Query 046992
Match_columns 404
No_of_seqs 298 out of 3058
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.9E-46 1.7E-50 383.4 29.9 319 57-377 294-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-42 4.5E-47 357.8 25.5 360 3-363 213-715 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.9E-40 1E-44 332.2 28.5 367 2-370 45-565 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-39 5.8E-44 326.7 29.5 366 2-370 44-563 (606)
5 4eco_A Uncharacterized protein 100.0 2.2E-40 7.6E-45 334.0 20.8 296 55-369 247-604 (636)
6 1ziw_A TOLL-like receptor 3; i 100.0 6.3E-38 2.2E-42 319.4 34.5 369 2-370 37-627 (680)
7 3v47_A TOLL-like receptor 5B a 100.0 3.4E-38 1.2E-42 306.3 24.9 343 5-370 24-413 (455)
8 3t6q_A CD180 antigen; protein- 100.0 6.6E-37 2.3E-41 307.8 33.3 356 5-363 26-487 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 2.4E-38 8.3E-43 325.3 23.0 312 49-367 440-842 (876)
10 2z63_A TOLL-like receptor 4, v 100.0 2.4E-37 8.1E-42 308.8 28.0 363 2-370 40-536 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-37 3.8E-42 324.3 25.6 369 2-370 36-565 (844)
12 4eco_A Uncharacterized protein 100.0 5.3E-38 1.8E-42 316.7 21.9 324 2-344 195-602 (636)
13 2z7x_B TOLL-like receptor 1, v 100.0 4.8E-37 1.6E-41 303.3 24.6 357 5-370 14-486 (520)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-36 3.7E-41 302.7 23.1 359 5-369 19-514 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 9.8E-37 3.3E-41 313.5 21.9 344 2-366 437-865 (876)
16 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-36 2.1E-40 300.8 27.1 355 5-365 25-534 (606)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-35 3.5E-40 296.4 24.8 342 6-369 46-514 (562)
18 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-35 1.5E-39 298.5 29.0 345 5-363 18-441 (680)
19 2z63_A TOLL-like receptor 4, v 100.0 7.1E-35 2.4E-39 290.8 26.5 347 5-366 21-508 (570)
20 2id5_A Lingo-1, leucine rich r 100.0 4E-35 1.4E-39 286.4 22.4 105 264-368 225-336 (477)
21 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-34 1.1E-38 289.5 28.6 356 2-369 64-584 (635)
22 3v47_A TOLL-like receptor 5B a 100.0 2E-34 6.8E-39 279.8 25.8 336 2-350 42-416 (455)
23 2id5_A Lingo-1, leucine rich r 100.0 2.8E-34 9.7E-39 280.4 26.3 329 16-370 13-361 (477)
24 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-34 4.9E-39 300.9 24.2 359 5-366 18-518 (844)
25 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-34 1.4E-38 263.6 19.3 257 57-375 50-312 (313)
26 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-33 4.2E-38 280.7 21.3 337 2-347 38-515 (549)
27 3o6n_A APL1; leucine-rich repe 100.0 3.2E-33 1.1E-37 265.9 22.6 302 12-369 43-356 (390)
28 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-33 1.5E-37 275.0 23.0 325 2-346 33-485 (520)
29 3o6n_A APL1; leucine-rich repe 100.0 1.7E-32 5.9E-37 260.8 23.1 308 5-369 59-378 (390)
30 1o6v_A Internalin A; bacterial 100.0 1.1E-31 3.7E-36 261.3 28.1 320 13-366 45-389 (466)
31 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.2E-36 249.7 28.3 298 9-364 39-345 (347)
32 3oja_B Anopheles plasmodium-re 100.0 2E-32 6.8E-37 274.3 22.8 302 12-368 49-361 (597)
33 3oja_B Anopheles plasmodium-re 100.0 4.9E-32 1.7E-36 271.5 23.9 310 4-370 64-385 (597)
34 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-31 1E-35 267.6 27.3 350 5-367 45-557 (635)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.3E-31 1.8E-35 262.4 26.3 331 13-365 30-486 (562)
36 1ogq_A PGIP-2, polygalacturona 100.0 5.7E-32 2E-36 249.3 15.7 250 14-343 50-306 (313)
37 1o6v_A Internalin A; bacterial 100.0 3.3E-30 1.1E-34 250.8 27.3 299 35-365 43-366 (466)
38 1jl5_A Outer protein YOPM; leu 100.0 8E-31 2.7E-35 253.5 21.5 326 13-366 10-410 (454)
39 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-30 1.3E-34 239.3 25.1 245 4-301 17-278 (332)
40 4fmz_A Internalin; leucine ric 100.0 9.6E-30 3.3E-34 238.0 27.9 279 5-342 58-346 (347)
41 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5E-34 235.1 27.6 278 15-362 32-329 (330)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-29 6.2E-34 244.2 28.2 290 3-343 31-353 (457)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-28 5.7E-33 237.5 28.6 266 6-319 57-353 (457)
44 1jl5_A Outer protein YOPM; leu 100.0 5.6E-29 1.9E-33 240.6 25.1 339 4-367 24-431 (454)
45 1xku_A Decorin; proteoglycan, 100.0 1.8E-27 6.2E-32 221.0 27.0 274 5-340 45-330 (330)
46 3zyj_A Leucine-rich repeat-con 100.0 9.7E-28 3.3E-32 231.6 23.8 249 59-369 45-296 (440)
47 2z66_A Variable lymphocyte rec 100.0 2.5E-28 8.7E-33 224.3 18.9 274 16-370 9-292 (306)
48 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.8E-32 231.3 24.4 248 59-368 56-306 (452)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-27 6.3E-32 221.1 24.2 273 5-340 47-331 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.7E-33 229.6 16.5 172 12-199 29-210 (353)
51 2z80_A TOLL-like receptor 2, v 100.0 9.3E-29 3.2E-33 231.9 13.7 266 61-369 35-318 (353)
52 4fcg_A Uncharacterized protein 100.0 1.3E-27 4.3E-32 221.6 19.5 235 12-301 79-315 (328)
53 2z66_A Variable lymphocyte rec 100.0 2.3E-27 7.8E-32 217.9 20.7 251 60-369 10-265 (306)
54 4fcg_A Uncharacterized protein 100.0 3.3E-27 1.1E-31 218.8 21.0 226 55-342 79-314 (328)
55 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-26 3.8E-31 211.1 22.8 223 17-301 14-239 (285)
56 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 221.7 26.0 228 57-344 75-305 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 4.3E-26 1.5E-30 220.1 25.9 227 57-343 64-293 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-26 5.7E-31 210.0 19.1 251 59-370 13-266 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-28 9.4E-33 225.1 7.2 240 53-362 30-272 (317)
60 3oja_A Leucine-rich immune mol 99.9 3.5E-27 1.2E-31 230.1 13.2 248 53-370 30-287 (487)
61 1z7x_W Ribonuclease inhibitor; 99.9 4.3E-29 1.5E-33 242.6 -1.3 320 10-343 24-412 (461)
62 1wwl_A Monocyte differentiatio 99.9 5.3E-28 1.8E-32 222.7 6.0 81 261-343 226-310 (312)
63 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-29 3.7E-34 246.8 -6.6 338 13-365 2-411 (461)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-27 1.1E-31 217.9 8.1 250 9-348 29-282 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-24 1.2E-28 213.3 28.2 260 14-347 40-302 (622)
66 3oja_A Leucine-rich immune mol 99.9 8.6E-26 2.9E-30 220.3 13.6 243 5-337 21-270 (487)
67 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.3E-31 212.4 7.4 243 10-301 39-310 (312)
68 2z62_A TOLL-like receptor 4, v 99.9 3.4E-23 1.2E-27 187.2 22.0 208 57-302 28-239 (276)
69 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.5E-28 189.3 19.1 229 61-348 11-243 (276)
70 1p9a_G Platelet glycoprotein I 99.9 3.5E-23 1.2E-27 188.2 20.9 204 77-344 6-210 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.3E-27 201.6 26.7 250 58-366 41-298 (622)
72 2o6q_A Variable lymphocyte rec 99.9 2.8E-22 9.5E-27 180.5 22.5 205 81-346 16-222 (270)
73 3ogk_B Coronatine-insensitive 99.9 1.1E-25 3.9E-30 225.3 -0.4 341 12-365 110-526 (592)
74 1p9a_G Platelet glycoprotein I 99.9 3E-22 1E-26 182.1 22.0 204 10-301 6-209 (290)
75 3rfs_A Internalin B, repeat mo 99.9 8.3E-23 2.9E-27 184.2 14.9 220 58-348 20-241 (272)
76 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.5E-27 183.6 15.3 203 10-244 37-244 (272)
77 3goz_A Leucine-rich repeat-con 99.9 5.4E-24 1.8E-28 200.1 6.6 269 18-344 2-299 (362)
78 2o6q_A Variable lymphocyte rec 99.9 2.2E-21 7.5E-26 174.7 23.4 201 57-301 16-219 (270)
79 2ca6_A RAN GTPase-activating p 99.9 2.7E-24 9.3E-29 203.9 1.5 251 5-302 23-318 (386)
80 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.7E-27 184.9 13.9 233 58-343 65-308 (310)
81 4glp_A Monocyte differentiatio 99.9 8.7E-23 3E-27 187.7 10.7 205 55-301 89-308 (310)
82 3goz_A Leucine-rich repeat-con 99.9 7.4E-24 2.5E-28 199.1 2.8 259 1-302 9-299 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 8.1E-22 2.8E-26 174.2 15.0 178 15-236 32-219 (239)
84 3ogk_B Coronatine-insensitive 99.9 3E-24 1E-28 215.0 -1.5 318 15-344 139-528 (592)
85 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.6E-28 198.5 3.5 255 51-346 26-320 (386)
86 1h6u_A Internalin H; cell adhe 99.9 5.1E-21 1.8E-25 175.5 17.5 196 53-303 37-233 (308)
87 1h6u_A Internalin H; cell adhe 99.9 4.3E-21 1.5E-25 176.1 16.9 127 53-200 59-186 (308)
88 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.8E-27 189.0 5.2 128 57-197 70-205 (336)
89 2xwt_C Thyrotropin receptor; s 99.8 1.6E-20 5.5E-25 165.8 15.6 129 58-200 32-169 (239)
90 3m19_A Variable lymphocyte rec 99.8 8.6E-20 2.9E-24 162.4 20.2 179 14-237 14-194 (251)
91 2ast_B S-phase kinase-associat 99.8 6.7E-22 2.3E-26 183.8 4.3 169 16-198 49-233 (336)
92 2p1m_B Transport inhibitor res 99.8 1.5E-22 5.1E-27 202.7 -0.1 329 12-364 103-518 (594)
93 3m19_A Variable lymphocyte rec 99.8 1.8E-19 6E-24 160.4 18.6 165 5-202 28-194 (251)
94 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.9E-24 169.7 17.2 230 5-298 23-257 (350)
95 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.7E-24 169.1 15.5 234 61-340 13-257 (350)
96 2o6s_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 153.6 15.6 178 16-245 9-188 (208)
97 3cvr_A Invasion plasmid antige 99.8 8.4E-19 2.9E-23 172.7 16.7 186 58-302 60-245 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.4E-23 171.4 17.4 184 82-330 60-255 (571)
99 2p1m_B Transport inhibitor res 99.8 3.3E-21 1.1E-25 192.9 -1.4 333 9-364 61-493 (594)
100 2o6s_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 151.5 13.4 168 5-211 21-189 (208)
101 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.5E-23 157.5 14.1 172 10-236 42-214 (291)
102 1h6t_A Internalin B; cell adhe 99.8 7.2E-19 2.4E-23 159.9 10.0 173 53-301 42-214 (291)
103 1m9s_A Internalin B; cell inva 99.8 6.8E-18 2.3E-22 167.9 17.2 153 53-239 61-214 (605)
104 1m9s_A Internalin B; cell inva 99.7 4.9E-18 1.7E-22 169.0 12.9 173 53-278 39-212 (605)
105 2v9t_B SLIT homolog 2 protein 99.7 3.8E-17 1.3E-21 142.2 16.2 149 17-200 14-165 (220)
106 2xot_A Amphoterin-induced prot 99.7 7.1E-18 2.4E-22 158.1 12.5 177 107-344 20-204 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 4.4E-17 1.5E-21 141.7 16.6 154 16-203 13-169 (220)
108 4ezg_A Putative uncharacterize 99.7 8.9E-18 3.1E-22 143.6 11.7 152 54-235 41-194 (197)
109 3e6j_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 140.8 17.8 154 15-203 20-175 (229)
110 3e6j_A Variable lymphocyte rec 99.7 3.9E-17 1.3E-21 143.0 15.3 141 4-178 32-173 (229)
111 2xot_A Amphoterin-induced prot 99.7 4.3E-17 1.5E-21 152.8 15.7 176 16-236 20-203 (361)
112 1xeu_A Internalin C; cellular 99.7 6.3E-18 2.2E-22 151.2 9.0 170 55-301 17-186 (263)
113 2v9t_B SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 141.5 13.8 141 5-178 25-166 (220)
114 1dce_A Protein (RAB geranylger 99.7 3.4E-20 1.1E-24 183.4 -7.4 210 78-336 346-567 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 5.9E-17 2E-21 140.9 13.9 143 4-178 24-167 (220)
116 4ezg_A Putative uncharacterize 99.7 8.8E-17 3E-21 137.4 12.7 130 53-199 62-193 (197)
117 1xeu_A Internalin C; cellular 99.7 2.4E-16 8.1E-21 141.0 13.5 170 12-237 17-187 (263)
118 1w8a_A SLIT protein; signaling 99.7 3.7E-16 1.3E-20 132.9 13.1 117 219-370 51-167 (192)
119 1dce_A Protein (RAB geranylger 99.7 2.4E-18 8.3E-23 170.1 -1.6 182 11-237 346-548 (567)
120 4b8c_D Glucose-repressible alc 99.7 2.4E-17 8.2E-22 167.9 5.5 218 57-343 173-405 (727)
121 4b8c_D Glucose-repressible alc 99.7 4E-17 1.4E-21 166.3 6.0 164 14-208 173-337 (727)
122 2ell_A Acidic leucine-rich nuc 99.7 4.4E-16 1.5E-20 129.4 11.0 133 13-179 23-162 (168)
123 2je0_A Acidic leucine-rich nuc 99.6 9.4E-16 3.2E-20 124.7 8.9 126 13-172 16-148 (149)
124 1w8a_A SLIT protein; signaling 99.6 6.3E-15 2.2E-19 125.2 14.3 127 17-177 11-139 (192)
125 2wfh_A SLIT homolog 2 protein 99.6 3.4E-15 1.2E-19 127.0 12.4 128 167-343 13-140 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 124.0 9.7 132 54-199 21-159 (168)
127 3sb4_A Hypothetical leucine ri 99.6 5.6E-15 1.9E-19 136.6 9.9 215 56-294 100-328 (329)
128 2wfh_A SLIT homolog 2 protein 99.6 4.3E-14 1.5E-18 120.1 14.3 125 17-176 13-138 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.6 7.8E-15 2.7E-19 122.8 9.4 133 9-177 14-153 (176)
130 2je0_A Acidic leucine-rich nuc 99.6 7.4E-15 2.5E-19 119.4 8.3 111 55-179 15-128 (149)
131 3sb4_A Hypothetical leucine ri 99.5 1.9E-14 6.6E-19 133.0 11.2 261 37-336 24-328 (329)
132 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.6E-18 114.8 14.7 86 57-154 28-113 (177)
133 2o6r_A Variable lymphocyte rec 99.5 2.9E-13 1E-17 113.2 14.3 131 59-204 9-141 (177)
134 4fdw_A Leucine rich hypothetic 99.5 2.8E-12 9.6E-17 121.3 21.0 222 52-299 153-382 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 7.6E-14 2.6E-18 116.8 8.3 109 53-179 15-128 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 3.9E-16 1.3E-20 133.4 -7.1 140 53-235 44-185 (198)
137 4fdw_A Leucine rich hypothetic 99.4 6.7E-12 2.3E-16 118.7 19.7 170 51-252 130-306 (401)
138 3g39_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 110.3 10.9 109 223-369 10-119 (170)
139 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.4E-20 130.2 -5.8 127 100-252 43-180 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 108.0 12.2 107 15-155 10-116 (170)
141 4fs7_A Uncharacterized protein 99.4 1E-11 3.6E-16 117.5 18.9 267 8-295 65-374 (394)
142 2r9u_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 107.6 12.1 104 16-154 14-118 (174)
143 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 108.3 11.0 107 224-368 14-121 (174)
144 2ifg_A High affinity nerve gro 99.2 3.4E-11 1.2E-15 111.9 10.2 87 254-342 23-116 (347)
145 3un9_A NLR family member X1; l 99.2 8.4E-13 2.9E-17 123.7 -2.0 171 14-207 72-259 (372)
146 4fs7_A Uncharacterized protein 99.2 1.1E-09 3.6E-14 103.7 18.6 239 51-297 65-330 (394)
147 3un9_A NLR family member X1; l 99.2 9.2E-13 3.2E-17 123.4 -2.5 141 141-301 101-253 (372)
148 4gt6_A Cell surface protein; l 99.2 8.2E-09 2.8E-13 97.5 23.3 251 52-341 82-369 (394)
149 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.3E-15 106.9 9.8 88 53-154 27-116 (347)
150 4gt6_A Cell surface protein; l 99.1 6.4E-09 2.2E-13 98.3 20.3 293 9-341 58-390 (394)
151 2ra8_A Uncharacterized protein 98.9 5.1E-10 1.7E-14 104.0 3.8 40 262-301 278-321 (362)
152 4h09_A Hypothetical leucine ri 98.6 2.1E-06 7.2E-11 80.4 19.5 103 217-339 235-343 (379)
153 2ra8_A Uncharacterized protein 98.6 8.2E-09 2.8E-13 95.9 2.1 58 53-113 168-227 (362)
154 1io0_A Tropomodulin; LRR prote 98.6 3.9E-09 1.3E-13 88.6 -1.0 66 53-118 61-136 (185)
155 4h09_A Hypothetical leucine ri 98.6 4.2E-06 1.4E-10 78.3 19.1 78 218-297 259-343 (379)
156 1io0_A Tropomodulin; LRR prote 98.4 7E-08 2.4E-12 80.9 2.6 119 50-176 29-163 (185)
157 3rw6_A Nuclear RNA export fact 98.2 3.9E-07 1.3E-11 80.4 2.8 88 54-148 167-258 (267)
158 3e4g_A ATP synthase subunit S, 98.1 5.6E-07 1.9E-11 73.8 1.6 84 57-152 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 3.3E-06 1.1E-10 74.4 5.9 105 52-170 136-257 (267)
160 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.5E-11 70.3 1.8 84 80-175 60-150 (176)
161 3rfe_A Platelet glycoprotein I 97.5 0.00011 3.8E-09 57.2 4.7 40 330-369 32-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00022 7.6E-09 59.4 1.2 64 55-118 39-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00054 1.8E-08 57.1 2.8 89 139-234 68-169 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.0032 1.1E-07 48.8 5.8 58 267-344 12-70 (130)
165 2lz0_A Uncharacterized protein 55.9 15 0.00052 26.3 4.3 45 69-114 8-52 (100)
166 2lz0_A Uncharacterized protein 40.5 36 0.0012 24.2 4.3 47 92-151 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-46 Score=383.37 Aligned_cols=319 Identities=30% Similarity=0.436 Sum_probs=243.5
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEECcCCcCCCCCcc------------
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPF-IGNLTSLVDLQLNSNQLIGHIPN------------ 123 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~------------ 123 (404)
++|++|++++|.+++..|..|..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|.
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 56666666666666556666666666666666666665445543 55566666666665555433321
Q ss_pred ---------------------------CCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCc
Q 046992 124 ---------------------------LRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQ 175 (404)
Q Consensus 124 ---------------------------l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~ 175 (404)
+++|.+++.+|..+..+++|++|++++|++++..|..+.. ++|+.|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 4455555566677777777777777777777677777766 777777777777
Q ss_pred CccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC-------------ccccccCCCccEEeCCCcccCccCCcc
Q 046992 176 FTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT-------------TAYFAFYATLTFLDLSHNNFYNELSSN 241 (404)
Q Consensus 176 l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~ 241 (404)
+.+..+ .+..+++|+.|++++|.+.+.+|.++.++++|+ +.++..+++|++|++++|++.+.+|..
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 776555 667777788888888877777777777777666 445677788888888888888888888
Q ss_pred ccccCCccEEEE-------ecCcc--------------------------------------------------------
Q 046992 242 WAKCAKLGSLNF-------SIPME-------------------------------------------------------- 258 (404)
Q Consensus 242 ~~~l~~L~~L~l-------~~p~~-------------------------------------------------------- 258 (404)
+..+++|+.|++ .+|..
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 888888888877 33332
Q ss_pred --------------ccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc------ccceecCCCcCc
Q 046992 259 --------------LGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL------CNLLNTAYNNLS 318 (404)
Q Consensus 259 --------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~ 318 (404)
+..+++|+.|++++|++++.+|..++.++.|+.|+|++|.+++.+|.. .+.|++++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 334577999999999999999999999999999999999999988862 238999999999
Q ss_pred ccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCCCCCCCCC
Q 046992 319 SLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVKGLDLAKW 377 (404)
Q Consensus 319 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~~~~~ 377 (404)
+.+|..+.++++|++|++++|+++|.+|...++.++...++.|||.+||.+. ..|..
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~ 750 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDP 750 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCS
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCC
Confidence 9999999999999999999999999999999999999999999999999875 45753
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-42 Score=357.80 Aligned_cols=360 Identities=28% Similarity=0.371 Sum_probs=208.8
Q ss_pred ccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhh---hcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 3 FGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYF---FIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 3 ~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~---~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
+|.+|. |+++++|++|++++|.+++.+|..++.+++|++|+++.+... ....+++|++|++++|.+++.+|..+..
T Consensus 213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG 291 (768)
T ss_dssp CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCT
T ss_pred CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHh
Confidence 444444 556666666666666665555555666666666655442100 0115566666666666666566666655
Q ss_pred C-CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc-------------CCCCcccccCCccccCCC-CCC
Q 046992 80 L-SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN-------------LRQNQFRGFLPSSIGNLT-NLR 144 (404)
Q Consensus 80 l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------l~~n~~~~~~~~~~~~l~-~L~ 144 (404)
. ++|++|++++|.+++..|..|+.+++|++|++++|++.+.+|. +++|.+++.+|..+..++ +|+
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 4 7788888888877777777788888888888888877655542 667777777776666554 555
Q ss_pred EEeCcccccccccCc--------------------------cccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCC
Q 046992 145 KLFLRHNNLSGSLPL--------------------------SIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGN 196 (404)
Q Consensus 145 ~L~l~~n~i~~~~~~--------------------------~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~ 196 (404)
+|++++|.+++.+|. .+.. ++|++|++++|.+.+..+ .+..+++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 555555555443333 3333 344444444444443333 344444444444444
Q ss_pred CcccCCCchhhhcCCCCC-------------ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-------ecC
Q 046992 197 NRFLGPIPKSLRNCISLT-------------TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-------SIP 256 (404)
Q Consensus 197 n~~~~~~~~~~~~l~~L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------~~p 256 (404)
|.+.+.+|..+..+++|+ +..+..+++|++|++++|++++.+|.++..+++|+.|++ .+|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 444444444444444333 233444555555555555555555555555555555555 445
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCchhc-----------------------------------------------------
Q 046992 257 MELGKLNSPTKLTLRENQLSGHLPRGL----------------------------------------------------- 283 (404)
Q Consensus 257 ~~~~~l~~L~~L~L~~n~l~~~~~~~l----------------------------------------------------- 283 (404)
..+..+++|+.|++++|++.+.+|..+
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 555556666666666665554444322
Q ss_pred -----------------cCCCCCCeEeCCCCccccccccc------ccceecCCCcCcccCchhhccCCCCCEEECCCCc
Q 046992 284 -----------------NSLIQLEYLDLSANSFSQSIPEL------CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 284 -----------------~~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
..+++|+.|++++|.+++.+|.. .+.|++++|++++.+|..|+++++|+.|||++|+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 22345566666666666655541 1267777777777777777777777777777777
Q ss_pred CcccCCCC-cccCCCChhhhccCc
Q 046992 341 LEGSTPNS-AVFRDAPLAALQKNK 363 (404)
Q Consensus 341 l~~~~p~~-~~~~~l~~~~~~~n~ 363 (404)
++|.+|.. ..++.++.+++++|+
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSE
T ss_pred ccCcCChHHhCCCCCCEEECcCCc
Confidence 77666654 556777777777775
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-40 Score=332.22 Aligned_cols=367 Identities=20% Similarity=0.186 Sum_probs=238.5
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
+++..|.+|+++++|++|++++|.+.+..|..|+++++|++|+++.+ .+..|.++++|++|++++|.+++..+..
T Consensus 45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcch
Confidence 44555677788888888888888877667777888888888877643 4566777777777777777777555666
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc--------------CCCC---------------
Q 046992 77 WVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN--------------LRQN--------------- 127 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------l~~n--------------- 127 (404)
+..+++|++|++++|.+++.....+..+++|++|++++|.+++..+. +++|
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence 77777777777777777643323333466666666666665532221 2233
Q ss_pred ------------------------------------------------------------cccccCCccccCCCCCCEEe
Q 046992 128 ------------------------------------------------------------QFRGFLPSSIGNLTNLRKLF 147 (404)
Q Consensus 128 ------------------------------------------------------------~~~~~~~~~~~~l~~L~~L~ 147 (404)
.+++..+..|..+++|++|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 33333334466677788888
Q ss_pred CcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCch-hhhcCCCCC----------
Q 046992 148 LRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPK-SLRNCISLT---------- 214 (404)
Q Consensus 148 l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~---------- 214 (404)
+++|.++ .+|..+.. ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.++. .+..+++|+
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 8888777 66766666 778888888887776655 666677777777777776655443 355555555
Q ss_pred -----ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-------ecC-ccccCCCCCCEEEcCCCcCCCCCch
Q 046992 215 -----TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-------SIP-MELGKLNSPTKLTLRENQLSGHLPR 281 (404)
Q Consensus 215 -----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------~~p-~~~~~l~~L~~L~L~~n~l~~~~~~ 281 (404)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++ ..+ ..+..+++|++|++++|.+.+..+.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 123566677777777777777766777777777777776 112 2355666666666666666655565
Q ss_pred hccCCCCCCeEeCCCCcccc---------------------------ccccc------ccceecCCCcCcccCchhhccC
Q 046992 282 GLNSLIQLEYLDLSANSFSQ---------------------------SIPEL------CNLLNTAYNNLSSLIPKCFEKM 328 (404)
Q Consensus 282 ~l~~l~~L~~L~L~~n~l~~---------------------------~~~~~------~~~L~l~~n~l~~~~~~~~~~l 328 (404)
.+..+++|++|++++|.+++ ..|.. .+.|++++|++++..|..|.++
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 66666666666666666554 22221 1156666666666666666666
Q ss_pred CCCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCCCCCC
Q 046992 329 HGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 329 ~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+.| .|++++|++++.+|.. ..+++++.+++.+||+.|+|..
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 666 6666666666555443 4578889999999999998763
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-39 Score=326.69 Aligned_cols=366 Identities=22% Similarity=0.170 Sum_probs=274.1
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
+++..|.+|+++++|++|++++|.+++..|..|+++++|++|+++.+ .|..|.++++|++|++++|.+++..+..
T Consensus 44 l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 123 (606)
T 3vq2_A 44 LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC
T ss_pred cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc
Confidence 45556668888999999999999888777888888999999888653 4677888899999999999888666677
Q ss_pred ccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCcc----------------CCCCcccccCCcc---
Q 046992 77 WVTLSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPN----------------LRQNQFRGFLPSS--- 136 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------l~~n~~~~~~~~~--- 136 (404)
+..+++|++|++++|.+.+ .+|..|.++++|++|++++|++++..+. +++|.+++..+..
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence 8888999999999988875 4688888889999999988887754321 2333333211111
Q ss_pred -----------------------------------------------------------------------------ccC
Q 046992 137 -----------------------------------------------------------------------------IGN 139 (404)
Q Consensus 137 -----------------------------------------------------------------------------~~~ 139 (404)
+..
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 283 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGG
T ss_pred ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccccc
Confidence 222
Q ss_pred CC----------------------CCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCC
Q 046992 140 LT----------------------NLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNN 197 (404)
Q Consensus 140 l~----------------------~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n 197 (404)
++ +|++|++++|.+. .+|. +..++|+.|++++|...... .+..+++|++|++++|
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~-~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPT-LDLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRN 360 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCC-CCCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSS
T ss_pred CCCCCEEEecCccchhhhhccccccCCEEEcccccCc-cccc-CCCCccceeeccCCcCccch-hhccCCCCCEEECcCC
Confidence 23 3333333333332 3331 11144444444444222211 4456677888888888
Q ss_pred cccCC--CchhhhcCCCCC------------ccccccCCCccEEeCCCcccCccCC-ccccccCCccEEEE-------ec
Q 046992 198 RFLGP--IPKSLRNCISLT------------TAYFAFYATLTFLDLSHNNFYNELS-SNWAKCAKLGSLNF-------SI 255 (404)
Q Consensus 198 ~~~~~--~~~~~~~l~~L~------------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l-------~~ 255 (404)
.+.+. .+..+..+++|+ +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++ ..
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 77654 367777777776 2356778899999999999988877 68889999999998 45
Q ss_pred CccccCCCCCCEEEcCCCcCCC-CCchhccCCCCCCeEeCCCCccccccccc------ccceecCCCcCcccCchhhccC
Q 046992 256 PMELGKLNSPTKLTLRENQLSG-HLPRGLNSLIQLEYLDLSANSFSQSIPEL------CNLLNTAYNNLSSLIPKCFEKM 328 (404)
Q Consensus 256 p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~~~~~~~~~~l 328 (404)
|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|.. .+.|++++|++++..|..|.++
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 6778899999999999999986 37888999999999999999999877752 2389999999999999999999
Q ss_pred CCCCEEECCCCcCcccCCCCcccC-CCChhhhccCcCCCCCCC
Q 046992 329 HGLSGIDMSYNELEGSTPNSAVFR-DAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 329 ~~L~~L~l~~N~l~~~~p~~~~~~-~l~~~~~~~n~~~c~~~~ 370 (404)
++|+.|++++|+++..++....++ +++.+++.+||+.|+|..
T Consensus 521 ~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999996555556666 599999999999999875
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-40 Score=333.98 Aligned_cols=296 Identities=21% Similarity=0.256 Sum_probs=185.0
Q ss_pred CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCc-ccc-cCCccccCC------CCCCEEECcCCcCCCCCccCCC
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNL-LSG-TISPFIGNL------TSLVDLQLNSNQLIGHIPNLRQ 126 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~l~~ 126 (404)
++++|++|++++|.+.+.+|..|.++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------- 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------- 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--------
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--------
Confidence 44444444444444444444444444444444444444 443 344444333 44444444444444
Q ss_pred CcccccCCc--cccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCC-CCEEECCCCcccCC
Q 046992 127 NQFRGFLPS--SIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGL-LEKYTNGNNRFLGP 202 (404)
Q Consensus 127 n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~-L~~L~l~~n~~~~~ 202 (404)
.+|. .++.+++|++|++++|++++.+| .+.. ++|++|++++|.+..++..+..+++ |+.|++++|.+. .
T Consensus 319 -----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 319 -----TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp -----SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred -----ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c
Confidence 3444 44555555555555555544444 3333 4455555555544433334444444 555555554444 3
Q ss_pred CchhhhcCC--CCC-------------ccccc-------cCCCccEEeCCCcccCccCCccccccCCccEEEE------e
Q 046992 203 IPKSLRNCI--SLT-------------TAYFA-------FYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------S 254 (404)
Q Consensus 203 ~~~~~~~l~--~L~-------------~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~ 254 (404)
+|..+..+. +|+ +..+. .+++|+.|++++|.++...+..+..+++|+.|++ .
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 443332221 111 11123 5568999999999998555555667899999988 4
Q ss_pred cCccccC--------CCCCCEEEcCCCcCCCCCchhcc--CCCCCCeEeCCCCcccccccc-cc-----cceec------
Q 046992 255 IPMELGK--------LNSPTKLTLRENQLSGHLPRGLN--SLIQLEYLDLSANSFSQSIPE-LC-----NLLNT------ 312 (404)
Q Consensus 255 ~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~-~~-----~~L~l------ 312 (404)
+|..+.. +++|++|++++|+++ .+|..+. .+++|++|+|++|.+++ +|. +. +.|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 5543322 238999999999998 7888776 99999999999999998 553 32 27888
Q ss_pred CCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCC
Q 046992 313 AYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 369 (404)
++|.+.+.+|..+.++++|+.|++++|++ +.+|.. ..++++.+++++||+.|-..
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEEC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccccH
Confidence 56888999999999999999999999999 466655 34899999999999998554
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.3e-38 Score=319.38 Aligned_cols=369 Identities=23% Similarity=0.245 Sum_probs=216.8
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
+++..|.+|+++++|++|++++|.+++..|..++++++|++|+++.+ .+..|.++++|++|++++|.+++..+..
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 116 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCT
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhH
Confidence 34445556888888888888888887777777888888888887643 3345777888888888888887666677
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc--------------CCCCcccccCCc-------
Q 046992 77 WVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN--------------LRQNQFRGFLPS------- 135 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------l~~n~~~~~~~~------- 135 (404)
|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+. +++|.+++..|.
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 196 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh
Confidence 78888888888888887766677777777777777777776643321 344444433332
Q ss_pred --------------------------------------------cccCCC--CCCEEeCcccccccccCccccC-CcccE
Q 046992 136 --------------------------------------------SIGNLT--NLRKLFLRHNNLSGSLPLSIGN-LTLSF 168 (404)
Q Consensus 136 --------------------------------------------~~~~l~--~L~~L~l~~n~i~~~~~~~~~~-~~L~~ 168 (404)
.+..++ +|++|++++|.+++..+..+.. ++|++
T Consensus 197 L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccE
Confidence 222222 2555555555555444444444 55555
Q ss_pred EEcccCcCccCCC----------------------------------ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC
Q 046992 169 LVLDTNQFTSYVP----------------------------------NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT 214 (404)
Q Consensus 169 L~l~~n~l~~~~~----------------------------------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 214 (404)
|++++|.+.+..+ .+..+++|++|++++|.+.+..+..+.++++|+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356 (680)
T ss_dssp EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCc
Confidence 5555555443322 122334455555555555444444444433333
Q ss_pred c-----------------------------------------cccccCCCccEEeCCCcccCccCC-ccccccCCccEEE
Q 046992 215 T-----------------------------------------AYFAFYATLTFLDLSHNNFYNELS-SNWAKCAKLGSLN 252 (404)
Q Consensus 215 ~-----------------------------------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 252 (404)
. ..+..+++|+.|++++|.+.+.++ ..+..+++|+.|+
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 1 123333444444444444433222 2333333333333
Q ss_pred E---------------------------------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcc
Q 046992 253 F---------------------------------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSF 299 (404)
Q Consensus 253 l---------------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 299 (404)
+ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 3 1234456667788888888887766666677777777777777776
Q ss_pred cccccc--------------cccc------------------------eecCCCcCcccCchhhccCCCCCEEECCCCcC
Q 046992 300 SQSIPE--------------LCNL------------------------LNTAYNNLSSLIPKCFEKMHGLSGIDMSYNEL 341 (404)
Q Consensus 300 ~~~~~~--------------~~~~------------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 341 (404)
++..+. ..+. |++++|+++++.+..|.++++|+.|++++|++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 643110 1114 44444555444444445555555555555555
Q ss_pred cccCCCC-c-ccCCCChhhhccCcCCCCCCC
Q 046992 342 EGSTPNS-A-VFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 342 ~~~~p~~-~-~~~~l~~~~~~~n~~~c~~~~ 370 (404)
++..+.. . .+++++.+++.+|||.|+|..
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CccChhHhcccccccCEEEccCCCcccCCcc
Confidence 5433322 1 578899999999999999864
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-38 Score=306.31 Aligned_cols=343 Identities=17% Similarity=0.170 Sum_probs=269.7
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch------hhhhcCCCCCCcEEEcCCCCCCCccccccc
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------VYFFIGQLKSLFELDLSLNQLSGSIFLSWV 78 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (404)
.+|. + .++|++|++++|.+++..|..++++++|++|+++.+ .+..|.++++|++|++++|.+++..|..|.
T Consensus 24 ~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 24 QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 4565 2 278999999999999888999999999999999754 356789999999999999999988899999
Q ss_pred CCCCCCEEEccCCcccccCCcc--ccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc-ccCCCCCCEEeCccccccc
Q 046992 79 TLSNFSRVYIYDNLLSGTISPF--IGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS-IGNLTNLRKLFLRHNNLSG 155 (404)
Q Consensus 79 ~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i~~ 155 (404)
++++|++|++++|.+++..+.. |..+++|++|++++|++++ ..|.. +..+++|++|++++|++++
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK------------IQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS------------CCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc------------cCcccccCCCCcccEEeCCCCcccc
Confidence 9999999999999998644444 8999999999999999983 33554 7899999999999999997
Q ss_pred ccCccccC---CcccEEEcccCcCccCCC-c--------cCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCC
Q 046992 156 SLPLSIGN---LTLSFLVLDTNQFTSYVP-N--------ICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYAT 223 (404)
Q Consensus 156 ~~~~~~~~---~~L~~L~l~~n~l~~~~~-~--------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~ 223 (404)
..+..+.. ..++.|++++|.+....+ . +..+++|+.|++++|.+.+..|..+... ...++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~--------~~~~~ 240 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA--------IAGTK 240 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH--------TTTCC
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc--------ccccc
Confidence 77777765 689999999999987665 2 3356889999999999987777766443 11244
Q ss_pred ccEEeCCCcccCcc----------CCccccc--cCCccEEEE-------ecCccccCCCCCCEEEcCCCcCCCCCchhcc
Q 046992 224 LTFLDLSHNNFYNE----------LSSNWAK--CAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGLN 284 (404)
Q Consensus 224 L~~L~l~~n~l~~~----------~~~~~~~--l~~L~~L~l-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 284 (404)
|+.|++++|...+. .+..+.. .++|+.+++ ..|..+..+++|++|++++|++.+..+..+.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 55555555432211 1111111 134555555 3456677888889999999988877778888
Q ss_pred CCCCCCeEeCCCCccccccccc------ccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChh
Q 046992 285 SLIQLEYLDLSANSFSQSIPEL------CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLA 357 (404)
Q Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~ 357 (404)
.+++|++|++++|.+++..|.. .+.|++++|.+++..|..|.++++|++|++++|++++..+.. ..+++++.+
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 8889999999999888766543 228889999998888889999999999999999998766544 578899999
Q ss_pred hhccCcCCCCCCC
Q 046992 358 ALQKNKRLCSNVK 370 (404)
Q Consensus 358 ~~~~n~~~c~~~~ 370 (404)
++.+||+.|+++.
T Consensus 401 ~l~~N~l~~~~~~ 413 (455)
T 3v47_A 401 WLHTNPWDCSCPR 413 (455)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EccCCCcccCCCc
Confidence 9999999998873
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.6e-37 Score=307.79 Aligned_cols=356 Identities=17% Similarity=0.159 Sum_probs=245.6
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
.+|..+. +.+++|++++|.+++..|..|+++++|++|+++.+ .+..|.++++|++|++++|.+++..|..|..
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 5776665 47999999999999888899999999999999764 5778999999999999999999888999999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCC-Ccc-----------CCCCcccccCCccccCCCCCC--E
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGH-IPN-----------LRQNQFRGFLPSSIGNLTNLR--K 145 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-----------l~~n~~~~~~~~~~~~l~~L~--~ 145 (404)
+++|++|++++|.+++..+..+..+++|++|++++|++++. .|. +++|.+++..+..+..+++|+ +
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 99999999999999976678899999999999999999863 232 778888877788888899988 8
Q ss_pred EeCcccccccccCccccCC----------------------------------------------------cccEEEccc
Q 046992 146 LFLRHNNLSGSLPLSIGNL----------------------------------------------------TLSFLVLDT 173 (404)
Q Consensus 146 L~l~~n~i~~~~~~~~~~~----------------------------------------------------~L~~L~l~~ 173 (404)
|++++|.+++..|..+... +++.|++++
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 8888888876554433211 455566666
Q ss_pred CcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC-------------ccccccCCCccEEeCCCcccCccCC
Q 046992 174 NQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT-------------TAYFAFYATLTFLDLSHNNFYNELS 239 (404)
Q Consensus 174 n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~ 239 (404)
|.+.+..+ .+..+++|+.|++++|.+. .+|..+..+++|+ +..+..+++|+.|++++|.+.+.++
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred CccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 66665555 4566666777777776665 5555555555554 2345556666666666666654433
Q ss_pred c-cccccCCccEEEE------e---cCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc--c-
Q 046992 240 S-NWAKCAKLGSLNF------S---IPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE--L- 306 (404)
Q Consensus 240 ~-~~~~l~~L~~L~l------~---~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~- 306 (404)
. .+..+++|+.|++ . .+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+. +
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 3 3566666666666 1 134455666666666666666555555566666666666666666544332 1
Q ss_pred ----ccceecCCCcCcccCchhhccCCCCCEEECCCCcCccc-CC---CCcccCCCChhhhccCc
Q 046992 307 ----CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGS-TP---NSAVFRDAPLAALQKNK 363 (404)
Q Consensus 307 ----~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~p---~~~~~~~l~~~~~~~n~ 363 (404)
.+.|++++|.+++..|..|..+++|+.|++++|++++. ++ ....+++++.+++.+|.
