHHhccCeEEEEcC
Q 046991 204 SGLD--------SA----SALHVVTLLKSMVVNQGKTIILTIHQPG---------------FRILELFDRLVLLSN 252 (612)
Q Consensus 204 sgLD--------~~----~~~~i~~~L~~l~~~~g~tii~~~H~~~---------------~~i~~~~D~v~lL~~ 252 (612)
+-.. .. ...+++..|++++++.+.+||++.|-.. ..+.+.+|.++.|+.
T Consensus 215 ~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 215 STFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 5321 11 2356677788888888988888876321 014556787887764
No 214
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.37 E-value=8.4e-06 Score=85.35 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=43.0
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP 101 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~ 101 (612)
+.+.+++++++..++|.+++|+|++|+|||||++.|+|...+ ..|+|.+-+.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~~d 93 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEeec
Confidence 345688999999999999999999999999999999998754 34555554443
No 215
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.00031 Score=70.75 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=24.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999875
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.33 E-value=3.7e-05 Score=85.51 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=42.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee
Q 046991 48 PKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP 101 (612)
Q Consensus 48 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~ 101 (612)
...+++++++.+ +|+.++|+||||+|||||+++|++...+ ..|+|.++|..
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~~ 145 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC--
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEecccc
Confidence 345678888888 8999999999999999999999999855 67888777643
No 217
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.28 E-value=7.8e-06 Score=86.30 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=30.5
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCe
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDR 100 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~ 100 (612)
+++.++++++++| +|+|++|+|||||++.|.|.... ..|.+..++.
T Consensus 28 ~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~--~~~~~~~~~~ 73 (361)
T 2qag_A 28 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERVIPGAAE 73 (361)
T ss_dssp HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------------
T ss_pred CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC--CCCcccCCCc
Confidence 4567889999887 99999999999999999887543 3444443443
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.26 E-value=0.00037 Score=68.53 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCcEEEEE-ccCCchHHHhccCe
Q 046991 177 SGGERRRASIGVDLVHDPAVVLIDEPTS-GLDSASALHVVTLLKSMVVNQGKTIILT-IHQPGFRILELFDR 246 (612)
Q Consensus 177 SgGerqRv~ia~~L~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~~g~tii~~-~H~~~~~i~~~~D~ 246 (612)
+.|...+.. ...+.+.+++++||.-. ++|.......++.+.+... .-+++++| |.+.+ .+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~-~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTS-MFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCH-HHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHH-HHHHHcCC
Confidence 556655553 33578999999999976 6887766555555544322 23355554 34433 35555543
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.26 E-value=0.0002 Score=77.44 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=39.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----------CceeeEEEECCeeCC---hhhhcccEEEEecCCCcCCCCCHHHHH
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISS----------RKVSGKLLVNDRPMD---AEHFRRISGYVTQDDALFPLLTVEETL 130 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~----------~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l 130 (612)
.++|+|+||+|||||+|.|+|.... .+.+|++.++|+++. ..-.++...+.+|....+..+++.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999998531 135789999998642 122233344444544445544445555
Q ss_pred H
Q 046991 131 M 131 (612)
Q Consensus 131 ~ 131 (612)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
No 220
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.25 E-value=3.5e-05 Score=81.22 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.23 E-value=7.2e-05 Score=70.16 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=30.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee--EEEECCee
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG--KLLVNDRP 101 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G--~I~~~g~~ 101 (612)
++|++++|+|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChH
Confidence 47999999999999999999999998633 34 56566544
No 222
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.20 E-value=0.0013 Score=71.29 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=91.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCChhhhc-ccEEEEecCCCcCCCCCHH
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMDAEHFR-RISGYVTQDDALFPLLTVE 127 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~ 127 (612)
..-|+.+.+-+++|+++.|.|++|+|||||.--++...... ...+.+-.-+.+.+++. +..+.. .....
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~~~~-------~~i~~- 253 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVTA-------GSINA- 253 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHHHHH-------SCCCH-
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHHH-------cCCCH-
Confidence 34566666668999999999999999999987776543110 11232222222221111 100000 00111
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHh--hCCC--EEEEeCCC
Q 046991 128 ETLMCSALLRLTAGRRKQAASRVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLV--HDPA--VVLIDEPT 203 (612)
Q Consensus 128 E~l~~~~~l~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~--~~p~--lllLDEPt 203 (612)
+.+.- ..-.+.... ..++.+..+.+.-.+. .+. +. .++|-.+-+. .++.+. .+|+ ++++|--.
