BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046992
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 157/378 (41%), Gaps = 64/378 (16%)
Query: 1 ELFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF 60
+L G S IS ++L+ L + NQ G IPP LKSL
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---------------------PLKSLQ 272
Query: 61 ELDLSLNQLSGSI--FLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLI 118
L L+ N+ +G I FLS + + + N G + PF G+ + L L L+SN
Sbjct: 273 YLSLAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 119 GHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLD--TNQF 176
G +P + RG L+ L L N SG LP S+ NL+ S L LD +N F
Sbjct: 332 GELPMDTLLKMRG-----------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 177 TSYV-PNICHS--GLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLSHNN 233
+ + PN+C + L++ NN F G IP +L NC LS N
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-----------SELVSLHLSFNY 429
Query: 234 FYNELSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSL 286
+ S+ +KL L IP EL + + L L N L+G +P GL++
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 287 IQLEYLDLSANSFSQSIP------ELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNE 340
L ++ LS N + IP E +L + N+ S IP L +D++ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 341 LEGSTPNSAVFRDAPLAA 358
G+ P + + +AA
Sbjct: 550 FNGTIPAAMFKQSGKIAA 567
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 165/405 (40%), Gaps = 56/405 (13%)
Query: 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYF--FIGQL---------KSLFE 61
+ L+ L L FN+ G++P LT+L + T + F G + +L E
Sbjct: 342 MRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 62 LDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHI 121
L L N +G I + S +++ N LSGTI +G+L+ L DL+L N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 122 PN------------LRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLT-LSF 168
P L N G +PS + N TNL + L +N L+G +P IG L L+
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 169 LVLDTNQFTSYVP---NICHSGLLEKYTNGNNRFLGPIPKSL-----RNCISXXXXXXXX 220
L L N F+ +P C S + N F G IP ++ + +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNT--NLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 221 XXXXXXXDLSHNNFYNELSSNWAKCAKLGSLNFSIPMEL-----GKLNSPTK-------- 267
+ N L + +L L+ P + G SPT
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 268 LTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELC------NLLNTAYNNLSSLI 321
L + N LSG++P+ + S+ L L+L N S SIP+ N+L+ + N L I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 322 PKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLC 366
P+ + L+ ID+S N L G P F P A N LC
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 45/332 (13%)
Query: 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------VYFFIGQLK 57
G I P +SN S+L L+L FN L G IP +G L+ L+ WL + + +K
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR-DLKLWLNMLEGEIPQELMYVK 466
Query: 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL 117
+L L L N L+G I +N + + + +N L+G I +IG L +L L+L++N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 118 IGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI----GNLTLSFLVLDT 173
G+I P+ +G+ +L L L N +G++P ++ G + +F+
Sbjct: 527 SGNI------------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA--- 571
Query: 174 NQFTSYVPNI-----CHSG--LLE---KYTNGNNRFLGPIPKSLRNCI--SXXXXXXXXX 221
+ Y+ N CH LLE + NR P ++ + +
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 222 XXXXXXDLSHNNFYNELSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQ 274
D+S+N + L LN SIP E+G L L L N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 275 LSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL 306
L G +P+ +++L L +DLS N+ S IPE+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 136/315 (43%), Gaps = 47/315 (14%)
Query: 55 QLKSLFELDLSLNQLSGSIFLSWV---TLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQ 111
+L SL LDLS N +SG+ + WV + I N +SG + + +L L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206
Query: 112 LNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLT-LSFLV 170
++SN IP L G+ + L+ L + N LSG +I T L L
Sbjct: 207 VSSNNFSTGIPFL-------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 171 LDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLS 230
+ +NQF +P + L+ + N+F G IP L DLS
Sbjct: 254 ISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACD----------TLTGLDLS 302
Query: 231 HNNFYNELSSNWAKCAKLGSL-----NFS--IPME-LGKLNSPTKLTLRENQLSGHLPRG 282
N+FY + + C+ L SL NFS +PM+ L K+ L L N+ SG LP
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 283 LNSL-IQLEYLDLSANSFSQSI-PELC----NLLNTAY---NNLSSLIPKCFEKMHGLSG 333
L +L L LDLS+N+FS I P LC N L Y N + IP L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 334 IDMSYNELEGSTPNS 348
+ +S+N L G+ P+S