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 12556666666655555555566666666666655541 11 12344555555555554
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-38 Score=325.34 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=210.7
Q ss_pred hhhhcCCCCCCcEEEcCCCCCCC-----------------ccccccc--CCCCCCEEEccCCcccccCCccccCCCCCCE
Q 046992 49 VYFFIGQLKSLFELDLSLNQLSG-----------------SIFLSWV--TLSNFSRVYIYDNLLSGTISPFIGNLTSLVD 109 (404)
Q Consensus 49 ~~~~l~~l~~L~~L~Ls~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 109 (404)
+|..+.++++|++|+|++|.+++ .+|..++ .+++|++|++++|.+.+.+|..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44556666666666666666654 2555544 6666666666666655566666666666666
Q ss_pred EECcCCc-CCC-CCc--------------c-----CCCCcccccCCc--cccCCCCCCEEeCcccccccccCccccC-Cc
Q 046992 110 LQLNSNQ-LIG-HIP--------------N-----LRQNQFRGFLPS--SIGNLTNLRKLFLRHNNLSGSLPLSIGN-LT 165 (404)
Q Consensus 110 L~L~~n~-l~~-~~~--------------~-----l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~ 165 (404)
|++++|+ +++ .+| . +++|.++ .+|. .+..+++|+.|++++|+++ .+| .+.. ++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 6666665 544 221 1 4455555 5666 6777777777777777777 666 5555 67
Q ss_pred ccEEEcccCcCccCCCccCCCCC-CCEEECCCCcccCCCchhhhcCCC--CCcc----------------ccc--cCCCc
Q 046992 166 LSFLVLDTNQFTSYVPNICHSGL-LEKYTNGNNRFLGPIPKSLRNCIS--LTTA----------------YFA--FYATL 224 (404)
Q Consensus 166 L~~L~l~~n~l~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~~----------------~~~--~~~~L 224 (404)
|+.|++++|.+..++..+..+++ |+.|++++|.+. .+|..+..+.. |+.. .+. .+++|
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 77777777777754446666666 777777777766 55655443321 2100 011 23478
Q ss_pred cEEeCCCcccCccCCccccccCCccEEEE------ecCccccCC--------CCCCEEEcCCCcCCCCCchhcc--CCCC
Q 046992 225 TFLDLSHNNFYNELSSNWAKCAKLGSLNF------SIPMELGKL--------NSPTKLTLRENQLSGHLPRGLN--SLIQ 288 (404)
Q Consensus 225 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~p~~~~~l--------~~L~~L~L~~n~l~~~~~~~l~--~l~~ 288 (404)
+.|++++|.++...+..+..+++|+.|++ .+|..+... ++|++|+|++|+++ .+|..+. .+++
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence 88999999887443334457888999888 455544332 38999999999998 7788776 8999
Q ss_pred CCeEeCCCCcccccccccc-----cceecCC------CcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChh
Q 046992 289 LEYLDLSANSFSQSIPELC-----NLLNTAY------NNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLA 357 (404)
Q Consensus 289 L~~L~L~~n~l~~~~~~~~-----~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~ 357 (404)
|+.|+|++|.+++.+..+. +.|++++ |.+.+.+|..|.++++|+.|+|++|++ +.+|.. ..++++.+
T Consensus 755 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~L 832 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYIL 832 (876)
T ss_dssp CCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEE
T ss_pred cCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEE
Confidence 9999999999987433322 2787765 888888999999999999999999999 566665 34789999
Q ss_pred hhccCcCCCC
Q 046992 358 ALQKNKRLCS 367 (404)
Q Consensus 358 ~~~~n~~~c~ 367 (404)
++++|++..-
T Consensus 833 dLs~N~l~~i 842 (876)
T 4ecn_A 833 DIADNPNISI 842 (876)
T ss_dssp ECCSCTTCEE
T ss_pred ECCCCCCCcc
Confidence 9999987653
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=308.75 Aligned_cols=363 Identities=21% Similarity=0.201 Sum_probs=259.3
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
+++..|.+|+++++|++|++++|.+++..|..++++++|++|+++++ .+..|.++++|++|++++|.++...+..
T Consensus 40 l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 119 (570)
T 2z63_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119 (570)
T ss_dssp CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS
T ss_pred cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc
Confidence 34455667888888888888888888666777888888888888653 4567888888888888888887655556
Q ss_pred ccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCcc----------------CCCCcccccCC-----
Q 046992 77 WVTLSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPN----------------LRQNQFRGFLP----- 134 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------l~~n~~~~~~~----- 134 (404)
+..+++|++|++++|.+++ .+|..|.++++|++|++++|++++..+. +++|.+.+..+
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 8888888888888888875 3678888888888888888887643221 33444433322
Q ss_pred ----------------------------------------------------------------------------cccc
Q 046992 135 ----------------------------------------------------------------------------SSIG 138 (404)
Q Consensus 135 ----------------------------------------------------------------------------~~~~ 138 (404)
..+.
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 279 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence 2333
Q ss_pred CCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCC----
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT---- 214 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~---- 214 (404)
.+++|++|++++|.++ .+|..+...+|++|++++|.+..++. ..+++|+.|++++|.+.+..+. ..+++|+
T Consensus 280 ~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp GGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred CcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 3445555555555554 34443333355555555555543222 2334444444444444332221 2233333
Q ss_pred -----------ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE------ec-C-ccccCCCCCCEEEcCCCcC
Q 046992 215 -----------TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SI-P-MELGKLNSPTKLTLRENQL 275 (404)
Q Consensus 215 -----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~-p-~~~~~l~~L~~L~L~~n~l 275 (404)
+..+..+++|++|++++|.+.+..+. +..+++|+.|++ .. + ..+..+++|++|++++|.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 12345677788888888877665444 788888888887 22 2 3577889999999999999
Q ss_pred CCCCchhccCCCCCCeEeCCCCccc-cccccc------ccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC
Q 046992 276 SGHLPRGLNSLIQLEYLDLSANSFS-QSIPEL------CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS 348 (404)
Q Consensus 276 ~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 348 (404)
.+..+..+..+++|++|++++|.++ +.+|.. .+.|++++|++++..|.+|..+++|+.|++++|++++.+|..
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 8888889999999999999999997 456642 238999999999999999999999999999999999877654
Q ss_pred -cccCCCChhhhccCcCCCCCCC
Q 046992 349 -AVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 349 -~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
..+++++.+++.+||+.|.++.
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCcEEEecCCcccCCCcc
Confidence 6789999999999999998875
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=324.26 Aligned_cols=369 Identities=21% Similarity=0.201 Sum_probs=232.8
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCC-CcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKI-PPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFL 75 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 75 (404)
+++..|.+|+++++|++|++++|...+.+ |..++++++|++|+++.+ .|..|.++++|++|++++|.+++..+.
T Consensus 36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 36 IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence 44556777778888888888877554454 667778888888877643 466777888888888888887765554
Q ss_pred c--ccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECcCCcCCCCCcc--------------CCCCcccccCCcccc
Q 046992 76 S--WVTLSNFSRVYIYDNLLSGTIS-PFIGNLTSLVDLQLNSNQLIGHIPN--------------LRQNQFRGFLPSSIG 138 (404)
Q Consensus 76 ~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~--------------l~~n~~~~~~~~~~~ 138 (404)
. |..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+. ++.|.+.+..|..+.
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence 4 7778888888888887765433 4677888888888888877654332 455666655555555
Q ss_pred CCCC------CCEEeCcccccccccCccccC---------------------------------------CcccEEEccc
Q 046992 139 NLTN------LRKLFLRHNNLSGSLPLSIGN---------------------------------------LTLSFLVLDT 173 (404)
Q Consensus 139 ~l~~------L~~L~l~~n~i~~~~~~~~~~---------------------------------------~~L~~L~l~~ 173 (404)
.+++ |+.|++++|.+++..+..+.. ++++.|++++
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 4444 667777766554333222110 3466666666
Q ss_pred CcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC-------------ccccccCCCccEEeCCCcccCccCC
Q 046992 174 NQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT-------------TAYFAFYATLTFLDLSHNNFYNELS 239 (404)
Q Consensus 174 n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~ 239 (404)
|.+.+..+ .+..+++|+.|++++|.+.+..+..+..+++|+ +..|..+++|+.|++++|.+.+..+
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 66665554 555666666666666666655555555555444 3345666777777777777776666
Q ss_pred ccccccCCccEEEEe------c-------------------Cc----------------------cccCCCCCCEEEcCC
Q 046992 240 SNWAKCAKLGSLNFS------I-------------------PM----------------------ELGKLNSPTKLTLRE 272 (404)
Q Consensus 240 ~~~~~l~~L~~L~l~------~-------------------p~----------------------~~~~l~~L~~L~L~~ 272 (404)
..+..+++|+.|++. + |. .+..+++|++|++++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 677777777777761 1 10 012455666666666
Q ss_pred CcCCCCCch-hccCCCCCCeEeCCCCccccccc-----c------cccceecCCCcCcccCchhhccCCCCCEEECCCCc
Q 046992 273 NQLSGHLPR-GLNSLIQLEYLDLSANSFSQSIP-----E------LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 273 n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~-----~------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
|++++..+. .+..+++|+.|++++|.++...+ . -.+.|++++|++++..|..|.++++|+.|+|++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 666532221 23344555555555555542211 1 11267777777777766677777777777777777
Q ss_pred CcccCCCC--------------------cccCCCChhhhccCcCCCCCCC
Q 046992 341 LEGSTPNS--------------------AVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 341 l~~~~p~~--------------------~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+++..+.. ..+.+++.+++.+||+.|+|..
T Consensus 516 l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 516 LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred CCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence 76543322 2356788899999999998863
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.3e-38 Score=316.66 Aligned_cols=324 Identities=20% Similarity=0.233 Sum_probs=265.8
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCC-----------------CCcccc--cCCccccccccc-----hhhhhcCCCC
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGK-----------------IPPEIG--LLTHLKVTCTTW-----LVYFFIGQLK 57 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~l~l~~-----~~~~~l~~l~ 57 (404)
++| ||++|+++++|++|++++|.+++. +|..++ ++++|++|+++. ..|..+.+++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 457 999999999999999999999975 999999 999999999865 3688899999
Q ss_pred CCcEEEcCCCC-CCC-cccccccCC------CCCCEEEccCCcccccCCc--cccCCCCCCEEECcCCcCCCCCcc----
Q 046992 58 SLFELDLSLNQ-LSG-SIFLSWVTL------SNFSRVYIYDNLLSGTISP--FIGNLTSLVDLQLNSNQLIGHIPN---- 123 (404)
Q Consensus 58 ~L~~L~Ls~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---- 123 (404)
+|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|+++|.+|.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 99999999998 987 789888876 99999999999999 8888 899999999999999999866653
Q ss_pred -------CCCCcccccCCccccCCCC-CCEEeCcccccccccCccccC-C--cccEEEcccCcCccCCC-ccC-------
Q 046992 124 -------LRQNQFRGFLPSSIGNLTN-LRKLFLRHNNLSGSLPLSIGN-L--TLSFLVLDTNQFTSYVP-NIC------- 184 (404)
Q Consensus 124 -------l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~~~~-~--~L~~L~l~~n~l~~~~~-~l~------- 184 (404)
+++|.++ .+|..+..+++ |++|++++|.++ .+|..+.. . +|++|++++|.+.+..+ .+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 6667777 66777777777 888888888777 66766655 2 67788888887776555 444
Q ss_pred CCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCcccccc-------CCccEEEE----
Q 046992 185 HSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKC-------AKLGSLNF---- 253 (404)
Q Consensus 185 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~l---- 253 (404)
.+++|+.|++++|.+. .+|..+ +..+++|+.|++++|.++...+..+... ++|+.|++
T Consensus 431 ~~~~L~~L~Ls~N~l~-~lp~~~----------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 431 KGINVSSINLSNNQIS-KFPKEL----------FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CCCCEEEEECCSSCCC-SCCTHH----------HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred cCCCCCEEECcCCccC-cCCHHH----------HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 5667778888887776 444433 4567899999999999984443344333 28999999
Q ss_pred --ecCcccc--CCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeC------CCCccccccccc------ccceecCCCcC
Q 046992 254 --SIPMELG--KLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDL------SANSFSQSIPEL------CNLLNTAYNNL 317 (404)
Q Consensus 254 --~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L------~~n~l~~~~~~~------~~~L~l~~n~l 317 (404)
.+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|.+.+.+|.. .+.|++++|.+
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 6788886 99999999999999996 8989999999999999 567778777752 23899999999
Q ss_pred cccCchhhccCCCCCEEECCCCcCccc
Q 046992 318 SSLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 318 ~~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
+.+|..+. ++|+.|++++|++...
T Consensus 579 -~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 579 -RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp -CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred -CccCHhHh--CcCCEEECcCCCCccc
Confidence 45777665 7999999999998753
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=303.27 Aligned_cols=357 Identities=18% Similarity=0.174 Sum_probs=247.8
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
.+|..+. ++|++|++++|.+++..|..+.++++|++|+++++ .|..|.++++|++|++++|.++ .+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 4666555 77888888888887666677788888888877653 4667778888888888888877 45544 6
Q ss_pred CCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCC----c-------cCCCCcc--cccCCcccc-------
Q 046992 80 LSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHI----P-------NLRQNQF--RGFLPSSIG------- 138 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~----~-------~l~~n~~--~~~~~~~~~------- 138 (404)
+++|++|++++|.+++ .+|..|+.+++|++|++++|++++.. + .+++|.+ .+..|..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceE
Confidence 7888888888888775 35677778888888888887775310 0 0222333 222222222
Q ss_pred -------------------CCCCCCEEeCcccc-------cccccCccccC----------------------------C
Q 046992 139 -------------------NLTNLRKLFLRHNN-------LSGSLPLSIGN----------------------------L 164 (404)
Q Consensus 139 -------------------~l~~L~~L~l~~n~-------i~~~~~~~~~~----------------------------~ 164 (404)
.+++|+.+++++|. +.+.++ .+.. +
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 23344444444443 111111 1111 2
Q ss_pred cccEEEcccCcCccCCC-cc-----CCCCCCCEEECCCCcccCCCc-hhhhcC---CCCC----------ccc-cccCCC
Q 046992 165 TLSFLVLDTNQFTSYVP-NI-----CHSGLLEKYTNGNNRFLGPIP-KSLRNC---ISLT----------TAY-FAFYAT 223 (404)
Q Consensus 165 ~L~~L~l~~n~l~~~~~-~l-----~~~~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~----------~~~-~~~~~~ 223 (404)
+|++|++++|.+.+..+ .+ ..++.|+.+++++|.+ .+| .++..+ .+++ ... +..+++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 55666666666553333 44 5556666666666655 333 222221 1122 111 267899
Q ss_pred ccEEeCCCcccCccCCccccccCCccEEEE---------ecCccccCCCCCCEEEcCCCcCCCCCch-hccCCCCCCeEe
Q 046992 224 LTFLDLSHNNFYNELSSNWAKCAKLGSLNF---------SIPMELGKLNSPTKLTLRENQLSGHLPR-GLNSLIQLEYLD 293 (404)
Q Consensus 224 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~ 293 (404)
|++|++++|.+++..|..+..+++|+.|++ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 999999999999989999999999999999 2335578999999999999999974665 478899999999
Q ss_pred CCCCcccccccc----cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC-CcccCCCChhhhccCcCCCCC
Q 046992 294 LSANSFSQSIPE----LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN-SAVFRDAPLAALQKNKRLCSN 368 (404)
Q Consensus 294 L~~n~l~~~~~~----~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~ 368 (404)
+++|.+++..|. -.+.|++++|+|+. +|..+..+++|++|++++|++++..+. ...+++++.+++.+||+.|+|
T Consensus 406 Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 406 MSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCSSCCCGGGGGSCCTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcCCCCCcchhhhhcccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 999999876664 34499999999995 777777999999999999999965544 567899999999999999987
Q ss_pred CC
Q 046992 369 VK 370 (404)
Q Consensus 369 ~~ 370 (404)
..
T Consensus 485 ~~ 486 (520)
T 2z7x_B 485 PR 486 (520)
T ss_dssp HH
T ss_pred Cc
Confidence 63
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-36 Score=302.69 Aligned_cols=359 Identities=19% Similarity=0.183 Sum_probs=235.1
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
++|+.+. ++|++|++++|.+++..|..++++++|++|+++++ .+..|..+++|++|++++|.+++..+..|..
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 5676554 78999999999988777888899999999988653 4567888999999999999998777777889
Q ss_pred CCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCcc-------------CCCCcccccCCccccCCCCCCE
Q 046992 80 LSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPN-------------LRQNQFRGFLPSSIGNLTNLRK 145 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------l~~n~~~~~~~~~~~~l~~L~~ 145 (404)
+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+|. +++|.+++..|..+..+++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999998875 3466788899999999998874433221 4455666666666777777777
Q ss_pred EeCcccccccccCccc-cC-CcccEEEcccCcCccCCC----ccCCCCCCCEEECCCCcccCCCchhh------------
Q 046992 146 LFLRHNNLSGSLPLSI-GN-LTLSFLVLDTNQFTSYVP----NICHSGLLEKYTNGNNRFLGPIPKSL------------ 207 (404)
Q Consensus 146 L~l~~n~i~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~------------ 207 (404)
|++++|.+. .+|..+ .. ++|++|++++|.+.+... ....+++|+.|++++|.+.+..+..+
T Consensus 177 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 177 LTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred EecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 777777665 334333 23 678888888888776421 11223334444443333221111000
Q ss_pred ----------------------hcC-----------------------------CCCC-------------ccccccCCC
Q 046992 208 ----------------------RNC-----------------------------ISLT-------------TAYFAFYAT 223 (404)
Q Consensus 208 ----------------------~~l-----------------------------~~L~-------------~~~~~~~~~ 223 (404)
..+ .+++ ...+..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 000 0010 111234666
Q ss_pred ccEEeCCCcccCccCC---ccccccCCccEEEE------ecC---ccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCe
Q 046992 224 LTFLDLSHNNFYNELS---SNWAKCAKLGSLNF------SIP---MELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEY 291 (404)
Q Consensus 224 L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l------~~p---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (404)
|++|++++|.+++..+ ..+..+++|+.|++ .++ ..+..+++|++|++++|+++ .+|..+..+++|++
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence 6666666666665442 23455666666666 111 23455666666666666665 45555555555555
Q ss_pred EeCCCCccc---------------------cccccc--ccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC-
Q 046992 292 LDLSANSFS---------------------QSIPEL--CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN- 347 (404)
Q Consensus 292 L~L~~n~l~---------------------~~~~~~--~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~- 347 (404)
|++++|.++ +.+..+ .+.|++++|+|+. +|. ...+++|+.|++++|++++.+|.
T Consensus 415 L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp EECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred EECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHH
Confidence 555555554 332222 2378888888885 454 46788999999999999987776
Q ss_pred CcccCCCChhhhccCcCCCCCC
Q 046992 348 SAVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 348 ~~~~~~l~~~~~~~n~~~c~~~ 369 (404)
...+++++.+++.+||+.|+|+
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 4678999999999999999876
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.8e-37 Score=313.45 Aligned_cols=344 Identities=20% Similarity=0.206 Sum_probs=265.2
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCC-----------------CCCcccc--cCCccccccccc-----hhhhhcCCCC
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFG-----------------KIPPEIG--LLTHLKVTCTTW-----LVYFFIGQLK 57 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~l~l~~-----~~~~~l~~l~ 57 (404)
++| ||+.|+++++|++|+|++|.+++ .+|..++ ++++|++|+++. ..|..+.+++
T Consensus 437 L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 437 ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred ccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 345 99999999999999999999997 3999988 999999999865 3688899999
Q ss_pred CCcEEEcCCCC-CCC-cccccccCCC-------CCCEEEccCCcccccCCc--cccCCCCCCEEECcCCcCCCCCcc---
Q 046992 58 SLFELDLSLNQ-LSG-SIFLSWVTLS-------NFSRVYIYDNLLSGTISP--FIGNLTSLVDLQLNSNQLIGHIPN--- 123 (404)
Q Consensus 58 ~L~~L~Ls~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~--- 123 (404)
+|++|++++|. +++ .+|..+..++ +|++|++++|.++ .+|. .|..+++|++|++++|+++ .+|.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~ 593 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGT 593 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcC
Confidence 99999999998 887 7887666655 9999999999999 8888 8999999999999999988 4432
Q ss_pred --------CCCCcccccCCccccCCCC-CCEEeCcccccccccCccccC---CcccEEEcccCcCccCCCccC------C
Q 046992 124 --------LRQNQFRGFLPSSIGNLTN-LRKLFLRHNNLSGSLPLSIGN---LTLSFLVLDTNQFTSYVPNIC------H 185 (404)
Q Consensus 124 --------l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~l~------~ 185 (404)
+++|.++ .+|..+..+++ |+.|++++|.++ .+|..+.. ++|+.|++++|.+.+..+.+. .
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 5566666 56666777776 777777777776 56655554 237777777777765444222 3
Q ss_pred CCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccc--------cCCccEEEE----
Q 046992 186 SGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAK--------CAKLGSLNF---- 253 (404)
Q Consensus 186 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l---- 253 (404)
+++|+.|++++|.+. .+|..+ +..+++|+.|++++|.++ .+|..+.. +++|+.|++
T Consensus 672 ~~~L~~L~Ls~N~L~-~lp~~~----------~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 672 GINASTVTLSYNEIQ-KFPTEL----------FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp CCCEEEEECCSSCCC-SCCHHH----------HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred CCCcCEEEccCCcCC-ccCHHH----------HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC
Confidence 346777777777766 444443 456789999999999998 44444333 338999999
Q ss_pred --ecCcccc--CCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC------Cccccccccc------ccceecCCCcC
Q 046992 254 --SIPMELG--KLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA------NSFSQSIPEL------CNLLNTAYNNL 317 (404)
Q Consensus 254 --~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~------n~l~~~~~~~------~~~L~l~~n~l 317 (404)
.+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|.. .+.|++++|.+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 6788887 89999999999999995 788899999999999976 7788777752 23899999999
Q ss_pred cccCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCC
Q 046992 318 SSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 318 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c 366 (404)
+.+|..+. ++|+.|+|++|++....+.. ..........+.+|+..+
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred -CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 55777765 69999999999997654333 222334455566666554
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.1e-36 Score=300.78 Aligned_cols=355 Identities=17% Similarity=0.119 Sum_probs=237.5
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
.+|..+. +++++|++++|.+++..+..+.++++|++|+++++ .+..|.++++|++|++++|.+++..|..|.+
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 5776665 88999999999999888889999999999999764 5678899999999999999999888999999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCC-CCcc------------CCCCcccccCCccccCCCCCC--
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIG-HIPN------------LRQNQFRGFLPSSIGNLTNLR-- 144 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~------------l~~n~~~~~~~~~~~~l~~L~-- 144 (404)
+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|. +++|.+++..+..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 9999999999999987777889999999999999999974 2222 444555444444444333332
Q ss_pred --EEeCcccccccccCccccCCcccEEEcccCcC----------------------------------------------
Q 046992 145 --KLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQF---------------------------------------------- 176 (404)
Q Consensus 145 --~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l---------------------------------------------- 176 (404)
+|++++|.+++..+..+...+|+.|++++|.+
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred cceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 34444444442222222113444444444432
Q ss_pred -----------------------------------ccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCc------
Q 046992 177 -----------------------------------TSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTT------ 215 (404)
Q Consensus 177 -----------------------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~------ 215 (404)
...+ .+..+++|+.|++++|.+ +.+|. + .+++|+.
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESC
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCC
Confidence 2111 344455666666666666 45552 2 4444441
Q ss_pred -----cccccCCCccEEeCCCcccCcc--CCccccccCCccEEEE------ecC-------------------------c
Q 046992 216 -----AYFAFYATLTFLDLSHNNFYNE--LSSNWAKCAKLGSLNF------SIP-------------------------M 257 (404)
Q Consensus 216 -----~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l------~~p-------------------------~ 257 (404)
..+..+++|+.|++++|.+++. .+..+..+++|+.|++ .+| .
T Consensus 339 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChh
Confidence 1233445666666666655543 2444444444444444 122 3
Q ss_pred cccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc-ccccc------ccceecCCCcCcccCchhhccCCC
Q 046992 258 ELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ-SIPEL------CNLLNTAYNNLSSLIPKCFEKMHG 330 (404)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~ 330 (404)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|.. .+.|++++|.+++..|..|.++++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 45566667777777777666666667777777777777777766 24432 227888888888877788888888
Q ss_pred CCEEECCCCcCcccCCCC-cccCCCChhhhccCcCC
Q 046992 331 LSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRL 365 (404)
Q Consensus 331 L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~ 365 (404)
|+.|++++|++++..|.. ..+++++.+++++|...
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 888888888888765543 56778888888888754
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-35 Score=296.40 Aligned_cols=342 Identities=19% Similarity=0.191 Sum_probs=242.7
Q ss_pred CChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccCC
Q 046992 6 ISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80 (404)
Q Consensus 6 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 80 (404)
+|..+. ++|++|++++|.+++..|..+.++++|++|+++.+ .+..|.++++|++|++++|.++ .+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 665554 67788888888777555567777777777777543 4566777777777777777776 45544 67
Q ss_pred CCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCC--CEEeCccccc--cc
Q 046992 81 SNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNL--RKLFLRHNNL--SG 155 (404)
Q Consensus 81 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~i--~~ 155 (404)
++|++|++++|.+++ ..|..|.++++|++|++++|++++ ..+..+++| ++|++++|.+ ++
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---------------~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---------------LDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---------------TTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---------------CchhhhhhceeeEEEeecccccccc
Confidence 777777777777764 234677777777777777777661 234444555 7888888777 44
Q ss_pred ccCccccC---------------------------CcccEEEcccCcCc-------------------------------
Q 046992 156 SLPLSIGN---------------------------LTLSFLVLDTNQFT------------------------------- 177 (404)
Q Consensus 156 ~~~~~~~~---------------------------~~L~~L~l~~n~l~------------------------------- 177 (404)
..|..+.. ++|+.+++++|...
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 44433322 23334444433200
Q ss_pred --cCCCccCCCCCCCEEECCCCcccCCCchhh-----hcCCCCC------------------------------------
Q 046992 178 --SYVPNICHSGLLEKYTNGNNRFLGPIPKSL-----RNCISLT------------------------------------ 214 (404)
Q Consensus 178 --~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~------------------------------------ 214 (404)
...+ .....+|++|++++|.+.+.+|..+ .+++.|.
T Consensus 266 ~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 0000 0011266677777777766666554 2222221
Q ss_pred ccc-cccCCCccEEeCCCcccCccCCccccccCCccEEEE------ec---CccccCCCCCCEEEcCCCcCCCCCc-hhc
Q 046992 215 TAY-FAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SI---PMELGKLNSPTKLTLRENQLSGHLP-RGL 283 (404)
Q Consensus 215 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~---p~~~~~l~~L~~L~L~~n~l~~~~~-~~l 283 (404)
... ...+++|++|++++|.+++..|..+..+++|+.|++ .+ |..+..+++|++|++++|.+++.+| ..+
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 111 167889999999999999999999999999999999 22 3457889999999999999997455 458
Q ss_pred cCCCCCCeEeCCCCcccccccc----cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC-CcccCCCChhh
Q 046992 284 NSLIQLEYLDLSANSFSQSIPE----LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN-SAVFRDAPLAA 358 (404)
Q Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~----~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~ 358 (404)
..+++|++|++++|.+++..|. -.+.|++++|+|+. +|..+.++++|+.|++++|++++.++. ...+++++.++
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 8999999999999999887665 34499999999996 666666999999999999999965554 57789999999
Q ss_pred hccCcCCCCCC
Q 046992 359 LQKNKRLCSNV 369 (404)
Q Consensus 359 ~~~n~~~c~~~ 369 (404)
+.+||+.|+|+
T Consensus 504 l~~N~~~c~c~ 514 (562)
T 3a79_B 504 LHDNPWDCTCP 514 (562)
T ss_dssp CCSCCBCCCHH
T ss_pred ecCCCcCCCcc
Confidence 99999999875
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-35 Score=298.54 Aligned_cols=345 Identities=20% Similarity=0.227 Sum_probs=263.3
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
++|..+. +++++|++++|.+++..+..++++++|++|+++++ .+..+.++++|++|++++|.++...+..|..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 5777665 79999999999999776678999999999999753 5777889999999999999999665667999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCc
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPL 159 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (404)
+++|++|++++|.+++..+..|..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+.
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS------------TKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC------------CCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc------------cCchhhcccccCCEEEccCCcccccCHH
Confidence 9999999999999987777889999999999999999884 3345556666666666666666644333
Q ss_pred ccc--C-CcccEEEcccCcCccCCC-ccCC---------------------------CCCCCEEECCCCcccCCCchhhh
Q 046992 160 SIG--N-LTLSFLVLDTNQFTSYVP-NICH---------------------------SGLLEKYTNGNNRFLGPIPKSLR 208 (404)
Q Consensus 160 ~~~--~-~~L~~L~l~~n~l~~~~~-~l~~---------------------------~~~L~~L~l~~n~~~~~~~~~~~ 208 (404)
.+. . ++|+.|++++|.+.+..+ .+.. .++|+.|++++|.+.+..|.++.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 332 2 566666666666655444 2221 14566666666666655555554
Q ss_pred cCCC--CC-------------ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE------------ecCc----
Q 046992 209 NCIS--LT-------------TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------------SIPM---- 257 (404)
Q Consensus 209 ~l~~--L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~p~---- 257 (404)
.+.. |+ +..|..+++|++|++++|.+.+..+..+..+++|+.|++ .+|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 4332 33 234677899999999999999999999999999999988 2333
Q ss_pred cccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccc-ccc---------cccceecCCCcCcccCchhhcc
Q 046992 258 ELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQS-IPE---------LCNLLNTAYNNLSSLIPKCFEK 327 (404)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~---------~~~~L~l~~n~l~~~~~~~~~~ 327 (404)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... ++. -.+.|++++|+++++.|.+|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 567889999999999999988888899999999999999975432 111 2347888888888888888888
Q ss_pred CCCCCEEECCCCcCcccCCC--CcccCCCChhhhccCc
Q 046992 328 MHGLSGIDMSYNELEGSTPN--SAVFRDAPLAALQKNK 363 (404)
Q Consensus 328 l~~L~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~ 363 (404)
+++|+.|++++|++++.+|. ...+++++.+++.+|.
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 88888888888888765553 2456777777777765
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.1e-35 Score=290.84 Aligned_cols=347 Identities=20% Similarity=0.180 Sum_probs=260.3
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
++|..+. +++++|++++|.+++..+..+.++++|++|+++.+ .+..|.++++|++|++++|.+++..+..|..
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 5676554 57999999999999777889999999999999764 4667899999999999999999777789999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCc
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPL 159 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (404)
+++|++|++++|.++...+..++.+++|++|++++|.+++. .+|..++++++|++|++++|++++..+.
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-----------~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-----------CCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCcccee-----------cChhhhcccCCCCEEeCcCCccceecHH
Confidence 99999999999999865555799999999999999998731 2355556666666666666665543333
Q ss_pred cccC-Ccc----cEEEcccCcCccCCC-----------------------------------------------------
Q 046992 160 SIGN-LTL----SFLVLDTNQFTSYVP----------------------------------------------------- 181 (404)
Q Consensus 160 ~~~~-~~L----~~L~l~~n~l~~~~~----------------------------------------------------- 181 (404)
.+.. .+| ..+++++|.+....+
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 3333 333 344444444332221
Q ss_pred -----------------------------ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc----------------
Q 046992 182 -----------------------------NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA---------------- 216 (404)
Q Consensus 182 -----------------------------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~---------------- 216 (404)
.+..+++|+.|++++|.+. .+|..+..+ +|+..
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~ 325 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLK 325 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCS
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCccccc
Confidence 2334566777777777665 455444433 33211
Q ss_pred -----c-----------cccCCCccEEeCCCcccCccC--CccccccCCccEEEE------ecCccccCCCCCCEEEcCC
Q 046992 217 -----Y-----------FAFYATLTFLDLSHNNFYNEL--SSNWAKCAKLGSLNF------SIPMELGKLNSPTKLTLRE 272 (404)
Q Consensus 217 -----~-----------~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l------~~p~~~~~l~~L~~L~L~~ 272 (404)
. ...+++|+.|++++|.+++.. +..+..+++|+.|++ .++..+..+++|++|++++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccC
Confidence 0 145678888888888877554 667788888888888 4455578889999999999
Q ss_pred CcCCCCCc-hhccCCCCCCeEeCCCCcccccccccc------cceecCCCcCc-ccCchhhccCCCCCEEECCCCcCccc
Q 046992 273 NQLSGHLP-RGLNSLIQLEYLDLSANSFSQSIPELC------NLLNTAYNNLS-SLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 273 n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~------~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
|.+.+..+ ..+..+++|++|++++|.+++..|... +.|++++|.++ +.+|..|..+++|+.|++++|++++.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 99886555 467889999999999999988766532 38999999998 57888999999999999999999987
Q ss_pred CCCC-cccCCCChhhhccCcCCC
Q 046992 345 TPNS-AVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 345 ~p~~-~~~~~l~~~~~~~n~~~c 366 (404)
.|.. ..+++++.+++.+|....
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ChhhhhcccCCCEEeCCCCcCCC
Confidence 6644 678999999999986543
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=286.40 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc------ccceecCCCcCcccCchhhccCCCCCEEECC
Q 046992 264 SPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL------CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMS 337 (404)
Q Consensus 264 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 337 (404)
+|++|++++|.+++..+..+..+++|++|+|++|.+++..+.. .+.|++++|.++++.|..|..+++|+.|+++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 4444444444444222233444444444444444444332221 1144444444444444444444555555555
Q ss_pred CCcCcccCCCC-cccCCCChhhhccCcCCCCC
Q 046992 338 YNELEGSTPNS-AVFRDAPLAALQKNKRLCSN 368 (404)
Q Consensus 338 ~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~ 368 (404)
+|++++..+.. ..+++++.+++.+||+.|+|
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 55444333222 23444444445555544443
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-34 Score=289.46 Aligned_cols=356 Identities=21% Similarity=0.183 Sum_probs=244.4
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
+++..|.+|+++++|++|+|++|.+++..|.+|.+|++|++|+++++ .+..|.++++|++|++++|.+++..+..
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence 34445568899999999999999988666777889999999988763 4567888999999999999988766677
Q ss_pred ccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCCcCCCCCcc----------------CCCCccccc-------
Q 046992 77 WVTLSNFSRVYIYDNLLSG-TISPFIGNLTSLVDLQLNSNQLIGHIPN----------------LRQNQFRGF------- 132 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------l~~n~~~~~------- 132 (404)
|+.+++|++|++++|.+++ ..|..+..+++|++|++++|++++..+. ++.|.+...
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc
Confidence 8899999999999998864 4577788899999999999887643321 111111000
Q ss_pred --------------------------------------------------------------------------C-----
Q 046992 133 --------------------------------------------------------------------------L----- 133 (404)
Q Consensus 133 --------------------------------------------------------------------------~----- 133 (404)
.
T Consensus 224 ~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 224 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence 0
Q ss_pred -----------------CccccCCCCCCEEeCcccccccccCc-------------------cccC-CcccEEEcccCcC
Q 046992 134 -----------------PSSIGNLTNLRKLFLRHNNLSGSLPL-------------------SIGN-LTLSFLVLDTNQF 176 (404)
Q Consensus 134 -----------------~~~~~~l~~L~~L~l~~n~i~~~~~~-------------------~~~~-~~L~~L~l~~n~l 176 (404)
...+.....++.|++.+|.+....+. .... ++|+.++++.|.+
T Consensus 304 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCC
T ss_pred hhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccc
Confidence 00112233455666665554421111 1112 6788899988887
Q ss_pred ccCC--C-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccC-CccccccCCccEEE
Q 046992 177 TSYV--P-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNEL-SSNWAKCAKLGSLN 252 (404)
Q Consensus 177 ~~~~--~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 252 (404)
.... + ....+.+|+.+++..+.... .+..+ ..+++|+.+++.++...... ...+..+.+++.++
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~-----------~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNF-----------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCC-----------TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccccccchhhhhhhhhhhcccccccc-ccccc-----------cccccccchhhhhcccccccccccccccccccccc
Confidence 6432 2 45567788888888877653 22222 34455566666555443332 23345555555555
Q ss_pred E-------ecCccccCCCCCCEEEcCCCcCC-CCCchhccCCCCCCeEeCCCCcccccccccc------cceecCCCcCc
Q 046992 253 F-------SIPMELGKLNSPTKLTLRENQLS-GHLPRGLNSLIQLEYLDLSANSFSQSIPELC------NLLNTAYNNLS 318 (404)
Q Consensus 253 l-------~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------~~L~l~~n~l~ 318 (404)
+ ..+..+..+++++.|++++|.+. +..|..+..+++|++|+|++|++++.+|... +.|++++|+|+
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 5 23445566777788888777643 3456677777788888888888777666422 27778888888
Q ss_pred ccCchhhccCCCCCEEECCCCcCcccCCCC-ccc-CCCChhhhccCcCCCCCC
Q 046992 319 SLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVF-RDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 319 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~ 369 (404)
++.+..|.++++|+.|+|++|++++..|.. ..+ ++++.+++.+|||.|+|.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 888889999999999999999999887765 344 689999999999999986
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-34 Score=279.76 Aligned_cols=336 Identities=19% Similarity=0.154 Sum_probs=265.6
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCC-CcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKI-PPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFL 75 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 75 (404)
+++..|.+|+++++|++|++++|.+.+.+ +..+.++++|++|+++++ .+..|.++++|++|++++|.+++..+.
T Consensus 42 i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence 56667889999999999999999987555 567999999999999764 477899999999999999999876555
Q ss_pred c--ccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCC--CCCCEEeCcc
Q 046992 76 S--WVTLSNFSRVYIYDNLLSGTISPF-IGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL--TNLRKLFLRH 150 (404)
Q Consensus 76 ~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l--~~L~~L~l~~ 150 (404)
. |..+++|++|++++|.+++..|.. +..+++|++|++++|++++ ..+..+..+ .+|+.|++++
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS------------ICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC------------CCTTTSGGGTTCEEEEEECTT
T ss_pred cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc------------cChhhhhcccccccccccccc
Confidence 4 899999999999999999776766 8999999999999999984 344555544 6788888888
Q ss_pred cccccccCccc--------cC-CcccEEEcccCcCccCCC-cc---CCCCCCCEEECCCCcccCCCchhhhcCCCCCccc
Q 046992 151 NNLSGSLPLSI--------GN-LTLSFLVLDTNQFTSYVP-NI---CHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAY 217 (404)
Q Consensus 151 n~i~~~~~~~~--------~~-~~L~~L~l~~n~l~~~~~-~l---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~ 217 (404)
|.+.+..+..+ .. ++|++|++++|.+.+..+ .+ ....+|+.|++++|...+... ....+..+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~ 268 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFKDPDNFT 268 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TCCSSCCCCTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-chhhhccCcccc
Confidence 88874433322 12 678888888888876544 22 234778888888876553321 112222222222
Q ss_pred ccc--CCCccEEeCCCcccCccCCccccccCCccEEEE-------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCC
Q 046992 218 FAF--YATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQ 288 (404)
Q Consensus 218 ~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 288 (404)
+.. .++|+.|++++|.+++..+..+..+++|+.|++ ..|..+..+++|++|++++|.+++..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 333 367888888888888888888888888888888 33567888999999999999998777889999999
Q ss_pred CCeEeCCCCccccccccc------ccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcc
Q 046992 289 LEYLDLSANSFSQSIPEL------CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAV 350 (404)
Q Consensus 289 L~~L~L~~n~l~~~~~~~------~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 350 (404)
|++|++++|.+++..|.. .+.|++++|+++++.+..|..+++|+.|++++|++++..|....
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 999999999999876652 23899999999998888899999999999999999998886533
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=280.37 Aligned_cols=329 Identities=20% Similarity=0.177 Sum_probs=272.7
Q ss_pred CcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccC
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYD 90 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 90 (404)
-+.++.+++.++ .+|..+. +++++|+++.+ .+..|.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888888887 7887654 57888887653 456788899999999999999877788899999999999999
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEE
Q 046992 91 NLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFL 169 (404)
Q Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L 169 (404)
|.++...+..|..+++|++|++++|++. +..+..|..+++|++|++++|.+++..+..+.. ++|+.|
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIV------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CcCCccCcccccCCCCCCEEECCCCccc------------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 9998666667888999999999999887 345677888999999999999998777777877 899999
Q ss_pred EcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCc
Q 046992 170 VLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKL 248 (404)
Q Consensus 170 ~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 248 (404)
++++|.+....+ .+..+++|+.|++++|.+.+..+.. |..+++|+.|++++|...+.++.......+|
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-----------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-----------SCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh-----------cccCcccceeeCCCCccccccCcccccCccc
Confidence 999999988766 6788899999999999887543333 5677899999999998888888777777799
Q ss_pred cEEEE------ecC-ccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc------ccceecCCC
Q 046992 249 GSLNF------SIP-MELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL------CNLLNTAYN 315 (404)
Q Consensus 249 ~~L~l------~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~------~~~L~l~~n 315 (404)
+.|++ .+| ..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|.. .+.|++++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 99999 445 35778999999999999999777888999999999999999999876652 238999999
Q ss_pred cCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCC
Q 046992 316 NLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 316 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
.++++.+..|..+++|+.|++++|++.+..+....+.......+.++...|..+.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 9999888899999999999999999987655444445555567778888897764
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=300.90 Aligned_cols=359 Identities=21% Similarity=0.174 Sum_probs=229.0
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch------hhhhcCCCCCCcEEEcCCCCCCCccccccc
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------VYFFIGQLKSLFELDLSLNQLSGSIFLSWV 78 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (404)
+||. -.+++++|+|++|.+++..|..+.++++|++|+++++ .+..|.++++|++|+|++|.+++..|..|.