T Consensus 254 ~~l~~-g~~~l~~~~----~~~l~~a~~~l~~~~l---~i~-d~--~~~s~~~i~~--~ir~l~~~~~~~~~lIVID~Lq 320 (444)
T 3bgw_A 254 QKIKA-ARRDFASED----WGKLSMAIGEISNSNI---NIF-DK--AGQSVNYIWS--KTRQTKRKNPGKRVIVMIDYLQ 320 (444)
T ss_dssp HHHHH-TGGGTCCSC----HHHHHHHHHHHHTSCE---EEE-CC--SSCBHHHHHH--HHHHHHHHSCSSCEEEEEECST
T ss_pred HHHhc-ccCCCCHHH----HHHHHHHHHHHhcCCE---EEE-CC--CCCCHHHHHH--HHHHHHHHhCCCCeEEEEecHH
Confidence 11110 000011111 1223333333311111 111 00 1456655332 334443 4789 99999654
Q ss_pred C---CC---C-HHHHHHHHHHHHHHHHcCCcEEEEEccCCch------------------HHHhccCeEEEEcC
Q 046991 204 S---GL---D-SASALHVVTLLKSMVVNQGKTIILTIHQPGF------------------RILELFDRLVLLSN 252 (612)
Q Consensus 204 s---gL---D-~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~------------------~i~~~~D~v~lL~~ 252 (612)
. +- + ......+...|+.+|++.|.+||+++|-.+. .+.+.+|-|+.|..
T Consensus 321 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 321 LLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp TSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 2 11 1 2234567788999999999999999984321 26677888888753
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.18 E-value=0.00043 Score=64.31 Aligned_cols=27 Identities=44% Similarity=0.624 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999975
No 224
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.17 E-value=8.1e-05 Score=78.12 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=33.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM 102 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~ 102 (612)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeecC
Confidence 46889999999999999999999998754 356776665544
No 225
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.16 E-value=0.00014 Score=71.62 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=27.2
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 51 ILKDVSCEAR---PGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 51 iL~~vs~~i~---~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
=|+++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 999999999999999999999999874
No 226
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.15 E-value=0.00024 Score=68.54 Aligned_cols=29 Identities=38% Similarity=0.685 Sum_probs=24.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILA 83 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~ 83 (612)
+.++.+.+| +++|.|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999886
No 227
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.0018 Score=63.48 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEEcc
Q 046991 192 HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVN-QGKTIILTIH 234 (612)
Q Consensus 192 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tii~~~H 234 (612)
.+|+++++..+.+.++......+..+++..... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 368999999998888886666555555433221 1247888888
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.06 E-value=0.00053 Score=64.75 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=27.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------CceeeEEEECCe
Q 046991 50 FILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISS------RKVSGKLLVNDR 100 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~------~~~~G~I~~~g~ 100 (612)
.+++++++..++. .++++|++|+|||||++.+.+.... +...+++.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4789999998888 5689999999999999999984311 123455655553
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.01 E-value=0.00014 Score=70.24 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=34.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceee--EEEECCe
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSG--KLLVNDR 100 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G--~I~~~g~ 100 (612)
.+++|.+++|.|++||||||+.+.|++.+.+ ..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECCh
Confidence 4678999999999999999999999998753 356 7777654
No 230
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.97 E-value=0.00018 Score=68.73 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999865
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.92 E-value=0.00039 Score=66.69 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999999876
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.00041 Score=65.49 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=26.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 54 DVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 54 ~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999986
No 233
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.0023 Score=65.79 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=32.4
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 191 VHDPAVVLIDEPTS-GLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 191 ~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
..+|++|++||+.. .-|...+..+...+..+... ++.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 35699999999866 23447788888888887644 56666666644
No 234
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.89 E-value=0.00022 Score=67.97 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=31.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 468899999888885 689999999999999999874
No 235
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.0053 Score=64.26 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999765
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.87 E-value=0.0016 Score=66.14 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=23.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
..+.|.||+|+|||||.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999999864
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.82 E-value=0.0034 Score=68.92 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=46.5
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHcCCcEEEEEccCCc----------------
Q 046991 184 ASIGVDLV--HDPAVVLIDEPTSGL-------DS-ASALHVVTLLKSMVVNQGKTIILTIHQPG---------------- 237 (612)
Q Consensus 184 v~ia~~L~--~~p~lllLDEPtsgL-------D~-~~~~~i~~~L~~l~~~~g~tii~~~H~~~---------------- 237 (612)
++.++.++ .+|+++++|=-+. + +. .....++..|+++|++.|.+||+++|-..
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~ 421 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSIT 421 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSS
T ss_pred HHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChh
Confidence 33444444 4799999995433 2 21 23456788899999989999999988542
Q ss_pred -----hHHHhccCeEEEEc
Q 046991 238 -----FRILELFDRLVLLS 251 (612)
Q Consensus 238 -----~~i~~~~D~v~lL~ 251 (612)
..+.+.+|-|+.|.
