Query 046992
Match_columns 404
No_of_seqs 298 out of 3058
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-41 3.6E-46 359.3 24.8 368 2-369 152-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.1E-39 6.7E-44 342.1 25.9 363 2-364 81-487 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.4E-34 3E-39 267.4 1.5 354 15-381 79-467 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 3E-32 6.5E-37 241.8 -8.5 349 8-366 62-542 (565)
5 KOG0444 Cytoskeletal regulator 100.0 2.3E-31 5E-36 248.1 -4.9 341 12-370 5-380 (1255)
6 KOG4194 Membrane glycoprotein 100.0 3.7E-30 8.1E-35 238.2 2.4 310 8-342 96-452 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 1E-30 2.2E-35 232.1 -7.1 349 5-363 105-562 (565)
8 KOG0444 Cytoskeletal regulator 99.9 7.6E-29 1.6E-33 231.4 -3.8 294 5-346 46-379 (1255)
9 KOG0618 Serine/threonine phosp 99.9 5.3E-26 1.1E-30 221.0 0.8 362 12-380 43-504 (1081)
10 PLN03210 Resistant to P. syrin 99.9 2E-22 4.4E-27 214.9 23.8 327 7-365 551-906 (1153)
11 KOG0618 Serine/threonine phosp 99.9 6.8E-25 1.5E-29 213.3 -6.0 331 2-341 56-488 (1081)
12 PRK15387 E3 ubiquitin-protein 99.9 6.4E-21 1.4E-25 190.5 17.9 259 14-347 201-463 (788)
13 PLN03210 Resistant to P. syrin 99.8 1.2E-19 2.5E-24 193.9 23.6 310 3-340 577-904 (1153)
14 KOG4237 Extracellular matrix p 99.8 3.3E-23 7.2E-28 184.2 -6.5 265 53-370 87-364 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 7.3E-20 1.6E-24 183.0 16.3 235 58-366 223-459 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.6E-24 182.3 15.7 244 14-342 178-428 (754)
17 KOG4237 Extracellular matrix p 99.8 1.2E-21 2.6E-26 174.3 -5.1 273 14-344 67-361 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.6E-23 175.2 12.3 245 57-366 178-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6E-19 1.3E-23 163.9 -0.2 266 53-364 19-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.4E-23 162.2 0.2 255 5-301 14-292 (319)
21 KOG0617 Ras suppressor protein 99.7 2.4E-19 5.1E-24 142.4 -4.8 164 12-210 31-195 (264)
22 KOG0617 Ras suppressor protein 99.7 5.3E-19 1.1E-23 140.5 -4.6 180 138-366 30-213 (264)
23 KOG0532 Leucine-rich repeat (L 99.3 7.5E-14 1.6E-18 130.5 -4.2 194 55-297 73-270 (722)
24 COG4886 Leucine-rich repeat (L 99.3 7E-12 1.5E-16 120.1 8.7 197 61-305 97-295 (394)
25 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 128.9 -4.1 102 83-199 77-178 (722)
26 COG4886 Leucine-rich repeat (L 99.2 3E-11 6.5E-16 115.7 8.2 198 85-348 97-296 (394)
27 KOG1909 Ran GTPase-activating 99.2 2E-12 4.4E-17 114.4 -1.3 249 52-342 25-311 (382)
28 KOG1259 Nischarin, modulator o 99.2 7.2E-12 1.6E-16 108.8 2.0 225 102-364 179-411 (490)
29 PLN03150 hypothetical protein; 99.2 7.9E-11 1.7E-15 118.3 9.0 112 264-376 419-538 (623)
30 KOG1909 Ran GTPase-activating 99.1 4.7E-12 1E-16 112.1 -2.4 246 9-299 25-310 (382)
31 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.5E-16 112.6 -0.7 192 9-235 116-314 (505)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3E-15 96.2 3.7 124 81-229 19-147 (175)
33 KOG1259 Nischarin, modulator o 99.0 4.1E-11 8.9E-16 104.1 -0.1 202 53-301 210-413 (490)
34 PLN03150 hypothetical protein; 99.0 9.8E-10 2.1E-14 110.5 9.2 105 59-175 420-526 (623)
35 KOG3207 Beta-tubulin folding c 99.0 4.3E-11 9.4E-16 108.9 -0.5 210 54-301 118-340 (505)
36 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.6E-15 94.6 3.9 126 53-195 15-148 (175)
37 KOG0531 Protein phosphatase 1, 98.9 1.7E-10 3.6E-15 110.9 -1.1 242 55-346 70-322 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.9 9.8E-10 2.1E-14 113.1 3.6 44 258-301 765-808 (889)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3.1E-14 111.9 4.3 124 13-151 522-652 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.3E-14 73.4 3.1 61 57-117 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 9.5E-10 2.1E-14 105.7 -0.5 129 53-200 91-221 (414)
42 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 71.2 3.3 61 14-93 1-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.7 1.4E-10 3.1E-15 111.7 -7.5 108 219-367 184-294 (1096)
44 KOG2982 Uncharacterized conser 98.4 3E-08 6.6E-13 86.4 -0.9 87 55-153 69-158 (418)
45 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-07 2.3E-12 82.1 -1.1 82 12-93 28-132 (388)
46 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.9E-13 98.5 -7.6 21 7-27 102-122 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.2 1.8E-08 3.8E-13 87.9 -7.1 182 105-340 185-374 (419)
48 KOG2120 SCF ubiquitin ligase, 98.1 4.6E-08 9.9E-13 85.4 -6.4 184 58-298 186-374 (419)
49 KOG4579 Leucine-rich repeat (L 98.1 1.1E-07 2.3E-12 73.7 -4.7 87 53-154 49-136 (177)
50 KOG2982 Uncharacterized conser 98.1 1.3E-06 2.8E-11 76.5 1.2 110 9-118 40-159 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.0 2.2E-06 4.8E-11 74.1 1.0 200 9-235 87-316 (388)
52 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.7E-10 65.8 6.0 88 136-232 59-150 (233)
53 KOG4579 Leucine-rich repeat (L 98.0 2.9E-07 6.2E-12 71.3 -4.2 110 57-182 27-141 (177)
54 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.3E-10 50.5 3.7 38 263-301 1-38 (44)
55 KOG3665 ZYG-1-like serine/thre 97.9 2E-06 4.4E-11 86.7 0.4 150 14-171 122-282 (699)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.7E-10 49.5 3.7 37 57-94 1-37 (44)
57 KOG1644 U2-associated snRNP A' 97.7 6.2E-05 1.3E-09 62.6 5.4 104 57-173 42-149 (233)
58 KOG2739 Leucine-rich acidic nu 97.6 2.5E-05 5.4E-10 67.5 1.7 69 48-118 56-129 (260)
59 PRK15386 type III secretion pr 97.5 0.00028 6.1E-09 66.2 7.8 21 10-31 48-68 (426)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.4E-10 78.0 0.8 105 57-176 122-232 (699)
61 PRK15386 type III secretion pr 97.2 0.00088 1.9E-08 62.9 7.1 32 329-362 156-187 (426)
62 KOG4341 F-box protein containi 96.9 2.9E-05 6.3E-10 71.3 -5.5 64 53-116 160-227 (483)
63 PF13306 LRR_5: Leucine rich r 96.9 0.0032 7E-08 49.6 6.7 60 53-114 8-67 (129)
64 KOG2123 Uncharacterized conser 96.8 3.2E-05 7E-10 67.3 -6.1 105 13-147 18-123 (388)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00068 1.5E-08 58.8 1.5 68 73-154 35-104 (260)
66 PF13306 LRR_5: Leucine rich r 96.6 0.0068 1.5E-07 47.8 6.3 107 8-150 6-112 (129)
67 KOG2123 Uncharacterized conser 96.0 0.00018 3.9E-09 62.8 -5.8 59 56-118 18-76 (388)
68 KOG1947 Leucine rich repeat pr 95.6 0.0017 3.7E-08 63.7 -2.0 230 55-299 186-439 (482)
69 PF00560 LRR_1: Leucine Rich R 95.4 0.0067 1.4E-07 31.4 0.8 20 58-78 1-20 (22)
70 KOG4341 F-box protein containi 95.3 0.00065 1.4E-08 62.7 -5.6 39 261-299 399-438 (483)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.0062 1.3E-07 31.6 -0.1 21 15-36 1-21 (22)
72 KOG4308 LRR-containing protein 94.4 0.00017 3.7E-09 70.0 -12.4 175 51-236 109-304 (478)
73 KOG0473 Leucine-rich repeat pr 93.9 0.0015 3.2E-08 55.8 -6.1 64 53-118 61-124 (326)
74 KOG1947 Leucine rich repeat pr 93.2 0.0074 1.6E-07 59.3 -3.7 60 139-198 241-306 (482)
75 PF13504 LRR_7: Leucine rich r 92.3 0.067 1.4E-06 25.7 0.8 17 14-31 1-17 (17)
76 KOG4308 LRR-containing protein 91.8 0.00092 2E-08 64.9 -11.7 190 59-276 89-303 (478)
77 KOG0473 Leucine-rich repeat pr 90.2 0.0067 1.5E-07 51.9 -6.6 88 53-155 38-125 (326)
78 KOG3864 Uncharacterized conser 89.3 0.069 1.5E-06 44.9 -1.2 75 15-89 102-184 (221)
79 smart00369 LRR_TYP Leucine-ric 88.2 0.44 9.6E-06 25.5 2.0 14 57-70 2-15 (26)
80 smart00370 LRR Leucine-rich re 88.2 0.44 9.6E-06 25.5 2.0 14 57-70 2-15 (26)
81 PF13516 LRR_6: Leucine Rich r 86.6 0.11 2.4E-06 27.4 -1.1 16 57-72 2-17 (24)
82 smart00369 LRR_TYP Leucine-ric 85.7 0.88 1.9E-05 24.3 2.3 14 263-276 2-15 (26)
83 smart00370 LRR Leucine-rich re 85.7 0.88 1.9E-05 24.3 2.3 14 263-276 2-15 (26)
84 KOG3864 Uncharacterized conser 84.6 0.12 2.7E-06 43.4 -2.2 36 262-297 150-186 (221)
85 KOG4242 Predicted myosin-I-bin 82.1 11 0.00023 36.3 9.0 102 14-118 165-281 (553)
86 smart00365 LRR_SD22 Leucine-ri 77.0 2.3 5E-05 22.9 1.8 15 328-342 1-15 (26)
87 smart00364 LRR_BAC Leucine-ric 76.3 2 4.3E-05 23.1 1.4 18 329-347 2-19 (26)
88 TIGR00864 PCC polycystin catio 74.6 1.3 2.8E-05 51.3 1.0 37 311-347 1-37 (2740)
89 smart00368 LRR_RI Leucine rich 69.0 4.3 9.4E-05 22.2 1.8 14 329-342 2-15 (28)
90 TIGR00864 PCC polycystin catio 54.1 9.6 0.00021 44.7 2.7 36 335-370 1-37 (2740)
91 KOG3763 mRNA export factor TAP 43.8 7.2 0.00016 38.2 -0.2 63 139-202 216-285 (585)
92 smart00367 LRR_CC Leucine-rich 42.8 19 0.00041 19.0 1.5 13 286-298 1-13 (26)
93 KOG3763 mRNA export factor TAP 36.4 18 0.0004 35.5 1.3 40 55-94 242-283 (585)
94 KOG4242 Predicted myosin-I-bin 31.1 2.5E+02 0.0055 27.5 7.7 39 262-300 439-481 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-41 Score=359.34 Aligned_cols=368 Identities=35% Similarity=0.467 Sum_probs=251.0
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
++|.+|..|+++++|++|++++|.+.+.+|..++++++|++|+++.+ .|..+.++++|++|++++|.+++.+|..
T Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh
Confidence 45677888888888888888888877777877888888888777542 4666777777777777777777777777
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc------------CCCCcccccCCccccCCCCCC
Q 046992 77 WVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN------------LRQNQFRGFLPSSIGNLTNLR 144 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------l~~n~~~~~~~~~~~~l~~L~ 144 (404)
+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+..|. +++|.+.+.+|..+..+++|+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 77777777777777777666777777777777777777776655542 555666656666666666666
Q ss_pred EEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCC--------------------
Q 046992 145 KLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGP-------------------- 202 (404)
Q Consensus 145 ~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~-------------------- 202 (404)
.|++++|.+.+..|..+.. ++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 6666666665555555555 555555555555554333 444444555555554444443
Q ss_pred ----CchhhhcCCCCC-------------ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE------------
Q 046992 203 ----IPKSLRNCISLT-------------TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------------ 253 (404)
Q Consensus 203 ----~~~~~~~l~~L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------------ 253 (404)
+|.++..+++|+ +..+..++.|+.|++++|.+++.++..+..+++|+.|++
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 444444444333 122344555555555555555555544444444444443
Q ss_pred ------------------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc------ccc
Q 046992 254 ------------------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL------CNL 309 (404)
Q Consensus 254 ------------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~------~~~ 309 (404)
.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. .+.
T Consensus 472 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 33445556677777888888777777777888888888888888888777652 237
Q ss_pred eecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCC
Q 046992 310 LNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 310 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 369 (404)
|++++|++++.+|..+.++++|+.+++++|++++.+|....+.++....+.|||.+|+..
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 889999999888998999999999999999999989988888888889999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-39 Score=342.06 Aligned_cols=363 Identities=32% Similarity=0.398 Sum_probs=278.1
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccc-cCCccccccccchhh---hhcCCCCCCcEEEcCCCCCCCcccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIG-LLTHLKVTCTTWLVY---FFIGQLKSLFELDLSLNQLSGSIFLSW 77 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~~~~---~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 77 (404)
++|.+|++|..+++|++|++++|++.+.+|..+. .+++|++|+++.+.. .....+++|++|++++|.+++..|..+
T Consensus 81 i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 81 ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH
Confidence 5788899999999999999999999888988765 899999999875421 123467889999999998888888888
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc------------CCCCcccccCCccccCCCCCCE
Q 046992 78 VTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN------------LRQNQFRGFLPSSIGNLTNLRK 145 (404)
Q Consensus 78 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------l~~n~~~~~~~~~~~~l~~L~~ 145 (404)
..+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|. +++|.+.+.+|..++.+++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 8899999999999888878888888888999999988888876663 6678888788888888888888
Q ss_pred EeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC---------
Q 046992 146 LFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT--------- 214 (404)
Q Consensus 146 L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~--------- 214 (404)
|++++|.+++..|..+.. ++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|..+.++++|+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 888888888778888777 888888888888876655 777788888888888888877887777666665
Q ss_pred ----ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-------ecCccccCCCCCCEEEcCCCcCCCCCchhc
Q 046992 215 ----TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGL 283 (404)
Q Consensus 215 ----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 283 (404)
+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++ .+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 233566777888888888887777877888888888777 456666666777777777777777777777
Q ss_pred cCCCCCCeEeCCCCccccccccc------ccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChh
Q 046992 284 NSLIQLEYLDLSANSFSQSIPEL------CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLA 357 (404)
Q Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~ 357 (404)
..+++|+.|++++|.+++.+|.. ...+++++|.+++.+|..+..+++|+.|++++|++.+.+|.....++++.+
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L 480 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL 480 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEE
Confidence 77777777777777777665541 226777777777766666666666666666666666665555444555555
Q ss_pred hhccCcC
Q 046992 358 ALQKNKR 364 (404)
Q Consensus 358 ~~~~n~~ 364 (404)
++.+|..
T Consensus 481 ~ls~n~l 487 (968)
T PLN00113 481 DLSRNQF 487 (968)
T ss_pred ECcCCcc
Confidence 5555543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=267.42 Aligned_cols=354 Identities=21% Similarity=0.223 Sum_probs=280.5
Q ss_pred cCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccC
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYD 90 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 90 (404)
.-+.|++++|++....+..|.++++|+.+++..+ +|....-..+++.|+|.+|.|+....+.+..++.|+.|+|+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4567888888888777777888888888888654 444444556788888888888877777788888888888888
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCCCC----Cc--------cCCCCcccccCCccccCCCCCCEEeCcccccccccC
Q 046992 91 NLLSGTISPFIGNLTSLVDLQLNSNQLIGH----IP--------NLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLP 158 (404)
Q Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~--------~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 158 (404)
|.++...-..|..-.++++|+|++|+|+.. +. .|++|+++..-+..|+.+++|+.|++..|+|...--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 888754445677767788888888887621 11 177778776666778889999999999999873324
Q ss_pred ccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCc
Q 046992 159 LSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYN 236 (404)
Q Consensus 159 ~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~ 236 (404)
..|.. ++|+.|.+..|.+..+.. .+..+.++++|++..|++.. +...++-+++.|+.|++++|.|..