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 5675 4589999999999999888999999999999999765 377899999999999999999988899999
Q ss_pred CCCCCCEEEccCCcccccCCcc--ccCCCCCCEEECcCCcCCCCCcc-------------CCCCcccccCCccccCC--C
Q 046992 79 TLSNFSRVYIYDNLLSGTISPF--IGNLTSLVDLQLNSNQLIGHIPN-------------LRQNQFRGFLPSSIGNL--T 141 (404)
Q Consensus 79 ~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~-------------l~~n~~~~~~~~~~~~l--~ 141 (404)
.+++|++|++++|.+++..+.. |..+++|++|++++|.+++..+. +++|.+++..+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999999998756554 89999999999999999843221 33344443334444333 4
Q ss_pred CCCEEeCcccccccccCccccC-C------cccEEEcccCcCccCCC-cc------------------------------
Q 046992 142 NLRKLFLRHNNLSGSLPLSIGN-L------TLSFLVLDTNQFTSYVP-NI------------------------------ 183 (404)
Q Consensus 142 ~L~~L~l~~n~i~~~~~~~~~~-~------~L~~L~l~~n~l~~~~~-~l------------------------------ 183 (404)
+|+.|++++|.+.+..|..+.. . .|+.|++++|.+....+ .+
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 4444444444444333333222 1 25555555554432111 00
Q ss_pred ------CC--CCCCCEEECCCCcccCCCchhhhcCCCCC-------------ccccccCCCccEEeCCCcccCccCCccc
Q 046992 184 ------CH--SGLLEKYTNGNNRFLGPIPKSLRNCISLT-------------TAYFAFYATLTFLDLSHNNFYNELSSNW 242 (404)
Q Consensus 184 ------~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 242 (404)
.. .++|+.|++++|.+.+..+..+..+++|+ +..|..+++|+.|++++|.+++..+..+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 00 14556666666655544444444444444 2234445555555555555555555555
Q ss_pred cccCCccEEEE------ec-CccccCCCCCCEEEcCCCcCCCCC------------------c-----------------
Q 046992 243 AKCAKLGSLNF------SI-PMELGKLNSPTKLTLRENQLSGHL------------------P----------------- 280 (404)
Q Consensus 243 ~~l~~L~~L~l------~~-p~~~~~l~~L~~L~L~~n~l~~~~------------------~----------------- 280 (404)
..+++|+.|++ .+ +..+..+++|++|++++|.+++.. |
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccc
Confidence 55555555555 11 223444555555555555544210 0
Q ss_pred -----hhccCCCCCCeEeCCCCcccccccc-------cccceecCCCcCc-----ccCchhhccCCCCCEEECCCCcCcc
Q 046992 281 -----RGLNSLIQLEYLDLSANSFSQSIPE-------LCNLLNTAYNNLS-----SLIPKCFEKMHGLSGIDMSYNELEG 343 (404)
Q Consensus 281 -----~~l~~l~~L~~L~L~~n~l~~~~~~-------~~~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~ 343 (404)
..+..+++|++|++++|.+++..+. -.+.|++++|.++ +..+..|.++++|+.|+|++|++++
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc
Confidence 0112345555555555555432221 1226667777765 3344568889999999999999998
Q ss_pred cCCCC-cccCCCChhhhccCcCCC
Q 046992 344 STPNS-AVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 344 ~~p~~-~~~~~l~~~~~~~n~~~c 366 (404)
.+|.. ..+++++.+++++|....
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cChhHccchhhhheeECCCCCCCc
Confidence 77764 678999999999997543
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.2e-34 Score=263.61 Aligned_cols=257 Identities=28% Similarity=0.400 Sum_probs=216.6
Q ss_pred CCCcEEEcCCCCCCC--cccccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccC
Q 046992 57 KSLFELDLSLNQLSG--SIFLSWVTLSNFSRVYIYD-NLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFL 133 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~ 133 (404)
.++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|+++ +.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS------------GAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE------------EEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC------------CcC
Confidence 579999999999998 7888999999999999995 8888888999999999999999999887 467
Q ss_pred CccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCC-CCCEEECCCCcccCCCchhhhcC
Q 046992 134 PSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSG-LLEKYTNGNNRFLGPIPKSLRNC 210 (404)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l 210 (404)
|..+..+++|++|++++|.+++.+|..+.. ++|++|++++|.+.+..+ .+..++ .|+.|++++|.+.+.+|..+..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~- 196 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN- 196 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-
Confidence 888999999999999999998888888887 889999999999885555 777776 8888888888888777776643
Q ss_pred CCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCC
Q 046992 211 ISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLE 290 (404)
Q Consensus 211 ~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 290 (404)
++ |+.|++++|.+++.. |..+..+++|++|++++|.+++.++. +..+++|+
T Consensus 197 ----------l~-L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~ 247 (313)
T 1ogq_A 197 ----------LN-LAFVDLSRNMLEGDA-----------------SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247 (313)
T ss_dssp ----------CC-CSEEECCSSEEEECC-----------------GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCC
T ss_pred ----------Cc-ccEEECcCCcccCcC-----------------CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCC
Confidence 33 888888888887543 44556677888888888888755554 77788888
Q ss_pred eEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCC
Q 046992 291 YLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 291 ~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+|++++|.+++. +|..|..+++|+.|++++|++++.+|....+++++.+++.+||++||.+.
T Consensus 248 ~L~Ls~N~l~~~------------------~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 248 GLDLRNNRIYGT------------------LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EEECCSSCCEEC------------------CCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred EEECcCCcccCc------------------CChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 888888877653 77889999999999999999999999998999999999999999999765
Q ss_pred CCCCC
Q 046992 371 GLDLA 375 (404)
Q Consensus 371 ~~~~~ 375 (404)
..|
T Consensus 310 --~~C 312 (313)
T 1ogq_A 310 --PAC 312 (313)
T ss_dssp --SCC
T ss_pred --CCC
Confidence 346
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-33 Score=280.69 Aligned_cols=337 Identities=21% Similarity=0.172 Sum_probs=236.8
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCC-cccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSG-SIFL 75 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~-~~~~ 75 (404)
+++..|.+|+++++|++|++++|.+++..|..++++++|++|+++.+ .+..|.++++|++|++++|.+++ ..|.
T Consensus 38 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 38 ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 45667889999999999999999999888889999999999999753 55669999999999999999986 3567
Q ss_pred cccCCCCCCEEEccCCcccccC-CccccCCCCCCEEECcCCcCCCCCcc------------CCCCcccccCCcc-ccCCC
Q 046992 76 SWVTLSNFSRVYIYDNLLSGTI-SPFIGNLTSLVDLQLNSNQLIGHIPN------------LRQNQFRGFLPSS-IGNLT 141 (404)
Q Consensus 76 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------------l~~n~~~~~~~~~-~~~l~ 141 (404)
.+..+++|++|++++|.+.+.+ +..|..+++|++|++++|++++..|. ++.|.+.. +|.. +..++
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~ 196 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILS 196 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTT
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcc
Confidence 8999999999999999843344 46899999999999999999875543 33444432 2333 34689
Q ss_pred CCCEEeCccccccccc--CccccC--C-----------------------------------------------------
Q 046992 142 NLRKLFLRHNNLSGSL--PLSIGN--L----------------------------------------------------- 164 (404)
Q Consensus 142 ~L~~L~l~~n~i~~~~--~~~~~~--~----------------------------------------------------- 164 (404)
+|++|++++|++++.. +..+.. +
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 9999999999887521 111110 2
Q ss_pred ----------------------------------cccEEEcccCcCccCCCcc-CCCCCCCEEECCCCcccCCCchh---
Q 046992 165 ----------------------------------TLSFLVLDTNQFTSYVPNI-CHSGLLEKYTNGNNRFLGPIPKS--- 206 (404)
Q Consensus 165 ----------------------------------~L~~L~l~~n~l~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~--- 206 (404)
+++.|++++|.+..++..+ ..+++|++|++++|.+.+.+|..
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 2333334444433322222 24566666666666666544322
Q ss_pred hhcCCCCCc---------------cccccCCCccEEeCCCcccCccCCccccccCCccEEEE------ecCccccCCCCC
Q 046992 207 LRNCISLTT---------------AYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SIPMELGKLNSP 265 (404)
Q Consensus 207 ~~~l~~L~~---------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~p~~~~~l~~L 265 (404)
++.+++|+. ..+..+++|++|++++|.++ .+|..+..+++|+.|++ .+|..+ .++|
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L 433 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTL 433 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTC
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCc
Confidence 333333330 12455566666666666665 34555555666666655 122221 2466
Q ss_pred CEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----ccceecCCCcCcccCchhhccCCCCCEEECCCCc
Q 046992 266 TKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 266 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
++|++++|++++. ...+++|++|++++|+++. +|.. .+.|++++|++++..|..|..+++|+.|++++|+
T Consensus 434 ~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 434 EVLDVSNNNLDSF----SLFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SEEECCSSCCSCC----CCCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred eEEECCCCChhhh----cccCChhcEEECCCCccCc-CCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 6666666666632 2478999999999999984 5542 3389999999999999999999999999999999
Q ss_pred CcccCCC
Q 046992 341 LEGSTPN 347 (404)
Q Consensus 341 l~~~~p~ 347 (404)
+.+..|.
T Consensus 509 ~~~~~~~ 515 (549)
T 2z81_A 509 WDCSCPR 515 (549)
T ss_dssp BCCCHHH
T ss_pred ccCCCcc
Confidence 9887664
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-33 Score=265.85 Aligned_cols=302 Identities=16% Similarity=0.148 Sum_probs=216.9
Q ss_pred CCCcCcEeeCCCCcCCCCCCc-ccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCE
Q 046992 12 NLSKLEYLYLPFNQLFGKIPP-EIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSR 85 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (404)
.++++++|+++++.+. .+|. .+..+++|++|+++.+ .+..|..+++|++|++++|.+++..|..|..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688999999999987 4554 4677777777777543 3446777777888888877777666667777777888
Q ss_pred EEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-C
Q 046992 86 VYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-L 164 (404)
Q Consensus 86 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~ 164 (404)
|++++|.++...+..|..+++|++|++++|+++ +..+..+..+++|++|++++|++++. .+.. +
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE------------RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccC------------ccChhhccCCCCCCEEECCCCcCCcc---cccccc
Confidence 888777777444444577777888887777776 23345577777788888887777632 2333 6
Q ss_pred cccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccc
Q 046992 165 TLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAK 244 (404)
Q Consensus 165 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 244 (404)
+|+.|++++|.+... ...+.|+.|++++|.+... |. ...++|+.|++++|.+++
T Consensus 187 ~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~-~~-------------~~~~~L~~L~l~~n~l~~-------- 240 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RG-------------PVNVELTILKLQHNNLTD-------- 240 (390)
T ss_dssp TCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEE-EC-------------CCCSSCCEEECCSSCCCC--------
T ss_pred ccceeeccccccccc----CCCCcceEEECCCCeeeec-cc-------------cccccccEEECCCCCCcc--------
Confidence 777777777776643 3345677778877776522 21 223577888888887764
Q ss_pred cCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----ccceecCCCcCcc
Q 046992 245 CAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLNTAYNNLSS 319 (404)
Q Consensus 245 l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~l~~n~l~~ 319 (404)
...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..... .+.|++++|.+++
T Consensus 241 -----------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 241 -----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp -----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred -----------cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee
Confidence 234567788888888888888777788888888888888888887643322 2378888888886
Q ss_pred cCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCC
Q 046992 320 LIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 320 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 369 (404)
+|..+..+++|+.|++++|+++.. + ...+++++.+++.+||+.|.+.
T Consensus 310 -~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 310 -VERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp -CGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHH
T ss_pred -cCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchhH
Confidence 566688888999999999998754 3 4567889999999999888654
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=274.98 Aligned_cols=325 Identities=18% Similarity=0.169 Sum_probs=247.3
Q ss_pred CccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCC-ccccc
Q 046992 2 LFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSG-SIFLS 76 (404)
Q Consensus 2 ~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~ 76 (404)
+++..|.+|+++++|++|++++|++++..|..++++++|++|+++++ .|.. .+++|++|++++|.+++ ..|..
T Consensus 33 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 33 ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhh
Confidence 45666789999999999999999999777999999999999999875 2333 79999999999999986 46889
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCC--CEEECcCCcC--CCCCcc-------------CCCCcccc--------
Q 046992 77 WVTLSNFSRVYIYDNLLSGTISPFIGNLTSL--VDLQLNSNQL--IGHIPN-------------LRQNQFRG-------- 131 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~-------------l~~n~~~~-------- 131 (404)
|..+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|. +++|.+.+
T Consensus 111 ~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 187 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187 (520)
T ss_dssp GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT
T ss_pred hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhh
Confidence 9999999999999999875 456777788 9999999888 433322 11121111
Q ss_pred ------------------------cCCccccC---------------------------CCCCCEEeCcccccccccCcc
Q 046992 132 ------------------------FLPSSIGN---------------------------LTNLRKLFLRHNNLSGSLPLS 160 (404)
Q Consensus 132 ------------------------~~~~~~~~---------------------------l~~L~~L~l~~n~i~~~~~~~ 160 (404)
.++ .+.. .++|++|++++|++++.+|..
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred cccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence 111 1222 236777777777777667766
Q ss_pred c-----cC-CcccEEEcccCcC--------------------------ccCCCccCCCCCCCEEECCCCcccCCCchhhh
Q 046992 161 I-----GN-LTLSFLVLDTNQF--------------------------TSYVPNICHSGLLEKYTNGNNRFLGPIPKSLR 208 (404)
Q Consensus 161 ~-----~~-~~L~~L~l~~n~l--------------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 208 (404)
+ .. +.|+.++++.|.+ .... ....+++|++|++++|.+.+..|..+
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~- 344 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENC- 344 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTC-
T ss_pred hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhh-
Confidence 6 33 4455555555444 3211 12577889999999999887666554
Q ss_pred cCCCCCccccccCCCccEEeCCCcccCc--cCCccccccCCccEEEE------e-cCcc-ccCCCCCCEEEcCCCcCCCC
Q 046992 209 NCISLTTAYFAFYATLTFLDLSHNNFYN--ELSSNWAKCAKLGSLNF------S-IPME-LGKLNSPTKLTLRENQLSGH 278 (404)
Q Consensus 209 ~l~~L~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l------~-~p~~-~~~l~~L~~L~L~~n~l~~~ 278 (404)
..+++|++|++++|.+++ .+|..+..+++|+.|++ . +|.. +..+++|++|++++|++++.
T Consensus 345 ----------~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 345 ----------GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp ----------CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ----------ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 567889999999999986 55677889999999999 2 5553 67789999999999999877
Q ss_pred CchhccCCCCCCeEeCCCCcccccccccc-----cceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCC
Q 046992 279 LPRGLNSLIQLEYLDLSANSFSQSIPELC-----NLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTP 346 (404)
Q Consensus 279 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 346 (404)
.+..+. ++|++|++++|+++..++.+. +.|++++|+++.+.+..|..+++|+.|++++|++++..+
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 776654 799999999999985433332 389999999997544559999999999999999987654
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-32 Score=260.80 Aligned_cols=308 Identities=19% Similarity=0.154 Sum_probs=245.2
Q ss_pred CCChh-hcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCccccccc
Q 046992 5 IISPQ-ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWV 78 (404)
Q Consensus 5 ~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (404)
.+|+. |.++++|++|++++|.+++..+..++.+++|++|+++++ .+..+.++++|++|++++|.++...+..|.
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 46654 789999999999999999777789999999999999753 566789999999999999999955555578
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccC
Q 046992 79 TLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLP 158 (404)
Q Consensus 79 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 158 (404)
.+++|++|++++|.+++..+..+..+++|++|++++|+++ .+ .+..+++|+.|++++|.+++.
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------~~--~~~~l~~L~~L~l~~n~l~~~-- 201 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------HV--DLSLIPSLFHANVSYNLLSTL-- 201 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-------------BC--CGGGCTTCSEEECCSSCCSEE--
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-------------cc--ccccccccceeeccccccccc--
Confidence 9999999999999999777888999999999999999988 33 366789999999999998732
Q ss_pred ccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc
Q 046992 159 LSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE 237 (404)
Q Consensus 159 ~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~ 237 (404)
.. .+|++|++++|.+...+.. ..++|+.|++++|.+.+. . .+..+++|++|++++|.+++.
T Consensus 202 ---~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~-----------~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 202 ---AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--A-----------WLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp ---ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--G-----------GGGGCTTCSEEECCSSCCCEE
T ss_pred ---CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--H-----------HHcCCCCccEEECCCCcCCCc
Confidence 23 6899999999999876543 357899999999998743 1 257788999999999999865
Q ss_pred CCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----ccceec
Q 046992 238 LSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLNT 312 (404)
Q Consensus 238 ~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~l 312 (404)
. |..+..+++|++|++++|+++ .++..+..+++|++|++++|.+++..+.+ .+.|++
T Consensus 264 ~-----------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 264 M-----------------YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp E-----------------SGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred C-----------------hhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence 4 445556677777777777776 45555667777888888888777544432 237777
Q ss_pred CCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCC
Q 046992 313 AYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 369 (404)
++|.++... +..+++|+.|++++|++++.. ....+..+....+.+++..|.++
T Consensus 326 ~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 326 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCccceeC---chhhccCCEEEcCCCCccchh-HHHHHHHHHhhcccccCceeccc
Confidence 888777652 677899999999999998642 22456667777788888888764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-31 Score=261.27 Aligned_cols=320 Identities=24% Similarity=0.301 Sum_probs=210.4
Q ss_pred CCcCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEc
Q 046992 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYI 88 (404)
Q Consensus 13 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 88 (404)
+++++.|+++++.+. .+|. +..+++|++|+++.+ .+. +.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 345555555555554 3332 455555555555432 111 4555555555555555543322 555555555555
Q ss_pred cCCcccccCCccccCCCCCCEEECcCCcCCCCCcc------CCC----CcccccCCccccCCCCCCEEeCcccccccccC
Q 046992 89 YDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN------LRQ----NQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLP 158 (404)
Q Consensus 89 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------l~~----n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 158 (404)
++|.+++. +. +..+++|++|++++|.+.+. +. |.. |.+. .. ..+..+++|++|++++|.+++ ++
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~-~~-~~~~~l~~L~~L~l~~n~l~~-~~ 193 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVT-DL-KPLANLTTLERLDISSNKVSD-IS 193 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCC-CC-GGGTTCTTCCEEECCSSCCCC-CG
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCCccc-Cc-hhhccCCCCCEEECcCCcCCC-Ch
Confidence 55555422 21 45555555555555554421 10 000 0111 11 236677778888888877763 33
Q ss_pred ccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc
Q 046992 159 LSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE 237 (404)
Q Consensus 159 ~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~ 237 (404)
.+.. ++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.
T Consensus 194 -~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 194 -VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-------------GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred -hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-------------hhhhcCCCCCEEECCCCccccc
Confidence 2444 778888888877776544 55677788888887776532 1256778899999999988776
Q ss_pred CCccccccCCccEEEE------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc----cc
Q 046992 238 LSSNWAKCAKLGSLNF------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE----LC 307 (404)
Q Consensus 238 ~~~~~~~l~~L~~L~l------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~ 307 (404)
.+ +..+++|+.|++ .++. +..+++|++|++++|++.+..+ +..+++|++|++++|.+++..|- -.
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 333 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKL 333 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred hh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccC
Confidence 55 788889999888 3333 6788999999999999985443 78899999999999999876652 22
Q ss_pred cceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCC
Q 046992 308 NLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 308 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 366 (404)
+.|++++|.+++. ..+..+++|+.|++++|++++..| ...+++++.+++.+|++..
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 3899999999986 468899999999999999998777 6778999999999998766
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=249.69 Aligned_cols=298 Identities=23% Similarity=0.271 Sum_probs=224.2
Q ss_pred hhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch---hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCE
Q 046992 9 QISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL---VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSR 85 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (404)
.+..+++|++|+++++.+. .++ .+..+++|++|+++++ ....+..+++|++|++++|.++. ++ .+..+++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCE
Confidence 3457889999999999997 555 4777888888887653 11127778888888888888774 33 5778888888
Q ss_pred EEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-C
Q 046992 86 VYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-L 164 (404)
Q Consensus 86 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~ 164 (404)
|++++|.+.+ ++. +..+++|++|++++|... ..+..+..+++|++|++++|.+.+. +. +.. +
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~ 177 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNL-------------SDLSPLSNMTGLNYLTVTESKVKDV-TP-IANLT 177 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTC-------------CCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCT
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCc-------------ccccchhhCCCCcEEEecCCCcCCc-hh-hccCC
Confidence 8888888763 333 777888888888888554 2334477788888888888887733 32 445 7
Q ss_pred cccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccc
Q 046992 165 TLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAK 244 (404)
Q Consensus 165 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 244 (404)
+|+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~~L~~L~l~~n~l~~~------- 236 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-------------VANMTRLNSLKIGNNKITDL------- 236 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-------------GGGCTTCCEEECCSSCCCCC-------
T ss_pred CCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-------------hhcCCcCCEEEccCCccCCC-------
Confidence 78888888888776544 6677888888888887763322 35667888888888877642
Q ss_pred cCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----ccceecCCCcCcc
Q 046992 245 CAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLNTAYNNLSS 319 (404)
Q Consensus 245 l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~l~~n~l~~ 319 (404)
+. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++. +.+ .+.|++++|.+++
T Consensus 237 -----------~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 237 -----------SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp -----------GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCG
T ss_pred -----------cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCC
Confidence 32 5678889999999998874 3 4578889999999999988764 332 2389999999999
Q ss_pred cCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcC
Q 046992 320 LIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKR 364 (404)
Q Consensus 320 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 364 (404)
..+..|..+++|+.|++++|++++..| ...+++++.+++.+|+.
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 899999999999999999999997766 77899999999999874
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=274.32 Aligned_cols=302 Identities=15% Similarity=0.125 Sum_probs=198.3
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEE
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRV 86 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (404)
.+.+++.|++++|.+....+..+..+++|++|+++++ .+..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3577889999999887444455677778887777543 44567777788888888888776666677778888888
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-Cc
Q 046992 87 YIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LT 165 (404)
Q Consensus 87 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~ 165 (404)
++++|.+++..+..|..+++|++|++++|.++ +..|..|..+++|++|++++|.+++. + +.. ++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~ 193 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE------------RIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS 193 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTT
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC------------CCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhh
Confidence 88888777544455677778888888877776 23455677778888888888877733 2 333 67
Q ss_pred ccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCcccccc
Q 046992 166 LSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKC 245 (404)
Q Consensus 166 L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 245 (404)
|+.|++++|.+.+. .....|+.|++++|.+... +. ...++|+.|++++|.+++
T Consensus 194 L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~-~~-------------~~~~~L~~L~L~~n~l~~--------- 246 (597)
T 3oja_B 194 LFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RG-------------PVNVELTILKLQHNNLTD--------- 246 (597)
T ss_dssp CSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEE-EC-------------SCCSCCCEEECCSSCCCC---------
T ss_pred hhhhhcccCccccc----cCCchhheeeccCCccccc-cc-------------ccCCCCCEEECCCCCCCC---------
Confidence 77888877776653 3445677888888776522 21 113578888888888764
Q ss_pred CCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----ccceecCCCcCccc
Q 046992 246 AKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLNTAYNNLSSL 320 (404)
Q Consensus 246 ~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~l~~n~l~~~ 320 (404)
+..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|.+++..+.. ...|++++|.+++
T Consensus 247 ----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~- 315 (597)
T 3oja_B 247 ----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH- 315 (597)
T ss_dssp ----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-
T ss_pred ----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-
Confidence 234445566666666666666555666666666666666666665532221 1256666666664
Q ss_pred CchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCC
Q 046992 321 IPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSN 368 (404)
Q Consensus 321 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 368 (404)
+|..+..+++|+.|++++|++++.. ...+++++.+++.+||+.|.+
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred cCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 4555666666666666666665432 334566666666666666643
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-32 Score=271.47 Aligned_cols=310 Identities=19% Similarity=0.159 Sum_probs=246.6
Q ss_pred cCCCh-hhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccc
Q 046992 4 GIISP-QISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSW 77 (404)
Q Consensus 4 g~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 77 (404)
+.+|+ .|.++++|++|++++|.+++..|..++.+++|++|+++++ .+..|..+++|++|++++|.++...+..|
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh
Confidence 34555 4788999999999999999888889999999999999753 56678999999999999999996666668
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccccccccc
Q 046992 78 VTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSL 157 (404)
Q Consensus 78 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 157 (404)
..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+ .+..+++|+.|++++|.+++
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------~~--~~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------HV--DLSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-------------BC--CGGGCTTCSEEECCSSCCSE--
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-------------Cc--ChhhhhhhhhhhcccCcccc--
Confidence 99999999999999999888889999999999999999998 33 25678999999999998873
Q ss_pred CccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCc
Q 046992 158 PLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYN 236 (404)
Q Consensus 158 ~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~ 236 (404)
+.. .+|+.|++++|.+....... .++|+.|++++|.+.+. . .+..+++|+.|++++|.+++
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~-----------~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--A-----------WLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--G-----------GGGGCTTCSEEECCSSCCCE
T ss_pred ---ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--h-----------hhccCCCCCEEECCCCccCC
Confidence 223 68999999999998766533 36899999999998742 2 25778899999999999987
Q ss_pred cCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccccccc-----cccee
Q 046992 237 ELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL-----CNLLN 311 (404)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~L~ 311 (404)
.. |..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++.++.+ ...|+
T Consensus 269 ~~-----------------~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 269 IM-----------------YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp EE-----------------SGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred CC-----------------HHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence 54 445556677777777777776 45666666777777777777777543332 22777
Q ss_pred cCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCC
Q 046992 312 TAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 312 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+++|.+++.. +..+++|+.|++++|++.+.. ....+..+....+.+++..|+.+.
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTBCCCCCCCCTTC
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh-HHHHHHHHhhhccccccccCCcch
Confidence 7777777653 677889999999999998653 223466677777888888997643
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-31 Score=267.60 Aligned_cols=350 Identities=21% Similarity=0.172 Sum_probs=246.4
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
+||+.+. +.+++|+|++|++++..+.+|.++++|++|+++.+ .+.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5675553 47999999999999777788999999999999764 4667999999999999999999767778999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCc
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPL 159 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (404)
+++|++|++++|.+++..+..|+++++|++|++++|.+++. ..|..+..+++|++|++++|++++..+.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------CCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-----------CCchhhccchhhhhhcccCccccccccc
Confidence 99999999999999976677899999999999999998731 3567778888999999999888865555
Q ss_pred cccC-C----cccEEEcccCcCccCCCccCCCC-----------------------------------------------
Q 046992 160 SIGN-L----TLSFLVLDTNQFTSYVPNICHSG----------------------------------------------- 187 (404)
Q Consensus 160 ~~~~-~----~L~~L~l~~n~l~~~~~~l~~~~----------------------------------------------- 187 (404)
.+.. . ....++++.|.+..+.+......
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 5443 2 23345555555443322111111
Q ss_pred ---------------------------------------------------------CCCEEECCCCcccCCCchhhhcC
Q 046992 188 ---------------------------------------------------------LLEKYTNGNNRFLGPIPKSLRNC 210 (404)
Q Consensus 188 ---------------------------------------------------------~L~~L~l~~n~~~~~~~~~~~~l 210 (404)
.++.|++.+|.+....+..+..+
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence 12222222222221111111110
Q ss_pred CCCC--------ccccccCCCccEEeCCCcccCc--cCCcccccc-----------------------CCccEEEE----
Q 046992 211 ISLT--------TAYFAFYATLTFLDLSHNNFYN--ELSSNWAKC-----------------------AKLGSLNF---- 253 (404)
Q Consensus 211 ~~L~--------~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l-----------------------~~L~~L~l---- 253 (404)
+.+. ......+++|+.+++++|.+.. ..+..+..+ ++|+.+++
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 0000 1122345667777777776532 222233333 33443333
Q ss_pred ----ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc-ccccc------ccceecCCCcCcccCc
Q 046992 254 ----SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ-SIPEL------CNLLNTAYNNLSSLIP 322 (404)
Q Consensus 254 ----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~------~~~L~l~~n~l~~~~~ 322 (404)
..+..+..+++++.+++++|.+.+..+..+..++.|+.|++++|.+.. .+|.. .+.|++++|+|+++.|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 112245567788888888888887788888899999999999998654 34442 2389999999999999
Q ss_pred hhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCCC
Q 046992 323 KCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCS 367 (404)
Q Consensus 323 ~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~ 367 (404)
..|.++++|++|+|++|++++..|.. ..+++++.+++++|...--
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 99999999999999999999876654 6789999999999975543
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=5.3e-31 Score=262.39 Aligned_cols=331 Identities=19% Similarity=0.157 Sum_probs=197.1
Q ss_pred CCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEE
Q 046992 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVY 87 (404)
Q Consensus 13 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (404)
+...++++++++.++ .+|..+. ++|++|+++.+ .+..|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 445689999999998 6887654 67788777543 456778888888888888888877777788888888888
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-Ccc
Q 046992 88 IYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTL 166 (404)
Q Consensus 88 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L 166 (404)
+++|.++ .+|.. .+++|++|++++|++++. ..|..|+++++|++|++++|++++ ..+.. .++
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l-----------~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L 169 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL-----------PVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHL 169 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBC-----------CCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCcccc-----------CchHhhcccCcccEEecCCCcccc---Cchhhhhhc
Confidence 8888887 55555 678888888888887721 234678888888888888888774 23333 445
Q ss_pred --cEEEcccCcC--ccCCC-ccCC--------------------------CCCCCEEECCCCccc----CCCchhhhcCC
Q 046992 167 --SFLVLDTNQF--TSYVP-NICH--------------------------SGLLEKYTNGNNRFL----GPIPKSLRNCI 211 (404)
Q Consensus 167 --~~L~l~~n~l--~~~~~-~l~~--------------------------~~~L~~L~l~~n~~~----~~~~~~~~~l~ 211 (404)
++|++++|.+ .+..+ .+.. +++|+.+++++|... ......+..+.
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 8888888877 44433 2222 334444444444200 00011122222
Q ss_pred CCCcccc----------------ccCCCccEEeCCCcccCccCCccc---------------------------------
Q 046992 212 SLTTAYF----------------AFYATLTFLDLSHNNFYNELSSNW--------------------------------- 242 (404)
Q Consensus 212 ~L~~~~~----------------~~~~~L~~L~l~~n~l~~~~~~~~--------------------------------- 242 (404)
.++...+ ...++|++|++++|.+++.+|..+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 2221111 112378888888888877776655
Q ss_pred --------------------cccCCccEEEE-------ecCccccCCCCCCEEEcCCCcCCCC--CchhccCCCCCCeEe
Q 046992 243 --------------------AKCAKLGSLNF-------SIPMELGKLNSPTKLTLRENQLSGH--LPRGLNSLIQLEYLD 293 (404)
Q Consensus 243 --------------------~~l~~L~~L~l-------~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ 293 (404)
..+++|+.|++ .+|..+..+++|++|++++|++++. .|..+..+++|++|+
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 23344444444 1334444455555555555555431 123345555555555
Q ss_pred CCCCcccccccc-------cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCC
Q 046992 294 LSANSFSQSIPE-------LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRL 365 (404)
Q Consensus 294 L~~n~l~~~~~~-------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 365 (404)
+++|.+++.+|. -.+.|++++|.+++..|..+. ++|+.|++++|+++..++....+++++.+++.+|...
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 555555542221 111555555555554444332 4667777777776644444456677777777777644
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=5.7e-32 Score=249.31 Aligned_cols=250 Identities=27% Similarity=0.374 Sum_probs=215.0
Q ss_pred CcCcEeeCCCCcCCC--CCCcccccCCccccccccchhhhhcCCCCCCcEEEcCC-CCCCCcccccccCCCCCCEEEccC
Q 046992 14 SKLEYLYLPFNQLFG--KIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSL-NQLSGSIFLSWVTLSNFSRVYIYD 90 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~ 90 (404)
.++++|++++|.+.+ .+|.. +.++++|++|++++ |.+.+.+|..|..+++|++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-------------------l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~ 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-------------------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-------------------GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChh-------------------HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC
Confidence 578899999999887 77777 77888999999995 888888999999999999999999
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-C-cccE
Q 046992 91 NLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-L-TLSF 168 (404)
Q Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~-~L~~ 168 (404)
|.+++.+|..|..+++|++|++++|+++ +.+|..+..+++|++|++++|++++.+|..+.. + .|++
T Consensus 111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 111 TNVSGAIPDFLSQIKTLVTLDFSYNALS------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp ECCEEECCGGGGGCTTCCEEECCSSEEE------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred CeeCCcCCHHHhCCCCCCEEeCCCCccC------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 9998888999999999999999999887 357788899999999999999999888888888 5 8999
Q ss_pred EEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCC
Q 046992 169 LVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAK 247 (404)
Q Consensus 169 L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 247 (404)
|++++|.+.+..+ .+..+. |+.|++++|.+.+..|..+ ..+++|+.|++++|.+++..
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~L~~N~l~~~~--------- 237 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF-----------GSDKNTQKIHLAKNSLAFDL--------- 237 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC-----------CTTSCCSEEECCSSEECCBG---------
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH-----------hcCCCCCEEECCCCceeeec---------
Confidence 9999999986666 666666 9999999999987766654 66789999999999997543
Q ss_pred ccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhcc
Q 046992 248 LGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEK 327 (404)
Q Consensus 248 L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~ 327 (404)
..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++. +|.. ..
T Consensus 238 ---------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~------------------ip~~-~~ 289 (313)
T 1ogq_A 238 ---------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------------------IPQG-GN 289 (313)
T ss_dssp ---------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE------------------CCCS-TT
T ss_pred ---------CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc------------------CCCC-cc
Confidence 2356688999999999999989999999999999999999999875 4443 67
Q ss_pred CCCCCEEECCCCc-Ccc
Q 046992 328 MHGLSGIDMSYNE-LEG 343 (404)
Q Consensus 328 l~~L~~L~l~~N~-l~~ 343 (404)
+++|+.+++++|+ +.+
T Consensus 290 l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGSCGGGTCSSSEEES
T ss_pred ccccChHHhcCCCCccC
Confidence 8889999999998 554
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.3e-30 Score=250.77 Aligned_cols=299 Identities=23% Similarity=0.290 Sum_probs=217.6
Q ss_pred ccCCccccccccch---hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 046992 35 GLLTHLKVTCTTWL---VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQ 111 (404)
Q Consensus 35 ~~l~~L~~l~l~~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 111 (404)
..+++++.+.+... ....+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 34677787777543 22347789999999999999985544 8999999999999999985443 89999999999
Q ss_pred CcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCC
Q 046992 112 LNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLE 190 (404)
Q Consensus 112 L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~ 190 (404)
+++|.++ .++. +..+++|++|++++|.+.+ ++ .+.. ++|++|+++ +.+.... .+..+++|+
T Consensus 119 L~~n~l~-------------~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~ 180 (466)
T 1o6v_A 119 LFNNQIT-------------DIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK-PLANLTTLE 180 (466)
T ss_dssp CCSSCCC-------------CCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCC
T ss_pred CCCCCCC-------------CChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch-hhccCCCCC
Confidence 9999988 3333 7778888888888887763 33 2344 556666654 2232222 345555566
Q ss_pred EEECCCCcccCCCchhhhcCCCCC-----------ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE------
Q 046992 191 KYTNGNNRFLGPIPKSLRNCISLT-----------TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------ 253 (404)
Q Consensus 191 ~L~l~~n~~~~~~~~~~~~l~~L~-----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------ 253 (404)
.|++++|.+.+. + .+..+++|+ ...+..+++|+.|++++|.+++. ..+..+++|+.|++
T Consensus 181 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 181 RLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp EEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEECcCCcCCCC-h-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 666666555422 1 233333333 11245678889999999888764 46778888999888
Q ss_pred ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc----cccceecCCCcCcccCchhhccCC
Q 046992 254 SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE----LCNLLNTAYNNLSSLIPKCFEKMH 329 (404)
Q Consensus 254 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~L~l~~n~l~~~~~~~~~~l~ 329 (404)
.++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+- -.+.|++++|++++..| +..++
T Consensus 257 ~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 257 NLA-PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp CCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred cch-hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCc
Confidence 222 26788899999999999985433 78899999999999998875541 22389999999998765 78899
Q ss_pred CCCEEECCCCcCcccCCCCcccCCCChhhhccCcCC
Q 046992 330 GLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRL 365 (404)
Q Consensus 330 ~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 365 (404)
+|+.|++++|++++. +....+++++.+++.+|+..
T Consensus 332 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp TCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred cCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence 999999999999865 56677899999999988754
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=8e-31 Score=253.48 Aligned_cols=326 Identities=22% Similarity=0.258 Sum_probs=161.3
Q ss_pred CCcCcEeeCCCCcCCCCCCcccccCCccccccccc-----hhhhhcCCCCC-------------CcEEEcCCCCCCCccc
Q 046992 13 LSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTW-----LVYFFIGQLKS-------------LFELDLSLNQLSGSIF 74 (404)
Q Consensus 13 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~-----~~~~~l~~l~~-------------L~~L~Ls~n~i~~~~~ 74 (404)
.++|++|++++|.+ +.+|.+++++++|++|++++ ..|..++++.+ +++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 45666666666666 46666666666666666543 23444555544 3667777776663 33
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCC--CCc------cCCCCcccccCCccccCCCCCCEE
Q 046992 75 LSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIG--HIP------NLRQNQFRGFLPSSIGNLTNLRKL 146 (404)
Q Consensus 75 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~------~l~~n~~~~~~~~~~~~l~~L~~L 146 (404)
.. .++|++|++++|.+++ +|.. +++|++|++++|++++ ..| .+++|.+++ +| .++.+++|++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 21 3566777777776664 4432 2566666666666654 111 155566664 66 58888888888
Q ss_pred eCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCC--------cccc
Q 046992 147 FLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT--------TAYF 218 (404)
Q Consensus 147 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~--------~~~~ 218 (404)
++++|+++ .+|..+ .+|++|++++|.+.+.+ .+..+++|+.|++++|.+.+ +|....+++.|. ...+
T Consensus 159 ~l~~N~l~-~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~~ 233 (454)
T 1jl5_A 159 DVDNNSLK-KLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPEL 233 (454)
T ss_dssp ECCSSCCS-CCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCCC
T ss_pred ECCCCcCc-ccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCccccc
Confidence 88888887 355433 57888888888888743 67778888888888888764 333222111111 1125
Q ss_pred ccCCCccEEeCCCcccCccCCccccccCCccEEEE------ecCccccCCCCCCEEEcCCCcCCC--CCchhc-------
Q 046992 219 AFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SIPMELGKLNSPTKLTLRENQLSG--HLPRGL------- 283 (404)
Q Consensus 219 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l------- 283 (404)
..+++|++|++++|.+++. |.. +++|+.|++ .+|.. +++|++|++++|++++ ..|..+
T Consensus 234 ~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~ 306 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTL-PDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASS 306 (454)
T ss_dssp TTCTTCCEEECCSSCCSSC-CSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred CCCCCCCEEECCCCcCCcc-ccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcC
Confidence 5666777777777766542 221 245566655 22221 2456666666665553 111111
Q ss_pred ------cCC-CCCCeEeCCCCcccccccc---cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcc--cCCCC-cc
Q 046992 284 ------NSL-IQLEYLDLSANSFSQSIPE---LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEG--STPNS-AV 350 (404)
Q Consensus 284 ------~~l-~~L~~L~L~~n~l~~~~~~---~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~-~~ 350 (404)
..+ ++|++|++++|++++ +|. -.+.|++++|.+++ +|. .+++|+.|++++|++++ .+|.. ..
T Consensus 307 N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 307 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp SCCSEECCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred CcCCcccCCcCcCCEEECCCCcccc-ccccCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 112 356666666666554 222 22256666666665 333 35666677777776665 33332 22
Q ss_pred c-------------CCCChhhhccCcCCC
Q 046992 351 F-------------RDAPLAALQKNKRLC 366 (404)
Q Consensus 351 ~-------------~~l~~~~~~~n~~~c 366 (404)
+ ++++.+++.+|+...
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EECCC------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCc
Confidence 3 556666666666543
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.7e-30 Score=239.32 Aligned_cols=245 Identities=22% Similarity=0.274 Sum_probs=115.9
Q ss_pred cCCChhhcCC------CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccc
Q 046992 4 GIISPQISNL------SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSW 77 (404)
Q Consensus 4 g~~p~~~~~l------~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 77 (404)
+.+|..+... .++++++++++.++ .+|..+. +++++|++++|.+++..+..|
T Consensus 17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~---------------------~~l~~L~l~~n~i~~~~~~~~ 74 (332)
T 2ft3_A 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS---------------------PDTTLLDLQNNDISELRKDDF 74 (332)
T ss_dssp --------CCCCSSCEEETTEEECCSSCCS-SCCSCCC---------------------TTCCEEECCSSCCCEECTTTT
T ss_pred ccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC---------------------CCCeEEECCCCcCCccCHhHh
Confidence 3566655443 37999999999987 7787642 345555555555554444445
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccccccccc
Q 046992 78 VTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSL 157 (404)
Q Consensus 78 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 157 (404)
..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..+. ++|++|++++|+++...
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~l~~~~~--~~L~~L~l~~n~i~~~~ 139 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-------------EIPPNLP--SSLVELRIHDNRIRKVP 139 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-------------SCCSSCC--TTCCEEECCSSCCCCCC
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-------------ccCcccc--ccCCEEECCCCccCccC
Confidence 55555555555555555444455555555555555555554 2333322 44555555555554322
Q ss_pred CccccC-CcccEEEcccCcCcc--CCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcc
Q 046992 158 PLSIGN-LTLSFLVLDTNQFTS--YVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNN 233 (404)
Q Consensus 158 ~~~~~~-~~L~~L~l~~n~l~~--~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~ 233 (404)
+..+.. ++|+.|++++|.+.. ..+ .+..+ +|+.|++++|.+.+ +|..+ .++|++|++++|.