T Consensus 422 dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 422 DLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SCSSSSHHHHHCSEEEEEE
T ss_pred hhccchHhhecCcEEEEEE
Confidence 12556789999985
No 238
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.82 E-value=0.0011 Score=64.25 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.81 E-value=0.0013 Score=60.24 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.77 E-value=0.0023 Score=62.71 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc---------CCchHHHhccCeEEEEc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH---------QPGFRILELFDRLVLLS 251 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H---------~~~~~i~~~~D~v~lL~ 251 (612)
+|+++++||--. |+. .+++.++.+++. |.+||++-| .+..++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777664 899999999 56667889999999875
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.74 E-value=0.0035 Score=77.49 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=26.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999998764
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.74 E-value=0.0006 Score=65.06 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 046991 64 ITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G 84 (612)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.71 E-value=0.00033 Score=75.24 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=40.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeCC
Q 046991 53 KDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPMD 103 (612)
Q Consensus 53 ~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~~ 103 (612)
+++++. +|++++++|+|||||||++..|++.+.+ ..|+|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeecccc
Confidence 577777 8999999999999999999999999865 4688888776653
No 244
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.0024 Score=62.38 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=42.8
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchH---------HHhccCeEEEEc
Q 046991 191 VHDPAVVLIDEPTS----GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFR---------ILELFDRLVLLS 251 (612)
Q Consensus 191 ~~~p~lllLDEPts----gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~---------i~~~~D~v~lL~ 251 (612)
-.+|+++++|--+. .-|......++..|++++++.|.++++++|..+.. +...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788888886432 12455667788889999998999999999864321 235789888875
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.65 E-value=0.006 Score=60.13 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999864
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.64 E-value=0.00098 Score=70.32 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=27.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 046991 52 LKDVSCEARPGEITAIAGPSGAGKTTLLEILA 83 (612)
Q Consensus 52 L~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~ 83 (612)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677788776 99999999999999999986
No 247
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.63 E-value=0.0015 Score=68.18 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999765
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.02 Score=60.21 Aligned_cols=29 Identities=38% Similarity=0.508 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
+-+++|+++.|.||+|+|||||...++..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 36899999999999999999998777643
No 249
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.61 E-value=0.00025 Score=74.18 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=33.9
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 046991 50 FILKDVSCEARPGEI--TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 50 ~iL~~vs~~i~~Ge~--~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478888888999999 9999999999999999999876
No 250
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.022 Score=58.69 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456678999999999999999999875
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.00079 Score=63.37 Aligned_cols=39 Identities=33% Similarity=0.376 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-ceeeEEEECCee
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKISSR-KVSGKLLVNDRP 101 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~~~-~~~G~I~~~g~~ 101 (612)
.+++|.|+||||||||++.|.+.++.. ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999875321 234677766543
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.00048 Score=68.63 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=35.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCee
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRP 101 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~ 101 (612)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 444444 5678899999999999999999999998632 456666643
No 253
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.00028 Score=73.33 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=37.5
Q ss_pred CccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 046991 47 DPKFILKDVSCEARPGEI--TAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~--~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
+...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 556788999999999999 999999999999999999998643
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.0012 Score=62.07 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
.+|.+++|.|++||||||+.+.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999874
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.49 E-value=0.0014 Score=61.44 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.49 E-value=0.0011 Score=63.18 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 257
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.47 E-value=0.0012 Score=70.15 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCceeeEEEECCe
Q 046991 56 SCEARPGEITAIAGPSGAGKTTLLEILAGKIS---------SRKVSGKLLVNDR 100 (612)
Q Consensus 56 s~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~---------~~~~~G~I~~~g~ 100 (612)
-+.+..|..++|+|+||+|||||+|.|+|... ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567888999999999999999999999821 0135688877664
No 258
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.46 E-value=0.00028 Score=72.31 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=38.0
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECCeeC
Q 046991 53 KD-VSCEARPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVNDRPM 102 (612)
Q Consensus 53 ~~-vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g~~~ 102 (612)
++ +++..+ |++++++|++|+||||++..|++...+ ..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 45 777766 999999999999999999999999854 356777766554
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.34 E-value=0.0018 Score=59.48 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999775
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.33 E-value=0.002 Score=59.72 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998763
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.002 Score=63.26 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=24.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999854
No 262
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.24 E-value=0.0059 Score=62.90 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 046991 57 CEARPGEITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL~~L~G 84 (612)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6788999999999999999999999875
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.21 E-value=0.0021 Score=60.04 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 264
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.18 E-value=0.0044 Score=63.75 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=22.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHcC
Q 046991 57 CEARPGEITAIAGPSGAGKTTLL-EILAGK 85 (612)
Q Consensus 57 ~~i~~Ge~~aIlG~nGsGKTTLL-~~L~G~ 85 (612)
+=+.+| ++.|.||+|+|||||+ .+++..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 457899 9999999999999994 444443
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.14 E-value=0.0028 Score=59.26 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.10 E-value=0.0028 Score=62.49 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999664
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.09 E-value=0.0082 Score=65.69 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455569999999999999999998764
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.09 E-value=0.0027 Score=59.59 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998654
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.08 E-value=0.0028 Score=63.15 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999865
No 270
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.06 E-value=0.013 Score=73.46 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=49.0
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HHcCCcEEEEEccCCch------
Q 046991 183 RASIGVDLV--HDPAVVLIDEPTSGLD-S------------ASALHVVTLLKSM---VVNQGKTIILTIHQPGF------ 238 (612)
Q Consensus 183 Rv~ia~~L~--~~p~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~~~g~tii~~~H~~~~------ 238 (612)
-+.+++.++ .+|+++++|.-++=.. + ..+..+.+.|+++ +++.|.+||++.|-.+.