Sbjct: 423 LHLSFNYLSGTIPSS 437
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 122/315 (38%), Gaps = 53/315 (16%)
Query: 58 SLFELDLSLNQLSGSI--FLSWVTLSNFSRVYIYDNLLS--GTISPFIGNLTSLVDLQLN 113
SL LDLS N LSG + S + S + + N L G +S + L SL L L+
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 114 SNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDT 173
+N + G N L G L + L + N +SG + +S + L FL + +
Sbjct: 160 ANSISG------ANVVGWVLSDGCGEL---KHLAISGNKISGDVDVSRC-VNLEFLDVSS 209
Query: 174 NQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLSHNN 233
N F++ +P + L+ N+ G +++ C
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL-------------------- 249
Query: 234 FYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQ-LEYL 292
K + S F P+ L S L+L EN+ +G +P L+ L L
Sbjct: 250 ----------KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 293 DLSANSFSQSIPEL------CNLLNTAYNNLSSLIP-KCFEKMHGLSGIDMSYNELEGST 345
DLS N F ++P L + NN S +P KM GL +D+S+NE G
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 346 PNSAVFRDAPLAALQ 360
P S A L L
Sbjct: 360 PESLTNLSASLLTLD 374
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKV-----TCTTWLVYFFIGQLKS 58
G SP N + +L + +N L G IP EIG + +L + + + +G L+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQ-LNSNQL 117
L LDLS N+L G I + L+ + + + +N LSG I P +G + + LN+ L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNNPGL 740
Query: 118 IGH-IPNLRQNQFRGF 132
G+ +P + G+
Sbjct: 741 CGYPLPRCDPSNADGY 756
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 1 ELFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKV-----TCTTWLVYFFIGQ 55
+L G I +SN + L ++ L N+L G+IP IG L +L + + + +G
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 56 LKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFI------------GN 103
+SL LDL+ N +G+I + S I N ++G +I GN
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 104 LTSLVDLQLNS-NQLIGHIP-NLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI 161
L ++ N+L P N+ + G + N ++ L + +N LSG +P I
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 162 GNLTLSFLV-LDTNQFTSYVPN 182
G++ F++ L N + +P+
Sbjct: 653 GSMPYLFILNLGHNDISGSIPD 674
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
Query: 1 ELFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF 60
++ G I ++ +L L L L N+L G+IP + LT L
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT------------------- 707
Query: 61 ELDLSLNQLSGSI 73
E+DLS N LSG I
Sbjct: 708 EIDLSNNNLSGPI 720
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 143/363 (39%), Gaps = 69/363 (19%)
Query: 52 FIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQ 111
F+G +L LD+S N+LSG + T + + I N G I P L SL L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 272
Query: 112 LNSNQLIGHIPN-------------LRQNQFRGFLPSSIG-------------------- 138
L N+ G IP+ L N F G +P G
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 139 -----NLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLD--TNQFTSYV-PNICHS--GL 188
+ L+ L L N SG LP S+ NL+ S L LD +N F+ + PN+C +
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 189 LEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKL 248
L++ NN F G IP +L NC LS N + S+ +KL
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNC-----------SELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 249 GSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301
L IP EL + + L L N L+G +P GL++ L ++ LS N +
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 302 SIP------ELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAP 355
IP E +L + N+ S IP L +D++ N G+ P + +
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 356 LAA 358
+AA
Sbjct: 562 IAA 564
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 165/405 (40%), Gaps = 56/405 (13%)
Query: 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYF--FIGQL---------KSLFE 61
+ L+ L L FN+ G++P LT+L + T + F G + +L E
Sbjct: 339 MRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 62 LDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHI 121
L L N +G I + S +++ N LSGTI +G+L+ L DL+L N L G I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 122 PN------------LRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLT-LSF 168
P L N G +PS + N TNL + L +N L+G +P IG L L+
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 169 LVLDTNQFTSYVP---NICHSGLLEKYTNGNNRFLGPIPKSL-----RNCISXXXXXXXX 220
L L N F+ +P C S + N F G IP ++ + +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLN--TNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 221 XXXXXXXDLSHNNFYNELSSNWAKCAKLGSLNFSIPMEL-----GKLNSPT--------K 267
+ N L + +L L+ P + G SPT
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 268 LTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELC------NLLNTAYNNLSSLI 321