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-----------vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-----------VNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-----------hhcccccccchhhhhccchhhhhe
Confidence 45555 889999999999998877 77889999999999998763 334456778899999999999999
Q ss_pred cCCccccccCCccEEEE------ecC-ccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc----
Q 046992 237 ELSSNWAKCAKLGSLNF------SIP-MELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE---- 305 (404)
Q Consensus 237 ~~~~~~~~l~~L~~L~l------~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---- 305 (404)
..+.+|.-+++|++|++ .++ ..+..+..|++|+|++|.+...-..+|..+.+|++|||+.|.++..+-+
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 99999999999999999 333 3567788999999999999876777889999999999999999876554
Q ss_pred -----cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCCCCCCCCCCCCCcc
Q 046992 306 -----LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCSNVKGLDLAKWFF 379 (404)
Q Consensus 306 -----~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~~~~~~~~~~ 379 (404)
....|.+.+|+|..+.-.+|.++.+|+.|||.+|.|...-|.. ..+ .+..+-+..-.++|+|... +.-.|.+
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~-Wl~qWl~ 465 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK-WLAQWLY 465 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH-HHHHHHH
Confidence 2238999999999988899999999999999999997665544 444 8888888888899999865 5555644
Q ss_pred cC
Q 046992 380 DF 381 (404)
Q Consensus 380 ~~ 381 (404)
+.
T Consensus 466 ~~ 467 (873)
T KOG4194|consen 466 RR 467 (873)
T ss_pred hc
Confidence 43
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3e-32 Score=241.78 Aligned_cols=349 Identities=29% Similarity=0.357 Sum_probs=214.2
Q ss_pred hhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046992 8 PQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNF 83 (404)
Q Consensus 8 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (404)
+.+.++..+.+|++..|++. ..|.+++.+..+..++.+.. .|+.+..+..++.++.++|.+. .++..++.+-.|
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 33444444555555555544 44444454444444444331 3444444444444444444443 334444444444
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc----------------------------------CCCCcc
Q 046992 84 SRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN----------------------------------LRQNQF 129 (404)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------------l~~n~~ 129 (404)
..++..+|+++ ..|.++.++.+|..+++.+|.+....|+ +++|.+
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 44444444443 3344444444444444444443322221 223333
Q ss_pred cccCCccccCCCCCCEEeCcccccccccCccccC--CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhh
Q 046992 130 RGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN--LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSL 207 (404)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 207 (404)
. .+| .|.++..|.+++++.|.|. .+|.+... .++..||++.|++.+++..++.+.+|..|++++|.++ .+|.++
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 3 455 5666666777777777766 66666654 7788888888888887777788888888888888876 566667
Q ss_pred hcCCCCC------------------------------------------------------ccccccCCCccEEeCCCcc
Q 046992 208 RNCISLT------------------------------------------------------TAYFAFYATLTFLDLSHNN 233 (404)
Q Consensus 208 ~~l~~L~------------------------------------------------------~~~~~~~~~L~~L~l~~n~ 233 (404)
+++ .|. ........+.+.|++++-.
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 666 443 0001112223333333333
Q ss_pred cCccCCccccccC--CccEEEE------------------------------ecCccccCCCCCCEEEcCCCcCCCCCch
Q 046992 234 FYNELSSNWAKCA--KLGSLNF------------------------------SIPMELGKLNSPTKLTLRENQLSGHLPR 281 (404)
Q Consensus 234 l~~~~~~~~~~l~--~L~~L~l------------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 281 (404)
++..+.+.|..-. -....++ .+|..+..+++|..|++++|.+. .+|.
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 3222221111110 0111111 34455677899999999999998 8999
Q ss_pred hccCCCCCCeEeCCCCccccccccccc------ceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCC
Q 046992 282 GLNSLIQLEYLDLSANSFSQSIPELCN------LLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAP 355 (404)
Q Consensus 282 ~l~~l~~L~~L~L~~n~l~~~~~~~~~------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~ 355 (404)
.++.+..|+.|+++.|+|. .+|.+.. .+-.++|++..+.++.+.++.+|..||+.+|.+...+|..+.+.+++
T Consensus 453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccccee
Confidence 9999999999999999997 5666333 55667799999888889999999999999999998888889999999
Q ss_pred hhhhccCcCCC
Q 046992 356 LAALQKNKRLC 366 (404)
Q Consensus 356 ~~~~~~n~~~c 366 (404)
.+.+.|||+.-
T Consensus 532 hLeL~gNpfr~ 542 (565)
T KOG0472|consen 532 HLELDGNPFRQ 542 (565)
T ss_pred EEEecCCccCC
Confidence 99999999883
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-31 Score=248.07 Aligned_cols=341 Identities=25% Similarity=0.272 Sum_probs=228.9
Q ss_pred CCCcCcEeeCCCCcCC-CCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEE
Q 046992 12 NLSKLEYLYLPFNQLF-GKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRV 86 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (404)
.++-++-.|+++|.++ +.+|.....+..++.|.+... +|+.++.+.+|++|.+++|++. .+-..+..++.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 3445566666666665 446666666666666555432 5556666666777777776665 344456666667777
Q ss_pred EccCCccc-ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC--
Q 046992 87 YIYDNLLS-GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-- 163 (404)
Q Consensus 87 ~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-- 163 (404)
.+..|+++ .-+|..+.++..|.+|||++|+++ ..|..+..-+++-.|++++|+|. .+|..+..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-------------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 77666664 234555566666777777777666 55666655566666666666665 45544333
Q ss_pred CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCC--------------ccccccCCCccEEeC
Q 046992 164 LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT--------------TAYFAFYATLTFLDL 229 (404)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~--------------~~~~~~~~~L~~L~l 229 (404)
+-|-.|+|++|++..++|.+.++..|++|.+++|.+.-..-..+..+++|+ +..+..+.+|..+|+
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 555566666666666655556666666666666654322112222222222 334566678888888
Q ss_pred CCcccCccCCccccccCCccEEEE------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccc-cc
Q 046992 230 SHNNFYNELSSNWAKCAKLGSLNF------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFS-QS 302 (404)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~l------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~ 302 (404)
+.|.+. ..|+.+..+.+|+.|++ .+....+...+|++|++++|+++ .+|.++..++.|+.|.+.+|.++ ..
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 888884 67777888888888877 33334455678888999999988 88888889999999999888875 23
Q ss_pred ccc-ccc-----ceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCC
Q 046992 303 IPE-LCN-----LLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 303 ~~~-~~~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+|+ +.+ .+..++|.+.. .|++++.|..|+.|.|++|++.+.+..+..++.++.+++..||.+.-.|.
T Consensus 308 iPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 443 443 67778887766 89999999999999999999986666777899999999999998875543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3.7e-30 Score=238.19 Aligned_cols=310 Identities=22% Similarity=0.181 Sum_probs=218.5
Q ss_pred hhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccc------------------------h-----hhhhcCCCCC
Q 046992 8 PQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTW------------------------L-----VYFFIGQLKS 58 (404)
Q Consensus 8 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~------------------------~-----~~~~l~~l~~ 58 (404)
+.|.++++|+.+++.+|.++ .+|...+...+++.|.+.. + ...+|..-.+
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 34556666666666666665 5555544444555555432 2 1223334445
Q ss_pred CcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcccc
Q 046992 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIG 138 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~ 138 (404)
+++|+|++|.|+......|..+.+|.+|.|+.|+++...+.+|.++++|+.|+|..|++. -.-.-.|.
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir------------ive~ltFq 242 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR------------IVEGLTFQ 242 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee------------eehhhhhc
Confidence 666666666665555555666666666666666665444455566666666666666655 22245678
Q ss_pred CCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
++++|+.|.+..|.+...-...|.. .++++|+|..|+++.+.. ++..++.|+.|++++|.+...-++.+
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--------- 313 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--------- 313 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh---------
Confidence 8999999999999988555566666 889999999999988777 88889999999999998875555555
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEE------ec-CccccCCCCCCEEEcCCCcCCCC---CchhccCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SI-PMELGKLNSPTKLTLRENQLSGH---LPRGLNSL 286 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~-p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l 286 (404)
+.+++|++|+|++|+++...+.+|..+..|+.|.+ .+ ...+..+++|++|+|++|.+... -...|.++
T Consensus 314 --sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 314 --SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred --hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 56678889999999998888888888888888888 11 22466788999999999987633 34567789
Q ss_pred CCCCeEeCCCCcccccccc------cccceecCCCcCcccCchhhccCCCCCEEECCCCcCc
Q 046992 287 IQLEYLDLSANSFSQSIPE------LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE 342 (404)
Q Consensus 287 ~~L~~L~L~~n~l~~~~~~------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 342 (404)
++|+.|++.+|++..+.-. -.+.|||.+|.|.++.|.+|..+ .|++|-+..-.|-
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 9999999999998743322 23389999999999999999998 8888887665543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1e-30 Score=232.11 Aligned_cols=349 Identities=26% Similarity=0.287 Sum_probs=241.7
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccc----hhhhhcCCCCCCcEEEcCCCCCCCcccccccCC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTW----LVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 80 (404)
++|+++..+.+++.|++++|.+. .+|++++.+-.|..+.... ..|..+.++.++..+++.+|+++...|..+ .+
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m 182 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AM 182 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HH
Confidence 45666666666666666666665 5555666665555555432 255666666667777777777663333333 36
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc-----------CCCCcccccCCcccc-CCCCCCEEeC
Q 046992 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN-----------LRQNQFRGFLPSSIG-NLTNLRKLFL 148 (404)
Q Consensus 81 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------l~~n~~~~~~~~~~~-~l~~L~~L~l 148 (404)
+.|++|+...|.+. .+|..++.+.+|+.|++..|.+. .+|. +..|.+. .+|.... .++++..||+
T Consensus 183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 77777777777665 66777777777777777777765 3333 3334444 4566654 8999999999
Q ss_pred cccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCC------------------------
Q 046992 149 RHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPI------------------------ 203 (404)
Q Consensus 149 ~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~------------------------ 203 (404)
.+|+++ ..|..+.. .+|.+||+++|.+++.+..++++ .|+.|.+.+|.+...-
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence 999999 88999888 88999999999999988899999 8999999888663210
Q ss_pred -------------c-hhhhcC------CCCC----------ccccccC--CCccEEeCCCccc-----------------
Q 046992 204 -------------P-KSLRNC------ISLT----------TAYFAFY--ATLTFLDLSHNNF----------------- 234 (404)
Q Consensus 204 -------------~-~~~~~l------~~L~----------~~~~~~~--~~L~~L~l~~n~l----------------- 234 (404)
+ ..+.+. +.|. ...|... .-.+..+++.|++
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 0 001110 0111 0011111 1133444444432
Q ss_pred ------CccCCccccccCCccEEEE------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccc
Q 046992 235 ------YNELSSNWAKCAKLGSLNF------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQS 302 (404)
Q Consensus 235 ------~~~~~~~~~~l~~L~~L~l------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 302 (404)
-+.+|..++.+++|..|++ .+|..++.+..|+.|++++|++. ..|.++-.+..++.+-.++|++..+
T Consensus 418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred HhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 2456667777888888888 88999999999999999999998 8999888888888888888999876
Q ss_pred ccc-cc-----cceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC-CcccCCCChhhhccCc
Q 046992 303 IPE-LC-----NLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN-SAVFRDAPLAALQKNK 363 (404)
Q Consensus 303 ~~~-~~-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 363 (404)
.|+ +. ..||+.+|.+.. +|..+++|++|++|++.||+|. .++. .-..++...+++.+++
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred ChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 665 22 289999999988 7888999999999999999998 3332 2344555666665554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=7.6e-29 Score=231.35 Aligned_cols=294 Identities=27% Similarity=0.293 Sum_probs=191.4
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccc------hhhhhcCCCCCCcEEEcCCCCCCCccccccc
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTW------LVYFFIGQLKSLFELDLSLNQLSGSIFLSWV 78 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (404)
++|+.++.+.+|++|.++.|++. .+...++.|+.||.+.+.. .+|.-+..+..|.+||||+|+++ ..|..+.
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE 123 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE 123 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh
Confidence 45555555555555555555554 4444455555555544422 24555556666666666666665 5565666
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccc----
Q 046992 79 TLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLS---- 154 (404)
Q Consensus 79 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~---- 154 (404)
...++-+|++++|+|..+.-..|-+++.|-.|||++|++. .+|..+..+.+|++|.+++|.+.
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-------------MLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-------------hcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 6666666666666665333334455666666666666665 34445555555555555555442
Q ss_pred ---------------------cccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCC
Q 046992 155 ---------------------GSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCIS 212 (404)
Q Consensus 155 ---------------------~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 212 (404)
..+|..+.. .+|+.++++.|.+..++..+..+++|+.|++++|.++.. ...
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-~~~------ 263 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-NMT------ 263 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-ecc------
Confidence 235555555 667777777777776666777777788888888777622 111
Q ss_pred CCccccccCCCccEEeCCCcccCccCCccccccCCccEEEE--------ecCccccCCCCCCEEEcCCCcCCCCCchhcc
Q 046992 213 LTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF--------SIPMELGKLNSPTKLTLRENQLSGHLPRGLN 284 (404)
Q Consensus 213 L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 284 (404)
.....+|+.|+++.|+++ ..|..++++++|+.|+. .+|+.++.+..|+.+..++|.+. .+|+.+.
T Consensus 264 -----~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc 336 (1255)
T KOG0444|consen 264 -----EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC 336 (1255)
T ss_pred -----HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh
Confidence 133456778888888875 56777777777777666 67888888888888888888886 7888888
Q ss_pred CCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCC
Q 046992 285 SLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTP 346 (404)
Q Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 346 (404)
.|+.|+.|.|+.|++.. .|+++.-++.|+.||+..|+=-..+|
T Consensus 337 RC~kL~kL~L~~NrLiT-------------------LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLIT-------------------LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhcccccceee-------------------chhhhhhcCCcceeeccCCcCccCCC
Confidence 88888888888888765 88999999999999999997543444
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=5.3e-26 Score=220.99 Aligned_cols=362 Identities=27% Similarity=0.288 Sum_probs=222.1
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEE
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVY 87 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (404)
+.-+|+.|++++|.+. .+|..+..+.+|+.++++.+ .|.+..++.+|+++.|..|.+. ..|..+..+.+|+.|+
T Consensus 43 ~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD 120 (1081)
T ss_pred heeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence 4445888888888886 88888888888888888653 5677778888888888888876 6787888888888888
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCCcCCCCCc-------cCCCCcccccCCccccCC--------------------
Q 046992 88 IYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIP-------NLRQNQFRGFLPSSIGNL-------------------- 140 (404)
Q Consensus 88 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~l~~n~~~~~~~~~~~~l-------------------- 140 (404)
++.|.+. ..|..+..++.++.+..++|.....++ .+..|.+.+.++..+..+
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence 8888876 566666666666666666551110110 122222222222222222
Q ss_pred -------------------CCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccC
Q 046992 141 -------------------TNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLG 201 (404)
Q Consensus 141 -------------------~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 201 (404)
++|+.|+.++|.++ ..-..+...+|+++++++|+++.++.++..+.+|+.+...+|.+.
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~- 277 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV- 277 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcce-eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-
Confidence 23333333444433 222222224566666666666665556666666666666666663
Q ss_pred CCchhhhcCCCCC------------ccccccCCCccEEeCCCcccCccCCccccccCC-ccEEEE---------------
Q 046992 202 PIPKSLRNCISLT------------TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAK-LGSLNF--------------- 253 (404)
Q Consensus 202 ~~~~~~~~l~~L~------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l--------------- 253 (404)
.+|..+...++|. +.....++.|+.|++..|.+....+..+.-... +..+..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 5555444444433 334455777888888888775433322211111 111111
Q ss_pred ----------------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----ccceec
Q 046992 254 ----------------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLNT 312 (404)
Q Consensus 254 ----------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~l 312 (404)
..-+.+.++.+|+.|+|++|++.......+.+++.|++|+|+||.++.....+ ..+|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 11223345667777777777776455556667777777777777776433222 226777
Q ss_pred CCCcCcccCchhhccCCCCCEEECCCCcCccc-CCCCcccCCCChhhhccCcCCCCCCCCCCCCCCccc
Q 046992 313 AYNNLSSLIPKCFEKMHGLSGIDMSYNELEGS-TPNSAVFRDAPLAALQKNKRLCSNVKGLDLAKWFFD 380 (404)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~~~l~~~~~~~n~~~c~~~~~~~~~~~~~~ 380 (404)
.+|++.. .| .+..++.|+.+|++.|+++.. +|.....++++.+++.||++.--....++.|+.+..