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345556554 4799999999876542 1 1223445555555 67889999999874221
Q ss_pred ---------HHHhccCeEEEEcCCeEEEec
Q 046991 239 ---------RILELFDRLVLLSNGFVVHNG 259 (612)
Q Consensus 239 ---------~i~~~~D~v~lL~~G~iv~~G 259 (612)
.+...+|-++.|+.....+.|
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 256788999988765543333
No 271
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.03 E-value=0.021 Score=59.73 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..-+.|.||+|+|||||.+.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445568899999999999999999865
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.98 E-value=0.0036 Score=60.29 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G 84 (612)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.93 E-value=0.0037 Score=57.13 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 046991 64 ITAIAGPSGAGKTTLLEIL 82 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L 82 (612)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.91 E-value=0.0037 Score=59.44 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997654
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.89 E-value=0.067 Score=66.27 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=29.0
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 50 FILKDVS--CEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 50 ~iL~~vs--~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
.-|+.+- +=+++|+++.|.||+|+|||||.--++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3466654 35899999999999999999998777654
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.87 E-value=0.0044 Score=57.90 Aligned_cols=26 Identities=31% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998764
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0042 Score=63.11 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=28.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCceeeEEEECC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISSRKVSGKLLVND 99 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~~~~~G~I~~~g 99 (612)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4578999999999999999999987652 24455554
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.84 E-value=0.0045 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.83 E-value=0.0041 Score=57.93 Aligned_cols=27 Identities=37% Similarity=0.308 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+..+.|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998553
No 280
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.82 E-value=0.044 Score=56.22 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355668999999999999999998764
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.82 E-value=0.0051 Score=58.47 Aligned_cols=27 Identities=30% Similarity=0.483 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.81 E-value=0.0046 Score=58.40 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999875
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.75 E-value=0.0054 Score=56.68 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 046991 63 EITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G 84 (612)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 284
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.74 E-value=0.0075 Score=59.00 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.0
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEI-TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~-~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.|++ +.+.|+.|+||||+.-.++...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4555 7788999999999966666554
No 285
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.73 E-value=0.02 Score=54.56 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=40.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc---------CCchHHHhccCeEEEEc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH---------QPGFRILELFDRLVLLS 251 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H---------~~~~~i~~~~D~v~lL~ 251 (612)
+.+++++||--- +|+. .++.+++++.. |+.||++-+ .+..++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6543 35667777665 899999999 45567889999998775
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.72 E-value=0.0046 Score=57.34 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999765
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.66 E-value=0.0056 Score=58.34 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.61 E-value=0.0061 Score=57.59 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999976
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.60 E-value=0.003 Score=60.41 Aligned_cols=24 Identities=50% Similarity=0.756 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.60 E-value=0.0057 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998654
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.58 E-value=0.0052 Score=61.59 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeE
Q 046991 202 PTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRL 247 (612)
Q Consensus 202 PtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v 247 (612)
|||+++.....++.+.+.+...+...+..+..|..+ ++.+.+|++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHH
Confidence 899999999889988888877655555555666654 455555443
No 292
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.55 E-value=0.011 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999998766543
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.54 E-value=0.0065 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
.+++|+|++|||||||++.|...++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988753
No 294
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.51 E-value=0.0066 Score=57.91 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998654
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0077 Score=56.31 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.48 E-value=0.0067 Score=56.63 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 297
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.33 E-value=0.012 Score=60.37 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=33.7
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
.....+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4567889988888 8999999999999999999999886
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.0078 Score=56.19 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999875
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.28 E-value=0.0071 Score=56.92 Aligned_cols=27 Identities=41% Similarity=0.447 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.+.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998764
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.27 E-value=0.0082 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
No 301
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.075 Score=56.36 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.=+.+.||+|+|||+|.+++|+..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 348899999999999999999975
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.27 E-value=0.0098 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+|..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998765
No 303
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.06 Score=57.79 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++-.=+.+.||+|+|||+|.+++|+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3444558899999999999999999975
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.26 E-value=0.0093 Score=54.36 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999875
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0096 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 306
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.21 E-value=0.0077 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
-++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999988653
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.20 E-value=0.0092 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999865
No 308
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.081 Score=56.82 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++-.=+.+.||+|+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444558899999999999999999875
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.16 E-value=0.0095 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999875
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.16 E-value=0.0095 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 311
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.15 E-value=0.14 Score=53.85 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++.-+.|.||+|+|||+|.+.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998775
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.14 E-value=0.011 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.14 E-value=0.0096 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999764
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.13 E-value=0.011 Score=53.74 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046991 65 TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 65 ~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998764
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.13 E-value=0.0077 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=18.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998665
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.11 E-value=0.0089 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998764
No 317
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.07 E-value=0.0099 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.07 E-value=0.01 Score=53.64 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999875
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.06 E-value=0.011 Score=57.40 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++..++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998654
No 320
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.05 E-value=0.022 Score=54.56 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=31.1
Q ss_pred CccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 47 DPKFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 47 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.....++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455677765554 68899999999999999999998774
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.05 E-value=0.011 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
No 322
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.04 E-value=0.012 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.011 Score=53.47 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998765