L + N LSG++P+ + S+ L L+L N S SIP+ N+L+ + N L I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 322 PKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLC 366
P+ + L+ ID+S N L G P F P A N LC
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 45/332 (13%)
Query: 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------VYFFIGQLK 57
G I P +SN S+L L+L FN L G IP +G L+ L+ WL + + +K
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR-DLKLWLNMLEGEIPQELMYVK 463
Query: 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL 117
+L L L N L+G I +N + + + +N L+G I +IG L +L L+L++N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 118 IGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI----GNLTLSFLVLDT 173
G+I P+ +G+ +L L L N +G++P ++ G + +F+
Sbjct: 524 SGNI------------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA--- 568
Query: 174 NQFTSYVPNI-----CHSG--LLE---KYTNGNNRFLGPIPKSLRNCI--SXXXXXXXXX 221
+ Y+ N CH LLE + NR P ++ + +
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 222 XXXXXXDLSHNNFYNELSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQ 274
D+S+N + L LN SIP E+G L L L N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 275 LSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL 306
L G +P+ +++L L +DLS N+ S IPE+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 136/315 (43%), Gaps = 47/315 (14%)
Query: 55 QLKSLFELDLSLNQLSGSIFLSWV---TLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQ 111
+L SL LDLS N +SG+ + WV + I N +SG + + +L L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 203
Query: 112 LNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLT-LSFLV 170
++SN IP L G+ + L+ L + N LSG +I T L L
Sbjct: 204 VSSNNFSTGIPFL-------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 171 LDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLS 230
+ +NQF +P + L+ + N+F G IP L DLS
Sbjct: 251 ISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACD----------TLTGLDLS 299
Query: 231 HNNFYNELSSNWAKCAKLGSL-----NFS--IPME-LGKLNSPTKLTLRENQLSGHLPRG 282
N+FY + + C+ L SL NFS +PM+ L K+ L L N+ SG LP
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 283 LNSL-IQLEYLDLSANSFSQSI-PELC----NLLNTAY---NNLSSLIPKCFEKMHGLSG 333
L +L L LDLS+N+FS I P LC N L Y N + IP L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 334 IDMSYNELEGSTPNS 348
+ +S+N L G+ P+S
Sbjct: 420 LHLSFNYLSGTIPSS 434
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 122/315 (38%), Gaps = 53/315 (16%)
Query: 58 SLFELDLSLNQLSGSI--FLSWVTLSNFSRVYIYDNLLS--GTISPFIGNLTSLVDLQLN 113
SL LDLS N LSG + S + S + + N L G +S + L SL L L+
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 114 SNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDT 173
+N + G N L G L + L + N +SG + +S + L FL + +
Sbjct: 157 ANSISG------ANVVGWVLSDGCGEL---KHLAISGNKISGDVDVSRC-VNLEFLDVSS 206
Query: 174 NQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLSHNN 233
N F++ +P + L+ N+ G +++ C
Sbjct: 207 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL-------------------- 246
Query: 234 FYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQ-LEYL 292
K + S F P+ L S L+L EN+ +G +P L+ L L
Sbjct: 247 ----------KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 293 DLSANSFSQSIPEL------CNLLNTAYNNLSSLIP-KCFEKMHGLSGIDMSYNELEGST 345
DLS N F ++P L + NN S +P KM GL +D+S+NE G
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 346 PNSAVFRDAPLAALQ 360
P S A L L
Sbjct: 357 PESLTNLSASLLTLD 371
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKV-----TCTTWLVYFFIGQLKS 58
G SP N + +L + +N L G IP EIG + +L + + + +G L+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQ-LNSNQL 117
L LDLS N+L G I + L+ + + + +N LSG I P +G + + LN+ L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNNPGL 737
Query: 118 IGH-IPNLRQNQFRGF 132
G+ +P + G+
Sbjct: 738 CGYPLPRCDPSNADGY 753
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 1 ELFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKV-----TCTTWLVYFFIGQ 55
+L G I +SN + L ++ L N+L G+IP IG L +L + + + +G
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 56 LKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFI------------GN 103
+SL LDL+ N +G+I + S I N ++G +I GN
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 104 LTSLVDLQLNS-NQLIGHIP-NLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI 161
L ++ N+L P N+ + G + N ++ L + +N LSG +P I
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 162 GNLTLSFLV-LDTNQFTSYVPN 182
G++ F++ L N + +P+
Sbjct: 650 GSMPYLFILNLGHNDISGSIPD 671
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
Query: 1 ELFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF 60
++ G I ++ +L L L L N+L G+IP + LT L
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT------------------- 704
Query: 61 ELDLSLNQLSGSI 73
E+DLS N LSG I
Sbjct: 705 EIDLSNNNLSGPI 717