T Consensus 438 hsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 438 HSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred cCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhh
Confidence 7777766 55 678899999999999999864 444444499999999999986655555566666433
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2e-22 Score=214.92 Aligned_cols=327 Identities=20% Similarity=0.196 Sum_probs=217.6
Q ss_pred ChhhcCCCcCcEeeCCCCc------CCCCCCcccccCC-ccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccc
Q 046992 7 SPQISNLSKLEYLYLPFNQ------LFGKIPPEIGLLT-HLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFL 75 (404)
Q Consensus 7 p~~~~~l~~L~~L~l~~n~------l~~~~p~~l~~l~-~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 75 (404)
+.+|.+|++|+.|.+..+. +...+|+.+..++ +|+.|..... .|..+ ...+|++|++.+|.+. .++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccc
Confidence 3468889999999886653 2335667666664 5777777543 34444 4678888888888876 5677
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccccccc
Q 046992 76 SWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSG 155 (404)
Q Consensus 76 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 155 (404)
.+..+++|+.|+++++.....+|. +..+++|++|++++|... ..+|..+..+++|+.|++++|....
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L------------~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL------------VELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc------------cccchhhhccCCCCEEeCCCCCCcC
Confidence 777888888888887754435553 677888888888887543 2567788888888888888876544
Q ss_pred ccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCccc-
Q 046992 156 SLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNF- 234 (404)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l- 234 (404)
.+|..+..++|+.|++++|......+.. ..+|+.|++++|.+. .+|..+ .+++|+.|.+.++..
T Consensus 696 ~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~------------~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 696 ILPTGINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL------------RLENLDELILCEMKSE 760 (1153)
T ss_pred ccCCcCCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc------------cccccccccccccchh
Confidence 6776653478888888887654433322 457888888888765 455432 123333333332211
Q ss_pred ------CccCCccccccCCccEEEE-------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 235 ------YNELSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 235 ------~~~~~~~~~~l~~L~~L~l-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
....+.....+++|+.|++ .+|..++++++|+.|++++|...+.+|... .+++|+.|++++|....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 0011111112233444443 357777788888888888875444666655 68888999998887666
Q ss_pred ccccc---ccceecCCCcCcccCchhhccCCCCCEEECCCC-cCcccCCCCcccCCCChhhhccCcCC
Q 046992 302 SIPEL---CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYN-ELEGSTPNSAVFRDAPLAALQKNKRL 365 (404)
Q Consensus 302 ~~~~~---~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~~~l~~~~~~~n~~~ 365 (404)
.+|.. .+.|++++|.++. +|.++..+++|+.|++++| ++....+....+++++.+++.+++.+
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cccccccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 55553 3488888888886 7888889999999999885 46655455566777777777765433
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=6.8e-25 Score=213.35 Aligned_cols=331 Identities=27% Similarity=0.296 Sum_probs=240.8
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccc----hhhhhcCCCCCCcEEEcCCCCCCCcccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTW----LVYFFIGQLKSLFELDLSLNQLSGSIFLSW 77 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 77 (404)
..+.+|..+..+.+|+.|.++.|.+. ..|.+..++.+|+++++.. ..|.++..+++|++|++++|.+. .+|..+
T Consensus 56 ~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 56 QISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred ccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhH
Confidence 35788999999999999999999997 8888899999999999865 47888889999999999999986 566555
Q ss_pred cCCCCCCEEEccCC-------------------cccccCCccccCCCCCCEEECcCCcCCC-CC---c------------
Q 046992 78 VTLSNFSRVYIYDN-------------------LLSGTISPFIGNLTSLVDLQLNSNQLIG-HI---P------------ 122 (404)
Q Consensus 78 ~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~---~------------ 122 (404)
..+..+..+..++| .+.+.++..+..++. .|+|.+|.+.- .. +
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhccc
Confidence 55544444444444 333333333333333 35555555440 00 0
Q ss_pred -----------------------------------cCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-Ccc
Q 046992 123 -----------------------------------NLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTL 166 (404)
Q Consensus 123 -----------------------------------~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L 166 (404)
++++|++. .+|+++..+.+|+.+...+|.++ .+|..+.. .+|
T Consensus 212 s~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 212 SELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSL 289 (1081)
T ss_pred ceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhH
Confidence 05566666 35677788888888888888886 66666666 778
Q ss_pred cEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCC---------------CCccccccCCCccEEeCCC
Q 046992 167 SFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCIS---------------LTTAYFAFYATLTFLDLSH 231 (404)
Q Consensus 167 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~---------------L~~~~~~~~~~L~~L~l~~ 231 (404)
+.|.+..|.+..+++.......|++|++..|.+. .+|+.+-.... +....=..++.|+.|.+.+
T Consensus 290 ~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 290 VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 8888888888877777788899999999999886 44443211111 1111112345677888888
Q ss_pred cccCccCCccccccCCccEEEE------ecCc-cccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccc
Q 046992 232 NNFYNELSSNWAKCAKLGSLNF------SIPM-ELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP 304 (404)
Q Consensus 232 n~l~~~~~~~~~~l~~L~~L~l------~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 304 (404)
|.+++..-..+.+..+|+.|.+ .+|+ .+.++..|++|+|++|+++ .+|.++..++.|++|..-+|++. ..|
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP 446 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP 446 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech
Confidence 8888877777788888888888 4665 4678889999999999998 88999999999999999999997 456
Q ss_pred cccc-----ceecCCCcCcccCchhhccCCCCCEEECCCCcC
Q 046992 305 ELCN-----LLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNEL 341 (404)
Q Consensus 305 ~~~~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 341 (404)
++.+ .+|++.|+++...-..-...++|++||++||.-
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 6444 899999999986443333338999999999984
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=6.4e-21 Score=190.45 Aligned_cols=259 Identities=23% Similarity=0.245 Sum_probs=152.6
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcC-CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCc
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIG-QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNL 92 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 92 (404)
..-..|+++++.++ .+|..+. ++|+.|.+..+....+. .+++|++|++++|.++ .+|.. .++|++|++.+|.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 34567888888887 6777643 23444433322111111 1345555555555555 23321 2455555555555
Q ss_pred ccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccCCcccEEEcc
Q 046992 93 LSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLD 172 (404)
Q Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~ 172 (404)
++ .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|.++ .+|... ..|+.|+++
T Consensus 274 L~-~Lp~l---p~~L~~L~Ls~N~Lt-------------~LP~---~p~~L~~LdLS~N~L~-~Lp~lp--~~L~~L~Ls 330 (788)
T PRK15387 274 LT-HLPAL---PSGLCKLWIFGNQLT-------------SLPV---LPPGLQELSVSDNQLA-SLPALP--SELCKLWAY 330 (788)
T ss_pred hh-hhhhc---hhhcCEEECcCCccc-------------cccc---cccccceeECCCCccc-cCCCCc--ccccccccc
Confidence 54 33322 134555555555555 3333 1345666666666665 333211 345556666
Q ss_pred cCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEE
Q 046992 173 TNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLN 252 (404)
Q Consensus 173 ~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 252 (404)
+|.+..++. + ..+|+.|++++|++. .+|.. .++|+.|++++|.+.
T Consensus 331 ~N~L~~LP~-l--p~~Lq~LdLS~N~Ls-~LP~l--------------p~~L~~L~Ls~N~L~----------------- 375 (788)
T PRK15387 331 NNQLTSLPT-L--PSGLQELSVSDNQLA-SLPTL--------------PSELYKLWAYNNRLT----------------- 375 (788)
T ss_pred cCccccccc-c--ccccceEecCCCccC-CCCCC--------------Ccccceehhhccccc-----------------
Confidence 666654332 1 135666666666655 23321 124555566666554
Q ss_pred EecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc---ccceecCCCcCcccCchhhccCC
Q 046992 253 FSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL---CNLLNTAYNNLSSLIPKCFEKMH 329 (404)
Q Consensus 253 l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~L~l~~n~l~~~~~~~~~~l~ 329 (404)
.+|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|.+++ +|.. ...|++++|+|+. +|..+.+++
T Consensus 376 -~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~-LP~sl~~L~ 445 (788)
T PRK15387 376 -SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTR-LPESLIHLS 445 (788)
T ss_pred -cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccc-cChHHhhcc
Confidence 23332 357899999999998 45543 3689999999999986 4543 3389999999986 788999999
Q ss_pred CCCEEECCCCcCcccCCC
Q 046992 330 GLSGIDMSYNELEGSTPN 347 (404)
Q Consensus 330 ~L~~L~l~~N~l~~~~p~ 347 (404)
+|+.++|++|++++..+.
T Consensus 446 ~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCeEECCCCCCCchHHH
Confidence 999999999999976554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.2e-19 Score=193.91 Aligned_cols=310 Identities=21% Similarity=0.171 Sum_probs=225.4
Q ss_pred ccCCChhhcCCC-cCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccccc
Q 046992 3 FGIISPQISNLS-KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFLSW 77 (404)
Q Consensus 3 ~g~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 77 (404)
...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|+.|.+... .+..+..+++|++|+++++.....+| .+
T Consensus 577 ~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 577 RWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred eeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 346788888775 6999999999986 888776 5788999888754 45567789999999999886544666 47
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccccccccc
Q 046992 78 VTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSL 157 (404)
Q Consensus 78 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 157 (404)
..+++|++|++.+|.....+|..+..+++|+.|++++|.... .+|..+ .+++|+.|++++|.....+
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------------~Lp~~i-~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------------ILPTGI-NLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------------ccCCcC-CCCCCCEEeCCCCCCcccc
Confidence 889999999999987666889999999999999999875432 456554 6889999999998765455
Q ss_pred CccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc
Q 046992 158 PLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE 237 (404)
Q Consensus 158 ~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~ 237 (404)
|.. ..+|+.|++++|.+..++..+ .+++|+.|.+.++... .+...+ ..+.+..+...++|+.|++++|.....
T Consensus 721 p~~--~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~---~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 721 PDI--STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE-KLWERV---QPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred ccc--cCCcCeeecCCCccccccccc-cccccccccccccchh-hccccc---cccchhhhhccccchheeCCCCCCccc
Confidence 532 167889999999887655433 5677888887765432 111111 112222234457788888888877777
Q ss_pred CCccccccCCccEEEE-------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc----
Q 046992 238 LSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL---- 306 (404)
Q Consensus 238 ~~~~~~~l~~L~~L~l-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---- 306 (404)
+|..+..+++|+.|++ .+|... .+++|++|++++|.....+|.. .++|++|+|++|.++..+..+
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCC
Confidence 8888888888888887 345444 5788899999888554455542 367888999998887533222
Q ss_pred -ccceecCCC-cCcccCchhhccCCCCCEEECCCCc
Q 046992 307 -CNLLNTAYN-NLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 307 -~~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
...|++++| ++.. +|..+..+++|+.+++++|.
T Consensus 870 ~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 870 NLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 237888875 5554 66778888999999999886
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-23 Score=184.17 Aligned_cols=265 Identities=21% Similarity=0.222 Sum_probs=144.8
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYD-NLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
|+.+++||+||||+|.|+.+.|.+|.+++.|..|.+.+ |+|+......|+.+..|+.|.+.-|++..
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C------------ 154 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC------------ 154 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc------------
Confidence 66666666666666666656666666666666555555 56654444456666666666666665551
Q ss_pred cCCccccCCCCCCEEeCcccccccccCc-cccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhc
Q 046992 132 FLPSSIGNLTNLRKLFLRHNNLSGSLPL-SIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRN 209 (404)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 209 (404)
...+.|..++++..|.+.+|.+. .++. .+.. ..++.+.+..|.... ..+++.+.... .. .|
T Consensus 155 ir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~-a~------~~----- 217 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDL-AM------NP----- 217 (498)
T ss_pred hhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc----ccccchhhhHH-hh------ch-----
Confidence 22345556666666666666665 3333 4444 555555555554221 11111111000 00 00
Q ss_pred CCCCCccccccCCCccEEeCCCcccCccCCcccccc-CCc----cE---EEEecC-ccccCCCCCCEEEcCCCcCCCCCc
Q 046992 210 CISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKC-AKL----GS---LNFSIP-MELGKLNSPTKLTLRENQLSGHLP 280 (404)
Q Consensus 210 l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L----~~---L~l~~p-~~~~~l~~L~~L~L~~n~l~~~~~ 280 (404)
..++......-..+.+.++..+.+..|... ..+ .. .+...| ..|..+++|++|++++|+++++-+
T Consensus 218 ------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 218 ------IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred ------hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 001111111111122222211111111100 000 00 000111 146678888888888888887777
Q ss_pred hhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhh
Q 046992 281 RGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAAL 359 (404)
Q Consensus 281 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~ 359 (404)
.+|.....+++|.|..|++.. +....|.++..|+.|+|.+|+|+...|-. ....++..+.+
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~------------------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEF------------------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred hhhcchhhhhhhhcCcchHHH------------------HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 888888888888888887764 24456888888888888888888765544 55677888888
Q ss_pred ccCcCCCCCCC
Q 046992 360 QKNKRLCSNVK 370 (404)
Q Consensus 360 ~~n~~~c~~~~ 370 (404)
.+|||.|+|..
T Consensus 354 ~~Np~~CnC~l 364 (498)
T KOG4237|consen 354 LSNPFNCNCRL 364 (498)
T ss_pred ccCcccCccch
Confidence 88888888754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=7.3e-20 Score=182.96 Aligned_cols=235 Identities=24% Similarity=0.240 Sum_probs=153.9
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccc
Q 046992 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSI 137 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~ 137 (404)
+|+.|++++|.++ .+|. ..++|++|++++|.++ .+|.. .++|+.|++++|.++ .+|..
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-------------~Lp~l- 280 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-------------HLPAL- 280 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-------------hhhhc-
Confidence 5666666666665 3443 1456666666666665 33432 245666666666655 33332
Q ss_pred cCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccc
Q 046992 138 GNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAY 217 (404)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~ 217 (404)
..+|+.|++++|+++ .+|... ++|+.|++++|.+..++.. ...|+.|++++|.+. .+|.
T Consensus 281 --p~~L~~L~Ls~N~Lt-~LP~~p--~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~-~LP~------------ 339 (788)
T PRK15387 281 --PSGLCKLWIFGNQLT-SLPVLP--PGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLPT------------ 339 (788)
T ss_pred --hhhcCEEECcCCccc-cccccc--cccceeECCCCccccCCCC---cccccccccccCccc-cccc------------
Confidence 245666777777776 444321 5677777777777664331 234666677776665 2332
Q ss_pred cccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCC
Q 046992 218 FAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSAN 297 (404)
Q Consensus 218 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 297 (404)
...+|+.|++++|++++ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|
T Consensus 340 --lp~~Lq~LdLS~N~Ls~------------------LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 340 --LPSGLQELSVSDNQLAS------------------LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGN 392 (788)
T ss_pred --cccccceEecCCCccCC------------------CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCC
Confidence 11367888888888863 3332 346888999999998 56653 357999999999
Q ss_pred ccccccc--ccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCC
Q 046992 298 SFSQSIP--ELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 298 ~l~~~~~--~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 366 (404)
.+++.++ .-...|++++|.+++ +|.. ..+|+.|++++|+++..+.....++.++.+++.+|++..