No 324
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.01 E-value=0.011 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.01 E-value=0.013 Score=55.49 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998754
No 326
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.01 E-value=0.0094 Score=55.43 Aligned_cols=23 Identities=43% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 327
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.99 E-value=0.01 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046991 65 TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 65 ~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999765
No 328
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.99 E-value=0.011 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
No 329
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.11 Score=55.77 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++-.=+.+.||+|+|||+|.++||+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344458899999999999999999875
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.98 E-value=0.011 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 331
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.96 E-value=0.017 Score=60.66 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=28.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC---------CCceeeEEEECC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKIS---------SRKVSGKLLVND 99 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~~---------~~~~~G~I~~~g 99 (612)
|-.++|+|.+|+|||||+|.|+|... ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 113467777765
No 332
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.95 E-value=0.013 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 333
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.94 E-value=0.012 Score=58.17 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
-++|+|++|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999999764
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.93 E-value=0.011 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 335
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.92 E-value=0.013 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.91 E-value=0.015 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998864
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.90 E-value=0.014 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
=+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.89 E-value=0.015 Score=57.93 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998763
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.89 E-value=0.013 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.88 E-value=0.011 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999874
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.87 E-value=0.012 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998765
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.86 E-value=0.015 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998654
No 343
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.85 E-value=0.33 Score=52.09 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999997763
No 344
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.85 E-value=0.012 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999875
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.85 E-value=0.012 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 346
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.82 E-value=0.013 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999753
No 347
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.81 E-value=0.013 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999765
No 348
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.80 E-value=0.015 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999764
No 349
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.80 E-value=0.0081 Score=63.54 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCcEEEEEccCCch
Q 046991 193 DPAVVLIDEPTSGLD---SASALHVVTLLKSMVVNQGKTIILTIHQPGF 238 (612)
Q Consensus 193 ~p~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~ 238 (612)
.|.++++||--.=++ +..+..+.+.+++.+ +.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHH
Confidence 588999999988884 667778888888874 568899999999873
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.79 E-value=0.012 Score=54.41 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046991 65 TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 65 ~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999874
No 351
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.79 E-value=0.013 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999874
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.78 E-value=0.015 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|.||+||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997654
No 353
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.78 E-value=0.016 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 354
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.76 E-value=0.014 Score=52.94 Aligned_cols=23 Identities=43% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++++|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.74 E-value=0.016 Score=54.01 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998654
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.72 E-value=0.014 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 357
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.72 E-value=0.014 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 358
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.71 E-value=0.015 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046991 65 TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 65 ~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++++|++|+|||||++.+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998643
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.65 E-value=0.018 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++-.++|.||+||||||+.+.|+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998653
No 360
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.65 E-value=0.017 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3789999999999999999998643
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.63 E-value=0.0097 Score=54.84 Aligned_cols=23 Identities=43% Similarity=0.354 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
-.++|+|++|+|||||++.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999753
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.60 E-value=0.015 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 363
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.016 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
-++|+|++|+|||||++.+.+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 489999999999999999987653
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.58 E-value=0.016 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999865
No 365
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.58 E-value=0.016 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999764
No 366
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.53 E-value=0.017 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999864
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.51 E-value=0.017 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 368
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.50 E-value=0.019 Score=58.71 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999874
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.49 E-value=0.016 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 370
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.46 E-value=0.12 Score=50.02 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcc---------CCchHHHhccCeEEEEc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIH---------QPGFRILELFDRLVLLS 251 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H---------~~~~~i~~~~D~v~lL~ 251 (612)
+.+++++||--- +|+. .++.+++++.+ |+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33667777654 899999999 67778899999999875
No 371
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.46 E-value=0.015 Score=58.29 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998764
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.45 E-value=0.019 Score=56.66 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 373
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.44 E-value=0.17 Score=49.51 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccC---------CchHHHhccCeEEEEc
Q 046991 192 HDPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQ---------PGFRILELFDRLVLLS 251 (612)
Q Consensus 192 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~---------~~~~i~~~~D~v~lL~ 251 (612)
.+.+++++||----.| +.++++.++. .|+.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 5555555554 58999999999 7778999999999875
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.018 Score=54.99 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999875
No 375
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.43 E-value=0.018 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998764
No 376
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.41 E-value=0.018 Score=54.14 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999875
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.41 E-value=0.019 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.=-++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999865
No 378
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.40 E-value=0.017 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998765
No 379
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.39 E-value=0.021 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
...+++|.|+.||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999865
No 380
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.37 E-value=0.019 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.36 E-value=0.015 Score=54.81 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997653
No 382
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.35 E-value=0.039 Score=69.25 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=30.9
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 51 ILKDVSC--EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 51 iL~~vs~--~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-|+.+.+ =+++|+++.|-|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666664 69999999999999999999999888765
No 383