T Consensus 140 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~-------------~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL-------------PETLNELHLDHNK 204 (332)
T ss_dssp SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS-------------CSSCSCCBCCSSC
T ss_pred HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc-------------cCCCCEEECCCCc
Confidence 233333 455555555555432 222 23333 45555555555442 22211 1344555555555
Q ss_pred cCccCCccccccCCccEEEE------e-cCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 234 FYNELSSNWAKCAKLGSLNF------S-IPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l------~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
+++..+..+..+++|+.|++ . .+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 44332222222111111111 1 1223444555666666666665 555555566666666666666554
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=9.6e-30 Score=237.97 Aligned_cols=279 Identities=24% Similarity=0.289 Sum_probs=222.8
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch---hhhhcCCCCCCcEEEcCCCCCCCcccccccCCC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL---VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLS 81 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 81 (404)
.+| .+..+++|++|++++|.++ .++. +..+++|++|+++.+ ....+..+++|++|++++|.+++..+ +..++
T Consensus 58 ~~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~ 132 (347)
T 4fmz_A 58 SIQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLT 132 (347)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCT
T ss_pred cch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCC
Confidence 344 4889999999999999998 5555 999999999999764 33468899999999999999985433 88999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccc
Q 046992 82 NFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI 161 (404)
Q Consensus 82 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 161 (404)
+|++|++++|..... +..+..+++|++|++++|.+. ..+. +..+++|++|++++|.+.+ ++. +
T Consensus 133 ~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-------------~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~ 195 (347)
T 4fmz_A 133 KMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-------------DVTP-IANLTDLYSLSLNYNQIED-ISP-L 195 (347)
T ss_dssp TCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-------------CCGG-GGGCTTCSEEECTTSCCCC-CGG-G
T ss_pred ceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-------------Cchh-hccCCCCCEEEccCCcccc-ccc-c
Confidence 999999999976534 445899999999999999987 3333 8889999999999999984 444 5
Q ss_pred cC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCc
Q 046992 162 GN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSS 240 (404)
Q Consensus 162 ~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~ 240 (404)
.. ++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l~~~--- 258 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-------------LANLSQLTWLEIGTNQISDI--- 258 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-------------GTTCTTCCEEECCSSCCCCC---
T ss_pred cCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-------------hhcCCCCCEEECCCCccCCC---
Confidence 55 899999999999987655 7788999999999999874322 46778999999999998742
Q ss_pred cccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc------cccceecCC
Q 046992 241 NWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE------LCNLLNTAY 314 (404)
Q Consensus 241 ~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~L~l~~ 314 (404)
..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+. -.+.|++++
T Consensus 259 ----------------~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 259 ----------------NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ----------------GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred ----------------hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 234567788888888888874 3 3467788888888888888765554 123788888
Q ss_pred CcCcccCchhhccCCCCCEEECCCCcCc
Q 046992 315 NNLSSLIPKCFEKMHGLSGIDMSYNELE 342 (404)
Q Consensus 315 n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 342 (404)
|.+++..| +..+++|+.|++++|+++
T Consensus 321 n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 321 NHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CccccccC--hhhhhccceeehhhhccc
Confidence 88888666 889999999999999986
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=235.13 Aligned_cols=278 Identities=20% Similarity=0.190 Sum_probs=143.4
Q ss_pred cCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccc
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLS 94 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 94 (404)
++++++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---------------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---------------------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---------------------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCeEEEecCCCcc-ccCccC---------------------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC
Confidence 7888999988887 677653 245555666666655444445555666666666666655
Q ss_pred ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEccc
Q 046992 95 GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDT 173 (404)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~ 173 (404)
+..|..|..+++|++|++++|+++ .+|..+. ++|++|++++|.+++..+..+.. ++|++|++++
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~-------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLK-------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCS-------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred eeCHHHhcCCCCCCEEECCCCcCC-------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 444555556666666666666555 3333332 45555555555555333333444 5555555555
Q ss_pred CcCcc--CCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccE
Q 046992 174 NQFTS--YVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGS 250 (404)
Q Consensus 174 n~l~~--~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 250 (404)
|.+.. ..+ .+..+++|++|++++|.+. .+|..+ .++|++|++++|.+++..+..+..+++|+.
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~-------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-------------PPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC-------------CTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc-------------cccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 55542 222 4445555555555555544 222211 145555555555554433333322222222
Q ss_pred EEE------e-cCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCch
Q 046992 251 LNF------S-IPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPK 323 (404)
Q Consensus 251 L~l------~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~ 323 (404)
|++ . .+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. .+.
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~------------------~~~ 281 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI------------------GSN 281 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC------------------CTT
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc------------------Chh
Confidence 222 1 1223445556666666666665 5555566666666666666666543 333
Q ss_pred hhcc------CCCCCEEECCCCcCcc--cCC-CCcccCCCChhhhccC
Q 046992 324 CFEK------MHGLSGIDMSYNELEG--STP-NSAVFRDAPLAALQKN 362 (404)
Q Consensus 324 ~~~~------l~~L~~L~l~~N~l~~--~~p-~~~~~~~l~~~~~~~n 362 (404)
.|.. ...|+.+++++|++.. ..| ....++.++.+++++|
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3322 3556666666666643 111 1233455555555554
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.8e-29 Score=244.21 Aligned_cols=290 Identities=17% Similarity=0.129 Sum_probs=202.2
Q ss_pred ccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhh--hcCCCCCCcEEEcCCCCCCCcccccccCC
Q 046992 3 FGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYF--FIGQLKSLFELDLSLNQLSGSIFLSWVTL 80 (404)
Q Consensus 3 ~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 80 (404)
.+.-+..++++++|++|++++|.+++ +| .++.+++|++|+++.+... .+..+++|++|++++|.+++. + +..+
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCC
Confidence 44556678889999999999999984 56 6899999999999764221 278899999999999999864 3 8889
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCcc
Q 046992 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLS 160 (404)
Q Consensus 81 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (404)
++|++|++++|.+++ ++ +..+++|++|++++|++++ ++ ++.+++|++|++++|...+.+ .
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-------------l~--l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-------------ID--VSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-------------CC--CTTCTTCCEEECTTCSCCCCC--C
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-------------ec--cccCCcCCEEECCCCCccccc--c
Confidence 999999999999985 44 8899999999999999883 22 455566666666666433233 2
Q ss_pred ccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCC
Q 046992 161 IGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELS 239 (404)
Q Consensus 161 ~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~ 239 (404)
+.. ++|++|++++|.+++++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|++++ +|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~-------------l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-D-------------LNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-C-------------CTTCTTCSEEECCSSCCSC-CC
T ss_pred cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-c-------------cccCCCCCEEECcCCcccc-cC
Confidence 333 55666666666655532 45555566666666655432 1 2344555555555555544 22
Q ss_pred ccccccCCccEEEE------ecCccccCC----------CCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccc
Q 046992 240 SNWAKCAKLGSLNF------SIPMELGKL----------NSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSI 303 (404)
Q Consensus 240 ~~~~~l~~L~~L~l------~~p~~~~~l----------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 303 (404)
+..+++|+.|++ .+| +..+ .+|+.|++++|.+.+.+| +..+++|+.|++++|...+.+
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred --ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 444555555554 111 1222 356667777777665555 468899999999999887766
Q ss_pred cc--------------cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcc
Q 046992 304 PE--------------LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEG 343 (404)
Q Consensus 304 ~~--------------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 343 (404)
|. -.+.|++++|+++++ + +.++++|+.|++++|++++
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 63 122789999999995 3 8899999999999999986
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.7e-28 Score=237.47 Aligned_cols=266 Identities=20% Similarity=0.155 Sum_probs=206.8
Q ss_pred CChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhh--hcCCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046992 6 ISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYF--FIGQLKSLFELDLSLNQLSGSIFLSWVTLSNF 83 (404)
Q Consensus 6 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (404)
+| +|..+++|++|++++|.+++ +| ++.+++|++|+++.+... .+..+++|++|++++|.+++ ++ +..+++|
T Consensus 57 ~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 57 MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 46 79999999999999999985 44 899999999999764211 38899999999999999986 44 8899999
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC
Q 046992 84 SRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN 163 (404)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 163 (404)
++|++++|.+++ + .+..+++|++|++++|+..+ .+ .+..+++|++|++++|++++ +| +..
T Consensus 130 ~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~------------~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 130 TYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKIT------------KL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp CEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCC------------CC--CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred CEEECCCCccce-e--ccccCCcCCEEECCCCCccc------------cc--ccccCCcCCEEECCCCccce-ec--ccc
Confidence 999999999985 3 37899999999999996542 23 46778888899999888884 44 555
Q ss_pred -CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccc
Q 046992 164 -LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNW 242 (404)
Q Consensus 164 -~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 242 (404)
++|+.|++++|.+++. .+..+++|+.|++++|++.+ +| +..+++|+.|++++|.+++..+.
T Consensus 190 l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip-------------~~~l~~L~~L~l~~N~l~~~~~~-- 251 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID-------------VTPLTQLTYFDCSVNPLTELDVS-- 251 (457)
T ss_dssp CTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC-------------CTTCTTCSEEECCSSCCSCCCCT--
T ss_pred CCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC-------------ccccCCCCEEEeeCCcCCCcCHH--
Confidence 8888889888888875 46778888889998888875 33 25567888888888888776543
Q ss_pred cccCCccEEEE-----------------ecCccccCCCCCCEEEcCCCcCCCCCch--------hccCCCCCCeEeCCCC
Q 046992 243 AKCAKLGSLNF-----------------SIPMELGKLNSPTKLTLRENQLSGHLPR--------GLNSLIQLEYLDLSAN 297 (404)
Q Consensus 243 ~~l~~L~~L~l-----------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~L~L~~n 297 (404)
.+++|+.|++ .+| +..+++|+.|++++|...+.+|. .+..+++|++|++++|
T Consensus 252 -~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 252 -TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp -TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred -HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 3444444433 122 35678999999999987655543 2567789999999999
Q ss_pred cccccccc---cccceecCCCcCcc
Q 046992 298 SFSQSIPE---LCNLLNTAYNNLSS 319 (404)
Q Consensus 298 ~l~~~~~~---~~~~L~l~~n~l~~ 319 (404)
++++..-. -.+.|++++|++++
T Consensus 329 ~l~~l~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 329 ELTELDVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCSCCCCTTCTTCSEEECCSSCCCB
T ss_pred cccccccccCCcCcEEECCCCCCCC
Confidence 99985211 12389999999987
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=5.6e-29 Score=240.58 Aligned_cols=339 Identities=23% Similarity=0.253 Sum_probs=199.3
Q ss_pred cCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCcc-------------ccccccchhhhhcC-CCCCCcEEEcCCCCC
Q 046992 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHL-------------KVTCTTWLVYFFIG-QLKSLFELDLSLNQL 69 (404)
Q Consensus 4 g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------------~~l~l~~~~~~~l~-~l~~L~~L~Ls~n~i 69 (404)
|++|++|+++++|++|++++|.+.|.+|.+++++.+| ++++++......+. ..++|++|++++|.+
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL 103 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcC
Confidence 6788888888888888888888877788877777665 44444332111111 113444444444444
Q ss_pred CCcccccc----------------cCC-CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc---------
Q 046992 70 SGSIFLSW----------------VTL-SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN--------- 123 (404)
Q Consensus 70 ~~~~~~~~----------------~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 123 (404)
++ +|..+ ..+ ++|++|++++|.+++ +| .|+.+++|++|++++|++++ +|.
T Consensus 104 ~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~ 179 (454)
T 1jl5_A 104 TE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIA 179 (454)
T ss_dssp SS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEE
T ss_pred Cc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEE
Confidence 32 22111 112 689999999999984 66 58999999999999999885 332
Q ss_pred CCCCcccccCCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCC
Q 046992 124 LRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPI 203 (404)
Q Consensus 124 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~ 203 (404)
+++|.+++ +| .++.+++|++|++++|++++ +|... .+|++|++++|.+..++ .+..+++|++|++++|.+.+ +
T Consensus 180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l 252 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-L 252 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-c
Confidence 77888886 56 68899999999999999883 44432 58999999999988644 67889999999999998874 4
Q ss_pred chhhhcCCCCC--cccc----ccCCCccEEeCCCcccCccCCccccccCCccEEEEecC--ccccCC-CCCCEEEcCCCc
Q 046992 204 PKSLRNCISLT--TAYF----AFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIP--MELGKL-NSPTKLTLRENQ 274 (404)
Q Consensus 204 ~~~~~~l~~L~--~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p--~~~~~l-~~L~~L~L~~n~ 274 (404)
|..+..++.|. .-.+ ...++|+.|++++|.+++.. . -.++|+.|++..- ..+..+ ++|++|++++|+
T Consensus 253 ~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 253 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328 (454)
T ss_dssp CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC
T ss_pred cccccccCEEECCCCcccccCcccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc
Confidence 44332222111 0000 12356778888888776521 1 1146777766111 012233 589999999999
Q ss_pred CCCCCchhccCCCCCCeEeCCCCccccccccc---ccceecCCCcCcc--cCchhhccC-------------CCCCEEEC
Q 046992 275 LSGHLPRGLNSLIQLEYLDLSANSFSQSIPEL---CNLLNTAYNNLSS--LIPKCFEKM-------------HGLSGIDM 336 (404)
Q Consensus 275 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~L~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l 336 (404)
+++ +|.. +++|++|++++|.+++ +|.. .+.|++++|++++ .+|.++..+ ++|+.|++
T Consensus 329 l~~-lp~~---~~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 329 LIE-LPAL---PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred ccc-cccc---CCcCCEEECCCCcccc-ccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 984 5543 6899999999999985 4433 3389999999999 788888887 88999999
Q ss_pred CCCcCcc--cCCCCcccCCCChhhhccCcCCCC
Q 046992 337 SYNELEG--STPNSAVFRDAPLAALQKNKRLCS 367 (404)
Q Consensus 337 ~~N~l~~--~~p~~~~~~~l~~~~~~~n~~~c~ 367 (404)
++|++++ .+| ++++.+.+.+|...|.
T Consensus 404 s~N~l~~~~~iP-----~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 404 ETNPLREFPDIP-----ESVEDLRMNSERVVDP 431 (454)
T ss_dssp ---------------------------------
T ss_pred CCCcCCccccch-----hhHhheeCcCcccCCc
Confidence 9999997 444 4466777777765554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.8e-27 Score=220.99 Aligned_cols=274 Identities=17% Similarity=0.152 Sum_probs=174.6
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
.+|..+. +.+++|++++|.+++..+..++++++|++|+++++ .+..+..+++|++|++++|.++ .+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-
Confidence 4565553 68999999999999666667666666666666432 3455666666666666666665 3443332
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCc
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPL 159 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (404)
++|++|++++|.+++..+..|..+++|++|++++|.+... +..+..+..+++|++|++++|.++ .+|.
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~ 188 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------GIENGAFQGMKKLSYIRIADTNIT-TIPQ 188 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------GBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------CcChhhccCCCCcCEEECCCCccc-cCCc
Confidence 5666666666666654455566666666666666665410 123455566666666666666665 3443
Q ss_pred cccCCcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccC
Q 046992 160 SIGNLTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNEL 238 (404)
Q Consensus 160 ~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~ 238 (404)
.+. ++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.++
T Consensus 189 ~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~L~~N~l~--- 253 (330)
T 1xku_A 189 GLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-----------LANTPHLRELHLNNNKLV--- 253 (330)
T ss_dssp SCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-----------GGGSTTCCEEECCSSCCS---
T ss_pred ccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-----------ccCCCCCCEEECCCCcCc---
Confidence 332 556666666666665544 5556666666666666655433322 244556666666666665
Q ss_pred CccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccC------CCCCCeEeCCCCcccccccccccceec
Q 046992 239 SSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNS------LIQLEYLDLSANSFSQSIPELCNLLNT 312 (404)
Q Consensus 239 ~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~~~~L~l 312 (404)
.+|..+..+++|++|++++|++++..+..+.. .+.++.+++++|.+...
T Consensus 254 ---------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~---------- 308 (330)
T 1xku_A 254 ---------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW---------- 308 (330)
T ss_dssp ---------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG----------
T ss_pred ---------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc----------
Confidence 46777888999999999999999666666643 37788888888887531
Q ss_pred CCCcCcccCchhhccCCCCCEEECCCCc
Q 046992 313 AYNNLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
.+.|..|..+.+++.+++++|+
T Consensus 309 ------~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 ------EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ------GSCGGGGTTCCCGGGEEC----
T ss_pred ------ccCccccccccceeEEEecccC
Confidence 2366789999999999999985
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.7e-28 Score=231.63 Aligned_cols=249 Identities=20% Similarity=0.190 Sum_probs=154.7
Q ss_pred CcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcccc
Q 046992 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIG 138 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~ 138 (404)
.+.++.++..++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|+++ +..+..|.
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------~i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR------------TIEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC------------EECGGGGT
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC------------ccChhhcc
Confidence 456666666665 4554442 56677777777776555666677777777777777665 22345566
Q ss_pred CCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
++++|++|++++|+++...+..+.. ++|++|++++|.+..+.+ .+..+++|+.|++++|...+.++..
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------- 179 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------- 179 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc----------
Confidence 6777777777777776443444555 667777777777666555 5666777777777765443333321
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
.|..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLRE------------------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSS------------------CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhcccccCeecCCCCcCcc------------------cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 24556677777777777652 22 245566777777777777766667777777777777777
Q ss_pred CcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCCCCC
Q 046992 297 NSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 297 n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 369 (404)
|.+++. .+..|.++++|+.|+|++|++++..+.. ..+++++.+++.+|||.|+|.
T Consensus 241 n~l~~~------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 241 SQIQVI------------------ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCCEE------------------CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CceeEE------------------ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 766653 3445555666666666666666444332 345566666666666666553
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.5e-28 Score=224.29 Aligned_cols=274 Identities=21% Similarity=0.195 Sum_probs=196.7
Q ss_pred CcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccc
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSG 95 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 95 (404)
-+.++.+++.++ .+|.. + .++|++|++++|.++...+..|..+++|++|++++|.++.
T Consensus 9 ~~~l~c~~~~l~-~ip~~-------------------~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 66 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTG-------------------I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66 (306)
T ss_dssp TTEEECCSSCCS-SCCSC-------------------C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE
T ss_pred CCEEEcCCCCcc-cCCCC-------------------C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc
Confidence 357788888876 66755 2 3678999999999885555567889999999999998863
Q ss_pred c--CCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccC-ccccC-CcccEEEc
Q 046992 96 T--ISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLP-LSIGN-LTLSFLVL 171 (404)
Q Consensus 96 ~--~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~-~~L~~L~l 171 (404)
. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+.. ++|++|++
T Consensus 67 ~~~~~~~~~~~~~L~~L~Ls~n~i~-------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 67 KGCCSQSDFGTTSLKYLDLSFNGVI-------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp EEEEEHHHHSCSCCCEEECCSCSEE-------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC
T ss_pred ccCcccccccccccCEEECCCCccc-------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC
Confidence 2 2566677889999999999887 567778889999999999998884433 35555 78888888
Q ss_pred ccCcCccCCC-ccCCCCCCCEEECCCCcccC-CCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCcc
Q 046992 172 DTNQFTSYVP-NICHSGLLEKYTNGNNRFLG-PIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLG 249 (404)
Q Consensus 172 ~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 249 (404)
++|.+....+ .+..+++|++|++++|.+.+ ..|.. +..+++|+.|++++|.+++..
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~~l~~L~~L~Ls~n~l~~~~----------- 191 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----------FTELRNLTFLDLSQCQLEQLS----------- 191 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CTTCTTCCEEECTTSCCCEEC-----------
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCccccccchhH-----------HhhCcCCCEEECCCCCcCCcC-----------
Confidence 8888877666 56777888888888887764 23433 355677788888888776432
Q ss_pred EEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccC-
Q 046992 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKM- 328 (404)
Q Consensus 250 ~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l- 328 (404)
|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .|..+..+
T Consensus 192 ------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~~~~~~~~~ 247 (306)
T 2z66_A 192 ------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS------------------KKQELQHFP 247 (306)
T ss_dssp ------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC------------------SSSSCCCCC
T ss_pred ------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc------------------CHHHHHhhh
Confidence 44556677788888888888766666777788888888877777653 55566666
Q ss_pred CCCCEEECCCCcCcccCCCC---cccCCCChhhhccCcCCCCCCC
Q 046992 329 HGLSGIDMSYNELEGSTPNS---AVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 329 ~~L~~L~l~~N~l~~~~p~~---~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
++|+.|++++|++++..+.. ..+...+.+.+..+...|..|.
T Consensus 248 ~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 48888888888887654322 2233344444555666776554
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-27 Score=231.31 Aligned_cols=248 Identities=20% Similarity=0.175 Sum_probs=147.8
Q ss_pred CcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcccc
Q 046992 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIG 138 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~ 138 (404)
.+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|+++ +..+..|.
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR------------QIEVGAFN 120 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTT
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC------------CcChhhcc
Confidence 455666666665 4454432 56677777777666555666666777777777766665 23345566
Q ss_pred CCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
++++|++|++++|+++...+..+.. ++|++|++++|.+..+.+ .+..+++|+.|++++|...+.++..
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------- 190 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---------- 190 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh----------
Confidence 6667777777777666444444555 667777777776666555 5666677777777665433333321
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
.|..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD------------------MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS------------------CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred hccCCCCCCEEECCCCcccc------------------cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 24556677777777776653 12 244566777777777777766666777777777777777
Q ss_pred CcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCCCC
Q 046992 297 NSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCSN 368 (404)
Q Consensus 297 n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~ 368 (404)
|.+++. .+..|.++++|+.|+|++|++++..+.. ..+++++.+++.+|||.|+|
T Consensus 252 n~l~~~------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 252 SQVSLI------------------ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCCEE------------------CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CcCceE------------------CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 766653 3344555555555555555555433322 33455555555555555554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-27 Score=221.10 Aligned_cols=273 Identities=21% Similarity=0.204 Sum_probs=189.3
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
.+|..+. ++|++|++++|.+.+..|..+.++++|++|+++.+ .+..+.++++|++|++++|.++ .+|..+.
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~- 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP- 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-
Confidence 5666653 78999999999998777778777777777777542 3566777777777777777776 4444433
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCc
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPL 159 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (404)
++|++|++++|.++...+..|..+++|++|++++|.++.. +..+..+..+ +|++|++++|+++ .+|.
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~l-~L~~L~l~~n~l~-~l~~ 189 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------GFEPGAFDGL-KLNYLRISEAKLT-GIPK 189 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------GSCTTSSCSC-CCSCCBCCSSBCS-SCCS
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------CCCcccccCC-ccCEEECcCCCCC-ccCc
Confidence 6777777777777655555677777777777777776410 1234555555 7777777777776 3444
Q ss_pred cccCCcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccC
Q 046992 160 SIGNLTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNEL 238 (404)
Q Consensus 160 ~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~ 238 (404)
.+. ++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++
T Consensus 190 ~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~l~--- 254 (332)
T 2ft3_A 190 DLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-----------LSFLPTLRELHLDNNKLS--- 254 (332)
T ss_dssp SSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-----------GGGCTTCCEEECCSSCCC---
T ss_pred ccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH-----------hhCCCCCCEEECCCCcCe---
Confidence 333 567777777777776665 6667777777777777766444333 345567777777777765
Q ss_pred CccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccC------CCCCCeEeCCCCcccccccccccceec
Q 046992 239 SSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNS------LIQLEYLDLSANSFSQSIPELCNLLNT 312 (404)
Q Consensus 239 ~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~~~~L~l 312 (404)
.+|..+..+++|++|++++|++++..+..+.. .+.|+.|++++|.+..
T Consensus 255 ---------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~----------- 308 (332)
T 2ft3_A 255 ---------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY----------- 308 (332)
T ss_dssp ---------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG-----------
T ss_pred ---------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc-----------
Confidence 46777888999999999999999666666654 3678888888888752
Q ss_pred CCCcCcccCchhhccCCCCCEEECCCCc
Q 046992 313 AYNNLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
.++.|.+|..+++|+.+++++|+
T Consensus 309 -----~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 -----WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -----GGSCGGGGTTBCCSTTEEC----
T ss_pred -----cccCcccccccchhhhhhccccc
Confidence 12366789999999999999985
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=229.64 Aligned_cols=172 Identities=18% Similarity=0.106 Sum_probs=80.1
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccCCccccccccch-----hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEE
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL-----VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRV 86 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (404)
.++...+.+.+++.++ .+|..+. ++|++|+++.+ .+..+.++++|++|++++|.+++..+..|..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4556666777777776 6666532 13333333221 11124444555555555555444344444455555555
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc--cccCCCCCCEEeCccc-ccccccCccccC
Q 046992 87 YIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS--SIGNLTNLRKLFLRHN-NLSGSLPLSIGN 163 (404)
Q Consensus 87 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n-~i~~~~~~~~~~ 163 (404)
++++|.+++..+..|..+++|++|++++|+++ .+|. .+..+++|++|++++| .++...+..+..
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-------------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-------------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-------------ccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 55555544322223444555555555555444 2222 3444555555555554 233222333433
Q ss_pred -CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcc
Q 046992 164 -LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRF 199 (404)
Q Consensus 164 -~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~ 199 (404)
++|++|++++|.+.+..+ .+..+++|++|++++|.+
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 445555555554444433 444444455555544444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.3e-29 Score=231.88 Aligned_cols=266 Identities=20% Similarity=0.154 Sum_probs=132.2
Q ss_pred EEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCC
Q 046992 61 ELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL 140 (404)
Q Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l 140 (404)
..+.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|+++ +..+..|..+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l 99 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------------TIEEDSFSSL 99 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------------EECTTTTTTC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC------------ccCHhhcCCC
Confidence 3445555544 3333322 34555555555554333334555555555555555544 1223344455
Q ss_pred CCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCc-ccCCCchhhhcCCCCCcc
Q 046992 141 TNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNR-FLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 141 ~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~~ 216 (404)
++|++|++++|++++..+..+.. ++|++|++++|.+..++. .+..+++|++|++++|. +....+..
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---------- 169 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD---------- 169 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----------
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH----------
Confidence 55555555555554222222333 455555555555554433 34445555555555553 22111111
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
+..+++|++|++++|.+++.. |..+..+++|++|++++|.+.......+..+++|++|++++
T Consensus 170 -~~~l~~L~~L~l~~n~l~~~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 170 -FAGLTFLEELEIDASDLQSYE-----------------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp -TTTCCEEEEEEEEETTCCEEC-----------------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred -ccCCCCCCEEECCCCCcCccC-----------------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 234455555555555554322 22333344444444444444321112222344444444444
Q ss_pred Ccccccccc---------cccceecCCCcCcc----cCchhhccCCCCCEEECCCCcCcccCCCC-cccCCCChhhhccC
Q 046992 297 NSFSQSIPE---------LCNLLNTAYNNLSS----LIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKN 362 (404)
Q Consensus 297 n~l~~~~~~---------~~~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n 362 (404)
|.+++..+. ..+.++++++.+++ .+|..+..+++|+.|++++|+++...+.. ..+++++.+++.+|
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 444432211 11133444444433 25677888888888888888888544443 56788888888888
Q ss_pred cCCCCCC
Q 046992 363 KRLCSNV 369 (404)
Q Consensus 363 ~~~c~~~ 369 (404)
|+.|+++
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 8888764
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-27 Score=221.57 Aligned_cols=235 Identities=21% Similarity=0.209 Sum_probs=197.5
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCC
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDN 91 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 91 (404)
..+++++|++++|.++ .+|.. +.++++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~-------------------l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n 137 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQ-------------------AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSC-------------------GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC
T ss_pred cccceeEEEccCCCch-hcChh-------------------hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC
Confidence 3578999999999998 78877 667889999999999998 88888999999999999999
Q ss_pred cccccCCccccCCCCCCEEECcCCcCCCCCcc-CCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEE
Q 046992 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN-LRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFL 169 (404)
Q Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L 169 (404)
.++ .+|..+..+++|++|++++|++.+.+|. +... ..+..+..+++|++|++++|.++ .+|..+.. ++|++|
T Consensus 138 ~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~----~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLAST----DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp CCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE----C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred ccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc----cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 998 7888999999999999999887754432 1000 11223445999999999999998 88888888 899999
Q ss_pred EcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCcc
Q 046992 170 VLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLG 249 (404)
Q Consensus 170 ~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 249 (404)
++++|.+.++++.+..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.
T Consensus 212 ~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-----------~~l~~L~~L~L~~n~~~~~------------ 268 (328)
T 4fcg_A 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF-----------GGRAPLKRLILKDCSNLLT------------ 268 (328)
T ss_dssp EEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT-----------TCCCCCCEEECTTCTTCCB------------
T ss_pred EccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh-----------cCCCCCCEEECCCCCchhh------------
Confidence 99999999877788899999999999999888877655 5678899999999988764
Q ss_pred EEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 250 ~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 269 -----~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 269 -----LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp -----CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred -----cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 45666778899999999999999999999999999999998876653
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.3e-27 Score=217.93 Aligned_cols=251 Identities=22% Similarity=0.198 Sum_probs=207.3
Q ss_pred cEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccC
Q 046992 60 FELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGN 139 (404)
Q Consensus 60 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~ 139 (404)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..|..+++|++|++++|+++.. +..+..+..
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK----------GCCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE----------EEEEHHHHS
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc----------cCccccccc
Confidence 57899999887 566554 37899999999999855555689999999999999998711 122566778
Q ss_pred CCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 140 LTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 140 l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
+++|++|++++|.++ .+|..+.. ++|++|++++|.+.+... .+..+++|++|++++|.+.+..+..+
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------- 146 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------- 146 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT---------
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc---------
Confidence 999999999999998 56777777 999999999999988765 67889999999999999876655543
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 147 --~~l~~L~~L~l~~n~l~~~----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 147 --NGLSSLEVLKMAGNSFQEN----------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp --TTCTTCCEEECTTCEEGGG----------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred --ccCcCCCEEECCCCccccc----------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 5678899999999988642 1466677889999999999999977788899999999999999
Q ss_pred CcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC-ccc-CCCChhhhccCcCCCCCC
Q 046992 297 NSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS-AVF-RDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 297 n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~ 369 (404)
|.+++. .+..+..+++|+.|++++|++++..|.. ..+ ++++.+++.+|++.|+|.
T Consensus 209 N~l~~~------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 209 NNFFSL------------------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp SCCSBC------------------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CccCcc------------------ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 988763 4456888999999999999999877654 455 489999999999999875
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.3e-27 Score=218.78 Aligned_cols=226 Identities=22% Similarity=0.209 Sum_probs=176.2
Q ss_pred CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP 134 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~ 134 (404)
..+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-------------~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-------------ALP 143 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-------------CCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-------------cCc
Confidence 4588999999999998 77888889999999999999998 88999999999999999999998 678
Q ss_pred ccccCCCCCCEEeCcccccccccCcccc---------C-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCc
Q 046992 135 SSIGNLTNLRKLFLRHNNLSGSLPLSIG---------N-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIP 204 (404)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~---------~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 204 (404)
..+..+++|++|++++|.+.+.+|..+. . ++|++|++++|.++.++..+..+++|++|++++|.+.+ +|
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~ 222 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LG 222 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cc
Confidence 8899999999999999988878887654 2 66777777777777554466677777777777777663 33
Q ss_pred hhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhcc
Q 046992 205 KSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLN 284 (404)
Q Consensus 205 ~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 284 (404)
..+ ..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+.+|..+.
T Consensus 223 ~~l-----------~~l~~L~~L~Ls~n~~~~~-----------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 223 PAI-----------HHLPKLEELDLRGCTALRN-----------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp GGG-----------GGCTTCCEEECTTCTTCCB-----------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred hhh-----------ccCCCCCEEECcCCcchhh-----------------hHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 333 4556777777777766553 344555667777777777777767777777
Q ss_pred CCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCc
Q 046992 285 SLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE 342 (404)
Q Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 342 (404)
.+++|++|++++|.+.+. +|..+.++++|+.+++..|.+.
T Consensus 275 ~l~~L~~L~L~~n~~~~~------------------iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSR------------------LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GCTTCCEEECTTCTTCCC------------------CCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCCCCEEeCCCCCchhh------------------ccHHHhhccCceEEeCCHHHHH
Confidence 777777777777766553 7777888888888888877665
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-26 Score=211.14 Aligned_cols=223 Identities=22% Similarity=0.215 Sum_probs=190.0
Q ss_pred cEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccccc
Q 046992 17 EYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGT 96 (404)
Q Consensus 17 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 96 (404)
++++.+++.++ .+|.. ..++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 14 ~~~~c~~~~l~-~ip~~---------------------~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 71 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---------------------IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71 (285)
T ss_dssp CEEECCSSCCS-SCCTT---------------------CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred eEEEcCcCCcc-cCCcC---------------------CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee
Confidence 67888888886 66654 256899999999999977777899999999999999999877
Q ss_pred CCccccCCCCCCEEECcCCc-CCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccC
Q 046992 97 ISPFIGNLTSLVDLQLNSNQ-LIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTN 174 (404)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n 174 (404)
.+..|..+++|++|++++|. +. ...+..+..+++|++|++++|.+++..+..+.. ++|++|++++|
T Consensus 72 ~~~~~~~l~~L~~L~l~~n~~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 72 DAAAFTGLALLEQLDLSDNAQLR------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp CTTTTTTCTTCCEEECCSCTTCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CHhhcCCccCCCEEeCCCCCCcc------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 78899999999999999997 66 133677889999999999999999766777877 99999999999
Q ss_pred cCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEE
Q 046992 175 QFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF 253 (404)
Q Consensus 175 ~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 253 (404)
.+....+ .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+++.
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~---------------- 192 (285)
T 1ozn_A 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-----------FRGLHSLDRLLLHQNRVAHV---------------- 192 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT-----------TTTCTTCCEEECCSSCCCEE----------------
T ss_pred cccccCHhHhccCCCccEEECCCCcccccCHHH-----------hcCccccCEEECCCCccccc----------------
Confidence 9998777 5788999999999999887433333 46678999999999998753
Q ss_pred ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 254 SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 254 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
.|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 193 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 193 -HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred -CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 35566778899999999999997777789999999999999999975
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.3e-26 Score=221.69 Aligned_cols=228 Identities=20% Similarity=0.163 Sum_probs=186.2
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS 136 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~ 136 (404)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++. ..+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV------------IPSGA 142 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB------------CCTTT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc------------cChhh
Confidence 689999999999998778889999999999999999987778889999999999999999882 23455
Q ss_pred ccCCCCCCEEeCcccccccccCccccC-CcccEEEcccC-cCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCC
Q 046992 137 IGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTN-QFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISL 213 (404)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 213 (404)
|..+++|++|++++|+++...+..+.. ++|++|++++| .+..+.. .+..+++|+.|++++|.+.+ +|.
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-------- 213 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-------- 213 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC--------
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc--------
Confidence 788999999999999998555556777 89999999984 5555444 67889999999999998873 331
Q ss_pred CccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEe
Q 046992 214 TTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLD 293 (404)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (404)
+..+++|+.|++++|.+++.. |..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 214 ----~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 214 ----LTPLVGLEELEMSGNHFPEIR-----------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp ----CTTCTTCCEEECTTSCCSEEC-----------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ----ccccccccEEECcCCcCcccC-----------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 467789999999999988643 44566778889999999999877788888899999999
Q ss_pred CCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCccc
Q 046992 294 LSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 294 L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
|++|.+++. .+..|..+++|+.|++++|++.+.
T Consensus 273 L~~N~l~~~------------------~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 273 LAHNNLSSL------------------PHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CCSSCCSCC------------------CTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCcCCcc------------------ChHHhccccCCCEEEccCCCcCCC
Confidence 988888753 345577788888888888887644
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.3e-26 Score=220.11 Aligned_cols=227 Identities=20% Similarity=0.178 Sum_probs=181.8
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS 136 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~ 136 (404)
+++++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+++. ..+..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT------------IPNGA 131 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS------------CCTTT
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe------------eCHhH
Confidence 678999999999987777889999999999999999987777889999999999999998882 23346
Q ss_pred ccCCCCCCEEeCcccccccccCccccC-CcccEEEcccC-cCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCC
Q 046992 137 IGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTN-QFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISL 213 (404)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 213 (404)
|..+++|++|++++|.++...+..+.. ++|++|++++| .+..+.+ .+..+++|+.|++++|.+. .+|.
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-------- 202 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-------- 202 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--------
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--------
Confidence 888999999999999998555556777 89999999884 4554444 6788899999999999876 3332
Q ss_pred CccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEe
Q 046992 214 TTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLD 293 (404)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (404)
+..+++|+.|++++|.+++.. |..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 203 ----~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 203 ----LTPLIKLDELDLSGNHLSAIR-----------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp ----CTTCSSCCEEECTTSCCCEEC-----------------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred ----cCCCcccCEEECCCCccCccC-----------------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 467788999999999887543 44566778888888888888877778888888888888
Q ss_pred CCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcc
Q 046992 294 LSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEG 343 (404)
Q Consensus 294 L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 343 (404)
|++|.+++. .+..|..+++|+.|+|++|++..
T Consensus 262 L~~N~l~~~------------------~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 262 LAHNNLTLL------------------PHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTSCCCCC------------------CTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCCCcc------------------ChhHhccccCCCEEEcCCCCccC
Confidence 888888753 44556777888888888888754
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.7e-26 Score=209.97 Aligned_cols=251 Identities=19% Similarity=0.138 Sum_probs=200.1
Q ss_pred CcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcccc
Q 046992 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIG 138 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~ 138 (404)
-++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.++ +..+..+.
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~------------~~~~~~~~ 77 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA------------RIDAAAFT 77 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTT
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc------------eeCHhhcC
Confidence 367899999887 556544 579999999999998777778999999999999999988 24477889
Q ss_pred CCCCCCEEeCcccc-cccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCc
Q 046992 139 NLTNLRKLFLRHNN-LSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTT 215 (404)
Q Consensus 139 ~l~~L~~L~l~~n~-i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 215 (404)
.+++|++|++++|. ++...+..+.. ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+..
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------- 148 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT--------- 148 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH---------
Confidence 99999999999997 77555777777 899999999999988766 6788899999999999887443333
Q ss_pred cccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCC
Q 046992 216 AYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLS 295 (404)
Q Consensus 216 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 295 (404)
+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 149 --~~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 149 --FRDLGNLTHLFLHGNRISSVP-----------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp --TTTCTTCCEEECCSSCCCEEC-----------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred --hccCCCccEEECCCCcccccC-----------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 466788999999999887422 2346678889999999999987778888999999999999
Q ss_pred CCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCC
Q 046992 296 ANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 296 ~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+|.+++. .+..+..+++|+.|++++|++.+..+....+..++......+...|..|.
T Consensus 210 ~n~l~~~------------------~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 210 ANNLSAL------------------PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp SSCCSCC------------------CHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESG
T ss_pred CCcCCcC------------------CHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCch
Confidence 9888752 45678899999999999999987655543344455555667777776654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.8e-28 Score=225.14 Aligned_cols=240 Identities=20% Similarity=0.145 Sum_probs=186.8
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|+++ .
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-------------~ 94 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-------------E 94 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-------------E
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-------------c
Confidence 6678899999999999998777889999999999999999975443 889999999999999887 3
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
++ ..++|++|++++|++++..+..+ ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+..+
T Consensus 95 l~----~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---- 164 (317)
T 3o53_A 95 LL----VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---- 164 (317)
T ss_dssp EE----ECTTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG----
T ss_pred cc----CCCCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH----
Confidence 33 34899999999999985443332 679999999999988766 77778899999999998876555444
Q ss_pred CCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCe
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEY 291 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (404)
+..+++|++|++++|.+++. +. ...+++|++|++++|+++ .++..+..+++|++
T Consensus 165 ------~~~l~~L~~L~L~~N~l~~~------------------~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 165 ------AASSDTLEHLNLQYNFIYDV------------------KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218 (317)
T ss_dssp ------GGGTTTCCEEECTTSCCCEE------------------EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSE
T ss_pred ------hhccCcCCEEECCCCcCccc------------------cc-ccccccCCEEECCCCcCC-cchhhhcccCcccE
Confidence 23567889999999988742 22 224788899999999998 45556888899999
Q ss_pred EeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCc-ccCCCC-cccCCCChhhhccC
Q 046992 292 LDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE-GSTPNS-AVFRDAPLAALQKN 362 (404)
Q Consensus 292 L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~~-~~~~~l~~~~~~~n 362 (404)
|++++|.+++ +|..+..+++|+.|++++|+++ +.+|.. ..+++++.+++.++
T Consensus 219 L~L~~N~l~~-------------------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 219 ISLRNNKLVL-------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECTTSCCCE-------------------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EECcCCcccc-------------------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999998875 5666778888888888888887 333322 45666777777744
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.5e-27 Score=230.09 Aligned_cols=248 Identities=21% Similarity=0.157 Sum_probs=196.7
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
...+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.++ .
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------~ 94 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-------------E 94 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-------------E
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-------------C
Confidence 4455689999999999998888899999999999999999986554 889999999999999987 3
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
++ ..++|++|++++|.+++..+..+ ++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+..|..+.
T Consensus 95 l~----~~~~L~~L~L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--- 165 (487)
T 3oja_A 95 LL----VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--- 165 (487)
T ss_dssp EE----ECTTCCEEECCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG---
T ss_pred CC----CCCCcCEEECcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh---
Confidence 33 23899999999999985544322 779999999999988766 777888999999999988876666552
Q ss_pred CCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCe
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEY 291 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (404)
..+++|+.|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.
T Consensus 166 -------~~l~~L~~L~Ls~N~l~~~------------------~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~ 218 (487)
T 3oja_A 166 -------ASSDTLEHLNLQYNFIYDV------------------KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218 (487)
T ss_dssp -------GGTTTCCEEECTTSCCCEE------------------EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred -------hhCCcccEEecCCCccccc------------------cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccE
Confidence 3567889999999988743 21 2247889999999999984 5555888899999
Q ss_pred EeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCc-ccCCC-CcccCCCChhhhc-------cC
Q 046992 292 LDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELE-GSTPN-SAVFRDAPLAALQ-------KN 362 (404)
Q Consensus 292 L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~p~-~~~~~~l~~~~~~-------~n 362 (404)
|++++|.+++ +|..+..+++|+.|++++|++. +.+|. ...++.+..+.+. ++
T Consensus 219 L~Ls~N~l~~-------------------lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 279 (487)
T 3oja_A 219 ISLRNNKLVL-------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (487)
T ss_dssp EECTTSCCCE-------------------ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCcCcc-------------------cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCC
Confidence 9999988875 6667888999999999999998 33332 2446666777776 88
Q ss_pred cCCCCCCC
Q 046992 363 KRLCSNVK 370 (404)
Q Consensus 363 ~~~c~~~~ 370 (404)
++.|.++.