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 6 ISPQISNLSKLEYLYLP-FNQLFGKIPPEIGLLTHLKV-----TCTTWLVYFFIGQLKSL 59
I ++NL L +LY+ N L G IPP I LT L T + + F+ Q+K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 60 FELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSL-VDLQLNSNQLI 118
LD S N LSG++ S +L N + N +SG I G+ + L + ++ N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 119 GHIP-----------NLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLS 154
G IP +L +N G G+ N +K+ L N+L+
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 105/272 (38%), Gaps = 58/272 (21%)
Query: 66 LNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLR 125
+N L G I + L+ +YI +SG I F+ + +LV L + N L
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-------- 137
Query: 126 QNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICH 185
G LP SI +L NL + N +SG++P S G+
Sbjct: 138 ----SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF--------------------- 172
Query: 186 SGLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAK- 244
S L T NR G IP + N DLS N + S +
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFAN------------LNLAFVDLSRNMLEGDASVLFGSD 220
Query: 245 --CAKLGSLNFSIPMELGKL---NSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSF 299
K+ S+ +LGK+ + L LR N++ G LP+GL L L L++S N+
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 300 SQSIPELCNLLN---TAYNN----LSSLIPKC 324
IP+ NL +AY N S +P C
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 121/295 (41%), Gaps = 36/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 8 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 67
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 68 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L +NQ T P + + LE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFSSNQVTDLKP-LANLTTLE 176
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 233
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 234 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 249 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 304
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Query: 157 LPLS 160
PL+
Sbjct: 365 TPLA 368
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 121/295 (41%), Gaps = 36/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 8 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 67
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 68 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L +NQ T P + + LE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFSSNQVTDLKP-LANLTTLE 176
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 233
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 234 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 249 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 304
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Query: 157 LPLS 160
PL+
Sbjct: 365 TPLA 368
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 121/295 (41%), Gaps = 36/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 8 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 67
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 68 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L +NQ T P + + LE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLNFSSNQVTDLKP-LANLTTLE 176
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 233
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 234 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 249 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 304
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Query: 157 LPLS 160
PL+
Sbjct: 365 TPLA 368
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 120/295 (40%), Gaps = 37/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 12 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 71
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 72 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 124
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L NQ T P + + LE
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFG-NQVTDLKP-LANLTTLE 179
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 180 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 236
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 237 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 251
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 252 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 307
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 308 KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL 367
Query: 157 LPLS 160
PL+
Sbjct: 368 TPLA 371
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 120/295 (40%), Gaps = 37/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 13 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 72