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.35 E-value=0.021 Score=58.41 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999974
No 384
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.33 E-value=0.02 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999865
No 385
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.32 E-value=0.034 Score=57.58 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999886
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.018 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999998753
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.31 E-value=0.019 Score=56.72 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.29 E-value=0.018 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 389
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.078 Score=57.16 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++-.=+.+.||+|+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3445558899999999999999999875
No 390
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.28 E-value=0.021 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999764
No 391
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.27 E-value=0.019 Score=60.43 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 046991 65 TAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 65 ~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++|+|++|+|||||++.|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999863
No 392
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.019 Score=53.70 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998865
No 393
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.25 E-value=0.026 Score=51.82 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998775
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.24 E-value=0.021 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 395
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.23 E-value=0.024 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.23 E-value=0.023 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999865
No 397
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.23 E-value=0.022 Score=56.68 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.20 E-value=0.023 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 399
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.18 E-value=0.021 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 400
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.17 E-value=0.021 Score=55.96 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=22.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999987763
No 401
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.17 E-value=0.023 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 402
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.16 E-value=0.027 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 403
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.14 E-value=0.022 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
-++|+|++|+|||||++.+.|...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4899999999999999999997543
No 404
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.13 E-value=0.022 Score=57.23 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.12 E-value=0.022 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 406
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.12 E-value=0.023 Score=53.45 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 407
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.11 E-value=0.013 Score=56.02 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.09 E-value=0.021 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999875
No 409
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.09 E-value=0.028 Score=54.58 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=24.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++..++.|+||+||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998664
No 410
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.08 E-value=0.024 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999764
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.06 E-value=0.024 Score=57.18 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 046991 62 GEITAIAGPSGAGKTTLLEILAG 84 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G 84 (612)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 412
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.05 E-value=0.022 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998543
No 413
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.05 E-value=0.024 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998764
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.024 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.+..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 415
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.022 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999865
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.02 E-value=0.014 Score=59.26 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998754
No 417
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.02 E-value=0.0074 Score=57.76 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 578999999865 7888888777777643 23667888888765
No 418
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.02 E-value=0.024 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999985
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.02 E-value=0.025 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 420
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.01 E-value=0.022 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.00 E-value=0.019 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999875
No 422
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.99 E-value=0.032 Score=53.99 Aligned_cols=28 Identities=36% Similarity=0.614 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
-+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987764
No 423
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.025 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.026 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999764
No 425
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.97 E-value=0.025 Score=54.60 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.|..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998863
No 426
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.97 E-value=0.025 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998864
No 427
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.96 E-value=0.026 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999865
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.95 E-value=0.03 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 429
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.94 E-value=0.026 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998865
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.026 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999764
No 431
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.93 E-value=0.029 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999865
No 432
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.92 E-value=0.023 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.91 E-value=0.027 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998754
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.024 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988754
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.86 E-value=0.033 Score=54.19 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 436
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.84 E-value=0.022 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.77 E-value=0.027 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.77 E-value=0.032 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998764
No 439
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.73 E-value=0.031 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999998764
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.67 E-value=0.031 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 441
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.66 E-value=0.028 Score=56.58 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 442
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.65 E-value=0.033 Score=59.56 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-.+.+++.|+|++||||||+.+.|+...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467899999999999999999998654
No 443
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.64 E-value=0.029 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 444
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.63 E-value=0.034 Score=57.71 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999876
No 445
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.63 E-value=0.032 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 446
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.60 E-value=0.021 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 447
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.59 E-value=0.036 Score=54.57 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987764
No 448
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.59 E-value=0.032 Score=51.15 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998775
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.58 E-value=0.039 Score=59.71 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 51 ILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 51 iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 466789999999999999999999998765
No 450
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.57 E-value=0.041 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999876
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.53 E-value=0.03 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999997653
No 452
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.49 E-value=0.032 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999864
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.45 E-value=0.041 Score=52.98 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
++.|+||+||||+|..+.|+-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.45 E-value=0.035 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999975
No 455
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.36 E-value=0.16 Score=58.51 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 59 ARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 59 i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++-.=+.+.||+|+|||||.+++++..