T Consensus 280 ~~~c~~~~ 287 (487)
T 3oja_A 280 EEECTVPT 287 (487)
T ss_dssp SCCCSSTT
T ss_pred cccccCCc
Confidence 88888764
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=4.3e-29 Score=242.59 Aligned_cols=320 Identities=17% Similarity=0.111 Sum_probs=218.4
Q ss_pred hcCCCcCcEeeCCCCcCCC----CCCcccccCCccccccccchh-----h-hhcCCCC----CCcEEEcCCCCCCC----
Q 046992 10 ISNLSKLEYLYLPFNQLFG----KIPPEIGLLTHLKVTCTTWLV-----Y-FFIGQLK----SLFELDLSLNQLSG---- 71 (404)
Q Consensus 10 ~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~l~l~~~~-----~-~~l~~l~----~L~~L~Ls~n~i~~---- 71 (404)
+..+++|++|++++|.+.+ .++..+..+++|++|+++++. + .....++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 5667788888888887753 245556677788887776531 1 1223344 68888888887763
Q ss_pred cccccccCCCCCCEEEccCCcccccCCccc-----cCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEE
Q 046992 72 SIFLSWVTLSNFSRVYIYDNLLSGTISPFI-----GNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKL 146 (404)
Q Consensus 72 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L 146 (404)
.++..+..+++|++|++++|.+++..+..+ ...++|++|++++|+++.... ..++..+..+++|++|
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--------~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--------EPLASVLRAKPDFKEL 175 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--------HHHHHHHHHCTTCCEE
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--------HHHHHHHhhCCCCCEE
Confidence 346677777888888888887754333322 224568888888877762110 0235556677889999
Q ss_pred eCcccccccccCccccC------CcccEEEcccCcCccCC----C-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCc
Q 046992 147 FLRHNNLSGSLPLSIGN------LTLSFLVLDTNQFTSYV----P-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTT 215 (404)
Q Consensus 147 ~l~~n~i~~~~~~~~~~------~~L~~L~l~~n~l~~~~----~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 215 (404)
++++|.+++..+..+.. ++|++|++++|.++... + .+..+++|++|++++|.+.......+. .
T Consensus 176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~------~ 249 (461)
T 1z7x_W 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC------P 249 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH------H
T ss_pred ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH------H
Confidence 99988887544433322 48889999988887632 2 556678889999988887643222221 1
Q ss_pred cccccCCCccEEeCCCcccCcc----CCccccccCCccEEEEe-----------cCccc-cCCCCCCEEEcCCCcCCCC-
Q 046992 216 AYFAFYATLTFLDLSHNNFYNE----LSSNWAKCAKLGSLNFS-----------IPMEL-GKLNSPTKLTLRENQLSGH- 278 (404)
Q Consensus 216 ~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~-----------~p~~~-~~l~~L~~L~L~~n~l~~~- 278 (404)
..+..+++|+.|++++|.+++. ++..+..+++|+.|++. +...+ ...++|++|++++|.+++.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 1123578899999999988764 56667778888888881 11111 1236899999999998754
Q ss_pred ---CchhccCCCCCCeEeCCCCcccccccc-----------cccceecCCCcCcc----cCchhhccCCCCCEEECCCCc
Q 046992 279 ---LPRGLNSLIQLEYLDLSANSFSQSIPE-----------LCNLLNTAYNNLSS----LIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 279 ---~~~~l~~l~~L~~L~L~~n~l~~~~~~-----------~~~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~ 340 (404)
++..+..+++|++|++++|.+++..+. -.+.|++++|.+++ .++..+..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 456667789999999999988754322 33489999999986 678888889999999999999
Q ss_pred Ccc
Q 046992 341 LEG 343 (404)
Q Consensus 341 l~~ 343 (404)
+++
T Consensus 410 i~~ 412 (461)
T 1z7x_W 410 LGD 412 (461)
T ss_dssp CCH
T ss_pred CCH
Confidence 875
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.3e-28 Score=222.75 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=42.0
Q ss_pred CCCCCCEEEcCCCcCCCCCc-hhccCCCCCCeEeCCCCccccccccc---ccceecCCCcCcccCchhhccCCCCCEEEC
Q 046992 261 KLNSPTKLTLRENQLSGHLP-RGLNSLIQLEYLDLSANSFSQSIPEL---CNLLNTAYNNLSSLIPKCFEKMHGLSGIDM 336 (404)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 336 (404)
.+++|++|++++|++++..| ..+..+++|++|++++|.++..+..+ .+.|++++|+|++. |. +..+++|+.|++
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 34455555555555554332 23334455555555555554211111 11344444444443 44 777788888888
Q ss_pred CCCcCcc
Q 046992 337 SYNELEG 343 (404)
Q Consensus 337 ~~N~l~~ 343 (404)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 8888764
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.1e-29 Score=246.77 Aligned_cols=338 Identities=19% Similarity=0.113 Sum_probs=241.9
Q ss_pred CCcCcEeeCCCCcCCCCCCcc-cccCCccccccccch---------hhhhcCCCCCCcEEEcCCCCCCCccccccc-CCC
Q 046992 13 LSKLEYLYLPFNQLFGKIPPE-IGLLTHLKVTCTTWL---------VYFFIGQLKSLFELDLSLNQLSGSIFLSWV-TLS 81 (404)
Q Consensus 13 l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~~---------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~ 81 (404)
.++|++|+++++.++...... +..+++|++++++.+ .+..+..+++|++|++++|.+++..+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999987443333 778999999998653 356678889999999999998755444433 355
Q ss_pred ----CCCEEEccCCcccc----cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc-ccCCCCCCEEeCcccc
Q 046992 82 ----NFSRVYIYDNLLSG----TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS-IGNLTNLRKLFLRHNN 152 (404)
Q Consensus 82 ----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~ 152 (404)
+|++|++++|.++. .++..+..+++|++|++++|.++...+. .+... ....++|++|++++|+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ--------LLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH--------HHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH--------HHHHHHhcCCCcceEEECCCCC
Confidence 79999999999874 4577889999999999999987621000 01111 2235689999999999
Q ss_pred ccccc----CccccC-CcccEEEcccCcCccCCC-ccC-----CCCCCCEEECCCCcccCCCchhhhcCCCCCccccccC
Q 046992 153 LSGSL----PLSIGN-LTLSFLVLDTNQFTSYVP-NIC-----HSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFY 221 (404)
Q Consensus 153 i~~~~----~~~~~~-~~L~~L~l~~n~l~~~~~-~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~ 221 (404)
+++.. +..+.. ++|++|++++|.+..... .+. ..++|++|++++|.+.......+. ..+..+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-------~~l~~~ 226 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-------GIVASK 226 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-------HHHHHC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-------HHHHhC
Confidence 98643 444445 889999999999876433 222 356899999999988754222221 124567
Q ss_pred CCccEEeCCCcccCccCC-----ccccccCCccEEEE-----------ecCccccCCCCCCEEEcCCCcCCCCCchhcc-
Q 046992 222 ATLTFLDLSHNNFYNELS-----SNWAKCAKLGSLNF-----------SIPMELGKLNSPTKLTLRENQLSGHLPRGLN- 284 (404)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l-----------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~- 284 (404)
++|+.|++++|.+++... ..+..+++|+.|++ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 899999999999876432 22335788999988 1455566788999999999988644443333
Q ss_pred ----CCCCCCeEeCCCCccccc----ccc------cccceecCCCcCcccCchhhcc-----CCCCCEEECCCCcCcc--
Q 046992 285 ----SLIQLEYLDLSANSFSQS----IPE------LCNLLNTAYNNLSSLIPKCFEK-----MHGLSGIDMSYNELEG-- 343 (404)
Q Consensus 285 ----~l~~L~~L~L~~n~l~~~----~~~------~~~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~-- 343 (404)
..++|++|++++|.+++. ++. -.+.|++++|.+++..+..+.. .++|+.|++++|++++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 236899999999998764 222 2338999999998866655543 6789999999999884
Q ss_pred --cCCC-CcccCCCChhhhccCcCC
Q 046992 344 --STPN-SAVFRDAPLAALQKNKRL 365 (404)
Q Consensus 344 --~~p~-~~~~~~l~~~~~~~n~~~ 365 (404)
.+|. ....++++.+++.+|+..
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHHHhCCCccEEECCCCCCC
Confidence 3333 245788999999998754
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.3e-27 Score=217.93 Aligned_cols=250 Identities=20% Similarity=0.213 Sum_probs=200.8
Q ss_pred hhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEc
Q 046992 9 QISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYI 88 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 88 (404)
.+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~-------------------~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAAD-------------------LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHH-------------------HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred HhccCCCCCEEECcCCccCcCCHHH-------------------hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4456678888888888887555555 8889999999999999985544 889999999999
Q ss_pred cCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-Cccc
Q 046992 89 YDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLS 167 (404)
Q Consensus 89 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~ 167 (404)
++|.+++ + ...++|++|++++|+++ .++. ..+++|++|++++|++++..+..+.. ++|+
T Consensus 88 s~n~l~~-l----~~~~~L~~L~l~~n~l~-------------~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 88 NNNYVQE-L----LVGPSIETLHAANNNIS-------------RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp CSSEEEE-E----EECTTCCEEECCSSCCS-------------EEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred cCCcccc-c----cCCCCcCEEECCCCccC-------------CcCc--cccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 9999873 2 23489999999999988 2322 34788999999999999766767777 8999
Q ss_pred EEEcccCcCccCCC-cc-CCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCcccccc
Q 046992 168 FLVLDTNQFTSYVP-NI-CHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKC 245 (404)
Q Consensus 168 ~L~l~~n~l~~~~~-~l-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 245 (404)
+|++++|.+.+..+ .+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.+++
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~------------~~~l~~L~~L~Ls~N~l~~--------- 205 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG------------QVVFAKLKTLDLSSNKLAF--------- 205 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC------------CCCCTTCCEEECCSSCCCE---------
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc------------ccccccCCEEECCCCcCCc---------
Confidence 99999999998765 44 4689999999999998743 21 2347899999999999973
Q ss_pred CCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhh
Q 046992 246 AKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCF 325 (404)
Q Consensus 246 ~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~ 325 (404)
+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+... ..+..+
T Consensus 206 ---------l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~-----------------~~~~~~ 258 (317)
T 3o53_A 206 ---------MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG-----------------TLRDFF 258 (317)
T ss_dssp ---------ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH-----------------HHHHHH
T ss_pred ---------chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc-----------------CHHHHH
Confidence 4556778899999999999998 6788899999999999999999721 266778
Q ss_pred ccCCCCCEEECCCCc-CcccCCCC
Q 046992 326 EKMHGLSGIDMSYNE-LEGSTPNS 348 (404)
Q Consensus 326 ~~l~~L~~L~l~~N~-l~~~~p~~ 348 (404)
..+++|+.+++++|+ +++..|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hccccceEEECCCchhccCCchhc
Confidence 888899999998554 55554433
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.6e-24 Score=213.34 Aligned_cols=260 Identities=22% Similarity=0.206 Sum_probs=175.0
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcC-CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCc
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIG-QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNL 92 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 92 (404)
.++++|++++|.++ .+|..+. ++|++|+++.+....+. .+++|++|++++|.++ .+|. .+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCc
Confidence 46899999999998 8888754 56666666543222111 4556667777776665 3443 45666777777666
Q ss_pred ccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccCCcccEEEcc
Q 046992 93 LSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLD 172 (404)
Q Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~ 172 (404)
++ .+|. .+++|+.|++++|+++ .+|.. +++|++|++++|.++ .+|..+ .+|+.|+++
T Consensus 113 l~-~l~~---~l~~L~~L~L~~N~l~-------------~lp~~---l~~L~~L~Ls~N~l~-~l~~~~--~~L~~L~L~ 169 (622)
T 3g06_A 113 LT-HLPA---LPSGLCKLWIFGNQLT-------------SLPVL---PPGLQELSVSDNQLA-SLPALP--SELCKLWAY 169 (622)
T ss_dssp CC-CCCC---CCTTCCEEECCSSCCS-------------CCCCC---CTTCCEEECCSSCCS-CCCCCC--TTCCEEECC
T ss_pred CC-CCCC---CCCCcCEEECCCCCCC-------------cCCCC---CCCCCEEECcCCcCC-CcCCcc--CCCCEEECC
Confidence 65 3333 4456666777666666 34432 366777777777666 333221 556677777
Q ss_pred cCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEE
Q 046992 173 TNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLN 252 (404)
Q Consensus 173 ~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 252 (404)
+|.++.++ ..+++|+.|++++|.+.+ +|. ..++|+.|++++|.++.
T Consensus 170 ~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~--------------~~~~L~~L~L~~N~l~~---------------- 215 (622)
T 3g06_A 170 NNQLTSLP---MLPSGLQELSVSDNQLAS-LPT--------------LPSELYKLWAYNNRLTS---------------- 215 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCSC-CCC--------------CCTTCCEEECCSSCCSS----------------
T ss_pred CCCCCCCc---ccCCCCcEEECCCCCCCC-CCC--------------ccchhhEEECcCCcccc----------------
Confidence 77766644 335667777777776652 221 12466677777776652
Q ss_pred EecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccc--cccceecCCCcCcccCchhhccCCC
Q 046992 253 FSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPE--LCNLLNTAYNNLSSLIPKCFEKMHG 330 (404)
Q Consensus 253 l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~L~l~~n~l~~~~~~~~~~l~~ 330 (404)
+|. .+++|++|++++|.+++ +| ..+++|+.|++++|.+++..+. -...|++++|.|+. +|..|.++++
T Consensus 216 --l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~-lp~~l~~l~~ 285 (622)
T 3g06_A 216 --LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSS 285 (622)
T ss_dssp --CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCS-CCGGGGGSCT
T ss_pred --cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCc-CCHHHhhccc
Confidence 333 24789999999999984 55 5678999999999999864332 23389999999995 6888999999
Q ss_pred CCEEECCCCcCcccCCC
Q 046992 331 LSGIDMSYNELEGSTPN 347 (404)
Q Consensus 331 L~~L~l~~N~l~~~~p~ 347 (404)
|+.|+|++|++++..|.
T Consensus 286 L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TCEEECCSCCCCHHHHH
T ss_pred cCEEEecCCCCCCcCHH
Confidence 99999999999876554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.6e-26 Score=220.28 Aligned_cols=243 Identities=21% Similarity=0.231 Sum_probs=196.0
Q ss_pred CCChhhcCCC----cCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCC
Q 046992 5 IISPQISNLS----KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTL 80 (404)
Q Consensus 5 ~~p~~~~~l~----~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 80 (404)
.+|..+..+. +|++|++++|.+++..|.. |..+++|++|++++|.+++..| +..+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~--l~~l 79 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAAD-------------------LAPFTKLELLNLSSNVLYETLD--LESL 79 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGG-------------------GTTCTTCCEEECTTSCCEEEEE--CTTC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHH-------------------HhCCCCCCEEEeeCCCCCCCcc--cccC
Confidence 3555555554 8999999999998666666 8889999999999999986555 8899
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCcc
Q 046992 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLS 160 (404)
Q Consensus 81 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (404)
++|++|++++|.+++. + ..++|++|++++|.+++ ++. ..+++|+.|++++|.+++..|..
T Consensus 80 ~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~-------------~~~--~~l~~L~~L~L~~N~l~~~~~~~ 139 (487)
T 3oja_A 80 STLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISR-------------VSC--SRGQGKKNIYLANNKITMLRDLD 139 (487)
T ss_dssp TTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCC-------------EEE--CCCSSCEEEECCSSCCCSGGGBC
T ss_pred CCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCC-------------CCc--cccCCCCEEECCCCCCCCCCchh
Confidence 9999999999998742 2 33899999999999882 222 34688999999999999777878
Q ss_pred ccC-CcccEEEcccCcCccCCC-ccC-CCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc
Q 046992 161 IGN-LTLSFLVLDTNQFTSYVP-NIC-HSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE 237 (404)
Q Consensus 161 ~~~-~~L~~L~l~~n~l~~~~~-~l~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~ 237 (404)
+.. ++|+.|++++|.+++..+ .+. .+++|+.|++++|.+.+. +. ...+++|+.|++++|.+++
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~------------~~~l~~L~~L~Ls~N~l~~- 205 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG------------QVVFAKLKTLDLSSNKLAF- 205 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC------------CCCCTTCCEEECCSSCCCE-
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc------------cccCCCCCEEECCCCCCCC-
Confidence 877 899999999999998666 554 789999999999998744 21 2357899999999999984
Q ss_pred CCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcC
Q 046992 238 LSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNL 317 (404)
Q Consensus 238 ~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l 317 (404)
+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+...
T Consensus 206 -----------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~--------------- 252 (487)
T 3oja_A 206 -----------------MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG--------------- 252 (487)
T ss_dssp -----------------ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHH---------------
T ss_pred -----------------CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCc---------------
Confidence 4555777889999999999998 5788899999999999999998721
Q ss_pred cccCchhhccCCCCCEEECC
Q 046992 318 SSLIPKCFEKMHGLSGIDMS 337 (404)
Q Consensus 318 ~~~~~~~~~~l~~L~~L~l~ 337 (404)
..|..+..++.|+.++++
T Consensus 253 --~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 --TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp --HHHHHHTTCHHHHHHHHH
T ss_pred --chHHHHHhCCCCcEEecc
Confidence 145556667777777665
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-26 Score=212.40 Aligned_cols=243 Identities=19% Similarity=0.175 Sum_probs=178.1
Q ss_pred hcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch------hhhhcC-------CCCCCcEEEcCCCCCCCccccc
Q 046992 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------VYFFIG-------QLKSLFELDLSLNQLSGSIFLS 76 (404)
Q Consensus 10 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~------~~~~l~-------~l~~L~~L~Ls~n~i~~~~~~~ 76 (404)
+...++|++|++++|.+ .+|..+... |+.|+++.. .+..+. ++++|++|++++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45677899999999998 778776654 777766542 233333 6888999999999888777776
Q ss_pred c--cCCCCCCEEEccCCcccccCCccccCC-----CCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCc
Q 046992 77 W--VTLSNFSRVYIYDNLLSGTISPFIGNL-----TSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLR 149 (404)
Q Consensus 77 ~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~ 149 (404)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+ ..+..++.+++|++|+++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN------------FSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC------------CCTTTCCCCSSCCEEECC
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc------------chHHHhccCCCCCEEECC
Confidence 5 7888899999999888855 7777666 888999988888872 344778888889999999
Q ss_pred ccccccc--cCccc--cC-CcccEEEcccCcCccCCC----ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCcccccc
Q 046992 150 HNNLSGS--LPLSI--GN-LTLSFLVLDTNQFTSYVP----NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAF 220 (404)
Q Consensus 150 ~n~i~~~--~~~~~--~~-~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~ 220 (404)
+|++.+. .+..+ .. ++|++|++++|.+.+... .+..+++|+.|++++|.+.+..|... +..
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~~~ 251 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS----------CDW 251 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC----------CCC
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh----------hhh
Confidence 8887644 23333 44 788888888888874322 23466788888888888876553211 344
Q ss_pred CCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccc
Q 046992 221 YATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFS 300 (404)
Q Consensus 221 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 300 (404)
+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 252 l~~L~~L~Ls~N~l~------------------~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK------------------QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCS------------------SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccC------------------hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 678888888888886 2344444 6788888888888854 55 788888888888888886
Q ss_pred c
Q 046992 301 Q 301 (404)
Q Consensus 301 ~ 301 (404)
+
T Consensus 310 ~ 310 (312)
T 1wwl_A 310 D 310 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.4e-23 Score=187.17 Aligned_cols=208 Identities=24% Similarity=0.188 Sum_probs=170.6
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS 136 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~ 136 (404)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++ +..+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------SLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------EECTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC------------ccChhh
Confidence 57999999999998776778999999999999999998777778999999999999999988 244577
Q ss_pred ccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCC-C-ccCCCCCCCEEECCCCcccCCCchhhhcCCCC
Q 046992 137 IGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYV-P-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISL 213 (404)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~-~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 213 (404)
+..+++|++|++++|.+++..+..+.. ++|++|++++|.+.... + .+..+++|++|++++|.+.+..+..+..+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--- 172 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--- 172 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH---
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh---
Confidence 889999999999999998655556777 89999999999998743 4 78889999999999999886666655443
Q ss_pred CccccccCCCcc-EEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeE
Q 046992 214 TTAYFAFYATLT-FLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYL 292 (404)
Q Consensus 214 ~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 292 (404)
..++.+. .|++++|.+++. +.......+|++|++++|++++..+..+..+++|++|
T Consensus 173 -----~~L~~l~l~L~ls~n~l~~~------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 173 -----HQMPLLNLSLDLSLNPMNFI------------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp -----HTCTTCCEEEECCSSCCCEE------------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred -----hhccccceeeecCCCccccc------------------CccccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 2233343 899999998743 3333344589999999999997666778899999999
Q ss_pred eCCCCccccc
Q 046992 293 DLSANSFSQS 302 (404)
Q Consensus 293 ~L~~n~l~~~ 302 (404)
++++|.+.+.
T Consensus 230 ~l~~N~~~c~ 239 (276)
T 2z62_A 230 WLHTNPWDCS 239 (276)
T ss_dssp ECCSSCBCCC
T ss_pred EccCCccccc
Confidence 9999999864
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=189.32 Aligned_cols=229 Identities=18% Similarity=0.137 Sum_probs=147.6
Q ss_pred EEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCC
Q 046992 61 ELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL 140 (404)
Q Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l 140 (404)
+.+..+..++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|+++ +..+..+..+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l 75 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------TIEDGAYQSL 75 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC------------EECTTTTTTC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC------------ccCHHHccCC
Confidence 4555666665 4555442 57888888888887666667888888888888888877 2334567788
Q ss_pred CCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCC-CchhhhcCCCCCccc
Q 046992 141 TNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGP-IPKSLRNCISLTTAY 217 (404)
Q Consensus 141 ~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~~~ 217 (404)
++|++|++++|++++..+..+.. ++|++|++++|.+....+ .+..+++|++|++++|.+.+. +|..+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~---------- 145 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---------- 145 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG----------
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh----------
Confidence 88888888888887665566666 778888888877777655 566677777777777766542 34433
Q ss_pred cccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCC-EEEcCCCcCCCCCchhccCCCCCCeEeCCC
Q 046992 218 FAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPT-KLTLRENQLSGHLPRGLNSLIQLEYLDLSA 296 (404)
Q Consensus 218 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (404)
..+++|+.|++++|.+++..+..+..+. .++.+. +|++++|.+.+..+.. ....+|++|++++
T Consensus 146 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------------~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~ 209 (276)
T 2z62_A 146 -SNLTNLEHLDLSSNKIQSIYCTDLRVLH--------------QMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDT 209 (276)
T ss_dssp -GGCTTCCEEECCSSCCCEECGGGGHHHH--------------TCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCS
T ss_pred -ccCCCCCEEECCCCCCCcCCHHHhhhhh--------------hccccceeeecCCCcccccCccc-cCCCcccEEECCC
Confidence 4456666777777766654333333222 122222 5666666666333332 2333566666666
Q ss_pred CcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC
Q 046992 297 NSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS 348 (404)
Q Consensus 297 n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 348 (404)
|.+++ ..+..|..+++|+.|++++|++++..+..
T Consensus 210 n~l~~------------------~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 210 NQLKS------------------VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SCCSC------------------CCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred Cceee------------------cCHhHhcccccccEEEccCCcccccCCch
Confidence 65553 24445677888888888888887666544
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.5e-23 Score=188.22 Aligned_cols=204 Identities=25% Similarity=0.155 Sum_probs=150.6
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccc
Q 046992 77 WVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGS 156 (404)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 156 (404)
+..+++++++++.++.++ .+|..+. +.+++|++++|+++ +..+..|..+++|++|++++|.+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY------------TFSLATLMPYTRLTQLNLDRAELTK- 69 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS------------EEEGGGGTTCTTCCEEECTTSCCCE-
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC------------ccCHHHhhcCCCCCEEECCCCccCc-
Confidence 567888999999999987 5666554 68899999999887 2346678889999999999999884
Q ss_pred cCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccC
Q 046992 157 LPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFY 235 (404)
Q Consensus 157 ~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~ 235 (404)
++.. .. ++|++|++++|.+..++..+..+++|+.|++++|.+.+..+.. |..+++|+.|++++|.++
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-----------~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA-----------LRGLGELQELYLKGNELK 137 (290)
T ss_dssp EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSST-----------TTTCTTCCEEECTTSCCC
T ss_pred ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHH-----------HcCCCCCCEEECCCCCCC
Confidence 3433 34 7888888888888876666777788888888888776433333 456677888888888776
Q ss_pred ccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCC
Q 046992 236 NELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYN 315 (404)
Q Consensus 236 ~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n 315 (404)
+.. +..+..+++|++|++++|++++..+..+..+++|+.|++++|.++.
T Consensus 138 ~~~-----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-------------- 186 (290)
T 1p9a_G 138 TLP-----------------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-------------- 186 (290)
T ss_dssp CCC-----------------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--------------
T ss_pred ccC-----------------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--------------
Confidence 432 2234567778888888888875555566778888888888887764
Q ss_pred cCcccCchhhccCCCCCEEECCCCcCccc
Q 046992 316 NLSSLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 316 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
+|..+..+.+|+.+++++|++.+.
T Consensus 187 -----ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 187 -----IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp -----CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred -----cChhhcccccCCeEEeCCCCccCc
Confidence 566666677888888888887653
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.5e-22 Score=201.62 Aligned_cols=250 Identities=22% Similarity=0.174 Sum_probs=152.9
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccc
Q 046992 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSI 137 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~ 137 (404)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-------------~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-------------SLPV-- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-------------CCCC--
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-------------cCCC--
Confidence 4566666666655 4444443 56666666666655 3333 3455666666666655 3333
Q ss_pred cCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccc
Q 046992 138 GNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAY 217 (404)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~ 217 (404)
.+++|++|++++|.++ .+|. ...+|+.|++++|.++.++.. +++|++|++++|.+.+ +|.
T Consensus 99 -~l~~L~~L~Ls~N~l~-~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~------------ 158 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLT-HLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA------------ 158 (622)
T ss_dssp -CCTTCCEEEECSCCCC-CCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC------------
T ss_pred -CCCCCCEEECcCCcCC-CCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC------------
Confidence 3455555555555555 2333 114555555555555553332 2555555555555542 221
Q ss_pred cccCCCccEEeCCCcccCccCCccccccCCccEEEE------ecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCe
Q 046992 218 FAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEY 291 (404)
Q Consensus 218 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (404)
.+++|+.|++++|.+++. | ..+++|+.|++ .+|. .+++|+.|++++|.++ .+|. .+++|+.
T Consensus 159 --~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~ 225 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKE 225 (622)
T ss_dssp --CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCE
T ss_pred --ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCC---CCCCCCE
Confidence 123344444444444331 2 22344444444 2333 3578999999999998 5554 3589999
Q ss_pred EeCCCCcccccccc--cccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCC
Q 046992 292 LDLSANSFSQSIPE--LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLC 366 (404)
Q Consensus 292 L~L~~n~l~~~~~~--~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 366 (404)
|++++|.+++.... -.+.|++++|.|+. +|. .+++|+.|++++|+++..++....+++++.+++.+|+...
T Consensus 226 L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 226 LIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred EEccCCccCcCCCCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 99999999874322 33499999999997 444 6789999999999999554455788999999999998654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.8e-22 Score=180.54 Aligned_cols=205 Identities=22% Similarity=0.241 Sum_probs=126.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCcc
Q 046992 81 SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLS 160 (404)
Q Consensus 81 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (404)
...++++++++.++ .+|..+. +++++|++++|++++ ..+..|..+++|++|++++|.++...+..
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSS------------LPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSC------------CCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCe------------eCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 35677888888877 5665544 578888888888771 22346777888888888888877433334
Q ss_pred ccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccC
Q 046992 161 IGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNEL 238 (404)
Q Consensus 161 ~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~ 238 (404)
+.. ++|++|++++|.+...++ .+..+++|++|++++|.+.+..+.. |..+++|+.|++++|.+++..
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-----------FDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT-----------TTTCTTCCEEECCSSCCCCCC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH-----------hCcCcCCCEEECCCCcCCccC
Confidence 455 777777777777776555 4556666777777666665333322 344556666666666665321
Q ss_pred CccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCc
Q 046992 239 SSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLS 318 (404)
Q Consensus 239 ~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~ 318 (404)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 150 -----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 196 (270)
T 2o6q_A 150 -----------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV---------------- 196 (270)
T ss_dssp -----------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC----------------
T ss_pred -----------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC----------------
Confidence 11244556666666666666654445566666666666666655532
Q ss_pred ccCchhhccCCCCCEEECCCCcCcccCC
Q 046992 319 SLIPKCFEKMHGLSGIDMSYNELEGSTP 346 (404)
Q Consensus 319 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p 346 (404)
.+..|..+++|+.|++++|++.+..+
T Consensus 197 --~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 --PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp --CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred --CHHHhccccCCCEEEecCCCeeCCCc
Confidence 33345666666777777666654443
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=1.1e-25 Score=225.33 Aligned_cols=341 Identities=11% Similarity=0.026 Sum_probs=195.6
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccC-C-ccccccccch-------hhhhcCCCCCCcEEEcCCCCCCCc----cccccc
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLL-T-HLKVTCTTWL-------VYFFIGQLKSLFELDLSLNQLSGS----IFLSWV 78 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l-~-~L~~l~l~~~-------~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~ 78 (404)
.+++|++|++++|.+++..+..+... + +|++|++... .......+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56777777777777665555555553 3 3777766432 222334677788888888776544 333445
Q ss_pred CCCCCCEEEccCCccc----ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccc
Q 046992 79 TLSNFSRVYIYDNLLS----GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLS 154 (404)
Q Consensus 79 ~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 154 (404)
.+++|++|++++|.++ ..++..+.++++|++|++++|.+. .++..+..+++|++|+++.....
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-------------~l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-------------ELVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-------------GGHHHHHHCTTCCEEEECBCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-------------HHHHHHhhhhHHHhhcccccccc
Confidence 6777777877777775 233344556777888887777765 24444555555555555432211
Q ss_pred ---cccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCc-hhhhcCCCCCccc------------
Q 046992 155 ---GSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIP-KSLRNCISLTTAY------------ 217 (404)
Q Consensus 155 ---~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~~~------------ 217 (404)
...+..+.. ++|+.+.++++.....+..+..+++|++|++++|.+.+... ..+..+++|+...
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~ 336 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred cchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH
Confidence 011122222 44555555443322222234445555555555555432222 2234444444221
Q ss_pred -cccCCCccEEeCCC-----------cccCccC-CccccccCCccEEEEe---c----Ccccc-CCCCCCEEEcC----C
Q 046992 218 -FAFYATLTFLDLSH-----------NNFYNEL-SSNWAKCAKLGSLNFS---I----PMELG-KLNSPTKLTLR----E 272 (404)
Q Consensus 218 -~~~~~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~l~---~----p~~~~-~l~~L~~L~L~----~ 272 (404)
+..+++|++|++++ +.+++.. ......+++|+.|++. + +..+. .+++|++|+++ .
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 24567888888883 4554432 2224457888888771 1 11222 37788888885 5
Q ss_pred CcCCCC-----CchhccCCCCCCeEeCCCCc--ccccccc-------cccceecCCCcCccc-CchhhccCCCCCEEECC
Q 046992 273 NQLSGH-----LPRGLNSLIQLEYLDLSANS--FSQSIPE-------LCNLLNTAYNNLSSL-IPKCFEKMHGLSGIDMS 337 (404)
Q Consensus 273 n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~-------~~~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 337 (404)
|.+++. ++..+..+++|++|++++|. +++..+. -.+.|++++|++++. .+..+.++++|++|+|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 566643 33345668888888887543 4432221 234788888888763 34455778888888888
Q ss_pred CCcCccc-CCCC-cccCCCChhhhccCcCC
Q 046992 338 YNELEGS-TPNS-AVFRDAPLAALQKNKRL 365 (404)
Q Consensus 338 ~N~l~~~-~p~~-~~~~~l~~~~~~~n~~~ 365 (404)
+|++++. ++.. ..+++++.+++++|+..
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 8887643 2222 35778888888888733
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3e-22 Score=182.09 Aligned_cols=204 Identities=23% Similarity=0.202 Sum_probs=128.1
Q ss_pred hcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEcc
Q 046992 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIY 89 (404)
Q Consensus 10 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 89 (404)
+++++++++++++++.++ .+|.. + .+++++|++++|.+++..+..|..+++|++|+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~-------------------~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 63 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPD-------------------L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSC-------------------C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT
T ss_pred ccccCCccEEECCCCCCC-cCCCC-------------------C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECC
Confidence 556677777777777776 55554 2 2466777777777765556667777777777777
Q ss_pred CCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccCCcccEE
Q 046992 90 DNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFL 169 (404)
Q Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L 169 (404)
+|.+++. +.. ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 64 ~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-------- 120 (290)
T 1p9a_G 64 RAELTKL-QVD-GTLPVLGTLDLSHNQLQ-------------SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-------- 120 (290)
T ss_dssp TSCCCEE-ECC-SCCTTCCEEECCSSCCS-------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTT--------
T ss_pred CCccCcc-cCC-CCCCcCCEEECCCCcCC-------------cCchhhccCCCCCEEECCCCcCcccCHHHH--------
Confidence 7776632 222 56666777777777666 455566666666666666666663333334
Q ss_pred EcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCcc
Q 046992 170 VLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLG 249 (404)
Q Consensus 170 ~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 249 (404)
..+++|+.|++++|.+.+..+.. |..+++|+.|++++|++++..
T Consensus 121 --------------~~l~~L~~L~L~~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~l~~l~----------- 164 (290)
T 1p9a_G 121 --------------RGLGELQELYLKGNELKTLPPGL-----------LTPTPKLEKLSLANNNLTELP----------- 164 (290)
T ss_dssp --------------TTCTTCCEEECTTSCCCCCCTTT-----------TTTCTTCCEEECTTSCCSCCC-----------
T ss_pred --------------cCCCCCCEEECCCCCCCccChhh-----------cccccCCCEEECCCCcCCccC-----------
Confidence 44444555555555444222211 345566777777777766321
Q ss_pred EEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccc
Q 046992 250 SLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 250 ~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
+..+..+++|++|++++|+++ .+|..+..++.|+.++|++|.+..
T Consensus 165 ------~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 165 ------AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ------HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 123456777888888888887 677777777788888888887763
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=8.3e-23 Score=184.17 Aligned_cols=220 Identities=23% Similarity=0.219 Sum_probs=146.0
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccc
Q 046992 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSI 137 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~ 137 (404)
++..+++..+.+... .....+++|+.|++.+|.++ .+ ..+..+++|++|++++|.++ .+ ..+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~-------------~~-~~l 81 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLH-------------DI-SAL 81 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCC-------------CC-GGG
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCC-------------Cc-hhh
Confidence 344455555555432 23445666677777766664 22 24566677777777777665 22 356
Q ss_pred cCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCc
Q 046992 138 GNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTT 215 (404)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 215 (404)
..+++|++|++++|.+++..+..+.. ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+..
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------- 152 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV--------- 152 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH---------
Confidence 66677777777777776444444555 667777777777766655 4567777888888888776433332
Q ss_pred cccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCC
Q 046992 216 AYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLS 295 (404)
Q Consensus 216 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 295 (404)
+..+++|+.|++++|.+++.. +..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 153 --~~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 153 --FDKLTNLTELDLSYNQLQSLP-----------------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp --TTTCTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred --hccCccCCEEECCCCCcCccC-----------------HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 356678888899888887532 2335678889999999999987777778899999999999
Q ss_pred CCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCC
Q 046992 296 ANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNS 348 (404)
Q Consensus 296 ~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 348 (404)
+|.+.+. +++|+.+++.+|.++|.+|..
T Consensus 214 ~N~~~~~-------------------------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 214 DNPWDCT-------------------------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SSCBCCC-------------------------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCCcccc-------------------------CcHHHHHHHHHHhCCCcccCc
Confidence 9988653 345666666666666665544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=183.57 Aligned_cols=203 Identities=20% Similarity=0.125 Sum_probs=116.8
Q ss_pred hcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch---hhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEE
Q 046992 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL---VYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRV 86 (404)
Q Consensus 10 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (404)
+..+++|+.|++++|.+. .++ .+..+++|++|+++++ ....+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 456788888888888876 443 4556666666665432 22345556666666666666655444455566666666
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-Cc
Q 046992 87 YIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LT 165 (404)
Q Consensus 87 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~ 165 (404)
++++|.+++..+..|..+++|++|++++|++++ ..+..+..+++|++|++++|++++..+..+.. ++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCc------------cCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 666666654444455566666666666665551 22333455666666666666665433434444 56
Q ss_pred ccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccc
Q 046992 166 LSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAK 244 (404)
Q Consensus 166 L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 244 (404)
|++|++++|.+.+..+ .+..+++|+.|++++|.+. +.+++|+.++++.|.+++.+|.+++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------------------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------------------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 6666666666665554 3455666666666666544 23445556666666666655554443
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.4e-24 Score=200.07 Aligned_cols=269 Identities=18% Similarity=0.123 Sum_probs=189.4
Q ss_pred EeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCccc----ccccCCC-CCCEEEccCCc
Q 046992 18 YLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIF----LSWVTLS-NFSRVYIYDNL 92 (404)
Q Consensus 18 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~l~~n~ 92 (404)
++.+++|.+++.+|.. +...++|++|++++|.+++..+ ..+..++ +|++|++++|.
T Consensus 2 ~~~ls~n~~~~~~~~~-------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-------------------TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp EEECCCCTTCCHHHHH-------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred ccccccccchHHHHHH-------------------HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence 4567777777666554 5666679999999999986666 6788888 89999999999
Q ss_pred ccccCCccccCC-----CCCCEEECcCCcCCCCCccCCCCcccccCCccccCC-CCCCEEeCcccccccccCcccc----
Q 046992 93 LSGTISPFIGNL-----TSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL-TNLRKLFLRHNNLSGSLPLSIG---- 162 (404)
Q Consensus 93 l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~---- 162 (404)
+++..+..+..+ ++|++|++++|++++..+. .+...+..+ ++|++|++++|.+++..+..+.
T Consensus 63 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 134 (362)
T 3goz_A 63 LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD--------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH--------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH--------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHH
Confidence 987666666654 8999999999998732110 111224455 7999999999999855444432
Q ss_pred C--CcccEEEcccCcCccCCC-----ccCCCC-CCCEEECCCCcccCCCchhhhcCCCCCccccccC-CCccEEeCCCcc
Q 046992 163 N--LTLSFLVLDTNQFTSYVP-----NICHSG-LLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFY-ATLTFLDLSHNN 233 (404)
Q Consensus 163 ~--~~L~~L~l~~n~l~~~~~-----~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~-~~L~~L~l~~n~ 233 (404)
. .+|++|++++|.+.+... .+...+ +|++|++++|.+.+..+..+... +..+ ++|+.|++++|.
T Consensus 135 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF-------LASIPASVTSLDLSANL 207 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------HHTSCTTCCEEECTTSC
T ss_pred hCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH-------HHhCCCCCCEEECCCCC
Confidence 2 489999999998885333 233444 89999999999887766655432 3455 489999999998
Q ss_pred cCccCCccccccCCccEEEEecCccccC-CCCCCEEEcCCCcCCCCCc----hhccCCCCCCeEeCCCCccccccccccc
Q 046992 234 FYNELSSNWAKCAKLGSLNFSIPMELGK-LNSPTKLTLRENQLSGHLP----RGLNSLIQLEYLDLSANSFSQSIPELCN 308 (404)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~~p~~~~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 308 (404)
+++.... .++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..
T Consensus 208 i~~~~~~-------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~-- 272 (362)
T 3goz_A 208 LGLKSYA-------------ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ-- 272 (362)
T ss_dssp GGGSCHH-------------HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH--
T ss_pred CChhHHH-------------HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH--
Confidence 8753222 12334444 4589999999999986544 34567789999999999855322110
Q ss_pred ceecCCCcCcccCchhhccCCCCCEEECCCCcCccc
Q 046992 309 LLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
+ ..++..+..+++|+.|++++|++...
T Consensus 273 --------~-~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 273 --------C-KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp --------H-HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred --------H-HHHHHHhccCCceEEEecCCCcCCCc
Confidence 0 11344577788899999999998755
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.2e-21 Score=174.66 Aligned_cols=201 Identities=26% Similarity=0.249 Sum_probs=166.5
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC-c
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP-S 135 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~-~ 135 (404)
.+.++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|+++ .++ .
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------~i~~~ 79 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------------TLPAG 79 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-------------CCCTT
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-------------eeChh
Confidence 35789999999998 5666553 68999999999998666678999999999999999988 344 4
Q ss_pred cccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCC
Q 046992 136 SIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISL 213 (404)
Q Consensus 136 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 213 (404)
.|..+++|++|++++|++++..+..+.. ++|++|++++|.+....+ .+..+++|++|++++|.+.+..+..
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------- 152 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV------- 152 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH-------
Confidence 4578999999999999998555556666 899999999999998877 6788999999999999987433322
Q ss_pred CccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEe
Q 046992 214 TTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLD 293 (404)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 293 (404)
|..+++|+.|++++|.+++.. +..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 153 ----~~~l~~L~~L~L~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 153 ----FDKLTSLKELRLYNNQLKRVP-----------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp ----TTTCTTCCEEECCSSCCSCCC-----------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----ccCCcccceeEecCCcCcEeC-----------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 467789999999999987532 23466788999999999999976677788999999999
Q ss_pred CCCCcccc
Q 046992 294 LSANSFSQ 301 (404)
Q Consensus 294 L~~n~l~~ 301 (404)
+++|.+..