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 73 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 125
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L NQ T P + + LE
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFG-NQVTDLKP-LANLTTLE 180
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 237
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 238 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 253 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 308
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 368
Query: 157 LPLS 160
PL+
Sbjct: 369 TPLA 372
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 259 LGKLNSPTKLTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIPE-----LCNL--L 310
L +L + T L L NQL LP G+ + L L+ L L N QS+P+ L NL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYL 138
Query: 311 NTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE 342
N A+N L SL F+K+ L+ +D+SYN+L+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 261 KLNSPTKLTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIPE-----LCNL--LNT 312
KL + +L L ENQL LP G+ + L L YL+L+ N QS+P+ L NL L+
Sbjct: 107 KLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDL 164
Query: 313 AYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFR 352
+YN L SL F+K+ L + + N+L+ S P+ R
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 203
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 120/295 (40%), Gaps = 37/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 8 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 67
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 68 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L NQ T P + + LE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLNFG-NQVTDLKP-LANLTTLE 175
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 232
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 233 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 248 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 303
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL 363
Query: 157 LPLS 160
PL+
Sbjct: 364 TPLA 367
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 120/295 (40%), Gaps = 37/295 (12%)
Query: 22 PFNQLFGKIPPEIGLLTHL-KVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
P NQ+F + T L K T + + Q+ +L L + + G +L+ +T
Sbjct: 8 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 67
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFR 130
NFS + D I+P + NLT LVD+ +N+NQ+ P L NQ
Sbjct: 68 INFSNNQLTD------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLE 190
P + NLTNL +L L N +S LS G +L L NQ T P + + LE
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLNFG-NQVTDLKP-LANLTTLE 175
Query: 191 KYTNGNNRFLG-PIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAKCAKLG 249
+ +N+ + L N S L++ +ELS N + +G
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIG 232
Query: 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304
+ L L + T L L NQ+S P L+ L +L L L AN S P
Sbjct: 233 T--------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 39/184 (21%)
Query: 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLF---ELDLSL 66
++ L+ LE L NQ+ P +G+LT+L IG L SL +LDL+
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 67 NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--IGHIPNL 124
NQ+S LS L+ + + + N +S ISP G LT+L +L+LN NQL I I NL
Sbjct: 248 NQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG-LTALTNLELNENQLEDISPISNL 303
Query: 125 RQ--------NQFRGFLP--------------------SSIGNLTNLRKLFLRHNNLSGS 156
+ N P SS+ NLTN+ L HN +S
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 363
Query: 157 LPLS 160
PL+
Sbjct: 364 TPLA 367
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 23 FNQLFGKIPPEIGLLT--HLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
N + G + E+ +L H +T T WL+ + L E+DLS N+L ++ +V +
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTDTAWLLNY-----PGLVEVDLSYNELEKIMYHPFVKM 277
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL 140
R+YI +N L ++ + + +L L L+ N L+ H+ Q QF
Sbjct: 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQF----------- 323
Query: 141 TNLRKLFLRHNN---LSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGL 188
L L+L HN+ L S ++ NLTLS D N + N+ +
Sbjct: 324 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 18/113 (15%)
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP-------------NLRQN 127
+N +Y++DN ++ +L +L +L L SNQL G +P +L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 128 QFRGFLPSSI-GNLTNLRKLFLRHNNLSGSLPLSIGNLT-LSFLVLDTNQFTS 178
Q LPS++ L +L++LF+ N L+ LP I LT L+ L LD NQ S
Sbjct: 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 267 KLTLRENQLSGHLPRGL-NSLIQLEYLDLSANSF----SQSIPELCNL--LNTAYNNLSS 319
+L L NQL G LP G+ +SL QL LDL N S L +L L N L+