T Consensus 393 ~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 393 RLTSLPVLPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cccCCCCcccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 9986332 234489999999998 5654 346888999999999544445678999999999999654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.2e-19 Score=182.35 Aligned_cols=244 Identities=23% Similarity=0.329 Sum_probs=181.9
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcc
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLL 93 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 93 (404)
.+...|+++++.++ .+|.. + .++++.|++++|.++ .+|..+. .+|++|++++|.+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~-------------------I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~L 232 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPAC-------------------I--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQL 232 (754)
T ss_pred cCceEEEeCCCCcC-cCCcc-------------------c--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcc
Confidence 45678889888887 67765 2 247889999999988 5665553 5899999999998
Q ss_pred cccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccCCcccEEEccc
Q 046992 94 SGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDT 173 (404)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~ 173 (404)
+ .+|..+. ..|+.|++++|++. .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++
T Consensus 233 t-sLP~~l~--~~L~~L~Ls~N~L~-------------~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~ 292 (754)
T PRK15370 233 T-SIPATLP--DTIQEMELSINRIT-------------ELPERLP--SALQSLDLFHNKIS-CLPENLP-EELRYLSVYD 292 (754)
T ss_pred c-cCChhhh--ccccEEECcCCccC-------------cCChhHh--CCCCEEECcCCccC-ccccccC-CCCcEEECCC
Confidence 7 5666554 47899999999887 5565553 47899999999988 5676543 5789999999
Q ss_pred CcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEE
Q 046992 174 NQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF 253 (404)
Q Consensus 174 n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 253 (404)
|.++.++..+. +.|+.|++++|.+. .+|..+ .++|+.|++++|.+++
T Consensus 293 N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l-------------~~sL~~L~Ls~N~Lt~----------------- 339 (754)
T PRK15370 293 NSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL-------------PPGLKTLEAGENALTS----------------- 339 (754)
T ss_pred CccccCcccch--hhHHHHHhcCCccc-cCCccc-------------cccceeccccCCcccc-----------------
Confidence 98887654432 46888899998876 344322 2578889999998873
Q ss_pred ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc---ccceecCCCcCcccCchh----hc
Q 046992 254 SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL---CNLLNTAYNNLSSLIPKC----FE 326 (404)
Q Consensus 254 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~L~l~~n~l~~~~~~~----~~ 326 (404)
+|..+ .++|+.|++++|+++ .+|..+ .+.|+.|++++|.++..++.+ .+.|++++|+++. +|.. +.
T Consensus 340 -LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~-LP~sl~~~~~ 412 (754)
T PRK15370 340 -LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVR-LPESLPHFRG 412 (754)
T ss_pred -CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCccc-CchhHHHHhh
Confidence 33333 268999999999998 567655 368999999999998654443 3378999999986 4544 34
Q ss_pred cCCCCCEEECCCCcCc
Q 046992 327 KMHGLSGIDMSYNELE 342 (404)
Q Consensus 327 ~l~~L~~L~l~~N~l~ 342 (404)
.++.+..+++.+|+++
T Consensus 413 ~~~~l~~L~L~~Npls 428 (754)
T PRK15370 413 EGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCCccEEEeeCCCcc
Confidence 4578899999999986
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=1.2e-21 Score=174.34 Aligned_cols=273 Identities=19% Similarity=0.162 Sum_probs=189.6
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccc-----hhhhhcCCCCCCcEEEcCC-CCCCCcccccccCCCCCCEEE
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTW-----LVYFFIGQLKSLFELDLSL-NQLSGSIFLSWVTLSNFSRVY 87 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~-----~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ 87 (404)
+.-..++|..|.|+...|.+|+.+++||.++++. ..|.+|.+++++..|-+.+ |+|+......|.++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456677777777755556677777777777754 3566788898888776666 889865567899999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc-cccCCCCCCEEeCcccccc------------
Q 046992 88 IYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS-SIGNLTNLRKLFLRHNNLS------------ 154 (404)
Q Consensus 88 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~------------ 154 (404)
+.-|++.....++|..+++|..|.+.+|.+. .++. .|..+..++.+.+..|.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-------------~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-------------SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-------------hhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 9999998778888999999999999999887 4444 7788888888888887732
Q ss_pred cccCccccC-CcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCC
Q 046992 155 GSLPLSIGN-LTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSH 231 (404)
Q Consensus 155 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~ 231 (404)
...|.+++. ....-..+.+.++..+.+ .......+..-..+.+...+..|. ..|..+++|+.|++++
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~----------~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA----------KCFKKLPNLRKLNLSN 283 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH----------HHHhhcccceEeccCC
Confidence 122222332 223333344444443333 111111111111222223333332 2378899999999999
Q ss_pred cccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccccccee
Q 046992 232 NNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLN 311 (404)
Q Consensus 232 n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~ 311 (404)
|++++.- +.+|.....+++|.|..|++...-...|.++..|+.|+|.+|+|+..
T Consensus 284 N~i~~i~-----------------~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~--------- 337 (498)
T KOG4237|consen 284 NKITRIE-----------------DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV--------- 337 (498)
T ss_pred Cccchhh-----------------hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE---------
Confidence 9998654 34556677888888999988866677788899999999988888764
Q ss_pred cCCCcCcccCchhhccCCCCCEEECCCCcCccc
Q 046992 312 TAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 312 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
.|.+|..+.+|..|++-.|++...
T Consensus 338 ---------~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 338 ---------APGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ---------ecccccccceeeeeehccCcccCc
Confidence 667788888888888888887543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.2e-18 Score=175.19 Aligned_cols=245 Identities=22% Similarity=0.259 Sum_probs=186.4
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS 136 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~ 136 (404)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-------------sLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-------------SIPAT 238 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-------------cCChh
Confidence 46789999999988 5676553 58999999999998 6676554 58999999999988 56654
Q ss_pred ccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 137 IGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+..++..+. .+|+.|++++|.+. .+|..+
T Consensus 239 l~--~~L~~L~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l--------- 302 (754)
T PRK15370 239 LP--DTIQEMELSINRIT-ELPERLP-SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHL--------- 302 (754)
T ss_pred hh--ccccEEECcCCccC-cCChhHh-CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccc---------
Confidence 43 47999999999998 6776543 579999999999987655443 58999999999887 344322
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
.++|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++
T Consensus 303 ----p~sL~~L~Ls~N~Lt~------------------LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~ 355 (754)
T PRK15370 303 ----PSGITHLNVQSNSLTA------------------LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSK 355 (754)
T ss_pred ----hhhHHHHHhcCCcccc------------------CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCC
Confidence 2468889999998873 23322 258999999999998 5666553 7999999999
Q ss_pred Ccccccc---cccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC----cccCCCChhhhccCcCCC
Q 046992 297 NSFSQSI---PELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS----AVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 297 n~l~~~~---~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~----~~~~~l~~~~~~~n~~~c 366 (404)
|.++..+ |.-.+.|++++|+++. +|..+. ..|+.|++++|+++..+... ...+.+..+.+.+||+..
T Consensus 356 N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 356 NQITVLPETLPPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCCcCChhhcCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 9998432 2344589999999997 555554 36999999999998433222 234777889999999754
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=6e-19 Score=163.94 Aligned_cols=266 Identities=20% Similarity=0.164 Sum_probs=129.7
Q ss_pred cCCCCCCcEEEcCCCCCCCc----ccccccCCCCCCEEEccCCcccc------cCCccccCCCCCCEEECcCCcCCCCCc
Q 046992 53 IGQLKSLFELDLSLNQLSGS----IFLSWVTLSNFSRVYIYDNLLSG------TISPFIGNLTSLVDLQLNSNQLIGHIP 122 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 122 (404)
+..+.+|++|+++++.++.. ++..+...+.+++++++++.+.. .++..+..+++|+.|++++|.+..
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--- 95 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP--- 95 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh---
Confidence 44555566666666666422 33344455566666666665541 122344556666666666666542
Q ss_pred cCCCCcccccCCccccCC---CCCCEEeCcccccccccC----ccccC--CcccEEEcccCcCccCC-----CccCCCCC
Q 046992 123 NLRQNQFRGFLPSSIGNL---TNLRKLFLRHNNLSGSLP----LSIGN--LTLSFLVLDTNQFTSYV-----PNICHSGL 188 (404)
Q Consensus 123 ~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~----~~~~~--~~L~~L~l~~n~l~~~~-----~~l~~~~~ 188 (404)
..+..+..+ ++|++|++++|++.+... ..+.. ++|+.|++++|.++... ..+..++.
T Consensus 96 ---------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 96 ---------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred ---------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 122222222 336666666666552111 11111 34555555555554211 12334455
Q ss_pred CCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEE
Q 046992 189 LEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKL 268 (404)
Q Consensus 189 L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L 268 (404)
|++|++++|.+.+.....+. ..+..+++|+.|++++|.+++..... +...+..+++|++|
T Consensus 167 L~~L~l~~n~l~~~~~~~l~-------~~l~~~~~L~~L~L~~n~i~~~~~~~-------------l~~~~~~~~~L~~L 226 (319)
T cd00116 167 LKELNLANNGIGDAGIRALA-------EGLKANCNLEVLDLNNNGLTDEGASA-------------LAETLASLKSLEVL 226 (319)
T ss_pred cCEEECcCCCCchHHHHHHH-------HHHHhCCCCCEEeccCCccChHHHHH-------------HHHHhcccCCCCEE
Confidence 66666666555432111110 01223346666666666554322111 12223445566666
Q ss_pred EcCCCcCCCCCchhcc-----CCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcc
Q 046992 269 TLRENQLSGHLPRGLN-----SLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEG 343 (404)
Q Consensus 269 ~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 343 (404)
++++|.+++.....+. ..+.|++|++++|.++.... ..+...+..+++|+.+++++|+++.
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--------------~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--------------KDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--------------HHHHHHHhcCCCccEEECCCCCCcH
Confidence 6666666532222111 12566666666666642100 1133445666788888888888874
Q ss_pred c----CCCC-ccc-CCCChhhhccCcC
Q 046992 344 S----TPNS-AVF-RDAPLAALQKNKR 364 (404)
Q Consensus 344 ~----~p~~-~~~-~~l~~~~~~~n~~ 364 (404)
. .... ..+ +.++.+++.+|||
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 1111 222 5677777777764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.1e-18 Score=162.21 Aligned_cols=255 Identities=25% Similarity=0.214 Sum_probs=125.5
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCC------ccccccc
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSG------SIFLSWV 78 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~------~~~~~~~ 78 (404)
..+..|..+.+|++|+++++.+++..... .+..+...+.+++++++++.+.+ .++..+.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~---------------i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKA---------------LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHH---------------HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 34445566666777777777764221111 12224455556666666665541 1223445
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCC---CCEEECcCCcCCCCCccCCCCcccccCCccccCC-CCCCEEeCcccccc
Q 046992 79 TLSNFSRVYIYDNLLSGTISPFIGNLTS---LVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL-TNLRKLFLRHNNLS 154 (404)
Q Consensus 79 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~i~ 154 (404)
.+++|++|++++|.+.+..+..+..+.. |++|++++|++..... ..+...+..+ ++|++|++++|.++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------RLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------HHHHHHHHhCCCCceEEEcCCCcCC
Confidence 5566666666666655334444433333 6666666665541000 0112233444 56666666666665
Q ss_pred ccc----CccccC-CcccEEEcccCcCccCC-----CccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCc
Q 046992 155 GSL----PLSIGN-LTLSFLVLDTNQFTSYV-----PNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATL 224 (404)
Q Consensus 155 ~~~----~~~~~~-~~L~~L~l~~n~l~~~~-----~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L 224 (404)
+.. +..+.. .+|++|++++|.+.+.. ..+...++|+.|++++|.+.+.....+.. .+..+++|
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------~~~~~~~L 223 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-------TLASLKSL 223 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-------HhcccCCC
Confidence 221 122222 45666666666655311 12334456666666666654332222211 13455667
Q ss_pred cEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCC----CCchhccCCCCCCeEeCCCCccc
Q 046992 225 TFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSG----HLPRGLNSLIQLEYLDLSANSFS 300 (404)
Q Consensus 225 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 300 (404)
++|++++|.+++.....+... .....+.|++|++++|.++. .+...+..+++|+.+++++|.+.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~------------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASA------------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CEEecCCCcCchHHHHHHHHH------------HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 777777766654211111100 00023566666666666641 12334445566666666666665
Q ss_pred c
Q 046992 301 Q 301 (404)
Q Consensus 301 ~ 301 (404)
.
T Consensus 292 ~ 292 (319)
T cd00116 292 E 292 (319)
T ss_pred H
Confidence 3
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.4e-19 Score=142.45 Aligned_cols=164 Identities=30% Similarity=0.402 Sum_probs=134.1
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCC
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDN 91 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 91 (404)
++.+++.|.++.|+++ .+|.. ++.+.+|+.|++++|+|+ .+|..+..+++|+.|+++-|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppn-------------------ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPN-------------------IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN 89 (264)
T ss_pred chhhhhhhhcccCcee-ecCCc-------------------HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh
Confidence 4667788888888887 55555 777788888888888887 78888888999999999888
Q ss_pred cccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEE
Q 046992 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLV 170 (404)
Q Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~ 170 (404)
++. .+|..|+.++.|++||+.+|++... .+|..|..+..|+.|++++|.+. .+|..++. ++|+.|.
T Consensus 90 rl~-~lprgfgs~p~levldltynnl~e~-----------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 90 RLN-ILPRGFGSFPALEVLDLTYNNLNEN-----------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILS 156 (264)
T ss_pred hhh-cCccccCCCchhhhhhccccccccc-----------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEe
Confidence 887 7888899999999999988887732 57888888888888899998887 78888888 8888888
Q ss_pred cccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcC
Q 046992 171 LDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNC 210 (404)
Q Consensus 171 l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l 210 (404)
+++|.+.+++..++.+..|+.|++.+|++. .+|..++++
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 888888877778888888888888888876 566555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=5.3e-19 Score=140.49 Aligned_cols=180 Identities=26% Similarity=0.383 Sum_probs=124.7
Q ss_pred cCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 138 GNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
..+.+++.|.+++|+++ .+|..+.. .+|+.|++.+|.+.+++..+..+++|+.|+++-|++. ..|..
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprg---------- 97 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRG---------- 97 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccc----------
Confidence 34555666666666666 55555555 6666666666666666666677777777777777654 44544
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
|+.+|.|++||+.+|.+... .+|..|..+..|+-|.+++|.+. .+|..++.+++|+.|.+++
T Consensus 98 -fgs~p~levldltynnl~e~----------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 98 -FGSFPALEVLDLTYNNLNEN----------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred -cCCCchhhhhhccccccccc----------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence 46677788888888877543 34666666777777888888886 7788888888888888888
Q ss_pred CcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCC---CChhhhccCcCCC
Q 046992 297 NSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRD---APLAALQKNKRLC 366 (404)
Q Consensus 297 n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~---l~~~~~~~n~~~c 366 (404)
|.+.. .|..++.++.|++|++++|+++..+|+.+.+.- -.......|||.-
T Consensus 160 ndll~-------------------lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 160 NDLLS-------------------LPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred Cchhh-------------------CcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 87765 677788888888888888888877776654432 2344566788765
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=7.5e-14 Score=130.46 Aligned_cols=194 Identities=29% Similarity=0.383 Sum_probs=148.5
Q ss_pred CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP 134 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~ 134 (404)
.+.--...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..+.++..|.+++++.|+++ .+|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-------------~lp 137 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-------------HLP 137 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-------------cCC
Confidence 3445567888899887 78888888888888889888887 78888888999999999999888 677
Q ss_pred ccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCC
Q 046992 135 SSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISL 213 (404)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 213 (404)
..++.++ |+.|-+++|+++ .+|..++. ..|..|+.+.|.+..+++.++.+.+|+.|.+..|.+. .+|..+..+
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--- 211 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--- 211 (722)
T ss_pred hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC---
Confidence 7777665 888888888888 78888877 7888888888888887778888888888888888876 566555332
Q ss_pred CccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhcc---CCCCCC
Q 046992 214 TTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLN---SLIQLE 290 (404)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~ 290 (404)
.|..||++.|++. .+|..|.+|+.|++|-|.+|.+. ..|..+. ...-.+
T Consensus 212 ---------pLi~lDfScNkis------------------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 212 ---------PLIRLDFSCNKIS------------------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFK 263 (722)
T ss_pred ---------ceeeeecccCcee------------------ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeee
Confidence 4777888888876 56777778888888888888876 5554432 223345
Q ss_pred eEeCCCC
Q 046992 291 YLDLSAN 297 (404)
Q Consensus 291 ~L~L~~n 297 (404)
+|+..-|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 5666555
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=7e-12 Score=120.05 Aligned_cols=197 Identities=36% Similarity=0.515 Sum_probs=144.2
Q ss_pred EEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCC-CCCEEECcCCcCCCCCccCCCCcccccCCccccC
Q 046992 61 ELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLT-SLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGN 139 (404)
Q Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~ 139 (404)
.+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-------------~l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-------------SLPSPLRN 161 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-------------hhhhhhhc
Confidence 5777777764 22334555678888888888887 6666666664 8888888888887 56667788
Q ss_pred CCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcccc
Q 046992 140 LTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYF 218 (404)
Q Consensus 140 l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~ 218 (404)
+++|+.|++++|++. .+|..... +.|+.|++++|.+..++........|+.+.+++|... ..+.. +
T Consensus 162 l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-----------~ 228 (394)
T COG4886 162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-----------L 228 (394)
T ss_pred cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-----------h
Confidence 888888888888888 66666534 8888888888888876665556666888888888533 22222 3
Q ss_pred ccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCc
Q 046992 219 AFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANS 298 (404)
Q Consensus 219 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 298 (404)
..+..+..+.+.+|++.. ++..+..+++++.|++++|.++ .++. +..+.+++.|++++|.