T Consensus 212 l~~N~~~c 219 (270)
T 2o6q_A 212 LQENPWDC 219 (270)
T ss_dssp CCSSCBCC
T ss_pred ecCCCeeC
Confidence 99999874
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.7e-24 Score=203.94 Aligned_cols=251 Identities=17% Similarity=0.154 Sum_probs=162.7
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCC---CCcccccc----
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQL---SGSIFLSW---- 77 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i---~~~~~~~~---- 77 (404)
.++.++..+++|++|++++|.+.+..+..+ ...+..+++|++|++++|.+ ++.+|..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWL---------------SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHH---------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHH---------------HHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 355666777777777777777664433332 12266778888888888643 33444443
Q ss_pred ---cCCCCCCEEEccCCcccc----cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCC---------C
Q 046992 78 ---VTLSNFSRVYIYDNLLSG----TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNL---------T 141 (404)
Q Consensus 78 ---~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l---------~ 141 (404)
..+++|++|++++|.+.. .++..+..+++|++|++++|.++...+. .++..+..+ +
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------KIARALQELAVNKKAKNAP 159 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------HHHHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------HHHHHHHHHhhhhhcccCC
Confidence 577888888888888775 3566777788888888888877511000 122223333 7
Q ss_pred CCCEEeCcccccc-cccC---ccccC-CcccEEEcccCcCcc-----CCC-ccCCCCCCCEEECCCCccc----CCCchh
Q 046992 142 NLRKLFLRHNNLS-GSLP---LSIGN-LTLSFLVLDTNQFTS-----YVP-NICHSGLLEKYTNGNNRFL----GPIPKS 206 (404)
Q Consensus 142 ~L~~L~l~~n~i~-~~~~---~~~~~-~~L~~L~l~~n~l~~-----~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~ 206 (404)
+|++|++++|+++ ..++ ..+.. ++|++|++++|.+.. ..+ .+..+++|+.|++++|.+. ..+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 8888888888876 2333 23334 678888888887762 223 5667788888888888775 233433
Q ss_pred hhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccc--cCCCCCCEEEcCCCcCCC----CCc
Q 046992 207 LRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMEL--GKLNSPTKLTLRENQLSG----HLP 280 (404)
Q Consensus 207 ~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~--~~l~~L~~L~L~~n~l~~----~~~ 280 (404)
+..+++|+.|++++|.+++.... .++..+ ..+++|++|+|++|.+++ .+|
T Consensus 240 -----------l~~~~~L~~L~L~~n~i~~~~~~-------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 240 -----------LKSWPNLRELGLNDCLLSARGAA-------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp -----------GGGCTTCCEEECTTCCCCHHHHH-------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred -----------HccCCCcCEEECCCCCCchhhHH-------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 35567788888888887653211 123344 237788888888888875 366
Q ss_pred hhc-cCCCCCCeEeCCCCccccc
Q 046992 281 RGL-NSLIQLEYLDLSANSFSQS 302 (404)
Q Consensus 281 ~~l-~~l~~L~~L~L~~n~l~~~ 302 (404)
..+ ..+++|++|++++|.+++.
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHhcCCCceEEEccCCcCCcc
Confidence 666 5578888888888888764
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=184.91 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=143.5
Q ss_pred CCcEEEcCCCCCCCcccc---cccCCCCCCEEEccCCcccccCCccc--cCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 58 SLFELDLSLNQLSGSIFL---SWVTLSNFSRVYIYDNLLSGTISPFI--GNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------~ 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------L 136 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------H
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------h
Confidence 466777777766422111 12234667888888877776677666 7777788888887777632211 0
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCcc---CCC--ccCCCCCCCEEECCCCcccCCCchh
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTS---YVP--NICHSGLLEKYTNGNNRFLGPIPKS 206 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~---~~~--~l~~~~~L~~L~l~~n~~~~~~~~~ 206 (404)
....+..+++|++|++++|++++..+..+.. ++|++|++++|.+.+ ... .+..+++|++|++++|.+. .++..
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 215 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV 215 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH
Confidence 0123346777777777777777555566666 777777777777643 211 3356677777777777764 22221
Q ss_pred hhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCC
Q 046992 207 LRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSL 286 (404)
Q Consensus 207 ~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 286 (404)
... .+..+++|++|++++|.+++..|..+..+ ..+++|++|++++|+++ .+|..+.
T Consensus 216 ~~~-------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~--------------~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 216 CAA-------LAAAGVQPHSLDLSHNSLRATVNPSAPRC--------------MWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp HHH-------HHHHTCCCSSEECTTSCCCCCCCSCCSSC--------------CCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred HHH-------HHhcCCCCCEEECCCCCCCccchhhHHhc--------------cCcCcCCEEECCCCCCC-chhhhhc--
Confidence 100 13456677777777777765443322221 12357777777777777 5555543
Q ss_pred CCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcc
Q 046992 287 IQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEG 343 (404)
Q Consensus 287 ~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 343 (404)
++|++|+|++|++++ +|. +..+++|+.|++++|+++.
T Consensus 272 ~~L~~L~Ls~N~l~~-------------------~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNR-------------------APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCS-------------------CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCC-------------------Cch-hhhCCCccEEECcCCCCCC
Confidence 677777777777764 233 5667888888888888763
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.7e-23 Score=187.66 Aligned_cols=205 Identities=19% Similarity=0.153 Sum_probs=166.3
Q ss_pred CCCCCcEEEcCCCCCCCcccccc--cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEECcCCcCCCCCccCCCCc
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSW--VTLSNFSRVYIYDNLLSGTIS----PFIGNLTSLVDLQLNSNQLIGHIPNLRQNQ 128 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~ 128 (404)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---------- 158 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP---------- 158 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC----------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc----------
Confidence 45679999999999998888887 899999999999999986544 34567999999999999997
Q ss_pred ccccCCccccCCCCCCEEeCcccccccc--cC--ccccC-CcccEEEcccCcCccCCC----ccCCCCCCCEEECCCCcc
Q 046992 129 FRGFLPSSIGNLTNLRKLFLRHNNLSGS--LP--LSIGN-LTLSFLVLDTNQFTSYVP----NICHSGLLEKYTNGNNRF 199 (404)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~--~~~~~-~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~~ 199 (404)
+..+..++.+++|++|++++|++.+. ++ ..+.. ++|++|++++|.++.... .+..+++|++|++++|.+
T Consensus 159 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 159 --AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp --CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred --hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 24567888999999999999997642 22 22344 889999999999975443 235779999999999999
Q ss_pred cCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCC
Q 046992 200 LGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHL 279 (404)
Q Consensus 200 ~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~ 279 (404)
.+..|..+..+ ..+++|++|++++|.++. +|..+. ++|++|++++|++++ +
T Consensus 237 ~~~~p~~~~~~--------~~~~~L~~L~Ls~N~l~~------------------lp~~~~--~~L~~L~Ls~N~l~~-~ 287 (310)
T 4glp_A 237 RATVNPSAPRC--------MWSSALNSLNLSFAGLEQ------------------VPKGLP--AKLRVLDLSSNRLNR-A 287 (310)
T ss_dssp CCCCCSCCSSC--------CCCTTCCCEECCSSCCCS------------------CCSCCC--SCCSCEECCSCCCCS-C
T ss_pred CccchhhHHhc--------cCcCcCCEEECCCCCCCc------------------hhhhhc--CCCCEEECCCCcCCC-C
Confidence 97777766443 234799999999999983 344443 799999999999995 3
Q ss_pred chhccCCCCCCeEeCCCCcccc
Q 046992 280 PRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 280 ~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
|. +..+++|+.|++++|.++.
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTSC
T ss_pred ch-hhhCCCccEEECcCCCCCC
Confidence 44 6788999999999999874
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.4e-24 Score=199.13 Aligned_cols=259 Identities=16% Similarity=0.089 Sum_probs=188.7
Q ss_pred CCccCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCC-CCcEEEcCCCCCCCcccccccC
Q 046992 1 ELFGIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLK-SLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 1 ~~~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
+++|.+|+.+...++|++|++++|.+.+..+..+. ..+..++ +|++|++++|.+++..+..+..
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~---------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELI---------------QAFANTPASVTSLNLSGNSLGFKNSDELVQ 73 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------HHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHH---------------HHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence 36778888888888899999999999855552221 2277788 8999999999998777777776
Q ss_pred C-----CCCCEEEccCCcccccCCcc----ccCC-CCCCEEECcCCcCCCCCccCCCCcccccCCccccC-CCCCCEEeC
Q 046992 80 L-----SNFSRVYIYDNLLSGTISPF----IGNL-TSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGN-LTNLRKLFL 148 (404)
Q Consensus 80 l-----~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~-l~~L~~L~l 148 (404)
+ ++|++|++++|.+++..+.. +..+ ++|++|++++|+++...+. .+...+.. .++|++|++
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--------~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS--------EFKQAFSNLPASITSLNL 145 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH--------HHHHHHTTSCTTCCEEEC
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH--------HHHHHHHhCCCceeEEEc
Confidence 5 99999999999998665554 4444 8999999999998732110 11122344 369999999
Q ss_pred cccccccccC----ccccC--CcccEEEcccCcCccCCC-----ccCCC-CCCCEEECCCCcccCCCchhhhcCCCCCcc
Q 046992 149 RHNNLSGSLP----LSIGN--LTLSFLVLDTNQFTSYVP-----NICHS-GLLEKYTNGNNRFLGPIPKSLRNCISLTTA 216 (404)
Q Consensus 149 ~~n~i~~~~~----~~~~~--~~L~~L~l~~n~l~~~~~-----~l~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~ 216 (404)
++|.+++..+ ..+.. .+|++|++++|.+++..+ .+... ++|++|++++|.+.......+..
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~------- 218 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY------- 218 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-------
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-------
Confidence 9999985333 33344 389999999999987654 23344 59999999999988643333321
Q ss_pred cccc-CCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCC-------chhccCCCC
Q 046992 217 YFAF-YATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHL-------PRGLNSLIQ 288 (404)
Q Consensus 217 ~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~l~~ 288 (404)
.+.. .++|++|++++|.+++..+..+ ...+..+++|++|++++|.+.+.. +..+..+++
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l-------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENL-------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHH-------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHH-------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 1233 4689999999999986544322 233466788999999999855332 345678889
Q ss_pred CCeEeCCCCccccc
Q 046992 289 LEYLDLSANSFSQS 302 (404)
Q Consensus 289 L~~L~L~~n~l~~~ 302 (404)
|++|++++|.+...
T Consensus 286 L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 286 IILVDKNGKEIHPS 299 (362)
T ss_dssp EEEECTTSCBCCGG
T ss_pred eEEEecCCCcCCCc
Confidence 99999999998764
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.1e-22 Score=174.21 Aligned_cols=178 Identities=17% Similarity=0.106 Sum_probs=121.2
Q ss_pred cCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCC-CCCcccccccCCCCCCEEEccC-Cc
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQ-LSGSIFLSWVTLSNFSRVYIYD-NL 92 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~-n~ 92 (404)
+|++|++++|++++..+.. |..+++|++|++++|. ++...+..|..+++|++|++++ |.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~-------------------~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHA-------------------FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TCCEEEEESCCCSEECTTT-------------------TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred cccEEEEeCCcceEECHHH-------------------ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 6777777777776433334 6677778888888886 7655555777788888888877 77
Q ss_pred ccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCC---EEeCccc-ccccccCccccC-Cccc
Q 046992 93 LSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLR---KLFLRHN-NLSGSLPLSIGN-LTLS 167 (404)
Q Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~i~~~~~~~~~~-~~L~ 167 (404)
+++..+..|..+++|++|++++|+++ .+|. +..+++|+ +|++++| .+++..+..+.. ++|+
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~-------------~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLK-------------MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCC-------------SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCc-------------cccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 77555567777788888888888777 3454 66677776 7888887 777444445665 7777
Q ss_pred -EEEcccCcCccCCCccCCCCCCCEEECCCCc-ccCCCchhhhcCCCCCccccccC-CCccEEeCCCcccCc
Q 046992 168 -FLVLDTNQFTSYVPNICHSGLLEKYTNGNNR-FLGPIPKSLRNCISLTTAYFAFY-ATLTFLDLSHNNFYN 236 (404)
Q Consensus 168 -~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~~~~~~~-~~L~~L~l~~n~l~~ 236 (404)
+|++++|.+..++......++|+.|++++|+ +....+.. |..+ ++|+.|++++|.+++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-----------~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-----------FGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTT-----------TTTCSBCCSEEECTTCCCCC
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH-----------hhccccCCcEEECCCCcccc
Confidence 7888777777655543344677777777774 55222222 3555 677777777777763
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=3e-24 Score=215.00 Aligned_cols=318 Identities=13% Similarity=-0.007 Sum_probs=184.7
Q ss_pred cCcEeeCCCCc-CCC-CCCcccccCCccccccccch---------hhhhcCCCCCCcEEEcCCCCCCC----cccccccC
Q 046992 15 KLEYLYLPFNQ-LFG-KIPPEIGLLTHLKVTCTTWL---------VYFFIGQLKSLFELDLSLNQLSG----SIFLSWVT 79 (404)
Q Consensus 15 ~L~~L~l~~n~-l~~-~~p~~l~~l~~L~~l~l~~~---------~~~~l~~l~~L~~L~Ls~n~i~~----~~~~~~~~ 79 (404)
+|++|++++|. +.. .++.....+++|++|+++++ .+..+..+++|++|++++|.+++ .++..+..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 37777777765 110 12222336677777777543 33345567777777777777752 23344556
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCC----------ccCCCCcc----cccCCccccCCCCCCE
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHI----------PNLRQNQF----RGFLPSSIGNLTNLRK 145 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------~~l~~n~~----~~~~~~~~~~l~~L~~ 145 (404)
+++|++|++++|.+. .++..+..+++|++|+++........ +.+..-.+ ...+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 777777777777766 35566677777777777643211000 00000000 0133444445555666
Q ss_pred EeCcccccccccC-ccccC-CcccEEEcccCcCccC-CC-ccCCCCCCCEEECCC-----------CcccCCCchhhhcC
Q 046992 146 LFLRHNNLSGSLP-LSIGN-LTLSFLVLDTNQFTSY-VP-NICHSGLLEKYTNGN-----------NRFLGPIPKSLRNC 210 (404)
Q Consensus 146 L~l~~n~i~~~~~-~~~~~-~~L~~L~l~~n~l~~~-~~-~l~~~~~L~~L~l~~-----------n~~~~~~~~~~~~l 210 (404)
|++++|.+++... ..+.. ++|+.|+++ +.+... .+ ....+++|++|++++ +.+.......
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~---- 372 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA---- 372 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH----
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH----
Confidence 6666555443222 11233 555555555 222211 11 223345566666652 2222111111
Q ss_pred CCCCccccccCCCccEEeCCCcccCccCCccccc-cCCccEEEEe----------------cCccccCCCCCCEEEcCCC
Q 046992 211 ISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAK-CAKLGSLNFS----------------IPMELGKLNSPTKLTLREN 273 (404)
Q Consensus 211 ~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----------------~p~~~~~l~~L~~L~L~~n 273 (404)
.+..+++|+.|+++.|.+++.....+.. +++|+.|++. ++..+..+++|++|++++|
T Consensus 373 ------l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 373 ------LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp ------HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred ------HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 1234788889998888887776666665 8888888883 1122445888999999765
Q ss_pred c--CCCCCchhcc-CCCCCCeEeCCCCcccc-ccccc------ccceecCCCcCccc-CchhhccCCCCCEEECCCCcCc
Q 046992 274 Q--LSGHLPRGLN-SLIQLEYLDLSANSFSQ-SIPEL------CNLLNTAYNNLSSL-IPKCFEKMHGLSGIDMSYNELE 342 (404)
Q Consensus 274 ~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~-~~~~~------~~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 342 (404)
. +++..+..+. .+++|++|++++|.+++ .++.+ .+.|++++|.+++. .+..+..+++|+.|++++|+++
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4 5544444443 48889999999998875 23322 34899999998765 3444578999999999999987
Q ss_pred cc
Q 046992 343 GS 344 (404)
Q Consensus 343 ~~ 344 (404)
..
T Consensus 527 ~~ 528 (592)
T 3ogk_B 527 MT 528 (592)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.6e-23 Score=198.54 Aligned_cols=255 Identities=19% Similarity=0.167 Sum_probs=162.4
Q ss_pred hhcCCCCCCcEEEcCCCCCCCccc----ccccCCCCCCEEEccCCcc---cccCCccc-------cCCCCCCEEECcCCc
Q 046992 51 FFIGQLKSLFELDLSLNQLSGSIF----LSWVTLSNFSRVYIYDNLL---SGTISPFI-------GNLTSLVDLQLNSNQ 116 (404)
Q Consensus 51 ~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~L~~n~ 116 (404)
..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 346778889999999999886543 3466899999999998643 34445444 688999999999998
Q ss_pred CCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC--------------CcccEEEcccCcCccC-CC
Q 046992 117 LIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN--------------LTLSFLVLDTNQFTSY-VP 181 (404)
Q Consensus 117 l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--------------~~L~~L~l~~n~l~~~-~~ 181 (404)
+..... ..++..+..+++|++|++++|.++...+..+.. ++|++|++++|.+... .+
T Consensus 106 l~~~~~--------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 106 FGPTAQ--------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp CCTTTH--------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred CCHHHH--------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 872110 025667788899999999999887444433332 4677777777777521 11
Q ss_pred ----ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCc
Q 046992 182 ----NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPM 257 (404)
Q Consensus 182 ----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~ 257 (404)
.+..+++|++|++++|.+.......+. +..+..+++|+.|++++|.++..... .+|.
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~------~~~l~~~~~L~~L~Ls~n~l~~~g~~-------------~l~~ 238 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL------LEGLAYCQELKVLDLQDNTFTHLGSS-------------ALAI 238 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHH------HTTGGGCTTCCEEECCSSCCHHHHHH-------------HHHH
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHH------HHHhhcCCCccEEECcCCCCCcHHHH-------------HHHH
Confidence 334566777777777765421000000 01235566777777777766421000 2344
Q ss_pred cccCCCCCCEEEcCCCcCCCC----Cchhcc--CCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhh-ccCCC
Q 046992 258 ELGKLNSPTKLTLRENQLSGH----LPRGLN--SLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCF-EKMHG 330 (404)
Q Consensus 258 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~-~~l~~ 330 (404)
.+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+++.- +. .+|..+ .++++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g-------------~~-~l~~~l~~~l~~ 304 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA-------------VR-TLKTVIDEKMPD 304 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH-------------HH-HHHHHHHHHCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH-------------HH-HHHHHHHhcCCC
Confidence 455666777777777777643 344443 3677777777777665410 00 255556 66899
Q ss_pred CCEEECCCCcCcccCC
Q 046992 331 LSGIDMSYNELEGSTP 346 (404)
Q Consensus 331 L~~L~l~~N~l~~~~p 346 (404)
|+.|++++|++++..+
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 9999999999986553
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.1e-21 Score=175.55 Aligned_cols=196 Identities=22% Similarity=0.290 Sum_probs=138.9
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|+++ .
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-------------~ 99 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-------------N 99 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-------------C
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-------------C
Confidence 3456677777777777763 33 56677777777777777763 333 677777777777777776 2
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
++ .+..+++|++|++++|++++ ++. +.. ++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. +.
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~------ 168 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TP------ 168 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG------
T ss_pred ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-hh------
Confidence 32 56677777777777777763 333 455 777777777777776544 66778888888888877632 21
Q ss_pred CCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCe
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEY 291 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 291 (404)
+..+++|+.|++++|.+++. +. +..+++|++|++++|++++.. .+..+++|+.
T Consensus 169 ------l~~l~~L~~L~l~~n~l~~~------------------~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 169 ------LANLSKLTTLKADDNKISDI------------------SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp ------GTTCTTCCEEECCSSCCCCC------------------GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred ------hcCCCCCCEEECCCCccCcC------------------hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence 35677888999999888642 22 556788999999999998444 3788999999
Q ss_pred EeCCCCcccccc
Q 046992 292 LDLSANSFSQSI 303 (404)
Q Consensus 292 L~L~~n~l~~~~ 303 (404)
|++++|.+++..
T Consensus 222 L~l~~N~i~~~~ 233 (308)
T 1h6u_A 222 VTLTNQTITNQP 233 (308)
T ss_dssp EEEEEEEEECCC
T ss_pred EEccCCeeecCC
Confidence 999999987633
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.3e-21 Score=176.05 Aligned_cols=127 Identities=22% Similarity=0.378 Sum_probs=56.3
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|+++ .
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-------------~ 121 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-------------D 121 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-------------C
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-------------C
Confidence 4444445555555554442222 4444455555555554442 1 23444444555555544444 2
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCccc
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFL 200 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~ 200 (404)
++ .+..+++|++|++++|.+++ ++. +.. ++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 122 ~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 122 VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC
Confidence 22 14444445555555554442 221 333 444555555554444332 444444555555544443
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.1e-22 Score=189.03 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=59.4
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGT-ISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS 135 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~ 135 (404)
+++++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.++ +..+.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~------------~~~~~ 136 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS------------DPIVN 136 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC------------HHHHH
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC------------HHHHH
Confidence 4455555555555433332 33455555555555554432 4444455555555555555444 12334
Q ss_pred cccCCCCCCEEeCccc-ccccc-cCccccC-CcccEEEcccC-cCccC--CCccCCCC-CCCEEECCCC
Q 046992 136 SIGNLTNLRKLFLRHN-NLSGS-LPLSIGN-LTLSFLVLDTN-QFTSY--VPNICHSG-LLEKYTNGNN 197 (404)
Q Consensus 136 ~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~-~~L~~L~l~~n-~l~~~--~~~l~~~~-~L~~L~l~~n 197 (404)
.+..+++|++|++++| .+++. ++..+.. ++|++|++++| .+++. ...+..++ +|++|++++|
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 4444555555555555 34321 2333333 45555555555 44431 11333444 5555555555
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.6e-20 Score=165.84 Aligned_cols=129 Identities=21% Similarity=0.190 Sum_probs=77.2
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEECcC-CcCCCCCccCCCCcccccCCc
Q 046992 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNL-LSGTISPFIGNLTSLVDLQLNS-NQLIGHIPNLRQNQFRGFLPS 135 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~l~~n~~~~~~~~ 135 (404)
++++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |+++ +..+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~------------~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT------------YIDPD 99 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC------------EECTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee------------EcCHH
Confidence 67777777777765555566777777777777775 6644455667777777777776 6666 12234
Q ss_pred cccCCCCCCEEeCcccccccccCccccC-Cccc---EEEcccC-cCccCCC-ccCCCCCCC-EEECCCCccc
Q 046992 136 SIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLS---FLVLDTN-QFTSYVP-NICHSGLLE-KYTNGNNRFL 200 (404)
Q Consensus 136 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~---~L~l~~n-~l~~~~~-~l~~~~~L~-~L~l~~n~~~ 200 (404)
.|..+++|++|++++|+++ .+|. +.. ++|+ +|++++| .+..+++ .+..+++|+ .|++++|.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 5666777777777777766 3454 433 4454 6666665 5554443 344444444 4444444443
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=8.6e-20 Score=162.38 Aligned_cols=179 Identities=22% Similarity=0.181 Sum_probs=150.5
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcc
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLL 93 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 93 (404)
...++++++++.++ .+|.. +. +++++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~-------------------~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSG-------------------IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSC-------------------CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCeEEecCCCCcc-ccCCC-------------------CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 45788999999997 77766 32 5899999999999988888899999999999999999
Q ss_pred cccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcc
Q 046992 94 SGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLD 172 (404)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~ 172 (404)
++..+..|..+++|++|++++|++++ ..+..|..+++|++|++++|++++..+..+.. ++|++|+++
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLAS------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CccCHhHhccCCcCCEEECCCCcccc------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 97778889999999999999999882 33466788999999999999999555555666 899999999
Q ss_pred cCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc
Q 046992 173 TNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE 237 (404)
Q Consensus 173 ~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~ 237 (404)
+|.+.++++ .+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+.
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA-----------FDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----------TTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH-----------HhCCCCCCEEEeeCCceeCC
Confidence 999998887 6888999999999999988544433 46678899999999998754
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=6.7e-22 Score=183.77 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=121.7
Q ss_pred CcEeeCCCCcCCCCCCcccccC--Cccccccccch----hhhhcCCCCCCcEEEcCCCCCCCc-ccccccCCCCCCEEEc
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLL--THLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGS-IFLSWVTLSNFSRVYI 88 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l--~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 88 (404)
++.++++++.+. +..+..+ ++++.+.++.. .+..+..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 667777776654 3445555 66666666432 222356789999999999998755 7778889999999999
Q ss_pred cCCcccccCCccccCCCCCCEEECcCC-cCCCCCccCCCCcccccCCccccCCCCCCEEeCccc-ccccc-cCccccC-C
Q 046992 89 YDNLLSGTISPFIGNLTSLVDLQLNSN-QLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHN-NLSGS-LPLSIGN-L 164 (404)
Q Consensus 89 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~-~ 164 (404)
++|.+++..+..+..+++|++|++++| .+++. .++..+..+++|++|++++| .+++. ++..+.. +
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 999988777888888999999999999 56510 24566778999999999999 88753 4555555 7
Q ss_pred -cccEEEcccCc--Ccc--CCCccCCCCCCCEEECCCCc
Q 046992 165 -TLSFLVLDTNQ--FTS--YVPNICHSGLLEKYTNGNNR 198 (404)
Q Consensus 165 -~L~~L~l~~n~--l~~--~~~~l~~~~~L~~L~l~~n~ 198 (404)
+|++|++++|. ++. +...+..+++|+.|++++|.
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 99999999984 431 11133445566666666665
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.5e-22 Score=202.69 Aligned_cols=329 Identities=16% Similarity=0.105 Sum_probs=154.4
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccc-cCCccccccccch-------hhhhcCCCCCCcEEEcCCCCCCCccccccc----C
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIG-LLTHLKVTCTTWL-------VYFFIGQLKSLFELDLSLNQLSGSIFLSWV----T 79 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~~-------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~----~ 79 (404)
.+++|++|++++|.+++..+..+. .+++|++|.+..+ .+..+..+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666665544444444 4566666666432 223334566666666666665543332222 4
Q ss_pred CCCCCEEEccCCc--ccc-cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccc----
Q 046992 80 LSNFSRVYIYDNL--LSG-TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNN---- 152 (404)
Q Consensus 80 l~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~---- 152 (404)
+++|++|++++|. +.. .+...+..+++|++|++++|... +.++..+..+++|++|+++.+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL------------EKLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH------------HHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH------------HHHHHHHhcCCcceEcccccccCccc
Confidence 4566666666654 110 11111233466666666655211 0122333333444444322221
Q ss_pred ----------------------c----ccccCccccC-CcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCCC
Q 046992 153 ----------------------L----SGSLPLSIGN-LTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGPI 203 (404)
Q Consensus 153 ----------------------i----~~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~ 203 (404)
+ ...++..+.. ++|++|++++|.+..... .+..+++|+.|++++| +....
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~ 329 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG 329 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH
Confidence 0 0012222222 556666666665443211 2345566666666655 22111
Q ss_pred chhhhcCCCCCccccccCCCccEEeCC---------CcccCccCCcccc-ccCCccEEEEe---c----Cccc-cCCCCC
Q 046992 204 PKSLRNCISLTTAYFAFYATLTFLDLS---------HNNFYNELSSNWA-KCAKLGSLNFS---I----PMEL-GKLNSP 265 (404)
Q Consensus 204 ~~~~~~l~~L~~~~~~~~~~L~~L~l~---------~n~l~~~~~~~~~-~l~~L~~L~l~---~----p~~~-~~l~~L 265 (404)
...+ ...+++|+.|++. .+.+++.....+. .+++|+.|.+. + +..+ ..+++|
T Consensus 330 l~~l----------~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L 399 (594)
T 2p1m_B 330 LEVL----------ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399 (594)
T ss_dssp HHHH----------HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred HHHH----------HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence 1111 1235566666662 2333332222222 35666666441 1 1111 245667
Q ss_pred CEEEcC--C----CcCCCC-----CchhccCCCCCCeEeCCCCcccccccc-------cccceecCCCcCcccCchhh-c
Q 046992 266 TKLTLR--E----NQLSGH-----LPRGLNSLIQLEYLDLSANSFSQSIPE-------LCNLLNTAYNNLSSLIPKCF-E 326 (404)
Q Consensus 266 ~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~-------~~~~L~l~~n~l~~~~~~~~-~ 326 (404)
++|+++ + +.+++. ++..+..+++|++|++++ .+++..+. -.+.|++++|.+++..+..+ .
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 777776 2 344411 111244566677777755 44432111 13366667776655444444 5
Q ss_pred cCCCCCEEECCCCcCcccCC--CCcccCCCChhhhccCcC
Q 046992 327 KMHGLSGIDMSYNELEGSTP--NSAVFRDAPLAALQKNKR 364 (404)
Q Consensus 327 ~l~~L~~L~l~~N~l~~~~p--~~~~~~~l~~~~~~~n~~ 364 (404)
++++|+.|++++|++++... ....+++++.+++.+|+.
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 56677777777777643221 123356666677666654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.8e-19 Score=160.37 Aligned_cols=165 Identities=25% Similarity=0.206 Sum_probs=143.3
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFS 84 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (404)
.+|..+. +++++|++++|.+.+..+.. +.++++|++|++++|.+++..+..|..+++|+
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~-------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDAT-------------------FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTT-------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhH-------------------hcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 5666655 68999999999998766666 78899999999999999988888899999999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-
Q 046992 85 RVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN- 163 (404)
Q Consensus 85 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~- 163 (404)
+|++++|.+++..+..|..+++|++|++++|++++ ..+..|..+++|++|++++|++++..+..+..
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCC------------cChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 99999999997777888999999999999999982 23445788999999999999999655556777
Q ss_pred CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCC
Q 046992 164 LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGP 202 (404)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~ 202 (404)
++|++|++++|.+.+.++ .+..+++|+.|++++|.+...
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999998887 788899999999999998755
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.1e-19 Score=169.67 Aligned_cols=230 Identities=18% Similarity=0.127 Sum_probs=151.7
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCccc-ccccCCCCC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIF-LSWVTLSNF 83 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L 83 (404)
+||..+. +++++|+|++|+++ .+|.. .|.++++|++|+|++|.+.+.++ .+|.+++++
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~-~i~~~------------------~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLR-VIQKG------------------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCS-EECTT------------------SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred ccCcCcC--CCCCEEEccCCcCC-CcCHH------------------HHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 4554442 45666666666665 33322 27788888888888888765554 467788887
Q ss_pred CE-EEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcc-cccccccCccc
Q 046992 84 SR-VYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRH-NNLSGSLPLSI 161 (404)
Q Consensus 84 ~~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~ 161 (404)
++ +.+.+|+++...+.+|..+++|++|++++|+++. ..+..+....++..+++.+ +.+....+..+
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH------------LPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS------------CCCCTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred hhhhcccCCcccccCchhhhhcccccccccccccccc------------CCchhhcccchhhhhhhccccccccccccch
Confidence 65 5556678876667788888888888888888872 2233445566677777755 45653333444
Q ss_pred cC--CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCC
Q 046992 162 GN--LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELS 239 (404)
Q Consensus 162 ~~--~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~ 239 (404)
.. ..++.|++++|.++.+.+......+|+.+++.+++..+.+|.. .|..+++|++|++++|+++.
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~----------~f~~l~~L~~LdLs~N~l~~--- 216 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND----------VFHGASGPVILDISRTRIHS--- 216 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT----------TTTTEECCSEEECTTSCCCC---
T ss_pred hhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH----------HhccCcccchhhcCCCCcCc---
Confidence 44 4678888888888877776666777888888764444455533 25667788888888888874
Q ss_pred ccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCc
Q 046992 240 SNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANS 298 (404)
Q Consensus 240 ~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 298 (404)
+|.. .+.+|++|.+.++.--..+| .+..+++|+.+++.++.
T Consensus 217 ---------------lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 217 ---------------LPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp ---------------CCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ---------------cChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 3332 24566666665553333555 36778888888887643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.4e-19 Score=169.13 Aligned_cols=234 Identities=17% Similarity=0.133 Sum_probs=108.1
Q ss_pred EEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC-ccccC
Q 046992 61 ELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP-SSIGN 139 (404)
Q Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~-~~~~~ 139 (404)
+++.+++.++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|++.+ .++ ..|.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------------~i~~~~f~~ 77 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE------------VIEADVFSN 77 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC------------EECTTSBCS
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC------------ccChhHhhc
Confidence 3444555554 344333 2345555555555553333345555555555555555431 121 23444
Q ss_pred CCCCCE-EeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCC-cccCCCchhhhcCCCCCc
Q 046992 140 LTNLRK-LFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNN-RFLGPIPKSLRNCISLTT 215 (404)
Q Consensus 140 l~~L~~-L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~ 215 (404)
++++++ +.+..|+++...|..+.. ++|++|++++|.+...++ ......++..+++.++ .+. .++.
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~---------- 146 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIER---------- 146 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECT----------
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccc----------
Confidence 444443 333444554333444444 555555555555554443 3333344444544332 222 1211
Q ss_pred cccccC-CCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCC-CcCCCCCchhccCCCCCCeEe
Q 046992 216 AYFAFY-ATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRE-NQLSGHLPRGLNSLIQLEYLD 293 (404)
Q Consensus 216 ~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 293 (404)
..|..+ ..++.|++++|.++. ++.......+|+++++.+ |.++...+.+|..+++|++|+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~------------------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQE------------------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCE------------------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred cchhhcchhhhhhccccccccC------------------CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 111222 245566666666652 333333344556666653 444433334456666666666
Q ss_pred CCCCccccccccccc---ceecCCC-cCcccCchhhccCCCCCEEECCCCc
Q 046992 294 LSANSFSQSIPELCN---LLNTAYN-NLSSLIPKCFEKMHGLSGIDMSYNE 340 (404)
Q Consensus 294 L~~n~l~~~~~~~~~---~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 340 (404)
+++|+++..++.... .|.+.++ +++. +| .+.++++|+.+++.++.
T Consensus 209 Ls~N~l~~lp~~~~~~L~~L~~l~~~~l~~-lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKK-LP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTSCCCCCCSSSCTTCCEEECTTCTTCCC-CC-CTTTCCSCCEEECSCHH
T ss_pred cCCCCcCccChhhhccchHhhhccCCCcCc-CC-CchhCcChhhCcCCCCc
Confidence 666666543322111 2332222 2222 44 36777788888887654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.6e-19 Score=153.65 Aligned_cols=178 Identities=21% Similarity=0.134 Sum_probs=146.1
Q ss_pred CcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccc
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSG 95 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 95 (404)
-+.++.+++.++ .+|.. + .++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 9 ~~~v~c~~~~l~-~~p~~-------------------~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTG-------------------I--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66 (208)
T ss_dssp TTEEECCSSCCS-SCCSC-------------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEecCCCcc-CCCCC-------------------C--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc
Confidence 367788888776 66654 2 4689999999999997667778899999999999999986
Q ss_pred cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccC
Q 046992 96 TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTN 174 (404)
Q Consensus 96 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n 174 (404)
..+..|..+++|++|++++|++++ ..+..+..+++|++|++++|++++..+..+.. ++|++|++++|
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 67 LPNGVFNKLTSLTYLNLSTNQLQS------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cChhhcCCCCCcCEEECCCCcCCc------------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 666678899999999999999882 23445788999999999999999555555666 89999999999
Q ss_pred cCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCcccccc
Q 046992 175 QFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKC 245 (404)
Q Consensus 175 ~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 245 (404)
.+++..+ .+..+++|+.|++++|.+. ..+++|+.|+++.|.+++.+|..++.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWD------------------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBC------------------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ccceeCHHHhccCCCccEEEecCCCee------------------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 9998777 5788999999999999875 446688999999999998777665543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=8.4e-19 Score=172.71 Aligned_cols=186 Identities=26% Similarity=0.268 Sum_probs=126.8
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccc
Q 046992 58 SLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSI 137 (404)
Q Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~ 137 (404)
++++|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|+++ .+|. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-------------~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-------------TLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-------------CCCC-C
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-------------Ccch-h
Confidence 88889998888875 66555 378888888888887 566 45688888888888887 3555 4
Q ss_pred cCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccc
Q 046992 138 GNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAY 217 (404)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~ 217 (404)
.. +|++|++++|.+++ +|. ..++|+.|++++|.+++++. .+++|+.|++++|.+.+ +|. +
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l---------- 178 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-L---------- 178 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-C----------
T ss_pred hc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-h----------
Confidence 44 88888888888884 555 23778888888888877443 46678888888887764 443 2
Q ss_pred cccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCC
Q 046992 218 FAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSAN 297 (404)
Q Consensus 218 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 297 (404)
. ++|+.|++++|.++. +|. +.. +| ....+.|+.|++++|+++ .+|..+..+++|+.|+|++|
T Consensus 179 -~--~~L~~L~Ls~N~L~~-lp~-~~~--~L----------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 179 -P--ESLEALDVSTNLLES-LPA-VPV--RN----------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp -C--TTCCEEECCSSCCSS-CCC-CC--------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred -h--CCCCEEECcCCCCCc-hhh-HHH--hh----------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 1 577778888877762 222 110 00 011223377777777777 56666666777777777777
Q ss_pred ccccc
Q 046992 298 SFSQS 302 (404)
Q Consensus 298 ~l~~~ 302 (404)
.+++.
T Consensus 241 ~l~~~ 245 (571)
T 3cvr_A 241 PLSSR 245 (571)
T ss_dssp SCCHH
T ss_pred cCCCc
Confidence 77664
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.3e-18 Score=171.39 Aligned_cols=184 Identities=25% Similarity=0.305 Sum_probs=146.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccc
Q 046992 82 NFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSI 161 (404)
Q Consensus 82 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 161 (404)
+|++|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-------------~ip---~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-------------SLP---ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-------------CCC---CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-------------ccc---cccCCCCEEEccCCCCCC-cch-h
Confidence 89999999999985 666553 78999999999988 566 457899999999999985 776 5
Q ss_pred cCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCcc
Q 046992 162 GNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSN 241 (404)
Q Consensus 162 ~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 241 (404)
.. +|++|++++|.+++++. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++
T Consensus 119 ~~-~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~--------------~l~~L~~L~Ls~N~L~~----- 174 (571)
T 3cvr_A 119 PA-SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE--------------LPTSLEVLSVRNNQLTF----- 174 (571)
T ss_dssp CT-TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC--------------CCTTCCEEECCSSCCSC-----
T ss_pred hc-CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC--------------cCCCcCEEECCCCCCCC-----
Confidence 44 89999999999998554 67899999999999874 443 35789999999999874
Q ss_pred ccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCC-------CeEeCCCCccccccccccc-----c
Q 046992 242 WAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQL-------EYLDLSANSFSQSIPELCN-----L 309 (404)
Q Consensus 242 ~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~-----~ 309 (404)
+|. +. ++|++|++++|.++ .+|. +.. +| +.|+|++|.++..++.+.. .
T Consensus 175 -------------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 175 -------------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234 (571)
T ss_dssp -------------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEE
T ss_pred -------------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCE
Confidence 344 33 78999999999998 6666 544 67 9999999999864443332 8
Q ss_pred eecCCCcCcccCchhhccCCC
Q 046992 310 LNTAYNNLSSLIPKCFEKMHG 330 (404)
Q Consensus 310 L~l~~n~l~~~~~~~~~~l~~ 330 (404)
|++++|.+++.+|..+..++.
T Consensus 235 L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp EECCSSSCCHHHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHhhc
Confidence 999999999999988877654
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=3.3e-21 Score=192.94 Aligned_cols=333 Identities=12% Similarity=0.025 Sum_probs=210.8
Q ss_pred hhcCCCcCcEeeCCCCcCCC---CCCc------------ccccCCccccccccch-----hhhhcC-CCCCCcEEEcCCC
Q 046992 9 QISNLSKLEYLYLPFNQLFG---KIPP------------EIGLLTHLKVTCTTWL-----VYFFIG-QLKSLFELDLSLN 67 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~---~~p~------------~l~~l~~L~~l~l~~~-----~~~~l~-~l~~L~~L~Ls~n 67 (404)
.+.++++|++|+++++.... ..|. ....+++|++|++++. .+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45678999999999986321 1121 1235678888877642 333343 5788888888888
Q ss_pred -CCCCc-ccccccCCCCCCEEEccCCcccccCCccc----cCCCCCCEEECcCCc--CCCCCccCCCCcccccCCccccC
Q 046992 68 -QLSGS-IFLSWVTLSNFSRVYIYDNLLSGTISPFI----GNLTSLVDLQLNSNQ--LIGHIPNLRQNQFRGFLPSSIGN 139 (404)
Q Consensus 68 -~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--l~~~~~~l~~n~~~~~~~~~~~~ 139 (404)
.++.. ++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +.. ..++..+..
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----------~~l~~l~~~ 209 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF-----------SALERLVTR 209 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH-----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH-----------HHHHHHHHh
Confidence 44432 33444578888888888888764443333 356788888888876 210 012222345
Q ss_pred CCCCCEEeCcccccccccCccccC-CcccEEEcccCcC--------------------------ccCC----C-ccCCCC
Q 046992 140 LTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQF--------------------------TSYV----P-NICHSG 187 (404)
Q Consensus 140 l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l--------------------------~~~~----~-~l~~~~ 187 (404)
+++|++|++++|...+.++..+.. ++|++|+++.+.. .... + .+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 688888888888322235555555 7788887654421 0000 0 112456
Q ss_pred CCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc-CCccccccCCccEEEEec-----------
Q 046992 188 LLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE-LSSNWAKCAKLGSLNFSI----------- 255 (404)
Q Consensus 188 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~----------- 255 (404)
+|++|++++|.+.+..... .+..+++|+.|++++| +++. ++.....+++|+.|++.-
T Consensus 290 ~L~~L~L~~~~l~~~~l~~----------~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVK----------LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp TCCEEECTTCCCCHHHHHH----------HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred CCCEEEccCCCCCHHHHHH----------HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 7777777777644222111 1356788899999887 4332 222334578899987721
Q ss_pred -Cc-----cccCCCCCCEEEcCCCcCCCCCchhcc-CCCCCCeEeCC--C----Cccccc-----ccc------ccccee
Q 046992 256 -PM-----ELGKLNSPTKLTLRENQLSGHLPRGLN-SLIQLEYLDLS--A----NSFSQS-----IPE------LCNLLN 311 (404)
Q Consensus 256 -p~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~------~~~~L~ 311 (404)
.. ....+++|++|.+..|.+++.....+. .+++|++|+++ + +.+++. ++. -.+.|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 10 112478999999998999865555554 58999999999 4 556521 111 234899
Q ss_pred cCCCcCcccCchhhcc-CCCCCEEECCCCcCcccCC-CC-cccCCCChhhhccCcC
Q 046992 312 TAYNNLSSLIPKCFEK-MHGLSGIDMSYNELEGSTP-NS-AVFRDAPLAALQKNKR 364 (404)
Q Consensus 312 l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~p-~~-~~~~~l~~~~~~~n~~ 364 (404)
+++ .++...+..+.. +++|+.|++++|.+++... .. ..+++++.+++.+|+.