Sbjct: 68 ELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 320 LIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPL--AALQKNKRLCSNVKGLDLAKW 377
L P+ E++ L+ + + N+L+ S P+ A R + L A L N C + L W
Sbjct: 127 L-PRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184
Query: 378 FFDFGRTKSGSQEQGINNLNTS 399
D + +N+ +++
Sbjct: 185 VADHTSIAMRWDGKAVNDPDSA 206
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 267 KLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ-------SIPELCNLLNTAYNNLSS 319
+L L L+G LP G+ + L+ L L+ANSF Q S P L +L
Sbjct: 281 ELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLD 339
Query: 320 LIPKCFEKMHGLSGIDMSYNELEGS 344
L +C EK+ L +D+S++++E S
Sbjct: 340 LGTRCLEKLENLQKLDLSHSDIEAS 364
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 258 ELGKLNSPTKLTLRENQLSGHL------PRGLNSLIQLEYLDLSANSFSQSIPELCNL-- 309
+L ++N+ + +LR+ + G++ R L L L+ LDLS + S + CNL
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS--DCCNLQL 371
Query: 310 --------LNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS 348
LN +YN L + F++ L +D+++ L P+S
Sbjct: 372 KNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 23 FNQLFGKIPPEIGLLT--HLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80
N + G + E+ +L H +T T WL+ + L E+DLS N+L ++ +V +
Sbjct: 217 INVVRGPVNVELTILKLQHNNLTDTAWLLNY-----PGLVEVDLSYNELEKIMYHPFVKM 271
Query: 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL 140
R+YI +N L ++ + + +L L L+ N L+ ++ +NQ
Sbjct: 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL----HVERNQ---------PQF 317
Query: 141 TNLRKLFLRHNN---LSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGL 188
L L+L HN+ L S ++ NLTLS D N + N+ +
Sbjct: 318 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 368
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 28/132 (21%)
Query: 267 KLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPK--- 323
+L L L G LP G+ L L+ L LS N F Q LC + + +L+ L +
Sbjct: 279 ELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQ----LCQISAANFPSLTHLYIRGNV 333
Query: 324 --------CFEKMHGLSGIDMSYNELEGSTPNSAVFR------------DAPLAALQKNK 363
C EK+ L +D+S+N++E S S + + PL +
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 364 RLCSNVKGLDLA 375
+ C ++ LDLA
Sbjct: 394 KECPQLELLDLA 405
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 281 RGLNSLIQLEYLDLSANSFS-QSIPELCNL----LNTAYNNLSSLIPKCFEKMHGLSGID 335
+ +SL ++ ++DLS NS + SI L +L LN A N+++ + P+ + S I+
Sbjct: 491 QAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTIN 550
Query: 336 MSYNELEGSTPN 347
+S+N L+ + N
Sbjct: 551 LSHNPLDCTCSN 562
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 241 NWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFS 300
N A C+ L + IP +L ++ T L L NQL P QL LD NS S
Sbjct: 7 NVADCSHLKLTH--IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS 62
Query: 301 QSIPELCNL------LNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE 342
+ PELC + LN +N LS + + F L+ +D+ N +
Sbjct: 63 KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIH 110
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 254 SIPMELGKLNSPTKLTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIPE------- 305
S+P G +S T+L L N+L LP G+ + L QL L LS N QS+P+
Sbjct: 21 SVPT--GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLT 76
Query: 306 LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQK---- 361
+L N L SL F+K+ L + + N+L+ S P+ R L +LQK
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDR---LTSLQKIWLH 132
Query: 362 -NKRLCSNVKGLDLAKWFFDFGRTKSGSQEQGINNLNTSG 400
N CS + L++W K+ +EQG + SG
Sbjct: 133 TNPWDCSCPRIDYLSRWL-----NKNSQKEQGSAKCSGSG 167
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 48 LVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSL 107
L + +L L +L LS NQ+ + L+ + +Y+++N L + LT L
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102
Query: 108 VDLQLNSNQLIGHIPNLRQNQFRGFLPSSI-GNLTNLRKLFLRHNNLSGSLP 158
+L L++NQL +P I LT+L+K++L N S P
Sbjct: 103 KELALDTNQLKS-------------VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 260 GKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ-------SIPELCNLLNT 312
G+L KL L+ NQL+G P ++ L L N + + +L LN
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL-KTLNL 109
Query: 313 AYNNLSSLIPKCFEKMHGLSGIDMSYN 339
N +S ++P FE ++ L+ ++++ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 268 LTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIP-----ELCNL----LNTAYNNL 317
L L NQL+ LP G+ + L QL+ L L N +S+P L L LNT N L
Sbjct: 88 LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNT--NQL 143
Query: 318 SSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQ--KNKRLCSNVKGLDLA 375
S+ F+K+ L + +S N+L+ S P+ A R L + N+ CS + L L+
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLS 202
Query: 376 KWF 378
+W
Sbjct: 203 QWI 205
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 32/146 (21%)