T Consensus 229 ~~~~~l~~l~l~~n~~~~------------------~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 229 SNLKNLSGLELSNNKLED------------------LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred hhcccccccccCCceeee------------------ccchhccccccceecccccccc-cccc-ccccCccCEEeccCcc
Confidence 455667777777777652 2556677888999999999998 4444 7888999999999998
Q ss_pred ccccccc
Q 046992 299 FSQSIPE 305 (404)
Q Consensus 299 l~~~~~~ 305 (404)
++...+.
T Consensus 289 ~~~~~~~ 295 (394)
T COG4886 289 LSNALPL 295 (394)
T ss_pred ccccchh
Confidence 8866554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.3e-13 Score=128.93 Aligned_cols=102 Identities=27% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCcccc
Q 046992 83 FSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIG 162 (404)
Q Consensus 83 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 162 (404)
-...+++.|++. .+|..+..+-.|+.+.+..|.+. .+|..+..+..|..++++.|+++ .+|..+.
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-------------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC 141 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-------------TIPEAICNLEALTFLDLSSNQLS-HLPDGLC 141 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-------------ecchhhhhhhHHHHhhhccchhh-cCChhhh
Confidence 334445555554 44444444445555555555554 44555555555555555555554 4444444
Q ss_pred CCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcc
Q 046992 163 NLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRF 199 (404)
Q Consensus 163 ~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~ 199 (404)
...|+.|-+++|+++..+..++..+.|..|+.+.|.+
T Consensus 142 ~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 142 DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred cCcceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 4445555555555554444444444444444444443
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=3e-11 Score=115.67 Aligned_cols=198 Identities=29% Similarity=0.402 Sum_probs=128.7
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCC-CCCEEeCcccccccccCccccC
Q 046992 85 RVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLT-NLRKLFLRHNNLSGSLPLSIGN 163 (404)
Q Consensus 85 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~ 163 (404)
.+....+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-------------~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-------------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN 161 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-------------cCccccccchhhcccccccccchh-hhhhhhhc
Confidence 4666666653 22333445567777777777777 5666666663 7777777777777 55555555
Q ss_pred -CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccc
Q 046992 164 -LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNW 242 (404)
Q Consensus 164 -~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 242 (404)
+.|+.|++++|.+...+......+.|+.|++++|++. .+|..+ .....|+++++++|.+.
T Consensus 162 l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-----------~~~~~L~~l~~~~N~~~------- 222 (394)
T COG4886 162 LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-----------ELLSALEELDLSNNSII------- 222 (394)
T ss_pred cccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhh-----------hhhhhhhhhhhcCCcce-------
Confidence 7777777777777776554446677777777777765 444322 12334677777777422
Q ss_pred cccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCc
Q 046992 243 AKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIP 322 (404)
Q Consensus 243 ~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~ 322 (404)
..+..+..+..+..+.+.+|++. ..+..+..++++++|++++|.++. ++
T Consensus 223 -----------~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-------------------i~ 271 (394)
T COG4886 223 -----------ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-------------------IS 271 (394)
T ss_pred -----------ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-------------------cc
Confidence 34555666677777777777776 446666777777788777777764 22
Q ss_pred hhhccCCCCCEEECCCCcCcccCCCC
Q 046992 323 KCFEKMHGLSGIDMSYNELEGSTPNS 348 (404)
Q Consensus 323 ~~~~~l~~L~~L~l~~N~l~~~~p~~ 348 (404)
. +..+.+++.+++++|.++...|..
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred c-ccccCccCEEeccCccccccchhh
Confidence 2 777788888888888877555544
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=2e-12 Score=114.36 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=150.6
Q ss_pred hcCCCCCCcEEEcCCCCCCCc----ccccccCCCCCCEEEccCC---cccccCCc-------cccCCCCCCEEECcCCcC
Q 046992 52 FIGQLKSLFELDLSLNQLSGS----IFLSWVTLSNFSRVYIYDN---LLSGTISP-------FIGNLTSLVDLQLNSNQL 117 (404)
Q Consensus 52 ~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n---~l~~~~~~-------~~~~l~~L~~L~L~~n~l 117 (404)
.+..+..+++|+|++|.+... +...+.+.+.|+..++++- ++...+|+ ++..+++|++|+||+|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 356778899999999998633 3345667788888888763 22223443 344567899999999987
Q ss_pred CCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccC-------------ccccC-CcccEEEcccCcCccCCC--
Q 046992 118 IGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLP-------------LSIGN-LTLSFLVLDTNQFTSYVP-- 181 (404)
Q Consensus 118 ~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-------------~~~~~-~~L~~L~l~~n~l~~~~~-- 181 (404)
....+. .+..-+..+..|++|.|.+|.+....- ..... +.|+.+...+|++.....
T Consensus 105 G~~g~~--------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 105 GPKGIR--------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred CccchH--------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence 622110 122334567889999999888762211 11222 567777777777654332
Q ss_pred ---ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCcc
Q 046992 182 ---NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPME 258 (404)
Q Consensus 182 ---~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~ 258 (404)
.+...+.|+.+.+..|.+...-...+ ...+..+++|++||+.+|.++...... +...
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al-------~eal~~~~~LevLdl~DNtft~egs~~-------------Laka 236 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTAL-------AEALEHCPHLEVLDLRDNTFTLEGSVA-------------LAKA 236 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHH-------HHHHHhCCcceeeecccchhhhHHHHH-------------HHHH
Confidence 34445667777777776542211111 223566677777777777665332221 1223
Q ss_pred ccCCCCCCEEEcCCCcCCCCCchhc-----cCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCE
Q 046992 259 LGKLNSPTKLTLRENQLSGHLPRGL-----NSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSG 333 (404)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~ 333 (404)
+..+++|+.|++++|.+...-..++ ...|.|+.|.+.+|.|+..-. ..+..++...+.|..
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~--------------~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA--------------LALAACMAEKPDLEK 302 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH--------------HHHHHHHhcchhhHH
Confidence 4456677777787777764433322 245777777777777763100 013334566788999
Q ss_pred EECCCCcCc
Q 046992 334 IDMSYNELE 342 (404)
Q Consensus 334 L~l~~N~l~ 342 (404)
|+|++|++.
T Consensus 303 LnLngN~l~ 311 (382)
T KOG1909|consen 303 LNLNGNRLG 311 (382)
T ss_pred hcCCccccc
Confidence 999999983
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=7.2e-12 Score=108.75 Aligned_cols=225 Identities=21% Similarity=0.216 Sum_probs=146.4
Q ss_pred cCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCC
Q 046992 102 GNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVP 181 (404)
Q Consensus 102 ~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 181 (404)
..+++|.+|.+++..-- -=+.|-+...+|..+..+.+|..+.++.+.-.....-....+.|+++.+.+..++..+
T Consensus 179 df~~~l~~l~vs~~~~p----~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~- 253 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDP----IDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP- 253 (490)
T ss_pred HhhhheeEEEecCCCCC----CccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc-
Confidence 34567777777654311 0112222335666677788888888888875522222333388888888777665432
Q ss_pred ccCCCCCCCEEECCCCc-ccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCcccc
Q 046992 182 NICHSGLLEKYTNGNNR-FLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELG 260 (404)
Q Consensus 182 ~l~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~ 260 (404)
.+.....+.......-. ..|... ..+.....|+++|+++|.|+ .+.+.+.
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~-----------~~~dTWq~LtelDLS~N~I~------------------~iDESvK 304 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSAL-----------VSADTWQELTELDLSGNLIT------------------QIDESVK 304 (490)
T ss_pred cccchhhhcCccCCCCCccCCceE-----------EecchHhhhhhccccccchh------------------hhhhhhh
Confidence 22222222222111110 111111 11233457899999999987 3566667
Q ss_pred CCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccc---cccc--ceecCCCcCcccCchhhccCCCCCEEE
Q 046992 261 KLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIP---ELCN--LLNTAYNNLSSLIPKCFEKMHGLSGID 335 (404)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~--~L~l~~n~l~~~~~~~~~~l~~L~~L~ 335 (404)
-.|.++.|++++|.+. .+- .+..+++|+.|||++|.++...- .+.+ .|.+++|.|... ..+.++-+|..||
T Consensus 305 L~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD 380 (490)
T ss_pred hccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence 7888999999999997 333 37889999999999998874322 2333 899999988664 4577888999999
Q ss_pred CCCCcCcc--cCCCCcccCCCChhhhccCcC
Q 046992 336 MSYNELEG--STPNSAVFRDAPLAALQKNKR 364 (404)
Q Consensus 336 l~~N~l~~--~~p~~~~~~~l~~~~~~~n~~ 364 (404)
+++|+|.. .....+.+|-++.+.+.+||.
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99999975 345668899999999999993
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=7.9e-11 Score=118.28 Aligned_cols=112 Identities=24% Similarity=0.403 Sum_probs=91.2
Q ss_pred CCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc------cccceecCCCcCcccCchhhccCCCCCEEECC
Q 046992 264 SPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE------LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMS 337 (404)
Q Consensus 264 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 337 (404)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|. ..+.|++++|++++.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 367788888888888888888888888888888888877774 22378888888888899999999999999999
Q ss_pred CCcCcccCCCCc--ccCCCChhhhccCcCCCCCCCCCCCCC
Q 046992 338 YNELEGSTPNSA--VFRDAPLAALQKNKRLCSNVKGLDLAK 376 (404)
Q Consensus 338 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~~c~~~~~~~~~~ 376 (404)
+|++++.+|... .+..+..+++.+|+.+|+.+. +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence 999999988762 234566788999999998654 36674
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=4.7e-12 Score=112.06 Aligned_cols=246 Identities=17% Similarity=0.113 Sum_probs=140.1
Q ss_pred hhcCCCcCcEeeCCCCcCCCC----CCcccccCCccccccccch---------------hhhhcCCCCCCcEEEcCCCCC
Q 046992 9 QISNLSKLEYLYLPFNQLFGK----IPPEIGLLTHLKVTCTTWL---------------VYFFIGQLKSLFELDLSLNQL 69 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~~---------------~~~~l~~l~~L~~L~Ls~n~i 69 (404)
....+..++.+++++|.+... +.+.+.+.++|+.-+++.. ....+...++|++||||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 455678899999999988533 3344555667776665421 234556677888888888877
Q ss_pred CCcccc----cccCCCCCCEEEccCCcccccCCcc-------------ccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 70 SGSIFL----SWVTLSNFSRVYIYDNLLSGTISPF-------------IGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 70 ~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
....+. -+..+..|++|++.+|.+...-... .+.-+.|+++...+|++..... ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga--------~~ 176 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA--------TA 176 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH--------HH
Confidence 543332 3445778888888888775211111 1233455555555555441100 01
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCIS 212 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 212 (404)
+...|...+.|+.+.++.|.|....-.. ....+.+++.|++|++..|-++......++.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~a------------------l~eal~~~~~LevLdl~DNtft~egs~~Lak--- 235 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTA------------------LAEALEHCPHLEVLDLRDNTFTLEGSVALAK--- 235 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHH------------------HHHHHHhCCcceeeecccchhhhHHHHHHHH---
Confidence 2233344455555555555543110000 0014556777777777777665443333322
Q ss_pred CCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCC----CchhccCCCC
Q 046992 213 LTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGH----LPRGLNSLIQ 288 (404)
Q Consensus 213 L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~ 288 (404)
.+..+++|++|++++|.+.......+.. ..-...++|+.|.+.+|.++.. +..++...|.
T Consensus 236 ----aL~s~~~L~El~l~dcll~~~Ga~a~~~------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 236 ----ALSSWPHLRELNLGDCLLENEGAIAFVD------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred ----HhcccchheeecccccccccccHHHHHH------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 2456677888888888776543332211 0112367788888888887632 3344556788
Q ss_pred CCeEeCCCCcc
Q 046992 289 LEYLDLSANSF 299 (404)
Q Consensus 289 L~~L~L~~n~l 299 (404)
|+.|+|++|++
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 88888888888
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-11 Score=112.63 Aligned_cols=192 Identities=22% Similarity=0.168 Sum_probs=117.6
Q ss_pred hhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcc--cccccCCCCCCEE
Q 046992 9 QISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSI--FLSWVTLSNFSRV 86 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L 86 (404)
-=+++.+|+...|.++.+. ..+.. .....+++++.|||++|-+..-. ..-...+|+|+.|
T Consensus 116 kQsn~kkL~~IsLdn~~V~-~~~~~-----------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVE-DAGIE-----------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL 177 (505)
T ss_pred HhhhHHhhhheeecCcccc-ccchh-----------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence 3345667777777777664 32210 12567788888888888776332 2344578888888
Q ss_pred EccCCcccccCCc-cccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-C
Q 046992 87 YIYDNLLSGTISP-FIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-L 164 (404)
Q Consensus 87 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~ 164 (404)
+++.|++...... .-..+++|+.|.++.|+++.. .+......+|+|+.|++..|...........- .
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k-----------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWK-----------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQ 246 (505)
T ss_pred ccccccccCCccccchhhhhhhheEEeccCCCCHH-----------HHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence 8888877522111 122567788888888887721 23333456788888888888522121112222 5
Q ss_pred cccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCC-CchhhhcCCCCCccccccCCCccEEeCCCcccC
Q 046992 165 TLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGP-IPKSLRNCISLTTAYFAFYATLTFLDLSHNNFY 235 (404)
Q Consensus 165 ~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~ 235 (404)
.|+.|+|++|.+..... ....++.|..|+++.+.+... .|+. ... .-...+++|++|++..|++.
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s~-----~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-ESL-----DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc-cch-----hhhcccccceeeecccCccc
Confidence 68888888888776553 667778888888887776532 1211 000 00245678888888888874
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.4e-10 Score=96.17 Aligned_cols=124 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred CCCCEEEccCCcccccCCcccc-CCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCc
Q 046992 81 SNFSRVYIYDNLLSGTISPFIG-NLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPL 159 (404)
Q Consensus 81 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (404)
.++++|++.+|.++ .+ +.++ .+.+|+.|++++|+++ .+ +.+..++.|++|++++|+++ .+..
T Consensus 19 ~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-------------~l-~~l~~L~~L~~L~L~~N~I~-~i~~ 81 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-------------KL-EGLPGLPRLKTLDLSNNRIS-SISE 81 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----------------TT----TT--EEE--SS----S-CH
T ss_pred cccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-------------cc-cCccChhhhhhcccCCCCCC-cccc
Confidence 34455555555543 11 1232 2445555555555554 22 23444555555555555554 2222
Q ss_pred ccc-C-CcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeC
Q 046992 160 SIG-N-LTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDL 229 (404)
Q Consensus 160 ~~~-~-~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l 229 (404)
.+. . ++|+.|++++|++..+.. .+..+++|+.|++.+|.+... + .-+...+..+|+|+.||-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~-------~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K-------NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T-------THHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h-------hHHHHHHHHcChhheeCC
Confidence 221 2 455555555555544333 455666777777777766522 1 111222456677777764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=4.1e-11 Score=104.13 Aligned_cols=202 Identities=19% Similarity=0.163 Sum_probs=113.8
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+.-+.+|+.+.++.|.-. .+......-|.|+++...+..++. . +.+-.+..+.....+.-... +|.