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 987 777766666665 8999999999999865322 11 3479999999999986
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=8e-19 Score=151.47 Aligned_cols=168 Identities=23% Similarity=0.249 Sum_probs=139.6
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFS 84 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (404)
.+|..+ .++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..|..+++|+
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGV-------------------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTT-------------------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhh-------------------hcccccCcEEECCCCccCccChhhcCCCCCcC
Confidence 455444 468999999999998544444 78899999999999999976667788999999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-
Q 046992 85 RVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN- 163 (404)
Q Consensus 85 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~- 163 (404)
+|++++|.+++..+..|..+++|++|++++|++++ ..+..+..+++|++|++++|++++..+..+..
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc------------cCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 99999999986666678999999999999999982 33445788999999999999999555555676
Q ss_pred CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 164 LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
++|+.|++++|.+. ..++.|+.|+++.|.+.+.+|.+++.+.
T Consensus 148 ~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 148 TSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 89999999999765 3567899999999999999998876553
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=157.52 Aligned_cols=172 Identities=20% Similarity=0.293 Sum_probs=126.5
Q ss_pred hcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEcc
Q 046992 10 ISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIY 89 (404)
Q Consensus 10 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 89 (404)
++.+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~--------------------~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG--------------------IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--------------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred hhhcCcccEEEccCCCcc-cChh--------------------HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 345666777777777665 3332 6677888888888888875444 7788888888888
Q ss_pred CCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccE
Q 046992 90 DNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSF 168 (404)
Q Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~ 168 (404)
+|.+++ + ..+..+++|++|++++|+++ .+ ..+..+++|+.|++++|++++ + ..+.. ++|+.
T Consensus 99 ~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-------------~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 160 (291)
T 1h6t_A 99 ENKVKD-L-SSLKDLKKLKSLSLEHNGIS-------------DI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDT 160 (291)
T ss_dssp SSCCCC-G-GGGTTCTTCCEEECTTSCCC-------------CC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred CCcCCC-C-hhhccCCCCCEEECCCCcCC-------------CC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCE
Confidence 888863 3 34788888888888888887 33 457778888888888888874 3 44555 78888
Q ss_pred EEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCc
Q 046992 169 LVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYN 236 (404)
Q Consensus 169 L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~ 236 (404)
|++++|.+.+..+ +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+..
T Consensus 161 L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~~------------l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA------------LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG------------GTTCTTCSEEEEEEEEEEC
T ss_pred EEccCCccccchh-hcCCCccCEEECCCCcCCC-Chh------------hccCCCCCEEECcCCcccC
Confidence 8888888887655 7778888888888888763 221 4567788888888888764
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=7.2e-19 Score=159.86 Aligned_cols=173 Identities=25% Similarity=0.331 Sum_probs=101.3
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|++++|.++.. + .+..+++|++|++++|.+++.. . +..+++|++|++++|+++ .
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-------------~ 104 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVK-------------D 104 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-------------C
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCC-------------C
Confidence 33456666677766666532 2 3566666666666666665332 2 666666666666666665 2
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCIS 212 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 212 (404)
++ .+..+++|++|++++|++++ + +.+..+++|+.|++++|.+.+. .
T Consensus 105 ~~-~l~~l~~L~~L~L~~n~i~~-~-----------------------~~l~~l~~L~~L~l~~n~l~~~--~------- 150 (291)
T 1h6t_A 105 LS-SLKDLKKLKSLSLEHNGISD-I-----------------------NGLVHLPQLESLYLGNNKITDI--T------- 150 (291)
T ss_dssp GG-GGTTCTTCCEEECTTSCCCC-C-----------------------GGGGGCTTCCEEECCSSCCCCC--G-------
T ss_pred Ch-hhccCCCCCEEECCCCcCCC-C-----------------------hhhcCCCCCCEEEccCCcCCcc--h-------
Confidence 22 35566666666666666652 2 2233445555555555554422 1
Q ss_pred CCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeE
Q 046992 213 LTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYL 292 (404)
Q Consensus 213 L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 292 (404)
.+..+++|+.|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus 151 ----~l~~l~~L~~L~L~~N~l~~~------------------~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L 205 (291)
T 1h6t_A 151 ----VLSRLTKLDTLSLEDNQISDI------------------VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVL 205 (291)
T ss_dssp ----GGGGCTTCSEEECCSSCCCCC------------------GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEE
T ss_pred ----hhccCCCCCEEEccCCccccc------------------hh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 134556677777777766532 22 4456677777777777763 33 36677777777
Q ss_pred eCCCCcccc
Q 046992 293 DLSANSFSQ 301 (404)
Q Consensus 293 ~L~~n~l~~ 301 (404)
++++|.++.
T Consensus 206 ~l~~n~i~~ 214 (291)
T 1h6t_A 206 ELFSQECLN 214 (291)
T ss_dssp EEEEEEEEC
T ss_pred ECcCCcccC
Confidence 777777664
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=6.8e-18 Score=167.93 Aligned_cols=153 Identities=22% Similarity=0.285 Sum_probs=121.5
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|+|++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+|++|++. .
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-------------~ 123 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-------------D 123 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-------------C
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-------------C
Confidence 7778889999999999885544 8889999999999998873 33 6888899999999999887 3
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
+ ..+..+++|+.|++++|.+++. ..+.. ++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. +
T Consensus 124 l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~------- 191 (605)
T 1m9s_A 124 I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R------- 191 (605)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-------
T ss_pred C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-h-------
Confidence 3 4577888999999999988843 45555 889999999998888766 77888899999999987642 2
Q ss_pred CCCccccccCCCccEEeCCCcccCccCC
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFYNELS 239 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~~~~~ 239 (404)
.+..+++|+.|++++|.+.+...
T Consensus 192 -----~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 192 -----ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -----GGTTCTTCSEEECCSEEEECCCC
T ss_pred -----HHccCCCCCEEEccCCcCcCCcc
Confidence 14667888999999998876543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4.9e-18 Score=168.98 Aligned_cols=173 Identities=23% Similarity=0.275 Sum_probs=127.7
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|+|++|.+. .
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------~ 101 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-------------D 101 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-------------C
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-------------C
Confidence 4567788888999988873 33 57889999999999998875433 788899999999999887 3
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
++ .+..+++|+.|++++|.+.+ ++ .+.. ++|+.|++++|.+.++ +.+..+++|+.|++++|.+.+..|
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~------- 170 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP------- 170 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-------
T ss_pred Ch-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-------
Confidence 33 67888899999999998873 33 3445 7888888888888775 566777788888888887764433
Q ss_pred CCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCC
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGH 278 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~ 278 (404)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 171 ------l~~l~~L~~L~Ls~N~i~~l-------------------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 ------LAGLTKLQNLYLSKNHISDL-------------------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ------GTTCTTCCEEECCSSCCCBC-------------------GGGTTCTTCSEEECCSEEEECC
T ss_pred ------hccCCCCCEEECcCCCCCCC-------------------hHHccCCCCCEEEccCCcCcCC
Confidence 35567778888888877632 2345567777777777777643
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.8e-17 Score=142.15 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=108.2
Q ss_pred cEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccccc
Q 046992 17 EYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGT 96 (404)
Q Consensus 17 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 96 (404)
+.++++++.++ .+|.. + .+++++|++++|.|++..+..|..+++|++|++++|.+++.
T Consensus 14 ~~v~c~~~~l~-~iP~~-------------------l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTN-------------------L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp TEEECTTSCCS-SCCSS-------------------C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred CEEEcCCCCcC-cCCCc-------------------c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 56777777776 66655 2 25778888888888766666788888888888888888766
Q ss_pred CCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc-cccCCCCCCEEeCcccccccccCccccC-CcccEEEcccC
Q 046992 97 ISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS-SIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTN 174 (404)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n 174 (404)
.|..|..+++|++|++++|+++ .+|. .|..+++|++|++++|++++..+..+.. ++|++|++++|
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~-------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKIT-------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CHHHhhCCcCCCEEECCCCcCC-------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 6778888888888888888877 3333 3567888888888888887665666666 77777777777
Q ss_pred cCccCCC-ccCCCCCCCEEECCCCccc
Q 046992 175 QFTSYVP-NICHSGLLEKYTNGNNRFL 200 (404)
Q Consensus 175 ~l~~~~~-~l~~~~~L~~L~l~~n~~~ 200 (404)
.++.+.+ .+..+++|+.|++++|.+.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776655 4555666666666666654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=7.1e-18 Score=158.15 Aligned_cols=177 Identities=24% Similarity=0.176 Sum_probs=112.3
Q ss_pred CCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCcccc-C-CcccEEEcccCcCccCCC-cc
Q 046992 107 LVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIG-N-LTLSFLVLDTNQFTSYVP-NI 183 (404)
Q Consensus 107 L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~-~~L~~L~l~~n~l~~~~~-~l 183 (404)
-+++++++++++ .+|..+. +.++.|++++|++++..+..+. . ++|++|++++|.+..+.+ .+
T Consensus 20 ~~~l~c~~~~l~-------------~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 20 SNILSCSKQQLP-------------NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TTEEECCSSCCS-------------SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEEEeCCCCcC-------------ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 367777777777 4565443 4577788888888755555554 4 777777777777777665 56
Q ss_pred CCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCC
Q 046992 184 CHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLN 263 (404)
Q Consensus 184 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~ 263 (404)
..+++|+.|++++|.+....+.. |..+++|+.|++++|.+++.. +..+..++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~i~~~~-----------------~~~~~~l~ 136 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFL-----------FSDLQALEVLLLYNNHIVVVD-----------------RNAFEDMA 136 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTT-----------TTTCTTCCEEECCSSCCCEEC-----------------TTTTTTCT
T ss_pred cCCCCCCEEECCCCcCCcCCHHH-----------hCCCcCCCEEECCCCcccEEC-----------------HHHhCCcc
Confidence 67777777777777765332222 355566777777777765422 34455666
Q ss_pred CCCEEEcCCCcCCCCCchhc---cCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCC--CCEEECCC
Q 046992 264 SPTKLTLRENQLSGHLPRGL---NSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHG--LSGIDMSY 338 (404)
Q Consensus 264 ~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~ 338 (404)
+|++|+|++|++++..+..+ ..+++|+.|+|++|.+++ +.+..|..++. ++.|++++
T Consensus 137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK------------------LPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC------------------CCHHHHHHSCHHHHTTEECCS
T ss_pred cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc------------------cCHHHhhhccHhhcceEEecC
Confidence 77777777777764333333 456777777777766654 23345666665 37788888
Q ss_pred CcCccc
Q 046992 339 NELEGS 344 (404)
Q Consensus 339 N~l~~~ 344 (404)
|++.+.
T Consensus 199 N~~~C~ 204 (361)
T 2xot_A 199 NPLECD 204 (361)
T ss_dssp SCEECC
T ss_pred CCccCC
Confidence 887643
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=4.4e-17 Score=141.72 Aligned_cols=154 Identities=20% Similarity=0.158 Sum_probs=120.6
Q ss_pred CcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCccc-ccccCCCCCCEEEccCCccc
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIF-LSWVTLSNFSRVYIYDNLLS 94 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~ 94 (404)
-++++++++.++ .+|.. + .+.+++|++++|.+++..+ ..|..+++|++|++++|.++
T Consensus 13 ~~~l~~s~n~l~-~iP~~-------------------~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~ 70 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEH-------------------I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70 (220)
T ss_dssp TTEEECCSSCCS-SCCSC-------------------C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC
T ss_pred CCEeEeCCCCcc-cCccC-------------------C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC
Confidence 468899999887 67765 2 2346789999999886544 45788999999999999988
Q ss_pred ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEccc
Q 046992 95 GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDT 173 (404)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~ 173 (404)
+..+.+|..+++|++|++++|++++ ..+..|..+++|++|++++|++++..|..+.. ++|++|++++
T Consensus 71 ~i~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 71 DIEEGAFEGASGVNEILLTSNRLEN------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCC------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred EECHHHhCCCCCCCEEECCCCccCc------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 7777788889999999999998872 33456788899999999999988666777777 7888888888
Q ss_pred CcCccCCC-ccCCCCCCCEEECCCCcccCCC
Q 046992 174 NQFTSYVP-NICHSGLLEKYTNGNNRFLGPI 203 (404)
Q Consensus 174 n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~ 203 (404)
|.+++..+ .+..+++|+.|++++|.+....
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88887755 6777777888888877776443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=8.9e-18 Score=143.58 Aligned_cols=152 Identities=15% Similarity=0.076 Sum_probs=86.3
Q ss_pred CCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccC
Q 046992 54 GQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFL 133 (404)
Q Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~ 133 (404)
..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|+++ +..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~------------~~~ 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVT------------SDK 104 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCB------------GGG
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccC------------ccc
Confidence 34555666666666665 333 4556666666666666543 2235556666666666666655 223
Q ss_pred CccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCc-CccCCCccCCCCCCCEEECCCCcccCCCchhhhcCC
Q 046992 134 PSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQ-FTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCI 211 (404)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 211 (404)
+..+..+++|++|++++|.+++..+..+.. ++|++|++++|. +... +.+..+++|+.|++++|.+.+ ++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~------- 175 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR------- 175 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-------
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-------
Confidence 455556666666666666666544555555 666666666665 4443 345566667777776666653 21
Q ss_pred CCCccccccCCCccEEeCCCcccC
Q 046992 212 SLTTAYFAFYATLTFLDLSHNNFY 235 (404)
Q Consensus 212 ~L~~~~~~~~~~L~~L~l~~n~l~ 235 (404)
.+..+++|+.|++++|++.
T Consensus 176 -----~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -----GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -----TGGGCSSCCEEEECBC---
T ss_pred -----HhccCCCCCEEEeeCcccC
Confidence 1355667777777777664
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=8.7e-17 Score=140.79 Aligned_cols=154 Identities=24% Similarity=0.206 Sum_probs=121.7
Q ss_pred cCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccc
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLS 94 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 94 (404)
..+.++.+++.+. .+|.. + .++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 20 s~~~v~c~~~~l~-~ip~~-------------------~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 77 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAG-------------------I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77 (229)
T ss_dssp ETTEEECTTSCCS-SCCSC-------------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCEeEccCCCcC-ccCCC-------------------C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC
Confidence 3567888888876 77765 2 378889999999998777888888999999999999987
Q ss_pred ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEccc
Q 046992 95 GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDT 173 (404)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~ 173 (404)
...+..|..+++|++|++++|++++ ..+..|..+++|++|++++|+++ .+|..+.. ++|++|++++
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 78 ALPVGVFDSLTQLTVLDLGTNQLTV------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcChhhcccCCCcCEEECCCCcCCc------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 5555677888999999999998872 23445678889999999999988 77777766 8888888888
Q ss_pred CcCccCCC-ccCCCCCCCEEECCCCcccCCC
Q 046992 174 NQFTSYVP-NICHSGLLEKYTNGNNRFLGPI 203 (404)
Q Consensus 174 n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~ 203 (404)
|.+..+.+ .+..+++|+.|++++|.+....
T Consensus 145 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88887766 5677788888888888776443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.9e-17 Score=142.98 Aligned_cols=141 Identities=26% Similarity=0.260 Sum_probs=118.8
Q ss_pred cCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046992 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNF 83 (404)
Q Consensus 4 g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (404)
+.+|..+. ++|++|++++|.+++..|.. |..+++|++|++++|.++...+..|..+++|
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGV-------------------FDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTT-------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHH-------------------hhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 46776554 89999999999999776776 7788899999999999986666678899999
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC
Q 046992 84 SRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN 163 (404)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 163 (404)
++|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-------------ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 99999999998666677888999999999999988 67888889999999999999998554555666
Q ss_pred -CcccEEEcccCcCcc
Q 046992 164 -LTLSFLVLDTNQFTS 178 (404)
Q Consensus 164 -~~L~~L~l~~n~l~~ 178 (404)
++|+.|++++|.+..
T Consensus 158 l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECTTSCBCT
T ss_pred CCCCCEEEeeCCCccC
Confidence 889999999998764
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=4.3e-17 Score=152.83 Aligned_cols=176 Identities=22% Similarity=0.114 Sum_probs=144.0
Q ss_pred CcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCccccccc-CCCCCCEEEccCCccc
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWV-TLSNFSRVYIYDNLLS 94 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~ 94 (404)
-++++++++.++ .+|.. + .+.+++|+|++|.|++..+..|. .+++|++|++++|.++
T Consensus 20 ~~~l~c~~~~l~-~iP~~-------------------~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQS-------------------L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TTEEECCSSCCS-SCCSS-------------------C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC
T ss_pred CCEEEeCCCCcC-ccCcc-------------------C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC
Confidence 468899999987 67765 2 34588999999999977777777 8999999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEccc
Q 046992 95 GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDT 173 (404)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~ 173 (404)
+..+..|..+++|++|++++|+++ ...+..|..+++|++|++++|+++...+..+.. ++|+.|++++
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FISSEAFVPVPNLRYLDLSSNHLH------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccChhhccCCCCCCEEECCCCcCC------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 777788999999999999999988 233556889999999999999999777788888 9999999999
Q ss_pred CcCccCCCcc----CCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCC--ccEEeCCCcccCc
Q 046992 174 NQFTSYVPNI----CHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYAT--LTFLDLSHNNFYN 236 (404)
Q Consensus 174 n~l~~~~~~l----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~--L~~L~l~~n~l~~ 236 (404)
|.+..++..+ ..+++|+.|++++|.+....+..+ ..++. ++.|++++|.+..
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-----------~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL-----------QKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH-----------HHSCHHHHTTEECCSSCEEC
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh-----------hhccHhhcceEEecCCCccC
Confidence 9999877643 568999999999999885444444 44454 4789999998764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.3e-18 Score=151.25 Aligned_cols=170 Identities=24% Similarity=0.324 Sum_probs=108.2
Q ss_pred CCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC
Q 046992 55 QLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP 134 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~ 134 (404)
.+.+++.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .++
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-------------~~~ 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-------------DLS 79 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-------------CCG
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-------------CCh
Confidence 45567777888888873 33 5777888888888888887 444 6778888888888888887 344
Q ss_pred ccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCC
Q 046992 135 SSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT 214 (404)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 214 (404)
. +..+++|++|++++|++++ ++.... ++|+.|++++|.+++. +.+
T Consensus 80 ~-l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~-~~l------------------------------- 124 (263)
T 1xeu_A 80 P-LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDT-DSL------------------------------- 124 (263)
T ss_dssp G-GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSCCSBS-GGG-------------------------------
T ss_pred h-hccCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCccCCC-hhh-------------------------------
Confidence 4 7788888888888888873 333222 5555555555555442 123
Q ss_pred ccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeC
Q 046992 215 TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDL 294 (404)
Q Consensus 215 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 294 (404)
..+++|+.|++++|++++ ++ .+..+++|++|++++|++++. ..+..+++|+.|++
T Consensus 125 ----~~l~~L~~L~Ls~N~i~~------------------~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 125 ----IHLKNLEILSIRNNKLKS------------------IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp ----TTCTTCCEEECTTSCCCB------------------CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred ----cCcccccEEECCCCcCCC------------------Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 344555555555555542 11 234455666666666666533 44556666666666
Q ss_pred CCCcccc
Q 046992 295 SANSFSQ 301 (404)
Q Consensus 295 ~~n~l~~ 301 (404)
++|.+++
T Consensus 180 ~~N~~~~ 186 (263)
T 1xeu_A 180 TGQKCVN 186 (263)
T ss_dssp EEEEEEC
T ss_pred CCCcccC
Confidence 6666654
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4.9e-17 Score=141.46 Aligned_cols=141 Identities=23% Similarity=0.235 Sum_probs=117.6
Q ss_pred CCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCC
Q 046992 5 IISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFS 84 (404)
Q Consensus 5 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (404)
.+|..+. +++++|++++|.+++..+.. |..+++|++|++++|.+++..|..|..+++|+
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~-------------------~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGA-------------------FSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTS-------------------STTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhH-------------------hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 5666554 68999999999998555555 78888999999999999877788899999999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-
Q 046992 85 RVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN- 163 (404)
Q Consensus 85 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~- 163 (404)
+|++++|.++...+..|..+++|++|++++|++++ ..+..|..+++|++|++++|++++..+..+..
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE------------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 99999999986656667889999999999999882 44677888999999999999998666666776
Q ss_pred CcccEEEcccCcCcc
Q 046992 164 LTLSFLVLDTNQFTS 178 (404)
Q Consensus 164 ~~L~~L~l~~n~l~~ 178 (404)
++|+.|++++|.+..
T Consensus 152 ~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 152 RAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred CCCCEEEeCCCCcCC
Confidence 889999999998754
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.4e-20 Score=183.42 Aligned_cols=210 Identities=19% Similarity=0.172 Sum_probs=143.7
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCcc-CCCCcccccCCccccCCCCCCEEe-Cccccccc
Q 046992 78 VTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPN-LRQNQFRGFLPSSIGNLTNLRKLF-LRHNNLSG 155 (404)
Q Consensus 78 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-l~~n~~~~~~~~~~~~l~~L~~L~-l~~n~i~~ 155 (404)
..++.|+.|++++|.++ .+|..++.+++|+.|++++|.....+|. +..+...+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34666666666666665 5666666666666666655431000000 001112234566667777777777 5555443
Q ss_pred ccCc---------cccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccE
Q 046992 156 SLPL---------SIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTF 226 (404)
Q Consensus 156 ~~~~---------~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~ 226 (404)
.++. .+....|+.|++++|.+++++. +..+++|+.|++++|.+. .+|..+ ..+++|+.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-----------~~l~~L~~ 490 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPAL-----------AALRCLEV 490 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGG-----------GGCTTCCE
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhh-----------hcCCCCCE
Confidence 1111 0111458899999999988654 888899999999999987 667654 56778999
Q ss_pred EeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCC-chhccCCCCCCeEeCCCCcccccccc
Q 046992 227 LDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHL-PRGLNSLIQLEYLDLSANSFSQSIPE 305 (404)
Q Consensus 227 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~ 305 (404)
|++++|.+++ +| .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|.+++.+|.
T Consensus 491 L~Ls~N~l~~------------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 491 LQASDNALEN------------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp EECCSSCCCC------------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred EECCCCCCCC------------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999874 34 5677889999999999999665 88999999999999999999875443
Q ss_pred cccceecCCCcCcccCchhhccCCCCCEEEC
Q 046992 306 LCNLLNTAYNNLSSLIPKCFEKMHGLSGIDM 336 (404)
Q Consensus 306 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 336 (404)
....+..+++|+.|++
T Consensus 552 ---------------~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 ---------------QERLAEMLPSVSSILT 567 (567)
T ss_dssp ---------------TTHHHHHCTTCSEEEC
T ss_pred ---------------HHHHHHHCcccCccCC
Confidence 3334566888998874
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=140.95 Aligned_cols=143 Identities=23% Similarity=0.212 Sum_probs=117.7
Q ss_pred cCCChhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046992 4 GIISPQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNF 83 (404)
Q Consensus 4 g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (404)
+.+|..+. ..+++|++++|.+++..|... |..+++|++|++++|.+++..+..|..+++|
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~------------------~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGI------------------FKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCC------------------GGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhh------------------hccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 35777664 457899999999986655432 6778889999999999987777788899999
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC
Q 046992 84 SRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN 163 (404)
Q Consensus 84 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 163 (404)
++|++++|.+++..+..|..+++|++|++++|+++ +..|..|..+++|++|++++|++++..|..+..
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT------------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC------------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC------------eECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 99999999998777777888999999999999888 244677888999999999999998766778877
Q ss_pred -CcccEEEcccCcCcc
Q 046992 164 -LTLSFLVLDTNQFTS 178 (404)
Q Consensus 164 -~~L~~L~l~~n~l~~ 178 (404)
++|+.|++++|.+..
T Consensus 152 l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 152 LHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTCCEEECCSCCEEC
T ss_pred CCCCCEEEecCcCCcC
Confidence 889999999998764
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=8.8e-17 Score=137.38 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=58.2
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ +.
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~------------~~ 127 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD------------DS 127 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB------------GG
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC------------cH
Confidence 444445555555555433 1123444455555555555544334444444555555555555444 12
Q ss_pred CCccccCCCCCCEEeCcccc-cccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcc
Q 046992 133 LPSSIGNLTNLRKLFLRHNN-LSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRF 199 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~ 199 (404)
.+..+..+++|++|++++|+ ++ .++ .+.. ++|+.|++++|.+.+.. .+..+++|+.|++++|++
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred hHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 33444444555555555554 33 233 2333 44555555555444422 344444455555555443
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.4e-16 Score=140.98 Aligned_cols=170 Identities=21% Similarity=0.247 Sum_probs=121.0
Q ss_pred CCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCC
Q 046992 12 NLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDN 91 (404)
Q Consensus 12 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 91 (404)
.+.+++.++++.+.++ .++ . +..+++|++|++++|.++ .++ .+..+++|++|++++|
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~-------------------~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N 73 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-S-------------------QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHN 73 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-C-------------------HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSS
T ss_pred HHHHHHHHHhcCCCcc-ccc-c-------------------hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCC
Confidence 4567778888888876 333 3 556777888888888876 344 5777888888888888
Q ss_pred cccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEE
Q 046992 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLV 170 (404)
Q Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~ 170 (404)
.+++. +. +..+++|++|++++|+++ .++.. .. ++|++|++++|++++ ++ .+.. ++|+.|+
T Consensus 74 ~i~~~-~~-l~~l~~L~~L~L~~N~l~-------------~l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 74 QISDL-SP-LKDLTKLEELSVNRNRLK-------------NLNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp CCCCC-GG-GTTCSSCCEEECCSSCCS-------------CCTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred ccCCC-hh-hccCCCCCEEECCCCccC-------------CcCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 88743 33 777888888888888877 33332 22 778888888888873 33 3555 7788888
Q ss_pred cccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCcc
Q 046992 171 LDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNE 237 (404)
Q Consensus 171 l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~ 237 (404)
+++|.+++. +.+..+++|+.|++++|.+.+. . .+..+++|+.|++++|.+.+.
T Consensus 135 Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~-----------~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 135 IRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--G-----------GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--T-----------TSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCCCC-hHHccCCCCCEEECCCCcCcch--H-----------HhccCCCCCEEeCCCCcccCC
Confidence 888888775 3567778888888888887643 1 146677888888888887655
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3.7e-16 Score=132.88 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=61.1
Q ss_pred ccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCc
Q 046992 219 AFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANS 298 (404)
Q Consensus 219 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 298 (404)
..+++|++|++++|.+++.. |..+..+++|++|++++|++++..+..+..+++|++|+|++|.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIE-----------------PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBC-----------------TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEECCCCCCCCcC-----------------HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 44455555555555555322 3334445555666666666655555555566666666666655
Q ss_pred ccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCCCcccCCCChhhhccCcCCCCCCC
Q 046992 299 FSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPNSAVFRDAPLAALQKNKRLCSNVK 370 (404)
Q Consensus 299 l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 370 (404)
+++. .|..|..+++|++|++++|++++..+......-++...+.++...|+.|.
T Consensus 114 l~~~------------------~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 114 ISCV------------------MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCEE------------------CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCee------------------CHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 5542 44556666666666666666665444322111222233344445555544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.4e-18 Score=170.13 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=93.2
Q ss_pred cCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch------------------hhhhcCCCCCCcEEE-cCCCCCCC
Q 046992 11 SNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL------------------VYFFIGQLKSLFELD-LSLNQLSG 71 (404)
Q Consensus 11 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~------------------~~~~l~~l~~L~~L~-Ls~n~i~~ 71 (404)
..+++|+.|++++|.++ .+|..++.|++|+.|++... .|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56889999999999997 88999999998888876432 334455555555555 3443321
Q ss_pred cccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccc
Q 046992 72 SIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHN 151 (404)
Q Consensus 72 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (404)
.+ +.+.+.+|.++. ++ ...|++|++++|+++ .+|. +..+++|+.|++++|
T Consensus 424 ~L----------~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~-------------~lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 424 DL----------RSKFLLENSVLK-ME-----YADVRVLHLAHKDLT-------------VLCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HH----------HHHHHHHHHHHH-HH-----HTTCSEEECTTSCCS-------------SCCC-GGGGTTCCEEECCSS
T ss_pred hh----------hhhhhhcccccc-cC-----ccCceEEEecCCCCC-------------CCcC-ccccccCcEeecCcc
Confidence 00 011111111110 00 012444444444444 2333 444444555555555
Q ss_pred ccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCC-chhhhcCCCCCccccccCCCccEEeC
Q 046992 152 NLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPI-PKSLRNCISLTTAYFAFYATLTFLDL 229 (404)
Q Consensus 152 ~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~~~~~~~~~L~~L~l 229 (404)
.++ .+|..+.. ++|+.|++++|.+++++ .+..+++|+.|++++|.+.+.. |..+ ..+++|+.|++
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l-----------~~l~~L~~L~L 540 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPL-----------VSCPRLVLLNL 540 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGG-----------GGCTTCCEEEC
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHH-----------hcCCCCCEEEe
Confidence 444 44444444 44555555555444432 4444555555555555554333 3333 33445555555
Q ss_pred CCcccCcc
Q 046992 230 SHNNFYNE 237 (404)
Q Consensus 230 ~~n~l~~~ 237 (404)
++|.+++.
T Consensus 541 ~~N~l~~~ 548 (567)
T 1dce_A 541 QGNSLCQE 548 (567)
T ss_dssp TTSGGGGS
T ss_pred cCCcCCCC
Confidence 55555544
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.4e-17 Score=167.90 Aligned_cols=218 Identities=19% Similarity=0.148 Sum_probs=75.2
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEE-----ccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVY-----IYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-----l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
+.++.|++.+|.+.. .+..+.....|+.+. +..|.+. ..+..+..++.|++|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~------------- 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF------------- 237 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-------------
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-------------
Confidence 456677777776653 232222222222222 2223332 34555666667777777777666
Q ss_pred cCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcC
Q 046992 132 FLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNC 210 (404)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l 210 (404)
.+|..+..+++|++|+|++|.++ .+|..+.. ++|++|+|++|.++.++..+..+++|++|++++|.+. .
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~-------- 307 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-T-------- 307 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-C--------
T ss_pred CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-c--------
Confidence 45555666666777777776666 55655555 5566666666655543334444444444444444443 2
Q ss_pred CCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCC-CC
Q 046992 211 ISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLI-QL 289 (404)
Q Consensus 211 ~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L 289 (404)
+|..+..+++|++|+|++|.+++.+|..+..+. .+
T Consensus 308 --------------------------------------------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 343 (727)
T 4b8c_D 308 --------------------------------------------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG 343 (727)
T ss_dssp --------------------------------------------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH
T ss_pred --------------------------------------------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh
Confidence 333344444555555555555544444433221 11
Q ss_pred CeEeCCCCcccccccccccceecCCC--------cCcccCchhhccCCCCCEEECCCCcCcc
Q 046992 290 EYLDLSANSFSQSIPELCNLLNTAYN--------NLSSLIPKCFEKMHGLSGIDMSYNELEG 343 (404)
Q Consensus 290 ~~L~L~~n~l~~~~~~~~~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 343 (404)
..++|++|.+++.+|.....+++++| .+.+..+..+..+..+....+++|.+.+
T Consensus 344 ~~l~l~~N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 344 LIFYLRDNRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHHHHHHCCCCCCCCCC-----------------------------------------CCCG
T ss_pred hHHhhccCcccCcCccccceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 12445555555555544444444444 4444455556667777778888888753
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=4e-17 Score=166.28 Aligned_cols=164 Identities=24% Similarity=0.141 Sum_probs=75.5
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcc
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLL 93 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 93 (404)
++++.|+|..+.+. ..+..+.....|+.+. +..++++.|.+. ..+..+..++.|++|++++|.+
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~~l~Ls~~~--------------i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l 236 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQHKKLSQYS--------------IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI 236 (727)
T ss_dssp -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred CccceEEeeCCCCC-cchhhHhhcCccCccc--------------ccCcccccccee-cChhhhccCCCCcEEECCCCCC
Confidence 56788888888876 4555543333333222 222333334433 3455566666666666666666
Q ss_pred cccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcc
Q 046992 94 SGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLD 172 (404)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~ 172 (404)
. .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|+++ .+|..+.. ++|++|+|+
T Consensus 237 ~-~l~~~~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 237 F-NISANIFKYDFLTRLYLNGNSLT-------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp S-CCCGGGGGCCSCSCCBCTTSCCS-------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred C-CCChhhcCCCCCCEEEeeCCcCc-------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 5 55555556666666666666666 45666666666666666666666 55666666 666666776
Q ss_pred cCcCccCCCccCCCCCCCEEECCCCcccCCCchhhh
Q 046992 173 TNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLR 208 (404)
Q Consensus 173 ~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 208 (404)
+|.++.++..+..+++|+.|++++|.+.+.+|..+.
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 666665544666677777777777777666665553
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.4e-16 Score=129.39 Aligned_cols=133 Identities=18% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCcCcEeeCCCCcCC-CCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCC
Q 046992 13 LSKLEYLYLPFNQLF-GKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDN 91 (404)
Q Consensus 13 l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 91 (404)
.++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-------------------TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-------------------CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC
T ss_pred cccCCEEECCCCCCChhhHHHH-------------------HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC
Confidence 467888888888776 566665 55566677777777776644 55666777777777777
Q ss_pred cccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCC--ccccCCCCCCEEeCcccccccccC---ccccC-Cc
Q 046992 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLP--SSIGNLTNLRKLFLRHNNLSGSLP---LSIGN-LT 165 (404)
Q Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~-~~ 165 (404)
.+++.+|..+..+++|++|++++|.++ .++ ..+..+++|++|++++|.+++..+ ..+.. ++
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLK-------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCC-------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccC-------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 776556666666777777777777766 232 456667777777777777663222 24444 66
Q ss_pred ccEEEcccCcCccC
Q 046992 166 LSFLVLDTNQFTSY 179 (404)
Q Consensus 166 L~~L~l~~n~l~~~ 179 (404)
|++|++++|.+...
T Consensus 149 L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 149 LTYLDGYDREDQEA 162 (168)
T ss_dssp CCEETTEETTSCBC
T ss_pred CcEecCCCCChhhc
Confidence 66666666665543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=9.4e-16 Score=124.72 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=85.6
Q ss_pred CCcCcEeeCCCCcCC-CCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCC
Q 046992 13 LSKLEYLYLPFNQLF-GKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDN 91 (404)
Q Consensus 13 l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 91 (404)
.++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL-------------------TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC-------------------CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS
T ss_pred CccCeEEEccCCcCChhHHHHH-------------------HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC
Confidence 467888888888876 566665 56677777777777777644 56677777777777777
Q ss_pred cccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccC--CccccCCCCCCEEeCcccccccccC---ccccC-Cc
Q 046992 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFL--PSSIGNLTNLRKLFLRHNNLSGSLP---LSIGN-LT 165 (404)
Q Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~-~~ 165 (404)
.+++.+|..+..+++|++|++++|+++ .+ +..+..+++|++|++++|.+++..+ ..+.. ++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~-------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIK-------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCC-------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCC-------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 777556666666777777777777776 22 2566777777777777777763322 23444 66
Q ss_pred ccEEEcc
Q 046992 166 LSFLVLD 172 (404)
Q Consensus 166 L~~L~l~ 172 (404)
|+.|+++
T Consensus 142 L~~L~l~ 148 (149)
T 2je0_A 142 LTYLDGY 148 (149)
T ss_dssp CCEETTB
T ss_pred cccccCC
Confidence 6666554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=6.3e-15 Score=125.20 Aligned_cols=127 Identities=24% Similarity=0.224 Sum_probs=85.1
Q ss_pred cEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccc-cccCCCCCCEEEccCCcccc
Q 046992 17 EYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFL-SWVTLSNFSRVYIYDNLLSG 95 (404)
Q Consensus 17 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~ 95 (404)
++++++++.++ .+|.. +. .++++|++++|.+++..+. .|..+++|++|++++|.+++
T Consensus 11 ~~l~~s~~~l~-~ip~~-------------------~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRD-------------------IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp TEEECTTSCCS-SCCSC-------------------CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCCcC-cCccC-------------------CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC
Confidence 67777777775 66665 22 2677777777777655443 36777777777777777776
Q ss_pred cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccC
Q 046992 96 TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTN 174 (404)
Q Consensus 96 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n 174 (404)
..|..|..+++|++|++++|+++ +..+..|..+++|++|++++|++++..|..+.. ++|++|++++|
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIK------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCC------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCHhHcCCcccCCEEECCCCcCC------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 66777777777777777777776 233445667777777777777777555655555 55666666555
Q ss_pred cCc
Q 046992 175 QFT 177 (404)
Q Consensus 175 ~l~ 177 (404)
.+.
T Consensus 137 ~l~ 139 (192)
T 1w8a_A 137 PFN 139 (192)
T ss_dssp CBC
T ss_pred Ccc
Confidence 554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=126.95 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=72.8
Q ss_pred cEEEcccCcCccCCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccC
Q 046992 167 SFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCA 246 (404)
Q Consensus 167 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 246 (404)
+.++++++.+..++..+ .++++.|++++|.+. .+|.. |..+++|+.|++++|.+++..
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~-----------~~~l~~L~~L~Ls~N~i~~i~-------- 70 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKE-----------LSNYKHLTLIDLSNNRISTLS-------- 70 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGG-----------GGGCTTCCEEECCSSCCCCCC--------
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHH-----------hhcccCCCEEECCCCcCCEeC--------
Confidence 45666677666654433 245666666666654 33332 344556666666666665322
Q ss_pred CccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhc
Q 046992 247 KLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFE 326 (404)
Q Consensus 247 ~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~ 326 (404)
+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|.++.. .+..|.
T Consensus 71 ---------~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~------------------~~~~~~ 123 (193)
T 2wfh_A 71 ---------NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV------------------PEGAFN 123 (193)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC------------------CTTTTT
T ss_pred ---------HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee------------------Chhhhh
Confidence 22344555666666666666655555566666666666666655531 233456
Q ss_pred cCCCCCEEECCCCcCcc
Q 046992 327 KMHGLSGIDMSYNELEG 343 (404)
Q Consensus 327 ~l~~L~~L~l~~N~l~~ 343 (404)
.+++|+.|++++|++.+
T Consensus 124 ~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred cCccccEEEeCCCCeec
Confidence 66666666666666654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.5e-15 Score=123.95 Aligned_cols=132 Identities=20% Similarity=0.088 Sum_probs=91.4
Q ss_pred CCCCCCcEEEcCCCCCC-CcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 54 GQLKSLFELDLSLNQLS-GSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 54 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
...++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++ .
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~------------~ 86 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG------------G 86 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS------------C
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch------------H
Confidence 34578899999999887 56777778888888888888888744 677888888888888888872 2
Q ss_pred CCccccCCCCCCEEeCcccccccccC-ccccC-CcccEEEcccCcCccCCC----ccCCCCCCCEEECCCCcc
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLP-LSIGN-LTLSFLVLDTNQFTSYVP----NICHSGLLEKYTNGNNRF 199 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~-~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~~ 199 (404)
+|..+..+++|++|++++|.+++... ..+.. ++|+.|++++|.+.+.++ .+..+++|+.|++++|.+
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 56666678888888888888873211 44444 566666666666655443 344455555555555443
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=5.6e-15 Score=136.61 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=109.7
Q ss_pred CCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc
Q 046992 56 LKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS 135 (404)
Q Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~ 135 (404)
+++|+.|++.+ .++.....+|..|++|+++++.+|.+....+.+|..+.++..+....+...... ......
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~--------~~i~~~ 170 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK--------NRWEHF 170 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS--------TTTTTS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc--------cccccc
Confidence 66666666666 555445556666666666666666665455556666555555554432110000 001122
Q ss_pred cccCCCCCC-EEeCcccccccccCccc-----cCCcccEEEcccCcCccCCCcc-CCCCCCCEEECCCCcccCCCchhhh
Q 046992 136 SIGNLTNLR-KLFLRHNNLSGSLPLSI-----GNLTLSFLVLDTNQFTSYVPNI-CHSGLLEKYTNGNNRFLGPIPKSLR 208 (404)
Q Consensus 136 ~~~~l~~L~-~L~l~~n~i~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~ 208 (404)
.|..+..|+ .+.+.... .++..+ ...++..+.+.++-.......+ ..+++|+.+++++|.+. .++.
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~--- 243 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPD--- 243 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECT---
T ss_pred ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecH---
Confidence 233334443 22222111 011100 0123334443332111100011 12566666666666554 2222
Q ss_pred cCCCCCccccccCCCccEEeCCCcccCccCCccccccCCcc-EEEE-----ec-CccccCCCCCCEEEcCCCcCCCCCch
Q 046992 209 NCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLG-SLNF-----SI-PMELGKLNSPTKLTLRENQLSGHLPR 281 (404)
Q Consensus 209 ~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l-----~~-p~~~~~l~~L~~L~L~~n~l~~~~~~ 281 (404)
..|.++++|+.+++.+| +.......|..|.+|+ .+.+ .+ +..|..+++|++++++.|.++...+.
T Consensus 244 -------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 244 -------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp -------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred -------hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 22455666666666665 5555555566666665 5555 22 34667788888888888888766677
Q ss_pred hccCCCCCCeEeC
Q 046992 282 GLNSLIQLEYLDL 294 (404)
Q Consensus 282 ~l~~l~~L~~L~L 294 (404)
+|.++++|+.+..
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 8888888888753
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.3e-14 Score=120.08 Aligned_cols=125 Identities=23% Similarity=0.257 Sum_probs=76.6
Q ss_pred cEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccccc
Q 046992 17 EYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGT 96 (404)
Q Consensus 17 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 96 (404)
++++++++.++ .+|.. + .++|++|++++|.++ .+|..|..+++|++|++++|.+++.
T Consensus 13 ~~l~~~~~~l~-~ip~~-------------------~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKG-------------------I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp TEEECTTSCCS-SCCSC-------------------C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CEEEcCCCCCC-cCCCC-------------------C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe
Confidence 56677777765 55654 2 245677777777776 5556666777777777777777655
Q ss_pred CCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCc
Q 046992 97 ISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQ 175 (404)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~ 175 (404)
.+..|..+++|++|++++|+++ +..+..|..+++|++|++++|+++...+..+.. ++|+.|++++|.