Query: 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGS 72
L+KL +L L +NQL L L L L L+ NQL+
Sbjct: 58 LTKLTWLNLDYNQL-------------------QTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 73 IFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132
+ L+ ++Y+ N L S LT L +L+LN+NQL IP
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIP---------- 147
Query: 133 LPSSIGNLTNLRKLFLRHNNLSGSLP 158
+ LTNL+ L L N L S+P
Sbjct: 148 -AGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 42/189 (22%)
Query: 135 SSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFT----------SYVPNIC 184
+ I LT L KL NN++ +L LS N L++L D+N+ T +Y+ C
Sbjct: 58 TGIEKLTGLTKLICTSNNIT-TLDLS-QNTNLTYLACDSNKLTNLDVTPLTKLTYLN--C 113
Query: 185 HSGLLEKYTNGNNRFLGPIPKSLRNCISXXXXXXXXXXXXXXXDLSHNNFYNELSSNWAK 244
+ L K N L + RN ++ D+SHN EL + K
Sbjct: 114 DTNKLTKLDVSQNPLLTYL-NCARNTLTEI-------------DVSHNTQLTELDCHLNK 159
Query: 245 CAKLGSLNFSIPMELGKL----NSPTKLTLRENQLSGHL--------PRGLNSLIQLEYL 292
K+ L+ + +L L N T+L + +N+L L LN IQL +L
Sbjct: 160 --KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFL 217
Query: 293 DLSANSFSQ 301
D S+N ++
Sbjct: 218 DCSSNKLTE 226
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN 163
LP+ I NL+NLR L L HN L+ SLP +G+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 266 TKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCN------LLNTAYNNLSS 319
T L L NQL QL LD+ N+ S+ PELC +LN +N LS
Sbjct: 33 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 92
Query: 320 LIPKCFEKMHGLSGIDMSYNELEGSTPNSAV 350
L K F L+ + + N ++ N V
Sbjct: 93 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 123
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 266 TKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCN------LLNTAYNNLSS 319
T L L NQL QL LD+ N+ S+ PELC +LN +N LS
Sbjct: 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87
Query: 320 LIPKCFEKMHGLSGIDMSYNELEGSTPNSAV 350
L K F L+ + + N ++ N V
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 266 TKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCN------LLNTAYNNLSS 319
T L L NQL QL LD+ N+ S+ PELC +LN +N LS
Sbjct: 38 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 97
Query: 320 LIPKCFEKMHGLSGIDMSYNELE 342
L K F L+ + + N ++
Sbjct: 98 LSDKTFAFCTNLTELHLMSNSIQ 120
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 26/157 (16%)
Query: 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQ--LKSLFELDLSLNQLSG 71
+ L L P NQ+F P+ L ++ V + Q L+S+ +L ++ +++
Sbjct: 3 ATLATLPAPINQIF----PDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVAS 58
Query: 72 SIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131
+ ++T N + + N ++ ISP NL L +L + +N++
Sbjct: 59 IQGIEYLT--NLEYLNLNGNQITD-ISPL-SNLVKLTNLYIGTNKITD------------ 102
Query: 132 FLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSF 168
S++ NLTNLR+L+L +N+S PL+ NLT +
Sbjct: 103 --ISALQNLTNLRELYLNEDNISDISPLA--NLTKXY 135
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 101 IGNLTSLVDLQLNSNQL--IGHIPNLRQ--------NQFRGFLPSSIGNLTNLRKLFLRH 150
+ +LT L L + SNQ+ I + NL Q NQ IG LTNL LFL
Sbjct: 261 VKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 151 NNLSGSLPLS 160
N+++ PL+
Sbjct: 321 NHITDIRPLA 330
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 38/209 (18%)
Query: 6 ISPQISNLSKLEYLYLPFNQLFGKIPP--EIGLLTHLKVTCTTWLVYFFIGQLKSLFELD 63
ISP ++NL+K L L N + P L +L VT + I L L+ L
Sbjct: 125 ISP-LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLS 183
Query: 64 LSLNQLSG-------------SIFLSWVT----LSNFSRV---YIYDNLLSGTISPFIGN 103
L+ NQ+ + +++ +T ++N +R+ I +N ++ +SP N
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITD-LSPL-AN 241
Query: 104 LTSLVDLQLNSNQL--IGHIPNLRQ--------NQFRGFLPSSIGNLTNLRKLFLRHNNL 153
L+ L L++ +NQ+ I + +L + NQ S + NL+ L LFL +N L
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQL 299
Query: 154 SGSLPLSIGNLT-LSFLVLDTNQFTSYVP 181
IG LT L+ L L N T P
Sbjct: 300 GNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 268 LTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIP-----ELCNL----LNTAYNNL 317
L L NQL+ LP G+ + L QL+ L L N +S+P L L LNT N L
Sbjct: 88 LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNT--NQL 143
Query: 318 SSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQ--KNKRLCSNVKGLDLA 375
S+ F+K+ L + +S N+L+ S P+ A R L + N+ CS + L L+
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS 202
Query: 376 KWF 378
+W
Sbjct: 203 QWI 205
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 32/146 (21%)
Query: 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGS 72
L+KL +L L +NQL L L L L L+ NQL+
Sbjct: 58 LTKLTWLNLDYNQL-------------------QTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 73 IFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132
+ L+ ++Y+ N L S LT L +L+LN+NQL IP