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444558899999999999999999876
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.043 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 457
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.29 E-value=0.068 Score=50.02 Aligned_cols=36 Identities=19% Similarity=0.060 Sum_probs=28.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 046991 49 KFILKDVSCEARPGEITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 49 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
+..+|..-.. -.|.-++|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3455555444 56889999999999999999988764
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.037 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999764
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.28 E-value=0.045 Score=52.99 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999988764
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.27 E-value=0.044 Score=53.19 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKISS 88 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~~~ 88 (612)
.+|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999988753
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.27 E-value=0.038 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999875
No 462
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.27 E-value=0.041 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999865
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.26 E-value=0.051 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..|.++++.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998765
No 464
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.24 E-value=0.088 Score=61.52 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998763
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.22 E-value=0.045 Score=56.43 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999876
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.21 E-value=0.047 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999876
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.15 E-value=0.046 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999864
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.08 E-value=0.021 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 469
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.044 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999865
No 470
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.07 E-value=0.015 Score=59.78 Aligned_cols=42 Identities=7% Similarity=0.129 Sum_probs=32.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
+++++++|| ...|++..+..+.+.+.+.. .+..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 567999999 78899999988998888753 2445677777665
No 471
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.05 E-value=0.043 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.01 E-value=0.034 Score=55.21 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999999876
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.00 E-value=0.042 Score=51.87 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998764
No 474
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.95 E-value=0.03 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
-++++|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999654
No 475
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.92 E-value=0.022 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 476
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.89 E-value=0.084 Score=50.34 Aligned_cols=71 Identities=23% Similarity=0.145 Sum_probs=53.4
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCchHHHhccCeEEEEcCCe
Q 046991 182 RRASIGVDLV--HDPAVVLIDEPTS--GLDSASALHVVTLLKSMVVNQGKTIILTIHQPGFRILELFDRLVLLSNGF 254 (612)
Q Consensus 182 qRv~ia~~L~--~~p~lllLDEPts--gLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~i~~~~D~v~lL~~G~ 254 (612)
+.+.-++..+ .+.++++|||.+. .++-....++++.|.+ +-.+..||+|.+.+..++.+++|-|.-|..-+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 3444555566 5689999999976 2344445568888875 34578999999999999999999999997644
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.72 E-value=0.066 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3579999999999999999999775
No 478
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.70 E-value=0.049 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++++|++|+|||||++.+.+..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 479
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.67 E-value=0.047 Score=58.97 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 180 ERRRASIGVDLVHDPAVVLIDEP-TSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 180 erqRv~ia~~L~~~p~lllLDEP-tsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
+.+....+...+.+++++++... +.++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~----~~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY----RTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT----TCCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH----HcCCCEEEEEECcc
Confidence 56666667777777887665544 44566554 44555554 34678888877654
No 480
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.64 E-value=0.05 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.62 E-value=0.055 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998764
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.52 E-value=0.017 Score=57.31 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=22.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 58 EARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 58 ~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
....| +.|.||+|+|||||.++|+...