T Consensus 210 l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~-~~l~pe~~~~D~~~~E~~t~-----------~G~ 275 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-V-PSLLPETILADPSGSEPSTS-----------NGS 275 (490)
T ss_pred hHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-c-ccccchhhhcCccCCCCCcc-----------CCc
Confidence 445667777777777533 122222234678888887766541 1 11212222222221111100 011
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
....+.....|+++|+++|.|+ .+.....- +.++.|++++|.+..+. .+..+++|+.|++++|.+. .+..|
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gw----- 347 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECVGW----- 347 (490)
T ss_pred eEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhH-hhhhh-----
Confidence 2222233455677777777776 55555544 67777777777776543 3666777777777777665 22211
Q ss_pred CCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCC-CchhccCCCCCC
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGH-LPRGLNSLIQLE 290 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~ 290 (404)
-..+.+.+.|.++.|.+.. -+.++.+-+|..|++++|+|... -...++.+|.|+
T Consensus 348 ------h~KLGNIKtL~La~N~iE~-------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 348 ------HLKLGNIKTLKLAQNKIET-------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred ------HhhhcCEeeeehhhhhHhh-------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 2345566777777776642 22345566778888888877631 234567888888
Q ss_pred eEeCCCCcccc
Q 046992 291 YLDLSANSFSQ 301 (404)
Q Consensus 291 ~L~L~~n~l~~ 301 (404)
.+.|.+|.+.+
T Consensus 403 ~l~L~~NPl~~ 413 (490)
T KOG1259|consen 403 TLRLTGNPLAG 413 (490)
T ss_pred HHhhcCCCccc
Confidence 88888888875
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=9.8e-10 Score=110.49 Aligned_cols=105 Identities=33% Similarity=0.477 Sum_probs=76.1
Q ss_pred CcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcccc
Q 046992 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIG 138 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~ 138 (404)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+++ +.+|..++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls------------g~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN------------GSIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC------------CCCchHHh
Confidence 667777777777777777777777777777777777777777777777777777777776 35666777
Q ss_pred CCCCCCEEeCcccccccccCccccC--CcccEEEcccCc
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIGN--LTLSFLVLDTNQ 175 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~~--~~L~~L~l~~n~ 175 (404)
.+++|+.|++++|.+++.+|..+.. .++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 7777777777777777777766654 345566666554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.3e-11 Score=108.93 Aligned_cols=210 Identities=21% Similarity=0.183 Sum_probs=142.9
Q ss_pred CCCCCCcEEEcCCCCCCCccc--ccccCCCCCCEEEccCCcccc--cCCccccCCCCCCEEECcCCcCCCCCccCCCCcc
Q 046992 54 GQLKSLFELDLSLNQLSGSIF--LSWVTLSNFSRVYIYDNLLSG--TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQF 129 (404)
Q Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~ 129 (404)
.++.+|+.+.|.++.+. ..+ .....|++++.|+++.|-+.. .+......+++|+.|+++.|++.....
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~------- 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS------- 189 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-------
Confidence 36788999999998876 333 366789999999999987753 233345678999999999998872110
Q ss_pred cccCCccccCCCCCCEEeCcccccccccCccccC--CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchh
Q 046992 130 RGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN--LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKS 206 (404)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~ 206 (404)
...-..+++|+.|.++.|.++..--..+.. +++..|++..|....... ...-+..|+.|++++|.+... +.
T Consensus 190 ----s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~- 263 (505)
T KOG3207|consen 190 ----SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQ- 263 (505)
T ss_pred ----ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-cc-
Confidence 011125788999999999887432222222 889999998885322222 445577889999999887622 11
Q ss_pred hhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCcc-----ccCCCCCCEEEcCCCcCCCC-Cc
Q 046992 207 LRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPME-----LGKLNSPTKLTLRENQLSGH-LP 280 (404)
Q Consensus 207 ~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~-----~~~l~~L~~L~L~~n~l~~~-~~ 280 (404)
....+.++.|+.|.++.+.+++.. +|+. ...+++|++|++..|++.+. ..
T Consensus 264 --------~~~~~~l~~L~~Lnls~tgi~si~----------------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 264 --------GYKVGTLPGLNQLNLSSTGIASIA----------------EPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred --------ccccccccchhhhhccccCcchhc----------------CCCccchhhhcccccceeeecccCcccccccc
Confidence 111466788889999888876531 2222 34578899999999998532 22
Q ss_pred hhccCCCCCCeEeCCCCcccc
Q 046992 281 RGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 281 ~~l~~l~~L~~L~L~~n~l~~ 301 (404)
..+..+++|+.|.+..|.+..
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhccchhhhhhcccccccc
Confidence 345567888888888888764
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.6e-10 Score=94.57 Aligned_cols=126 Identities=23% Similarity=0.258 Sum_probs=47.1
Q ss_pred cCCCCCCcEEEcCCCCCCCccccccc-CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWV-TLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
+.+..++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++ .+ +.+..++.|++|++++|+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~------------- 77 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRIS------------- 77 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----------------
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCC-------------
Confidence 44555678888888888732 2344 5778888888888887 33 35677888888888888887
Q ss_pred cCCccc-cCCCCCCEEeCcccccccccC-ccccC-CcccEEEcccCcCccCCC----ccCCCCCCCEEECC
Q 046992 132 FLPSSI-GNLTNLRKLFLRHNNLSGSLP-LSIGN-LTLSFLVLDTNQFTSYVP----NICHSGLLEKYTNG 195 (404)
Q Consensus 132 ~~~~~~-~~l~~L~~L~l~~n~i~~~~~-~~~~~-~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~ 195 (404)
.+...+ ..+++|++|++++|+|...-. ..+.. ++|+.|++.+|.+..... .+..+|+|+.||-.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 454444 357888888888888873211 23334 788888888888876544 45667888887753
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.7e-10 Score=110.89 Aligned_cols=242 Identities=25% Similarity=0.270 Sum_probs=130.4
Q ss_pred CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP 134 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~ 134 (404)
.+..++.+.+..|.+. .+...+..+.+|..+++.+|.+. .+...+..+++|++|++++|.|+ . -
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-------------~-i 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-------------K-L 133 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-------------c-c
Confidence 3445555556666555 22333555666666666666665 23332555666666666666665 1 1
Q ss_pred ccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCc-cCCCCCCCEEECCCCcccCCCchhhhcCCCC
Q 046992 135 SSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPN-ICHSGLLEKYTNGNNRFLGPIPKSLRNCISL 213 (404)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 213 (404)
..+..++.|+.|++.+|.+. .+...-..+.|+.+++++|.+..+... ...+..++.+++++|.+...-.
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--------- 203 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--------- 203 (414)
T ss_pred cchhhccchhhheeccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc---------
Confidence 23444555666666666665 222221125566666666666554332 3555566666666665542111
Q ss_pred CccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCC--CCCEEEcCCCcCCCCCchhccCCCCCCe
Q 046992 214 TTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLN--SPTKLTLRENQLSGHLPRGLNSLIQLEY 291 (404)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (404)
+..+..+..+++..|.++.. ..+..+. +|+.+++++|++. ..+..+..+..+..
T Consensus 204 ----~~~~~~l~~~~l~~n~i~~~-------------------~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~ 259 (414)
T KOG0531|consen 204 ----LDLLKKLVLLSLLDNKISKL-------------------EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPV 259 (414)
T ss_pred ----hHHHHHHHHhhcccccceec-------------------cCcccchhHHHHHHhcccCccc-cccccccccccccc
Confidence 12222333345555555421 1111222 3777888888876 44456667778888
Q ss_pred EeCCCCccccccc--cc--ccceecCCCcCccc---Cch-hhccCCCCCEEECCCCcCcccCC
Q 046992 292 LDLSANSFSQSIP--EL--CNLLNTAYNNLSSL---IPK-CFEKMHGLSGIDMSYNELEGSTP 346 (404)
Q Consensus 292 L~L~~n~l~~~~~--~~--~~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~N~l~~~~p 346 (404)
+++..|++...-. .. ...+....|.+... ... .....+.++.+.+.+|.+....+
T Consensus 260 l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 260 LDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchhhccccccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 8888887764221 11 11455556655532 111 14556788888899988765443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=9.8e-10 Score=113.08 Aligned_cols=44 Identities=25% Similarity=0.164 Sum_probs=27.1
Q ss_pred cccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 258 ELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
+..-.++|+.|.+.+|...+.+......+..++++.+..+.+.+
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 33445677778777776665665555666666665555555543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-09 Score=111.88 Aligned_cols=124 Identities=23% Similarity=0.170 Sum_probs=67.4
Q ss_pred CCcCcEeeCCCCcCCCCCCcccccCCccccccccch-------hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCE
Q 046992 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-------VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSR 85 (404)
Q Consensus 13 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (404)
....+...+-+|.+. .++... .++.|++|-+... ....|..++.|++||+++|.--+.+|..++.+.+||+
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 355666666666654 444332 2234444433221 2334556666666666665544456666666666666
Q ss_pred EEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccc
Q 046992 86 VYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHN 151 (404)
Q Consensus 86 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (404)
|+++++.++ .+|..++++..|.+|++..+.... .+|.....+.+|++|.+..-
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~------------~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE------------SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccc------------cccchhhhcccccEEEeecc
Confidence 666666665 566666666666666666554331 22333344666666655443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2e-09 Score=73.42 Aligned_cols=61 Identities=31% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcC
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQL 117 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 117 (404)
++|++|++++|.++...+..|..+++|++|++++|.++...+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755556777777777777777777766666777777777777777754
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=9.5e-10 Score=105.70 Aligned_cols=129 Identities=23% Similarity=0.196 Sum_probs=73.1
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+.+|+.|++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-------------- 153 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-------------- 153 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch--------------
Confidence 5566677777777777662 222255677777777777777532 23445566777777777766
Q ss_pred CCccccCCCCCCEEeCcccccccccCcc-ccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCccc
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLS-IGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFL 200 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~ 200 (404)
-...+..++.|+.+++++|++. .+... ... .+++.+.+..|.+..+. .+..+..+..+++..|.+.
T Consensus 154 ~~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 154 DISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred hccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccce
Confidence 1233445666777777777766 33321 223 56666666666665432 2222333333455555544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5.5e-09 Score=71.22 Aligned_cols=61 Identities=34% Similarity=0.403 Sum_probs=53.7
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcc
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLL 93 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 93 (404)
++|++|++++|++. .+|... |..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~------------------f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDS------------------FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTT------------------TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHH------------------HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57999999999998 555432 88999999999999999977788999999999999999975
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.73 E-value=1.4e-10 Score=111.71 Aligned_cols=108 Identities=29% Similarity=0.430 Sum_probs=65.6
Q ss_pred ccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCch-hccCCCCCCeEeCCCC
Q 046992 219 AFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPR-GLNSLIQLEYLDLSAN 297 (404)
Q Consensus 219 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n 297 (404)
.-++.++.|+|++|+++. ...+..++.|++|||++|.+. .+|. ...++. |+.|.+++|
T Consensus 184 qll~ale~LnLshNk~~~-------------------v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK-------------------VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HHHHHhhhhccchhhhhh-------------------hHHHHhcccccccccccchhc-cccccchhhhh-heeeeeccc
Confidence 344555666666666542 223445556666666666665 3332 222332 666666666
Q ss_pred cccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCC--CCcccCCCChhhhccCcCCCC
Q 046992 298 SFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTP--NSAVFRDAPLAALQKNKRLCS 367 (404)
Q Consensus 298 ~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~~~l~~~~~~~n~~~c~ 367 (404)
.++ .. ..+.++++|+.||+++|-+.+-.. ....+..+..+.++|||..|.
T Consensus 243 ~l~------------------tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 243 ALT------------------TL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHH------------------hh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 655 22 457888889999999988775322 224567788888999987664
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3e-08 Score=86.44 Aligned_cols=87 Identities=28% Similarity=0.260 Sum_probs=48.4
Q ss_pred CCCCCcEEEcCCCCCCC--cccccccCCCCCCEEEccCCcccccCCccc-cCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 55 QLKSLFELDLSLNQLSG--SIFLSWVTLSNFSRVYIYDNLLSGTISPFI-GNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
..+.++.+||.+|.|+. .+...+.++|.|++|+++.|.+...+ ..+ ....+|++|.|.+..+...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~----------- 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWT----------- 136 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChh-----------
Confidence 34566777777777652 22333446777777777777665211 122 2345666776666665421
Q ss_pred cCCccccCCCCCCEEeCccccc
Q 046992 132 FLPSSIGNLTNLRKLFLRHNNL 153 (404)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i 153 (404)
.....+..+|.+++|.++.|.+
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhcchhhhhhhhccchh
Confidence 2334445666666666666644
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=1.1e-07 Score=82.08 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=44.7
Q ss_pred CCCcCcEeeCCCCcCCCCCCccc----ccCCccccccccch---------------hhhhcCCCCCCcEEEcCCCCCCCc
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEI----GLLTHLKVTCTTWL---------------VYFFIGQLKSLFELDLSLNQLSGS 72 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~l~l~~~---------------~~~~l~~l~~L~~L~Ls~n~i~~~ 72 (404)
-+..+..++|++|.+...-.+.+ .+-.+|+..+++.. ....+.++|+|+..+||+|.|...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36677888888887754433333 33445555544321 233455666666666666665544
Q ss_pred ccc----cccCCCCCCEEEccCCcc
Q 046992 73 IFL----SWVTLSNFSRVYIYDNLL 93 (404)
Q Consensus 73 ~~~----~~~~l~~L~~L~l~~n~l 93 (404)
.|. -+.+-+.|.+|.+++|.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 332 233445566666666655
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=1.3e-08 Score=98.46 Aligned_cols=21 Identities=24% Similarity=0.050 Sum_probs=16.1
Q ss_pred ChhhcCCCcCcEeeCCCCcCC
Q 046992 7 SPQISNLSKLEYLYLPFNQLF 27 (404)
Q Consensus 7 p~~~~~l~~L~~L~l~~n~l~ 27 (404)
|=.+..++.|++|.+.++.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred CceeccccceeeEEecCcchh
Confidence 445667888888888888875
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.8e-08 Score=87.89 Aligned_cols=182 Identities=18% Similarity=0.115 Sum_probs=116.9
Q ss_pred CCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCc-CccCCC-
Q 046992 105 TSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQ-FTSYVP- 181 (404)
Q Consensus 105 ~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~- 181 (404)
+.|+++||+...++.. .+..-++.+.+|+.|.+.++++.+.+...++. ..|+.|+++.+. +++...
T Consensus 185 sRlq~lDLS~s~it~s-----------tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS-----------TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchhheeHH-----------HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence 4588888888877621 23334566788888888888888777777777 788888887764 333221
Q ss_pred -ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCcccc
Q 046992 182 -NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELG 260 (404)
Q Consensus 182 -~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~ 260 (404)
-+..+..|..|+++.|.........+. -.--++|+.|+++++.-.=.. . .+.....
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V---------~hise~l~~LNlsG~rrnl~~-s-------------h~~tL~~ 310 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAV---------AHISETLTQLNLSGYRRNLQK-S-------------HLSTLVR 310 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHH---------hhhchhhhhhhhhhhHhhhhh-h-------------HHHHHHH
Confidence 456778888888888776533221110 111256777777776421000 0 1122235
Q ss_pred CCCCCCEEEcCCC-cCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchh---hccCCCCCEEEC
Q 046992 261 KLNSPTKLTLREN-QLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKC---FEKMHGLSGIDM 336 (404)
Q Consensus 261 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l 336 (404)
.+++|.+|||++| .++......+..++.|++|.++.|... +|.. +...++|.+|++
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--------------------~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--------------------IPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--------------------ChHHeeeeccCcceEEEEe
Confidence 6888889999887 455455666778888999988888653 3432 566788888988
Q ss_pred CCCc
Q 046992 337 SYNE 340 (404)
Q Consensus 337 ~~N~ 340 (404)
-|+-
T Consensus 371 ~g~v 374 (419)
T KOG2120|consen 371 FGCV 374 (419)
T ss_pred cccc
Confidence 7753
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.6e-08 Score=85.37 Aligned_cols=184 Identities=22% Similarity=0.138 Sum_probs=87.2
Q ss_pred CCcEEEcCCCCCCCc-ccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCc-CCCCCccCCCCcccccCCc
Q 046992 58 SLFELDLSLNQLSGS-IFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQ-LIGHIPNLRQNQFRGFLPS 135 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~l~~n~~~~~~~~ 135 (404)
.|+++||+...|+.. +-..+..+.+|+.|.+.++++...+...+..-.+|+.|+++.+. ++.. .+.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-----------~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-----------ALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-----------HHHH
Confidence 366666666555422 22234455666666666666654444455555566666665543 2200 1111
Q ss_pred cccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCc
Q 046992 136 SIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTT 215 (404)
Q Consensus 136 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 215 (404)
-+..++.|.+|++++|.........+-. .--++|..|+++++.-. ..-..+.-
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~--------------------hise~l~~LNlsG~rrn-l~~sh~~t------ 307 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVA--------------------HISETLTQLNLSGYRRN-LQKSHLST------ 307 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHh--------------------hhchhhhhhhhhhhHhh-hhhhHHHH------
Confidence 2344555666666655544221111111 11234455555554311 00001111
Q ss_pred cccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchh---ccCCCCCCeE
Q 046992 216 AYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRG---LNSLIQLEYL 292 (404)
Q Consensus 216 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L 292 (404)
-...+|+|..||+++|..-.. . .-..+..++.|++|.++.|.. .+|.. +...|+|++|
T Consensus 308 -L~~rcp~l~~LDLSD~v~l~~--~--------------~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 308 -LVRRCPNLVHLDLSDSVMLKN--D--------------CFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYL 368 (419)
T ss_pred -HHHhCCceeeeccccccccCc--h--------------HHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEE
Confidence 135567777777777643110 0 112334566777777776643 33433 3456777777
Q ss_pred eCCCCc
Q 046992 293 DLSANS 298 (404)
Q Consensus 293 ~L~~n~ 298 (404)
++-++-
T Consensus 369 dv~g~v 374 (419)
T KOG2120|consen 369 DVFGCV 374 (419)
T ss_pred Eecccc
Confidence 776653
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=1.1e-07 Score=73.67 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=54.5
Q ss_pred cCCCCCCcEEEcCCCCCCCccccccc-CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWV-TLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
+.....|..++|++|.+. ..|..|. +.+.++.|++.+|.++ .+|..+..++.|+.|+++.|.+.