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIP---------- 147
Query: 133 LPSSIGNLTNLRKLFLRHNNLSGSLP 158
+ LTNL+ L L N L S+P
Sbjct: 148 -AGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIP----------NLRQNQFRGFLPSSIGNLT 141
L+ G+++PF L S+VD SN+ + H+P +L QN I L+
Sbjct: 20 LIVGSMTPFSNELESMVDY---SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLS 76
Query: 142 NLRKLFLRHNNL 153
LR L L HN +
Sbjct: 77 ELRVLRLSHNRI 88
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 14/108 (12%)
Query: 261 KLNSPTKLTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIP-----ELCNLLNTA- 313
+L S T+L L N+L LP G+ N L L YL+LS N QS+P +L L A
Sbjct: 50 ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELAL 107
Query: 314 -YNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQ 360
N L SL F+K+ L + + N+L+ S P+ R L +LQ
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR---LTSLQ 151
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 259 LGKLNSPTKLTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIPE-----LCNL--L 310
L +L + T L L NQL LP G+ + L L+ L L N QS+P+ L NL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYL 138
Query: 311 NTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE 342
+N L SL F+K+ L+ +D+ N+L+
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 55 QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNS 114
+L +L EL L NQL + L+N + +Y+Y N L LT+L L L++
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 115 NQLIGHIPNLRQNQFRGFLPSSI-GNLTNLRKLFLRHNNLSGSLP 158
NQL LP + LT L++L L N L S+P
Sbjct: 167 NQLQS-------------LPEGVFDKLTQLKQLSLNDNQLK-SVP 197
>pdb|3H2Z|A Chain A, The Crystal Structure Of Mannitol-1-Phosphate
Dehydrogenase From Shigella Flexneri
Length = 382
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 114 SNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDT 173
+ QL GH+ N + ++ +G + + + + + + PL + T S ++D
Sbjct: 127 TTQLKGHVXNALPEDAKAWVEEHVGFVDSAVDRIVPPSASATNDPLEVTVETFSEWIVDK 186
Query: 174 NQFTSYVPNI 183
QF +PNI
Sbjct: 187 TQFKGALPNI 196
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 268 LTLRENQLSGHLPRGL-NSLIQLEYLDLSANSFSQSIP-----ELCNL--LNTAYNNLSS 319
L L +N+L LP G+ L LE L ++ N Q++P +L NL L N L S
Sbjct: 66 LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 320 LIPKCFEKMHGLSGIDMSYNELE 342
L P+ F+ + L+ + + YNEL+
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQ 146
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 238 LSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSAN 297
L + W KL +L + +L L +L L NQL PR +SL +L YL L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNL---AELRLDRNQLKSLPPRVFDSLTKLTYLSL--- 140
Query: 298 SFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLA 357
YN L SL F+K+ L + + N+L+ P A + L
Sbjct: 141 ---------------GYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELK 184
Query: 358 ALQ 360
L+
Sbjct: 185 TLK 187
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 61 ELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL--- 117
+LDL N+LS ++ L+ +Y+ DN L + L +L L + N+L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 118 -IG------HIPNLR--QNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI 161
IG ++ LR +NQ + P +LT L L L +N L SLP +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL 117
SL EL L N+++ S L+N +++ + N +S + + N L +L LN+N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 118 IGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSG 155
+ +P + + ++ ++L +NN+S
Sbjct: 253 VK-------------VPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL 117
SL EL L N+++ S L+N +++ + N +S + + N L +L LN+N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 118 IGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSG 155
+ +P + + ++ ++L +NN+S
Sbjct: 253 VK-------------VPGGLADHKYIQVVYLHNNNISA 277
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 269 TLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ------SIPELCNLLNTAYNNLSSLIP 322
+ ++N LS N L +LDLS Q LLN ++NNL L
Sbjct: 454 SFKDNTLSNVFANTTN----LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 509
Query: 323 KCFEKMHGLSGIDMSYNELEGS 344
+ +++ LS +D S+N +E S
Sbjct: 510 SHYNQLYSLSTLDCSFNRIETS 531
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 269 TLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ------SIPELCNLLNTAYNNLSSLIP 322
+ ++N LS N L +LDLS Q LLN ++NNL L
Sbjct: 459 SFKDNTLSNVFANTTN----LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514
Query: 323 KCFEKMHGLSGIDMSYNELEGS 344
+ +++ LS +D S+N +E S
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETS 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,428,305
Number of Sequences: 62578
Number of extensions: 456602
Number of successful extensions: 1307
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 218
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)