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444 7799999999999999999864
No 483
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.38 E-value=0.071 Score=50.16 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc---------hHHHhccCeEEEEc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG---------FRILELFDRLVLLS 251 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~---------~~i~~~~D~v~lL~ 251 (612)
+++++++||--. +|+ .+++.|++++++ |..|+++.++.+ ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366677777765 889999888443 34566788887664
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.33 E-value=0.069 Score=56.63 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+++|+||+|||||||.+.|+-..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999765
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.20 E-value=0.25 Score=56.82 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+.+.||+|+|||+|.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 486
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.14 E-value=0.21 Score=54.24 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=52.3
Q ss_pred CccChHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 174 CGISGGERRRASIGV--DLVH---------------DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 174 ~~LSgGerqRv~ia~--~L~~---------------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
.+.||||+|-.-+|+ ++++ .-.++++||. +-+|...+...+++++++ |.=+|+++-+
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~- 451 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE- 451 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS-
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc-
Confidence 489999999644443 3333 1247999999 999999999999999876 5566666655
Q ss_pred chHHHhccCeEEEEc
Q 046991 237 GFRILELFDRLVLLS 251 (612)
Q Consensus 237 ~~~i~~~~D~v~lL~ 251 (612)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2567788888774
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.08 E-value=0.025 Score=65.67 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=28.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 55 VSCEARPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 55 vs~~i~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++.+.+|+.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35567899999999999999999999999986
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.05 E-value=0.076 Score=47.60 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCC
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQP 236 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~ 236 (612)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|++++.+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 34679999984 68888888888888442 2345667777654
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.99 E-value=0.079 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
--+||+|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998654
No 490
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.79 E-value=0.085 Score=49.53 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEccCCc
Q 046991 193 DPAVVLIDEPTSGLDSASALHVVTLLKSMVVNQGKTIILTIHQPG 237 (612)
Q Consensus 193 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~ 237 (612)
++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 6789999996 457777777788777764 23566777777654
No 491
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.68 E-value=0.13 Score=54.18 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC---------CceeeEEEECCeeC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKISS---------RKVSGKLLVNDRPM 102 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~~~---------~~~~G~I~~~g~~~ 102 (612)
-+||+|.+-+|||||+|.|+|-... .+..|.+.++|.++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 5899999999999999999997531 13568888877653
No 492
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.64 E-value=0.096 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 61 PGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 61 ~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
..-+++|+|++|+|||||++.|++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998765
No 493
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.62 E-value=0.092 Score=52.92 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+++.-+.|.||+|+|||||.+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999998775
No 494
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.57 E-value=0.1 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 62 GEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 62 Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988763
No 495
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.50 E-value=0.084 Score=56.05 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCccChHHHHHHHHHHHHhhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHHcC
Q 046991 149 RVRGLLKELGLDHVASSRIGGGSSNCGISGGERRRASIGVDLVHDPAVVLI---DEPTSGLDSASALHVVTLLKSMVVNQ 225 (612)
Q Consensus 149 ~v~~~l~~lgL~~~~~~~vg~~~~~~~LSgGerqRv~ia~~L~~~p~lllL---DEPtsgLD~~~~~~i~~~L~~l~~~~ 225 (612)
.++++++.++.... .. .+|.+|.+++.-...+...|-++++ |.+ +. ..+.++.+.+ ...
T Consensus 181 ~~~~~l~~l~~~~~----~~------~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~~---~~l~~l~~~~-~~~ 242 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PT------KWSQDDLLAFASEIRRVNKPMVIAANKADAA----SD---EQIKRLVREE-EKR 242 (397)
T ss_dssp HHHHHHHHTTCCSC----GG------GCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----CH---HHHHHHHHHH-HHT
T ss_pred HHHHHHHHhccCCc----cc------cCCHHHHHHHHHhhhccCCCEEEEEeCcccc----ch---HHHHHHHHHH-hhc
Confidence 45667777766533 12 5899998888777777778988886 544 11 2222222332 223
Q ss_pred CcEEEEEccCCchHHHhccC
Q 046991 226 GKTIILTIHQPGFRILELFD 245 (612)
Q Consensus 226 g~tii~~~H~~~~~i~~~~D 245 (612)
+..+|.++=..+.++.++.+
T Consensus 243 ~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 243 GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp TCEEEEECHHHHHHHHSCSS
T ss_pred CCcEEEEeccchhhHHHHHh
Confidence 54555555443444554443
No 496
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.49 E-value=0.1 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 046991 63 EITAIAGPSGAGKTTLLEILAGKIS 87 (612)
Q Consensus 63 e~~aIlG~nGsGKTTLL~~L~G~~~ 87 (612)
-.++++|.+|+|||||+|.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 4689999999999999999999763
No 497
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.73 E-value=0.036 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGK 85 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~ 85 (612)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999988754
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.32 E-value=0.085 Score=56.57 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 499
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.26 E-value=0.066 Score=55.73 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 046991 64 ITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 64 ~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.21 E-value=0.11 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 046991 60 RPGEITAIAGPSGAGKTTLLEILAGKI 86 (612)
Q Consensus 60 ~~Ge~~aIlG~nGsGKTTLL~~L~G~~ 86 (612)
.+..-+.|.||+|+|||||.+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455678899999999999999998763
Done!