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~------------- 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN------------- 113 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-------------
Confidence 344556666677777766 3343333 4456677777777766 56666667777777777777666
Q ss_pred cCCccccCCCCCCEEeCcccccc
Q 046992 132 FLPSSIGNLTNLRKLFLRHNNLS 154 (404)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i~ 154 (404)
..|..+..+.++-.|+..+|.+.
T Consensus 114 ~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 114 AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cchHHHHHHHhHHHhcCCCCccc
Confidence 45555655666666666666655
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.3e-06 Score=76.51 Aligned_cols=110 Identities=25% Similarity=0.182 Sum_probs=72.1
Q ss_pred hhcCCCcCcEeeCCCCcCCCCC-Cccc-ccCCccccccccch-------hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 9 QISNLSKLEYLYLPFNQLFGKI-PPEI-GLLTHLKVTCTTWL-------VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~~-p~~l-~~l~~L~~l~l~~~-------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
.++..+-++.|.+.++.+-..- -..| ..+.+++.+++.|+ +...+.++|.|++|+++.|.+...+-..-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 3444445556666666553111 1122 24667777888764 3345679999999999999987443222146
Q ss_pred CCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCC
Q 046992 80 LSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLI 118 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 118 (404)
+.+|++|.+.+..+.- .....+..++.++.|.++.|.+.
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 7899999999988752 22345567888899999988544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=2.2e-06 Score=74.13 Aligned_cols=200 Identities=18% Similarity=0.063 Sum_probs=128.6
Q ss_pred hhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccc-----------
Q 046992 9 QISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSW----------- 77 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~----------- 77 (404)
++.+|++|+..+|+.|.+....|+.++.+ +.+-..|++|.+++|.+.-..-..+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~---------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK 151 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDL---------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK 151 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHH---------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh
Confidence 46688999999999998877777766554 7888999999999998752221122
Q ss_pred --cCCCCCCEEEccCCcccccCCc-----cccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcc
Q 046992 78 --VTLSNFSRVYIYDNLLSGTISP-----FIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRH 150 (404)
Q Consensus 78 --~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (404)
..-|.|++.....|++. ..+. .+..-..|+++.+..|.|.-.- ++..+-..+..+.+|+.|++++
T Consensus 152 Kaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpeg-------v~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 152 KAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEG-------VTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred hhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcch-------hHHHHHHHHHHhCcceeeeccc
Confidence 23578999999999885 2222 2344468899999988877110 0000111234567899999999
Q ss_pred cccccccCcc----ccC-CcccEEEcccCcCccCCC-------ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcccc
Q 046992 151 NNLSGSLPLS----IGN-LTLSFLVLDTNQFTSYVP-------NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYF 218 (404)
Q Consensus 151 n~i~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~-------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~ 218 (404)
|.++...... +.. +.|+.|.+.+|-++.... .-...++|..|...+|.+.+.+-..+ ++....-
T Consensus 224 Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~----~l~~~e~ 299 (388)
T COG5238 224 NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI----SLNEFEQ 299 (388)
T ss_pred cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee----chhhhhh
Confidence 9887433322 233 557888888887764332 11235777888888887665432211 1111222
Q ss_pred ccCCCccEEeCCCcccC
Q 046992 219 AFYATLTFLDLSHNNFY 235 (404)
Q Consensus 219 ~~~~~L~~L~l~~n~l~ 235 (404)
..+|.|..|.+.+|++.
T Consensus 300 ~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 300 DAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccHHHHHHHHccCcch
Confidence 55677888888888875
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.7e-05 Score=65.82 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=48.6
Q ss_pred cccCCCCCCEEeCcccccccccCccccC--CcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 136 SIGNLTNLRKLFLRHNNLSGSLPLSIGN--LTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 136 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~--~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
.|..++.|.+|.+.+|+|+ .+...+.. ++++.|.+.+|++..+.. .+..++.|++|.+-+|.+... .
T Consensus 59 ~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k--------~ 129 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK--------K 129 (233)
T ss_pred cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcc--------c
Confidence 3445566666666666666 33333333 556666666666655443 455666777777766665421 1
Q ss_pred CCCccccccCCCccEEeCCCc
Q 046992 212 SLTTAYFAFYATLTFLDLSHN 232 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n 232 (404)
.-+...+..+|+|+.||+..-
T Consensus 130 ~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CceeEEEEecCcceEeehhhh
Confidence 112223456677777776543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=2.9e-07 Score=71.33 Aligned_cols=110 Identities=25% Similarity=0.272 Sum_probs=79.4
Q ss_pred CCCcEEEcCCCCCCCccccc---ccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 57 KSLFELDLSLNQLSGSIFLS---WVTLSNFSRVYIYDNLLSGTISPFIG-NLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
..+..++|++|.+. .++.. +.+...|+..++++|.+. ..|..|. ..+.++++++++|.++ .
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-------------d 91 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-------------D 91 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-------------h
Confidence 45667888888875 34433 445566777788888887 5666554 3457888888888887 7
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCc
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPN 182 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~ 182 (404)
+|..+..++.|+.|+++.|.+. ..|..+.. .++.+|+..+|.+..++.+
T Consensus 92 vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 92 VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 7888888888888888888887 66777766 7777777777776654433
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.1e-05 Score=50.46 Aligned_cols=38 Identities=39% Similarity=0.565 Sum_probs=32.8
Q ss_pred CCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 263 NSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 263 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
++|++|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999999 677789999999999999999985
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=2e-06 Score=86.75 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=101.6
Q ss_pred CcCcEeeCCCCcCC-CCCCcccc-cCCccccccccch------hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCE
Q 046992 14 SKLEYLYLPFNQLF-GKIPPEIG-LLTHLKVTCTTWL------VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSR 85 (404)
Q Consensus 14 ~~L~~L~l~~n~l~-~~~p~~l~-~l~~L~~l~l~~~------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (404)
.+|++|++++.... ..=|..++ -||+|++|.+++. ......++++|..||+|+++++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57899999986532 12223333 4789999988763 234567899999999999999843 67889999999
Q ss_pred EEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-
Q 046992 86 VYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN- 163 (404)
Q Consensus 86 L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~- 163 (404)
|.+.+=.+.. ..-..+.++++|++||+|........ .+....-+.-..+|+|+.||.+++.+...+-..+-.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch------HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 9998877652 22235678999999999987765211 000011122345889999999998887554444333
Q ss_pred -CcccEEEc
Q 046992 164 -LTLSFLVL 171 (404)
Q Consensus 164 -~~L~~L~l 171 (404)
++|+.+.+
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 55555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.7e-05 Score=49.54 Aligned_cols=37 Identities=35% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLS 94 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 94 (404)
++|++|++++|.|+ .+|..+.+|++|++|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 44545667777777777777665
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=6.2e-05 Score=62.56 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS 136 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~ 136 (404)
.+...+||++|.+.. + ..|..++.|.+|.+++|+++.+.|.--..+++|.+|.+.+|++... . --.-
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l---------~--dl~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL---------G--DLDP 108 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh---------h--hcch
Confidence 355666666666641 1 2355566666666666666644444334455666666666666510 0 0122
Q ss_pred ccCCCCCCEEeCcccccccccC---ccccC-CcccEEEccc
Q 046992 137 IGNLTNLRKLFLRHNNLSGSLP---LSIGN-LTLSFLVLDT 173 (404)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~~~~~---~~~~~-~~L~~L~l~~ 173 (404)
+..+|.|++|.+-+|.++..-- -.+.. ++|+.||++.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3456666666666666652110 11222 5666666554
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.61 E-value=2.5e-05 Score=67.48 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=45.8
Q ss_pred hhhhhcCCCCCCcEEEcCCC--CCCCcccccccCCCCCCEEEccCCcccccCCc---cccCCCCCCEEECcCCcCC
Q 046992 48 LVYFFIGQLKSLFELDLSLN--QLSGSIFLSWVTLSNFSRVYIYDNLLSGTISP---FIGNLTSLVDLQLNSNQLI 118 (404)
Q Consensus 48 ~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~ 118 (404)
+....+..+++|++|.++.| ++.+.++.-...+++|+++++++|++.. +. .+..+.+|..|++.+|..+
T Consensus 56 tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 56 TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 34444667778888888888 5555555445566888888888888752 22 2345666777777777655
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00028 Score=66.16 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=15.0
Q ss_pred hcCCCcCcEeeCCCCcCCCCCC
Q 046992 10 ISNLSKLEYLYLPFNQLFGKIP 31 (404)
Q Consensus 10 ~~~l~~L~~L~l~~n~l~~~~p 31 (404)
+..+.++++|++++|.++ .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP 68 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP 68 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC
Confidence 344678888888888776 555
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=3.4e-05 Score=78.04 Aligned_cols=105 Identities=20% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCCcEEEcCCCCCC-Cccccccc-CCCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccC
Q 046992 57 KSLFELDLSLNQLS-GSIFLSWV-TLSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFL 133 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~-~~~~~~~~-~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~ 133 (404)
.+|++||+++...- ..-|..++ .+|.|+.|.+.+-.+.. .......++++|..||+|+++++ .+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-------------nl 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-------------NL 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-------------Cc
Confidence 57888888886532 22333333 57888888888766532 22233456788888888888877 22
Q ss_pred CccccCCCCCCEEeCcccccccccC--ccccC-CcccEEEcccCcC
Q 046992 134 PSSIGNLTNLRKLFLRHNNLSGSLP--LSIGN-LTLSFLVLDTNQF 176 (404)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~-~~L~~L~l~~n~l 176 (404)
.+++.+++|+.|.+.+=.+.. .. ..+.. ++|+.||+|....
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred -HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeecccccc
Confidence 567777888877777655541 11 12222 5566666655443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.00088 Score=62.93 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=18.6
Q ss_pred CCCCEEECCCCcCcccCCCCcccCCCChhhhccC
Q 046992 329 HGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKN 362 (404)
Q Consensus 329 ~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n 362 (404)
++|+.|++++|.... .|.. ...+++.+.+..+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~-LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEK-LPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccc-ccccCcEEEeccc
Confidence 468888888877552 2221 2256666666544
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.93 E-value=2.9e-05 Score=71.28 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=34.9
Q ss_pred cCCCCCCcEEEcCCCC-CCCcccccc-cCCCCCCEEEccCCc-ccccCCc-cccCCCCCCEEECcCCc
Q 046992 53 IGQLKSLFELDLSLNQ-LSGSIFLSW-VTLSNFSRVYIYDNL-LSGTISP-FIGNLTSLVDLQLNSNQ 116 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~ 116 (404)
-..++++++|++.++. ++...-..+ ..+++|+++++..|. ++...-. -...+++|++++++.+.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 4466777777777765 332222222 256777777777743 2221111 12346677777777664
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.0032 Score=49.64 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=27.9
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcC
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNS 114 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (404)
|.++.+|+.+.+.. .+......+|..+++|+.+.+.++ +......+|.+++.++.+.+..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 55666666666654 344344455666666666666654 4433344556665666666644
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=3.2e-05 Score=67.30 Aligned_cols=105 Identities=24% Similarity=0.250 Sum_probs=73.2
Q ss_pred CCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCc
Q 046992 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNL 92 (404)
Q Consensus 13 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 92 (404)
+.+.+.|++.+|.+.+ + + ...+|+.|++|.||-|+|+... .+..|++|++|+|..|.
T Consensus 18 l~~vkKLNcwg~~L~D-I--s------------------ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I--S------------------ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNC 74 (388)
T ss_pred HHHhhhhcccCCCccH-H--H------------------HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcc
Confidence 5567778888887762 2 1 1678999999999999998443 47789999999999999
Q ss_pred ccccC-CccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEe
Q 046992 93 LSGTI-SPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLF 147 (404)
Q Consensus 93 l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~ 147 (404)
|.... -..+.++++|++|.|..|.-.+.-+. ..=...+..+|+|++||
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~-------nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQ-------NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccch-------hHHHHHHHHcccchhcc
Confidence 86321 12467899999999998876633211 00012345677888775
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00068 Score=58.79 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=41.9
Q ss_pred ccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCC--cCCCCCccCCCCcccccCCccccCCCCCCEEeCcc
Q 046992 73 IFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSN--QLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRH 150 (404)
Q Consensus 73 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (404)
+......+..|+.+.+.+..++.. ..|..+++|+.|.++.| ++. +.++.....+++|+++++++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~------------~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVS------------GGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccc------------ccceehhhhCCceeEEeecC
Confidence 444445566777777777766522 34566777777777777 333 23333344557777777777
Q ss_pred cccc
Q 046992 151 NNLS 154 (404)
Q Consensus 151 n~i~ 154 (404)
|++.
T Consensus 101 Nki~ 104 (260)
T KOG2739|consen 101 NKIK 104 (260)
T ss_pred Cccc
Confidence 7775
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.57 E-value=0.0068 Score=47.77 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=58.2
Q ss_pred hhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEE
Q 046992 8 PQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVY 87 (404)
Q Consensus 8 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (404)
.+|.++.+|+.+.+.. .+. .+++. .|..+++|+.+.+..+ +......+|..+++++.+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~------------------~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~ 64 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGEN------------------AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESIT 64 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TT------------------TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEE
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChh------------------hccccccccccccccc-ccccceeeeeccccccccc
Confidence 3678888888888875 344 33332 2777878888888775 5545556788888888888
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcc
Q 046992 88 IYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRH 150 (404)
Q Consensus 88 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 150 (404)
+.+ .+.......|..+++|+.+.+..+ +. ..-...|.+. +|+.+.+..
T Consensus 65 ~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~------------~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 65 FPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT------------EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETS-TT-EE-TTTTTT-TTECEEEETTT--B------------EEHTTTTTT--T--EEE-TT
T ss_pred ccc-cccccccccccccccccccccCcc-cc------------EEchhhhcCC-CceEEEECC
Confidence 876 443344556777888888888654 33 0123445555 777777665
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00018 Score=62.81 Aligned_cols=59 Identities=17% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCC
Q 046992 56 LKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLI 118 (404)
Q Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 118 (404)
+.+.+.|+..+|.+.++ ....+++.|++|.|+-|.|+.. ..+.++++|++|+|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 34445555555555422 1223455555555555555422 22445555555555555544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.57 E-value=0.0017 Score=63.75 Aligned_cols=230 Identities=19% Similarity=0.077 Sum_probs=115.4
Q ss_pred CCCCCcEEEcCCCCCCCc--ccccccCCCCCCEEEccCC-cccccC----CccccCCCCCCEEECcCCc-CCCCCccCCC
Q 046992 55 QLKSLFELDLSLNQLSGS--IFLSWVTLSNFSRVYIYDN-LLSGTI----SPFIGNLTSLVDLQLNSNQ-LIGHIPNLRQ 126 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~l~~ 126 (404)
..+.|+.+.+.++.-... .-.....++.|+.|+++++ ...... ......+.+|+.|+++++. ++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd------- 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD------- 258 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-------
Confidence 467777787777743222 2234556788888888763 111111 1223445777788877776 331
Q ss_pred CcccccCCccc-cCCCCCCEEeCcccc-cccccCccccC--CcccEEEcccCcCccCC---CccCCCCCCCEEECCCCc-
Q 046992 127 NQFRGFLPSSI-GNLTNLRKLFLRHNN-LSGSLPLSIGN--LTLSFLVLDTNQFTSYV---PNICHSGLLEKYTNGNNR- 198 (404)
Q Consensus 127 n~~~~~~~~~~-~~l~~L~~L~l~~n~-i~~~~~~~~~~--~~L~~L~l~~n~l~~~~---~~l~~~~~L~~L~l~~n~- 198 (404)
..-..+ ..+++|++|.+.++. +++..-..+.. +.|++|+++.+...... .....+++++.+.+....
T Consensus 259 -----~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 259 -----IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG 333 (482)
T ss_pred -----hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC
Confidence 111112 236778888877666 45333333333 66888888776653211 123335555554433322
Q ss_pred ---ccCCCchhhhcC--CCCCccccccCCCccEEeCCCcccCccC-CccccccCCccEEEEecCccccCCCCCCEEEcCC
Q 046992 199 ---FLGPIPKSLRNC--ISLTTAYFAFYATLTFLDLSHNNFYNEL-SSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRE 272 (404)
Q Consensus 199 ---~~~~~~~~~~~l--~~L~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~ 272 (404)
+....-..+... ..+....+..+++++.+.+..+...... ...+.+|+.|. ..+ .........++.|+++.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l--~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL--ELRLCRSDSLRVLNLSD 410 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH--HHHhccCCccceEeccc
Confidence 110000111111 1344555677888888888877644333 34556666552 211 11111222367777777
Q ss_pred CcCCCC-CchhccC-CCCCCeEeCCCCcc
Q 046992 273 NQLSGH-LPRGLNS-LIQLEYLDLSANSF 299 (404)
Q Consensus 273 n~l~~~-~~~~l~~-l~~L~~L~L~~n~l 299 (404)
+..... .-..... +..++.+++.++..
T Consensus 411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 411 CRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CccccccchHHHhhhhhccccCCccCccc
Confidence 754311 1111111 55566666666654
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.40 E-value=0.0067 Score=31.44 Aligned_cols=20 Identities=50% Similarity=0.399 Sum_probs=11.0
Q ss_pred CCcEEEcCCCCCCCccccccc
Q 046992 58 SLFELDLSLNQLSGSIFLSWV 78 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~ 78 (404)
+|++||+++|.++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3556666666665 4554443
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.27 E-value=0.00065 Score=62.67 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=26.5
Q ss_pred CCCCCCEEEcCCCcCC-CCCchhccCCCCCCeEeCCCCcc
Q 046992 261 KLNSPTKLTLRENQLS-GHLPRGLNSLIQLEYLDLSANSF 299 (404)
Q Consensus 261 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l 299 (404)
.+..|..+.++++... +..-+.+..+++|+.+++-+++-
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4566777788877654 33455667778888888777754
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.0062 Score=31.56 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=17.5
Q ss_pred cCcEeeCCCCcCCCCCCccccc
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGL 36 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~ 36 (404)
+|++|++++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5899999999998 88877544
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.41 E-value=0.00017 Score=69.95 Aligned_cols=175 Identities=20% Similarity=0.147 Sum_probs=104.7
Q ss_pred hhcCCCCCCcEEEcCCCCCCCccc----ccccCC-CCCCEEEccCCccccc----CCccccCCCCCCEEECcCCcCCCCC
Q 046992 51 FFIGQLKSLFELDLSLNQLSGSIF----LSWVTL-SNFSRVYIYDNLLSGT----ISPFIGNLTSLVDLQLNSNQLIGHI 121 (404)
Q Consensus 51 ~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~ 121 (404)
..+...+.|..|++++|.+.+... ..+... ..+++|++..|.++.. +...+.....++.++++.|.+...
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~- 187 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL- 187 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh-
Confidence 346677788888888888764322 222222 4567777777777532 334455567788888888876410
Q ss_pred ccCCCCcccccCCccccCCCCCCEEeCcccccccccC----ccccC-Cc-ccEEEcccCcCccCC-----CccCCC-CCC
Q 046992 122 PNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLP----LSIGN-LT-LSFLVLDTNQFTSYV-----PNICHS-GLL 189 (404)
Q Consensus 122 ~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~-~~-L~~L~l~~n~l~~~~-----~~l~~~-~~L 189 (404)
...-+...++..+....++++|.+.+|.++.... ..+.. +. +..+++..|.+.+.. +.+..+ ..+
T Consensus 188 ---g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 188 ---GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred ---hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence 0000000122223346778888888888763221 12222 33 566888888876541 134444 667
Q ss_pred CEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCc
Q 046992 190 EKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYN 236 (404)
Q Consensus 190 ~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~ 236 (404)
+.++++.|.+...-...+.++ +..++.++++.++.|.+..
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~-------l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEV-------LVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhcCCccccchHHHHHH-------HhhhHHHHHhhcccCcccc
Confidence 888888888876655555443 3556688888888887754
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.94 E-value=0.0015 Score=55.76 Aligned_cols=64 Identities=16% Similarity=0.007 Sum_probs=35.3
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCC
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLI 118 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 118 (404)
|..++.+..||++.|.+. ..|..+..+..++.+++..|..+ ..|.+++..++++++++-++.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 444555555555555554 45555555555555555555554 45555555555555555555443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.23 E-value=0.0074 Score=59.25 Aligned_cols=60 Identities=13% Similarity=-0.011 Sum_probs=25.6
Q ss_pred CCCCCCEEeCcccc-cccccCccccC--CcccEEEcccCc-CccCCC--ccCCCCCCCEEECCCCc
Q 046992 139 NLTNLRKLFLRHNN-LSGSLPLSIGN--LTLSFLVLDTNQ-FTSYVP--NICHSGLLEKYTNGNNR 198 (404)
Q Consensus 139 ~l~~L~~L~l~~n~-i~~~~~~~~~~--~~L~~L~l~~n~-l~~~~~--~l~~~~~L~~L~l~~n~ 198 (404)
.+++|+.++++++. +++..-..+.. ++|+.|.+..+. +++..- ....++.|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555555 33222222222 445555544444 222111 22334445555555444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.33 E-value=0.067 Score=25.67 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=10.6
Q ss_pred CcCcEeeCCCCcCCCCCC
Q 046992 14 SKLEYLYLPFNQLFGKIP 31 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p 31 (404)
++|++|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 47999999999986 443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.82 E-value=0.00092 Score=64.90 Aligned_cols=190 Identities=22% Similarity=0.149 Sum_probs=113.7
Q ss_pred CcEEEcCCCCCCCccc----ccccCCCCCCEEEccCCcccccC----CccccCC-CCCCEEECcCCcCCCCCccCCCCcc
Q 046992 59 LFELDLSLNQLSGSIF----LSWVTLSNFSRVYIYDNLLSGTI----SPFIGNL-TSLVDLQLNSNQLIGHIPNLRQNQF 129 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~~~l~~n~~ 129 (404)
+..+.+.+|.+..... ..+...+.|..|++++|.+.... ...+... ..+++|++..|.++..-.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------- 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------- 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch-------
Confidence 7788888888764433 44556788888888888876322 1223333 557777777777662211
Q ss_pred cccCCccccCCCCCCEEeCcccccccc----cCcc----ccC-CcccEEEcccCcCccCCC-----ccCCCCC-CCEEEC
Q 046992 130 RGFLPSSIGNLTNLRKLFLRHNNLSGS----LPLS----IGN-LTLSFLVLDTNQFTSYVP-----NICHSGL-LEKYTN 194 (404)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~----~~~-~~L~~L~l~~n~l~~~~~-----~l~~~~~-L~~L~l 194 (404)
..+...+.....++.++++.|.+... ++.. +.. .++++|.+.+|.++...- .+...+. +..+++
T Consensus 162 -~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 162 -APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred -HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 13445556677888888888887421 1111 223 567788888887764221 3344444 556777
Q ss_pred CCCcccCCCchhhhcCCCCCccccccC-CCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCC
Q 046992 195 GNNRFLGPIPKSLRNCISLTTAYFAFY-ATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLREN 273 (404)
Q Consensus 195 ~~n~~~~~~~~~~~~l~~L~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n 273 (404)
..|.+.......... .+..+ +.++.++++.|.+++.....+ ...+..++.++.+.++.|
T Consensus 241 ~~n~l~d~g~~~L~~-------~l~~~~~~l~~l~l~~nsi~~~~~~~L-------------~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLP-------CLSVLSETLRVLDLSRNSITEKGVRDL-------------AEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HhcCcchHHHHHHHH-------HhcccchhhhhhhhhcCCccccchHHH-------------HHHHhhhHHHHHhhcccC
Confidence 777765432221111 12333 567888888888876544322 233445667777777777
Q ss_pred cCC
Q 046992 274 QLS 276 (404)
Q Consensus 274 ~l~ 276 (404)
.+.
T Consensus 301 ~l~ 303 (478)
T KOG4308|consen 301 PLT 303 (478)
T ss_pred ccc
Confidence 776
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.16 E-value=0.0067 Score=51.86 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=70.0
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+....+.+.||++.|++. ..-..|..++.|..|+++.|.+. ..|..++.+..++.+++..|..+ .
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-------------~ 102 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-------------Q 102 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-------------h
Confidence 667788888899888875 44455667788888888888887 77888888888888888877776 6
Q ss_pred CCccccCCCCCCEEeCccccccc
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSG 155 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~ 155 (404)
.|.+++..+++++++.-++.+..
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred CCccccccCCcchhhhccCcchH
Confidence 78888888888888888887663
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=0.069 Score=44.86 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=33.6
Q ss_pred cCcEeeCCCCcCCCCCCcccccCCccccccccch------hhhhcC-CCCCCcEEEcCCCC-CCCcccccccCCCCCCEE
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------VYFFIG-QLKSLFELDLSLNQ-LSGSIFLSWVTLSNFSRV 86 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~------~~~~l~-~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L 86 (404)
.++.+|-+++.|....-+.+.+++.++.+.+... -.+.+. -.++|+.|++++|. |+......+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566666666665443344444444444333221 111111 23455555555543 443333444455555555
Q ss_pred Ecc
Q 046992 87 YIY 89 (404)
Q Consensus 87 ~l~ 89 (404)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.24 E-value=0.44 Score=25.51 Aligned_cols=14 Identities=71% Similarity=0.698 Sum_probs=8.4
Q ss_pred CCCcEEEcCCCCCC
Q 046992 57 KSLFELDLSLNQLS 70 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~ 70 (404)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.24 E-value=0.44 Score=25.51 Aligned_cols=14 Identities=71% Similarity=0.698 Sum_probs=8.4
Q ss_pred CCCcEEEcCCCCCC
Q 046992 57 KSLFELDLSLNQLS 70 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~ 70 (404)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.62 E-value=0.11 Score=27.36 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=8.0
Q ss_pred CCCcEEEcCCCCCCCc
Q 046992 57 KSLFELDLSLNQLSGS 72 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~ 72 (404)
++|++|++++|.|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4566666666665533
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.68 E-value=0.88 Score=24.29 Aligned_cols=14 Identities=43% Similarity=0.479 Sum_probs=9.0
Q ss_pred CCCCEEEcCCCcCC
Q 046992 263 NSPTKLTLRENQLS 276 (404)
Q Consensus 263 ~~L~~L~L~~n~l~ 276 (404)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.68 E-value=0.88 Score=24.29 Aligned_cols=14 Identities=43% Similarity=0.479 Sum_probs=9.0
Q ss_pred CCCCEEEcCCCcCC
Q 046992 263 NSPTKLTLRENQLS 276 (404)
Q Consensus 263 ~~L~~L~L~~n~l~ 276 (404)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.57 E-value=0.12 Score=43.37 Aligned_cols=36 Identities=22% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCCCCEEEcCCC-cCCCCCchhccCCCCCCeEeCCCC
Q 046992 262 LNSPTKLTLREN-QLSGHLPRGLNSLIQLEYLDLSAN 297 (404)
Q Consensus 262 l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n 297 (404)
.++|+.|+|++| +|++.--..+..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 578899999988 677666677778888888877543
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.05 E-value=11 Score=36.33 Aligned_cols=102 Identities=22% Similarity=0.055 Sum_probs=58.2
Q ss_pred CcCcEeeCCCCcCCCCCCcccccC--C-ccccccccchhhhhcCC------CCCCcEEEcCCCCCCCcccccccC---CC
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLL--T-HLKVTCTTWLVYFFIGQ------LKSLFELDLSLNQLSGSIFLSWVT---LS 81 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l--~-~L~~l~l~~~~~~~l~~------l~~L~~L~Ls~n~i~~~~~~~~~~---l~ 81 (404)
+.+++++++.|.+..+.|-.|..= + ++++=.+ ...+|.. =..+.+++++.|.....+|..+.. -.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~l---sskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCEL---SSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhh---hhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 457888999998877776655322 1 1222111 1122222 234778888888877777654432 23
Q ss_pred CCCEEEccCCccc---ccCCccccCCCCCCEEECcCCcCC
Q 046992 82 NFSRVYIYDNLLS---GTISPFIGNLTSLVDLQLNSNQLI 118 (404)
Q Consensus 82 ~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~ 118 (404)
-++.++.+...+. ...+-.++.-++|...+++.|...
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 4667777666553 122333455567777777777654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.05 E-value=2.3 Score=22.94 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=13.2
Q ss_pred CCCCCEEECCCCcCc
Q 046992 328 MHGLSGIDMSYNELE 342 (404)
Q Consensus 328 l~~L~~L~l~~N~l~ 342 (404)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 468999999999996
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.34 E-value=2 Score=23.14 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.0
Q ss_pred CCCCEEECCCCcCcccCCC
Q 046992 329 HGLSGIDMSYNELEGSTPN 347 (404)
Q Consensus 329 ~~L~~L~l~~N~l~~~~p~ 347 (404)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46899999999998 4443
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.64 E-value=1.3 Score=51.29 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=32.5
Q ss_pred ecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC
Q 046992 311 NTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN 347 (404)
Q Consensus 311 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 347 (404)
||++|+|+.+.+..|..+++|+.|+|++|++.+....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999999889999999999999999999876554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.97 E-value=4.3 Score=22.17 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.2
Q ss_pred CCCCEEECCCCcCc
Q 046992 329 HGLSGIDMSYNELE 342 (404)
Q Consensus 329 ~~L~~L~l~~N~l~ 342 (404)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57899999999985
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.11 E-value=9.6 Score=44.75 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=27.8
Q ss_pred ECCCCcCcccCCCC-cccCCCChhhhccCcCCCCCCC
Q 046992 335 DMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 335 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
||++|+|+...+.. ..+++++.+++.+|||.|+|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 58889998554433 4577888999999999999865
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.79 E-value=7.2 Score=38.23 Aligned_cols=63 Identities=22% Similarity=0.150 Sum_probs=36.9
Q ss_pred CCCCCCEEeCccccccccc-CccccC--CcccEEEcccC--cCccCCCccC--CCCCCCEEECCCCcccCC
Q 046992 139 NLTNLRKLFLRHNNLSGSL-PLSIGN--LTLSFLVLDTN--QFTSYVPNIC--HSGLLEKYTNGNNRFLGP 202 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~-~~~~~~--~~L~~L~l~~n--~l~~~~~~l~--~~~~L~~L~l~~n~~~~~ 202 (404)
+.+.+..+.+++|++...- -..+.. ++|..|+|++| .+.... ++. ....|+.|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 4566777778888776211 112332 77888888887 333221 222 234467788888877644
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.78 E-value=19 Score=19.04 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=10.7
Q ss_pred CCCCCeEeCCCCc
Q 046992 286 LIQLEYLDLSANS 298 (404)
Q Consensus 286 l~~L~~L~L~~n~ 298 (404)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4788999999885
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.37 E-value=18 Score=35.53 Aligned_cols=40 Identities=23% Similarity=0.013 Sum_probs=18.0
Q ss_pred CCCCCcEEEcCCCCCCCccccccc--CCCCCCEEEccCCccc
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSWV--TLSNFSRVYIYDNLLS 94 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~ 94 (404)
..|+|+.|+|++|...-.....+. +...|++|.+.+|.+.
T Consensus 242 ~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 455666666666621111111222 2334556666666553
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.08 E-value=2.5e+02 Score=27.48 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=23.9
Q ss_pred CCCCCEEEcCCCcCC----CCCchhccCCCCCCeEeCCCCccc
Q 046992 262 LNSPTKLTLRENQLS----GHLPRGLNSLIQLEYLDLSANSFS 300 (404)
Q Consensus 262 l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~ 300 (404)
-+.+.+|++++|... -.+|..+..-..++.+..+.|...
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 356677777777442 245565555566777666666554
Done!