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLR------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CHhHccCCCCCCEEECCCCccC------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 5566667777777777777666 123345666666777777666666333333443 555555555554
Q ss_pred C
Q 046992 176 F 176 (404)
Q Consensus 176 l 176 (404)
+
T Consensus 138 ~ 138 (193)
T 2wfh_A 138 L 138 (193)
T ss_dssp E
T ss_pred e
Confidence 4
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=7.8e-15 Score=122.83 Aligned_cols=133 Identities=18% Similarity=0.157 Sum_probs=85.1
Q ss_pred hhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEc
Q 046992 9 QISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYI 88 (404)
Q Consensus 9 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 88 (404)
.+.++.+|++|++++|.++ .+|.. ....++|++|++++|.+++. ..+..+++|++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~-------------------~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~L 71 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENL-------------------GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCG-------------------GGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEEC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHh-------------------hhcCCCCCEEECCCCCCCcc--cccccCCCCCEEEC
Confidence 4566777888888888776 44431 22233777777777777643 46677777777777
Q ss_pred cCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc--cccCCCCCCEEeCcccccccccCcc----cc
Q 046992 89 YDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS--SIGNLTNLRKLFLRHNNLSGSLPLS----IG 162 (404)
Q Consensus 89 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~----~~ 162 (404)
++|.+++..+..+..+++|++|++++|++. .+|. .+..+++|+.|++++|.++ ..|.. +.
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~ 137 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSLV-------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY 137 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCCC-------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcCC-------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH
Confidence 777776444444567777777777777775 3444 5666777777777777776 44443 33
Q ss_pred C-CcccEEEcccCcCc
Q 046992 163 N-LTLSFLVLDTNQFT 177 (404)
Q Consensus 163 ~-~~L~~L~l~~n~l~ 177 (404)
. ++|+.|+++.|...
T Consensus 138 ~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCSEETTEECCHH
T ss_pred HCCccceeCCCcCCHH
Confidence 3 55666666655543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.4e-15 Score=119.36 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=80.2
Q ss_pred CCCCCcEEEcCCCCCC-CcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccC
Q 046992 55 QLKSLFELDLSLNQLS-GSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFL 133 (404)
Q Consensus 55 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~ 133 (404)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++ .+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~------------~~ 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG------------GL 80 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS------------CT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc------------hH
Confidence 4578889999999887 67777778888888888888888744 677888888888888888872 25
Q ss_pred CccccCCCCCCEEeCcccccccc-cCccccC-CcccEEEcccCcCccC
Q 046992 134 PSSIGNLTNLRKLFLRHNNLSGS-LPLSIGN-LTLSFLVLDTNQFTSY 179 (404)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~-~~L~~L~l~~n~l~~~ 179 (404)
|..+..+++|++|++++|++++. .+..+.. ++|++|++++|.+++.
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 66666788888888888887742 1244444 5555555555555443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.9e-14 Score=132.97 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=152.5
Q ss_pred CCccccccccch----hhhhcCC-CCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccC--------
Q 046992 37 LTHLKVTCTTWL----VYFFIGQ-LKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGN-------- 103 (404)
Q Consensus 37 l~~L~~l~l~~~----~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------- 103 (404)
+.+++.|.+++. ....+.. +++|++|||++|.+... ...-..++.++.+.+..+.+ ...+|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEe-cCcccccccccccccccccc---CHHHhcccccccccc
Confidence 566777776653 2233444 78899999999988711 11111223355556655543 3456667
Q ss_pred CCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCc----Ccc
Q 046992 104 LTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQ----FTS 178 (404)
Q Consensus 104 l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~----l~~ 178 (404)
+++|+.|++.+ .++ ..-+.+|.++++|+++++..|.+....+..|.. .++..+....+. ...
T Consensus 100 ~~~L~~l~L~~-~i~------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp CTTCCC-CBCT-TCC------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred cCCCcEEECCc-ccc------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 99999999988 666 133567889999999999999988555566665 556666554422 122
Q ss_pred CCC-ccCCCCCCC-EEECCCCcccCCCchhhhc----CCCCCc---------cc----cccCCCccEEeCCCcccCccCC
Q 046992 179 YVP-NICHSGLLE-KYTNGNNRFLGPIPKSLRN----CISLTT---------AY----FAFYATLTFLDLSHNNFYNELS 239 (404)
Q Consensus 179 ~~~-~l~~~~~L~-~L~l~~n~~~~~~~~~~~~----l~~L~~---------~~----~~~~~~L~~L~l~~n~l~~~~~ 239 (404)
+.. .+..+..|+ .+.+.... .++..+.. ..++.. .. ...+++|+.+++++|.++....
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 222 344455555 33333211 11111110 001110 00 1237899999999999987666
Q ss_pred ccccccCCccEEEE-----ecC-ccccCCCCCC-EEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceec
Q 046992 240 SNWAKCAKLGSLNF-----SIP-MELGKLNSPT-KLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNT 312 (404)
Q Consensus 240 ~~~~~l~~L~~L~l-----~~p-~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l 312 (404)
..|..|.+|+.+++ .++ ..|..+.+|+ .+++.+ .++...+.+|.+|++|+++++++|.+
T Consensus 244 ~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i------------- 309 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI------------- 309 (329)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC-------------
T ss_pred hhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc-------------
Confidence 66666666666655 122 2344555565 565555 44434445555566666655555555
Q ss_pred CCCcCcccCchhhccCCCCCEEEC
Q 046992 313 AYNNLSSLIPKCFEKMHGLSGIDM 336 (404)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l 336 (404)
+.+.+.+|.++++|+.++.
T Consensus 310 -----~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 310 -----TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -----CEECTTTTCTTCCCCEEEC
T ss_pred -----CccchhhhcCCcchhhhcc
Confidence 4457778999999999874
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.7e-13 Score=114.77 Aligned_cols=86 Identities=24% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSS 136 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~ 136 (404)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++ ..+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------~~~~~ 95 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS------------LPNGV 95 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc------------cCHHH
Confidence 455666666666654444445555666666666665554444445555556666655555551 12223
Q ss_pred ccCCCCCCEEeCcccccc
Q 046992 137 IGNLTNLRKLFLRHNNLS 154 (404)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~ 154 (404)
+..+++|++|++++|+++
T Consensus 96 ~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLK 113 (177)
T ss_dssp TTTCTTCCEEECCSSCCS
T ss_pred hhCCcccCEEECcCCcce
Confidence 445555555555555554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.9e-13 Score=113.24 Aligned_cols=131 Identities=25% Similarity=0.205 Sum_probs=101.7
Q ss_pred CcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCcccc
Q 046992 59 LFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIG 138 (404)
Q Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~ 138 (404)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++ ..+..+.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS------------LPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC------------CCTTTTT
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE------------eChhHcc
Confidence 578889999887 455443 4789999999999986666678889999999999998882 2334568
Q ss_pred CCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCc
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIP 204 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~ 204 (404)
.+++|++|++++|++++..+..+.. ++|++|++++|.++++++ .+..+++|++|++++|.+.+..+
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8999999999999998555555666 888888888888887666 45667888888888888775544
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=2.8e-12 Score=121.30 Aligned_cols=222 Identities=9% Similarity=0.018 Sum_probs=145.1
Q ss_pred hcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 52 FIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 52 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
+|.+. +|+.+.+.. .++.....+|..|++|+.+++.+|.++.....+|. ..+|+.+.+..+ ++ .
T Consensus 153 aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~------------~ 216 (401)
T 4fdw_A 153 AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK------------E 216 (401)
T ss_dssp TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC------------E
T ss_pred hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh------------e
Confidence 35553 688888876 55555567788888888888888888755555565 578888888754 43 1
Q ss_pred cCCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcC
Q 046992 132 FLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNC 210 (404)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l 210 (404)
.-...|.++++|+.+.+..+ ++......|...+|+.+.+ .+.+..+.. .+..+++|+.+.+.++.+.... .
T Consensus 217 I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------~ 288 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP------E 288 (401)
T ss_dssp ECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT------T
T ss_pred ehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc------c
Confidence 33566778888888888765 4434445555577888888 444665555 7778888888888777653110 1
Q ss_pred CCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-----ec-CccccCCCCCCEEEcCCCcCCCCCchhcc
Q 046992 211 ISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-----SI-PMELGKLNSPTKLTLRENQLSGHLPRGLN 284 (404)
Q Consensus 211 ~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 284 (404)
..+....|.+|++|+.+++.+ .++......|..|.+|+.+.+ .+ ...|..+ +|+.+.+.+|.+.......|.
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 123344577888888888884 466666667777777777666 12 2345556 777777777766655555566
Q ss_pred CCC-CCCeEeCCCCcc
Q 046992 285 SLI-QLEYLDLSANSF 299 (404)
Q Consensus 285 ~l~-~L~~L~L~~n~l 299 (404)
.++ .++.|.+..+.+
T Consensus 367 ~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 367 GFPDDITVIRVPAESV 382 (401)
T ss_dssp CSCTTCCEEEECGGGH
T ss_pred CCCCCccEEEeCHHHH
Confidence 553 566666665544
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.6e-14 Score=116.76 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=71.7
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCC-CCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTL-SNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
+..+.+|++|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~------------- 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC------------- 77 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-------------
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-------------
Confidence 5567788888888888873 343 4444 4788888888887743 56777778888888888777
Q ss_pred cCCcc-ccCCCCCCEEeCcccccccccCc--cccC-CcccEEEcccCcCccC
Q 046992 132 FLPSS-IGNLTNLRKLFLRHNNLSGSLPL--SIGN-LTLSFLVLDTNQFTSY 179 (404)
Q Consensus 132 ~~~~~-~~~l~~L~~L~l~~n~i~~~~~~--~~~~-~~L~~L~l~~n~l~~~ 179 (404)
.+|.. +..+++|++|++++|+++ .+|. .+.. ++|+.|++++|.+...
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc
Confidence 34433 367777777777777775 4443 3444 5555555555555443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=3.9e-16 Score=133.42 Aligned_cols=140 Identities=21% Similarity=0.217 Sum_probs=65.3
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccccc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGF 132 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~ 132 (404)
+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-------------~ 107 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-------------S 107 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-------------C
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-------------c
Confidence 4444555555555555543 33 4444555555555555544 33444444444555555554444 2
Q ss_pred CCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCC--ccCCCCCCCEEECCCCcccCCCchhhhcC
Q 046992 133 LPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVP--NICHSGLLEKYTNGNNRFLGPIPKSLRNC 210 (404)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~l 210 (404)
+| .+..+++ |++|++++|.+..... .+..+++|++|++++|.+.+..|..- ..
T Consensus 108 l~-~~~~l~~-----------------------L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~ 162 (198)
T 1ds9_A 108 LS-GIEKLVN-----------------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-AT 162 (198)
T ss_dssp HH-HHHHHHH-----------------------SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-TH
T ss_pred CC-ccccCCC-----------------------CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc-ch
Confidence 22 2344444 4445554444443322 34556666666666666554433210 00
Q ss_pred CCCCccccccCCCccEEeCCCcccC
Q 046992 211 ISLTTAYFAFYATLTFLDLSHNNFY 235 (404)
Q Consensus 211 ~~L~~~~~~~~~~L~~L~l~~n~l~ 235 (404)
.......+..+++|+.|| ++.++
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccC
Confidence 000011245567777776 55554
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=6.7e-12 Score=118.72 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=100.4
Q ss_pred hhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccc
Q 046992 51 FFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFR 130 (404)
Q Consensus 51 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~ 130 (404)
.+|.+. +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .++.....+|..+++|+.+++.+|+++
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~------------ 193 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT------------ 193 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS------------
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce------------
Confidence 345554 6777777665 554455566663 677777775 555455567777777888887777766
Q ss_pred ccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhh
Q 046992 131 GFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLR 208 (404)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~ 208 (404)
.++.......+|+.+.+..+ ++......|.. .+|+.+.+..+ +..+.. .+.. .+|+.+.+..+ +.
T Consensus 194 -~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~-------- 260 (401)
T 4fdw_A 194 -KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT-------- 260 (401)
T ss_dssp -EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC--------
T ss_pred -EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc--------
Confidence 44444434677777777644 55344455555 67777777654 444444 3333 66777766332 22
Q ss_pred cCCCCCccccccCCCccEEeCCCcccC-----ccCCccccccCCccEEE
Q 046992 209 NCISLTTAYFAFYATLTFLDLSHNNFY-----NELSSNWAKCAKLGSLN 252 (404)
Q Consensus 209 ~l~~L~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ 252 (404)
.+....|.++++|+.+++.++.+. ......|..|++|+.+.
T Consensus 261 ---~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 261 ---NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp ---EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred ---EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 223344677777888877776553 23334444444444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=6.5e-13 Score=110.33 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=78.5
Q ss_pred CccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCccccc
Q 046992 223 TLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQS 302 (404)
Q Consensus 223 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 302 (404)
..+.+++++|.++. +|..+ .++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus 10 ~~~~l~~s~n~l~~------------------ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 10 SGTTVDCSGKSLAS------------------VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp ETTEEECTTSCCSS------------------CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEEEeCCCCcCc------------------cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc
Confidence 35789999998873 45444 37899999999999987788899999999999999998864
Q ss_pred ccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC-CcccCCCChhhhccCcCCCCCC
Q 046992 303 IPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN-SAVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 303 ~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 369 (404)
.+..|.++++|++|+|++|++++..+. ...+++++.+++.+||+.|.+.
T Consensus 70 ------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 70 ------------------PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ------------------ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 333456666666666666666654443 3455666666666666666553
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.3e-15 Score=130.19 Aligned_cols=127 Identities=24% Similarity=0.221 Sum_probs=83.2
Q ss_pred cccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCcc
Q 046992 100 FIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTS 178 (404)
Q Consensus 100 ~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~ 178 (404)
.+..+++|++|++++|+++ .+| .+..+++|++|++++|.++ .+|..+.. ++|++|++++|.+.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-------------~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-------------KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-------------CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred HHhcCCCCCEEECCCCCCc-------------ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence 4555555555555555555 234 4555555666666666555 44544444 566666666666655
Q ss_pred CCCccCCCCCCCEEECCCCcccCCCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCcc----------ccccCCc
Q 046992 179 YVPNICHSGLLEKYTNGNNRFLGPIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSN----------WAKCAKL 248 (404)
Q Consensus 179 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~----------~~~l~~L 248 (404)
.+ .+..+++|+.|++++|.+.+. +. + ..+..+++|++|++++|.+.+.+|.. +..+++|
T Consensus 108 l~-~~~~l~~L~~L~l~~N~i~~~-~~-~--------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 108 LS-GIEKLVNLRVLYMSNNKITNW-GE-I--------DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp HH-HHHHHHHSSEEEESEEECCCH-HH-H--------HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred CC-ccccCCCCCEEECCCCcCCch-hH-H--------HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 32 456678899999999998732 21 0 12467889999999999998776553 7889999
Q ss_pred cEEE
Q 046992 249 GSLN 252 (404)
Q Consensus 249 ~~L~ 252 (404)
+.|+
T Consensus 177 ~~Ld 180 (198)
T 1ds9_A 177 KKLD 180 (198)
T ss_dssp SEEC
T ss_pred EEEC
Confidence 9885
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.6e-12 Score=108.00 Aligned_cols=107 Identities=23% Similarity=0.209 Sum_probs=86.7
Q ss_pred cCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCccc
Q 046992 15 KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLS 94 (404)
Q Consensus 15 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 94 (404)
..++++++++.++ .+|.. + .++|++|++++|.|++..|..|..+++|++|++++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~-------------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTG-------------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp ETTEEECTTSCCS-SCCSC-------------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCCEEEeCCCCcC-ccCcc-------------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 4578899999887 67765 3 377889999999998777888889999999999999998
Q ss_pred ccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccccccc
Q 046992 95 GTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSG 155 (404)
Q Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 155 (404)
+..+..|..+++|++|++++|++++ ..+..|..+++|++|++++|.+..
T Consensus 68 ~l~~~~f~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 68 VLPAGVFDKLTQLTQLSLNDNQLKS------------IPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccChhhccCCCCCCEEECCCCccCE------------eCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6666677889999999999998882 223457888899999999998873
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=1e-11 Score=117.50 Aligned_cols=267 Identities=14% Similarity=0.087 Sum_probs=128.5
Q ss_pred hhhcCCCcCcEeeCCCCcCCCCCCcccccCCccccccccch----hhhhcCCCCCCcEEEcCCCCCCCcc----------
Q 046992 8 PQISNLSKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL----VYFFIGQLKSLFELDLSLNQLSGSI---------- 73 (404)
Q Consensus 8 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~---------- 73 (404)
.+|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+.+... ...+|.++.+|+.+.+..+ +....
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 36888888998888754 55344566778888888877432 3445666777766655443 11111
Q ss_pred ------------cccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCC
Q 046992 74 ------------FLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLT 141 (404)
Q Consensus 74 ------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~ 141 (404)
..+|..+.+|+.+.+.++... ....+|..+.+|+.+.+..+ ++ ......|.++.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~------------~I~~~~F~~~~ 208 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LK------------IIRDYCFAECI 208 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CC------------EECTTTTTTCT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ce------------EeCchhhcccc
Confidence 233445555555555443221 33344555555555555443 11 12234455555
Q ss_pred CCCEEeCcccccccccCccccCCcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC------
Q 046992 142 NLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT------ 214 (404)
Q Consensus 142 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~------ 214 (404)
.|+.+.+..+... .....+....|+.+.+... +..+.. .+..+..++.+.+..+... .....+..+..+.
T Consensus 209 ~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 209 LLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred ccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 5665555544322 1122222255555555432 222222 4455666666666554321 1122222222222
Q ss_pred ----ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-----ec-CccccCCCCCCEEEcCCCcCCCCCchhcc
Q 046992 215 ----TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-----SI-PMELGKLNSPTKLTLRENQLSGHLPRGLN 284 (404)
Q Consensus 215 ----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 284 (404)
...|..+.+|+.+.+..+ ++.....+|..|.+|+.+.+ .+ ...|.++.+|+.+.+..+ ++.....+|.
T Consensus 286 ~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 286 VIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp SEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred eeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 223444555555555433 33333444555555555543 11 123344555555555443 3333344555
Q ss_pred CCCCCCeEeCC
Q 046992 285 SLIQLEYLDLS 295 (404)
Q Consensus 285 ~l~~L~~L~L~ 295 (404)
+|++|+.+++.
T Consensus 364 ~C~~L~~i~lp 374 (394)
T 4fs7_A 364 GCINLKKVELP 374 (394)
T ss_dssp TCTTCCEEEEE
T ss_pred CCCCCCEEEEC
Confidence 55555555543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.1e-12 Score=107.58 Aligned_cols=104 Identities=25% Similarity=0.304 Sum_probs=82.4
Q ss_pred CcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccc
Q 046992 16 LEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSG 95 (404)
Q Consensus 16 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 95 (404)
-+.++++++.+. .+|.. + .++|++|++++|.+++..|..|..+++|++|++++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~-------------------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAG-------------------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp SSEEECCSSCCS-SCCSC-------------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcEEEeCCCCCC-ccCCC-------------------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 367888888886 77765 3 2678888888888887778888888888888888888886
Q ss_pred cCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCc-cccCCCCCCEEeCcccccc
Q 046992 96 TISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPS-SIGNLTNLRKLFLRHNNLS 154 (404)
Q Consensus 96 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~ 154 (404)
..+..|..+++|++|++++|+++ .+|. .|..+++|++|++++|.+.
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~-------------~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLK-------------SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cChhHhCCcchhhEEECCCCccc-------------eeCHHHhccccCCCEEEeCCCCcc
Confidence 55556788888888888888887 3444 4778888888888888877
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.6e-12 Score=108.31 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=74.0
Q ss_pred ccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccc
Q 046992 224 LTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSI 303 (404)
Q Consensus 224 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 303 (404)
-+.+++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|+|++|++++..
T Consensus 14 ~~~l~~~~n~l~------------------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 14 QTLVNCQNIRLA------------------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SSEEECCSSCCS------------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcEEEeCCCCCC------------------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC
Confidence 368899999886 3455443 78999999999999877889999999999999999998743
Q ss_pred cccccceecCCCcCcccCchhhccCCCCCEEECCCCcCcccCCC-CcccCCCChhhhccCcCCCCC
Q 046992 304 PELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGSTPN-SAVFRDAPLAALQKNKRLCSN 368 (404)
Q Consensus 304 ~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~ 368 (404)
+ ..|.++++|+.|+|++|++++..+. ...+++++.+++.+|++.|.+
T Consensus 74 ~------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 74 T------------------GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp T------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred h------------------hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 3 2345555555555555555544433 344555555555555555544
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.4e-11 Score=111.89 Aligned_cols=87 Identities=25% Similarity=0.279 Sum_probs=58.2
Q ss_pred ecCccccCCCCCCEEEcCC-CcCCCCCchhccCCCCCCeEeCCCCcccccccccc------cceecCCCcCcccCchhhc
Q 046992 254 SIPMELGKLNSPTKLTLRE-NQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELC------NLLNTAYNNLSSLIPKCFE 326 (404)
Q Consensus 254 ~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------~~L~l~~n~l~~~~~~~~~ 326 (404)
.+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|++++.+|..+ +.|+|++|+|+++.+..|.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 3577 77888999999996 99987777889999999999999999987644311 1444444444444333443
Q ss_pred cCCCCCEEECCCCcCc
Q 046992 327 KMHGLSGIDMSYNELE 342 (404)
Q Consensus 327 ~l~~L~~L~l~~N~l~ 342 (404)
.++ |+.|+|.+|++.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 333 555555555444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=8.4e-13 Score=123.71 Aligned_cols=171 Identities=17% Similarity=0.075 Sum_probs=97.2
Q ss_pred CcCcEeeCCCCcCCCCCCcccccCCccccccccchhhhhcC-CCCCCcEEEcCCCCCCCcccccc-cCCCCCCEEEccCC
Q 046992 14 SKLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWLVYFFIG-QLKSLFELDLSLNQLSGSIFLSW-VTLSNFSRVYIYDN 91 (404)
Q Consensus 14 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n 91 (404)
++|++|++++|.++......+.. .+. ..++|++|+|++|.++......+ ..+++|++|++++|
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~---------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAA---------------VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHH---------------HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCCCCHHHHHHHHH---------------HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 56777777777765332222211 122 23577888888887764333332 23567788888888
Q ss_pred cccccCCccc-----cCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccccccccc----Ccccc
Q 046992 92 LLSGTISPFI-----GNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSL----PLSIG 162 (404)
Q Consensus 92 ~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~----~~~~~ 162 (404)
.++......+ ...+.|++|++++|.++.... ..++..+...++|++|++++|.+++.. +..+.
T Consensus 137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~--------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV--------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH--------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH--------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 7754333332 235678888888777651000 013344456777788888887776432 23333
Q ss_pred C-CcccEEEcccCcCccCCC-----ccCCCCCCCEEECCCCcccCCCchhh
Q 046992 163 N-LTLSFLVLDTNQFTSYVP-----NICHSGLLEKYTNGNNRFLGPIPKSL 207 (404)
Q Consensus 163 ~-~~L~~L~l~~n~l~~~~~-----~l~~~~~L~~L~l~~n~~~~~~~~~~ 207 (404)
. ++|+.|++++|.++.... .+...+.|++|++++|.+.......+
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3 567777777777654221 23345667777777776654433333
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.1e-09 Score=103.67 Aligned_cols=239 Identities=13% Similarity=0.051 Sum_probs=120.8
Q ss_pred hhcCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCC-----
Q 046992 51 FFIGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLR----- 125 (404)
Q Consensus 51 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~----- 125 (404)
.+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|..+.+|+.+.+..+-..-......
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 34566666666666533 44344455666666666666543 332334455555555555443221100000000
Q ss_pred ----CCcccccCCccccCCCCCCEEeCcccccccccCccccC-CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcc
Q 046992 126 ----QNQFRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGN-LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRF 199 (404)
Q Consensus 126 ----~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~ 199 (404)
.......-...|.++++|+.+.+..+... .....|.. .+|+.+.+..+ +..+.. .+..+..|+.+.+..+..
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 00011112345666777777777654332 33444554 66777766554 333333 555566666665544322
Q ss_pred cCCCchhhhcC------------CCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEE---ecC-ccccCCC
Q 046992 200 LGPIPKSLRNC------------ISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF---SIP-MELGKLN 263 (404)
Q Consensus 200 ~~~~~~~~~~l------------~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---~~p-~~~~~l~ 263 (404)
. +......+ ..+....|..+..++.+.+..+.. ......|..+..++.... .++ ..+..+.
T Consensus 221 ~--i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 221 Y--LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp E--ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred E--eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeeccccccccc
Confidence 1 11111111 112233456667777777765532 344455666666666555 222 2445667
Q ss_pred CCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCC
Q 046992 264 SPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSAN 297 (404)
Q Consensus 264 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 297 (404)
+|+.+.+..+ ++.....+|.++.+|+.+++..+
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 7777777654 44345566777777777777543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=9.2e-13 Score=123.42 Aligned_cols=141 Identities=19% Similarity=0.125 Sum_probs=79.4
Q ss_pred CCCCEEeCcccccccccCccccC--CcccEEEcccCcCccCCC-cc-----CCCCCCCEEECCCCcccCCCchhhhcCCC
Q 046992 141 TNLRKLFLRHNNLSGSLPLSIGN--LTLSFLVLDTNQFTSYVP-NI-----CHSGLLEKYTNGNNRFLGPIPKSLRNCIS 212 (404)
Q Consensus 141 ~~L~~L~l~~n~i~~~~~~~~~~--~~L~~L~l~~n~l~~~~~-~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 212 (404)
++|++|++++|.++......+.. .+|+.|++++|.++.... .+ ...+.|+.|++++|.+.......+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~--- 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME--- 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH---
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH---
Confidence 45666666666655333333332 456666666666543222 11 23466777777777665322222211
Q ss_pred CCccccccCCCccEEeCCCcccCccCCccccccCCccEEEEecCccccCCCCCCEEEcCCCcCCCC----CchhccCCCC
Q 046992 213 LTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNFSIPMELGKLNSPTKLTLRENQLSGH----LPRGLNSLIQ 288 (404)
Q Consensus 213 L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~ 288 (404)
.+..+++|++|++++|.+++.... .++..+...++|++|+|++|.+++. ++..+...++
T Consensus 178 ----~L~~~~~L~~L~Ls~N~l~~~g~~-------------~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~ 240 (372)
T 3un9_A 178 ----GLAGNTSVTHLSLLHTGLGDEGLE-------------LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240 (372)
T ss_dssp ----HHHTCSSCCEEECTTSSCHHHHHH-------------HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS
T ss_pred ----HHhcCCCcCEEeCCCCCCCcHHHH-------------HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC
Confidence 134566778888888877543211 1233345566788888888887643 3334455677
Q ss_pred CCeEeCCCCcccc
Q 046992 289 LEYLDLSANSFSQ 301 (404)
Q Consensus 289 L~~L~L~~n~l~~ 301 (404)
|++|+|++|.|+.
T Consensus 241 L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 241 LELLHLYFNELSS 253 (372)
T ss_dssp CCEEECTTSSCCH
T ss_pred CCEEeccCCCCCH
Confidence 8888888887764
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=8.2e-09 Score=97.53 Aligned_cols=251 Identities=13% Similarity=0.153 Sum_probs=128.8
Q ss_pred hcCCCCCCcEEEcCCCC---CCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCc
Q 046992 52 FIGQLKSLFELDLSLNQ---LSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQ 128 (404)
Q Consensus 52 ~l~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~ 128 (404)
+|.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++.....+|..+.+|+.+.+..+...
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~---------- 150 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTS---------- 150 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCE----------
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeee----------
Confidence 46666666666665543 33333445666666666655443 23234445566666666666543221
Q ss_pred ccccCCccccCCCCCCEEeCcccccccccCccccCCcccEEEcccCcCccCCCccCCCCCCCEEECCCCcccC-------
Q 046992 129 FRGFLPSSIGNLTNLRKLFLRHNNLSGSLPLSIGNLTLSFLVLDTNQFTSYVPNICHSGLLEKYTNGNNRFLG------- 201 (404)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~------- 201 (404)
.....|..+..|+.+.+..+ ++......|....|+.+.+..+...-....+..+..+............
T Consensus 151 ---I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~ 226 (394)
T 4gt6_A 151 ---VADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYE 226 (394)
T ss_dssp ---ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEE
T ss_pred ---ecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeec
Confidence 22334555566666665543 2212223333345555555433221111133444444444332221110
Q ss_pred ---------------------CCchhhhcCCCCCccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-----ec
Q 046992 202 ---------------------PIPKSLRNCISLTTAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-----SI 255 (404)
Q Consensus 202 ---------------------~~~~~~~~l~~L~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~ 255 (404)
.+|.. +..+....|..+..|+.+.+..+.. ......|..+.+|+.+.+ .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~i~~I 302 (394)
T 4gt6_A 227 KSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSRITEL 302 (394)
T ss_dssp ECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTTCCEE
T ss_pred ccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEecccccc-eecCcccccccccccccCCCccccc
Confidence 01111 1112234566677777777755432 344455666666666655 22
Q ss_pred C-ccccCCCCCCEEEcCCCcCCCCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEE
Q 046992 256 P-MELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGI 334 (404)
Q Consensus 256 p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L 334 (404)
+ ..|..+.+|+.+.+..+ ++.....+|.+|.+|+++.+..+ ++.+...+|.++++|+.+
T Consensus 303 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-------------------v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 303 PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-------------------VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-------------------CCBCCGGGGTTCTTCCEE
T ss_pred CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-------------------cCEEhHhHhhCCCCCCEE
Confidence 2 23455666777766543 44344556666777777666433 333456789999999999
Q ss_pred ECCCCcC
Q 046992 335 DMSYNEL 341 (404)
Q Consensus 335 ~l~~N~l 341 (404)
++.+|..
T Consensus 363 ~~~~~~~ 369 (394)
T 4gt6_A 363 EYSGSRS 369 (394)
T ss_dssp EESSCHH
T ss_pred EECCcee
Confidence 9988764
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.9e-10 Score=106.90 Aligned_cols=88 Identities=22% Similarity=0.162 Sum_probs=56.1
Q ss_pred cCCCCCCcEEEcCC-CCCCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccc
Q 046992 53 IGQLKSLFELDLSL-NQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRG 131 (404)
Q Consensus 53 l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~ 131 (404)
+..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|+++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------------- 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE------------- 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-------------
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-------------
Confidence 34455666777764 6666555566777777777777777776666666677777777777777766
Q ss_pred cCCcc-ccCCCCCCEEeCcccccc
Q 046992 132 FLPSS-IGNLTNLRKLFLRHNNLS 154 (404)
Q Consensus 132 ~~~~~-~~~l~~L~~L~l~~n~i~ 154 (404)
.+|.. +..++ |+.|++.+|.+.
T Consensus 94 ~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 94 SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eeCHHHcccCC-ceEEEeeCCCcc
Confidence 33333 33333 777777777665
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=6.4e-09 Score=98.28 Aligned_cols=293 Identities=10% Similarity=0.053 Sum_probs=151.4
Q ss_pred hhcCCC-cCcEeeCCCCcCCCCCCcccccCCccccccccch--------hhhhcCCCCCCcEEEcCCCCCCCcccccccC
Q 046992 9 QISNLS-KLEYLYLPFNQLFGKIPPEIGLLTHLKVTCTTWL--------VYFFIGQLKSLFELDLSLNQLSGSIFLSWVT 79 (404)
Q Consensus 9 ~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~~--------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (404)
+|.+++ .|+.+.+..+ ++..-..+|.+|.+|+.+.+... ...+|..+.+|+.+.+..+ ++.....+|..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 566664 4677766543 44344456667777776655332 2334555666666655543 33234455666
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCcCCCCCccCCCCccc---------ccCCccccCCCCCCEEeCcc
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFR---------GFLPSSIGNLTNLRKLFLRH 150 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~ 150 (404)
+.+|+.+.+..+. ......+|..+..|+.+.+..+--.-.-.....+.++ ......|..+..++......
T Consensus 136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred hccccccccccee-eeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceecccc
Confidence 6677777665432 2234445566666666666543111000000000000 01123334444444444333
Q ss_pred cccccccCccccC---------------CcccEEEcccCcCccCCC-ccCCCCCCCEEECCCCcccCCCchhhhcCCCCC
Q 046992 151 NNLSGSLPLSIGN---------------LTLSFLVLDTNQFTSYVP-NICHSGLLEKYTNGNNRFLGPIPKSLRNCISLT 214 (404)
Q Consensus 151 n~i~~~~~~~~~~---------------~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 214 (404)
.... .....+.. ..+..+.+. +.+..+.. .+..+..|+.+.+..+.. .+.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~------------~I~ 280 (394)
T 4gt6_A 215 ESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV------------SIG 280 (394)
T ss_dssp SSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC------------EEC
T ss_pred cccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc------------eec
Confidence 2221 11111100 111122221 11122222 455566677666654322 112
Q ss_pred ccccccCCCccEEeCCCcccCccCCccccccCCccEEEE-----ec-CccccCCCCCCEEEcCCCcCCCCCchhccCCCC
Q 046992 215 TAYFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-----SI-PMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQ 288 (404)
Q Consensus 215 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 288 (404)
...|.+++.|+.+.+. +.++......|..|.+|+.+.+ .+ ...|..+.+|+++.+..+ ++.....+|.+|.+
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 3346777888888886 3455566678888888888876 22 335678899999999754 66566789999999
Q ss_pred CCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcC
Q 046992 289 LEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNEL 341 (404)
Q Consensus 289 L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 341 (404)
|+.+++.++... ..++..+.+|+.+.+..|.+
T Consensus 359 L~~i~~~~~~~~---------------------~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---------------------WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHH---------------------HHTCBCCCCC----------
T ss_pred CCEEEECCceee---------------------hhhhhccCCCCEEEeCCCCE
Confidence 999999887543 13567778888888877754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=5.1e-10 Score=104.01 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCCCEEEcCCCcCCCCC----chhccCCCCCCeEeCCCCcccc
Q 046992 262 LNSPTKLTLRENQLSGHL----PRGLNSLIQLEYLDLSANSFSQ 301 (404)
Q Consensus 262 l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~ 301 (404)
+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 456666666666665322 2222345666677776666653
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.64 E-value=2.1e-06 Score=80.38 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=57.6
Q ss_pred ccccCCCccEEeCCCcccCccCCccccccCCccEEEE-----ecC-ccccCCCCCCEEEcCCCcCCCCCchhccCCCCCC
Q 046992 217 YFAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF-----SIP-MELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLE 290 (404)
Q Consensus 217 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 290 (404)
.|..+..|+.+.+..+ ++......|..+.+|+.+.+ .++ ..+..+.+|+.+.+.++.++.....+|.++.+|+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 3445555555555443 33344445555555555544 111 2344555666666665555544455566666666
Q ss_pred eEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCC
Q 046992 291 YLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYN 339 (404)
Q Consensus 291 ~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 339 (404)
.+.|..+ ++.+...+|.++++|+.+.+..+
T Consensus 314 ~i~lp~~-------------------l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 314 SVTLPTA-------------------LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTT-------------------CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EEEcCcc-------------------ccEEHHHHhhCCCCCCEEEECCc
Confidence 6665432 33445678889999988887554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=8.2e-09 Score=95.86 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=28.6
Q ss_pred cCCCCCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEECc
Q 046992 53 IGQLKSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIG--NLTSLVDLQLN 113 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~ 113 (404)
+..+|+|+.|++++|.-. .++. + .+++|++|++..+.+.......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445566666666655211 1221 2 256666666666555432222222 45666666654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=3.9e-09 Score=88.60 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=28.0
Q ss_pred cCCCCCCcEEEcCCCCCCCc----ccccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEEC--cCCcCC
Q 046992 53 IGQLKSLFELDLSLNQLSGS----IFLSWVTLSNFSRVYIYDNLLSGT----ISPFIGNLTSLVDLQL--NSNQLI 118 (404)
Q Consensus 53 l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~ 118 (404)
+...++|++|+|++|.|... +...+...+.|++|++++|.+... +...+...+.|++|++ ++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 33444455555555554422 122233334455555555544321 2233334444555554 444443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=4.2e-06 Score=78.31 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=46.7
Q ss_pred cccCCCccEEeCCCcccCccCCccccccCCccEEEE------ec-CccccCCCCCCEEEcCCCcCCCCCchhccCCCCCC
Q 046992 218 FAFYATLTFLDLSHNNFYNELSSNWAKCAKLGSLNF------SI-PMELGKLNSPTKLTLRENQLSGHLPRGLNSLIQLE 290 (404)
Q Consensus 218 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 290 (404)
|..+..|+.+.+..+ +.......|..|.+|+.+.+ .+ ...|.++.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 444555555555432 33334445555556655555 12 234566778888888654 5545567788888888
Q ss_pred eEeCCCC
Q 046992 291 YLDLSAN 297 (404)
Q Consensus 291 ~L~L~~n 297 (404)
++.+..+
T Consensus 337 ~i~ip~~ 343 (379)
T 4h09_A 337 TISYPKS 343 (379)
T ss_dssp CCCCCTT
T ss_pred EEEECCc
Confidence 8888654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=7e-08 Score=80.86 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=73.5
Q ss_pred hhhcCCCCCCcEEEcCCC-CCCCc----ccccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCCcCCCC
Q 046992 50 YFFIGQLKSLFELDLSLN-QLSGS----IFLSWVTLSNFSRVYIYDNLLSGT----ISPFIGNLTSLVDLQLNSNQLIGH 120 (404)
Q Consensus 50 ~~~l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 120 (404)
...+...+.|++|+|++| .+... +...+...++|++|++++|.+... +...+...+.|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344777888999999998 87643 334556678888888888887532 334455567788888888877611
Q ss_pred CccCCCCcccccCCccccCCCCCCEEeC--cccccccccCcc----ccC-CcccEEEcccCcC
Q 046992 121 IPNLRQNQFRGFLPSSIGNLTNLRKLFL--RHNNLSGSLPLS----IGN-LTLSFLVLDTNQF 176 (404)
Q Consensus 121 ~~~l~~n~~~~~~~~~~~~l~~L~~L~l--~~n~i~~~~~~~----~~~-~~L~~L~l~~n~l 176 (404)
-. ..+...+...+.|++|++ ++|.++...... +.. ++|++|++++|.+
T Consensus 109 g~--------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GI--------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HH--------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HH--------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 00 013445556677778877 677776432222 222 4455555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=3.9e-07 Score=80.42 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCCCCCcEEEcCCCCCCC--cccccccCCCCCCEEEccCCcccccCCccccCCC--CCCEEECcCCcCCCCCccCCCCcc
Q 046992 54 GQLKSLFELDLSLNQLSG--SIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLT--SLVDLQLNSNQLIGHIPNLRQNQF 129 (404)
Q Consensus 54 ~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~l~~n~~ 129 (404)
.++++|+.|+|++|.|++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~---- 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS---- 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH----
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch----
Confidence 467889999999999986 3456677899999999999998753 3344444 89999999999874322100
Q ss_pred cccCCccccCCCCCCEEeC
Q 046992 130 RGFLPSSIGNLTNLRKLFL 148 (404)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l 148 (404)
......+..+++|+.||-
T Consensus 241 -~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 -TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -HHHHHHHHHCTTCCEESS
T ss_pred -hHHHHHHHHCcccCeECC
Confidence 011134567888888764
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=5.6e-07 Score=73.78 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=55.3
Q ss_pred CCCcEEEcCCCCCCCcccccccCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEECcCCc-CCCCCccCCCCccc
Q 046992 57 KSLFELDLSLNQLSGSIFLSWVTLSNFSRVYIYDNL-LSGTISPFIGNL----TSLVDLQLNSNQ-LIGHIPNLRQNQFR 130 (404)
Q Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~l~~n~~~ 130 (404)
.+|+.||+++|.++......+..+++|++|++++|. ++...-..+..+ ++|++|++++|. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT------------ 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT------------ 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC------------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC------------
Confidence 367788888887776656667778888888888874 553333344443 368888888774 54
Q ss_pred ccCCccccCCCCCCEEeCcccc
Q 046992 131 GFLPSSIGNLTNLRKLFLRHNN 152 (404)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~n~ 152 (404)
..--..+..+++|++|++++|.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHHhcCCCCCEEECCCCC
Confidence 1222345667888888888875
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=3.3e-06 Score=74.43 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=75.4
Q ss_pred hcCCCCCCcE--EEcCCCCCC---CcccccccCCCCCCEEEccCCcccc--cCCccccCCCCCCEEECcCCcCCCCCccC
Q 046992 52 FIGQLKSLFE--LDLSLNQLS---GSIFLSWVTLSNFSRVYIYDNLLSG--TISPFIGNLTSLVDLQLNSNQLIGHIPNL 124 (404)
Q Consensus 52 ~l~~l~~L~~--L~Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~l 124 (404)
.+...+.|+. ++++.|... +.+......+++|++|+|++|.+++ .++..+..+++|+.|+|++|++.+
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~----- 210 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----- 210 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-----
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-----
Confidence 3555666766 778888533 2222233578999999999999986 445677789999999999999982
Q ss_pred CCCcccccCCccccCCC--CCCEEeCcccccccccCc-------cccC-CcccEEE
Q 046992 125 RQNQFRGFLPSSIGNLT--NLRKLFLRHNNLSGSLPL-------SIGN-LTLSFLV 170 (404)
Q Consensus 125 ~~n~~~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~~-------~~~~-~~L~~L~ 170 (404)
+ ..+..+. +|++|++++|.+.+.+|. .+.. ++|+.|+
T Consensus 211 --------~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 211 --------E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp --------G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred --------c-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 2 2333343 999999999999876552 2333 7888776
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.2e-06 Score=70.26 Aligned_cols=84 Identities=8% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCCc-CCCCCccCCCCcccccCCccccCC----CCCCEEeCcccc-c
Q 046992 80 LSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNSNQ-LIGHIPNLRQNQFRGFLPSSIGNL----TNLRKLFLRHNN-L 153 (404)
Q Consensus 80 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~l~~n~~~~~~~~~~~~l----~~L~~L~l~~n~-i 153 (404)
-..|++|+++++.++..--..+..+++|++|+|++|. ++ +.--..+..+ ++|++|++++|. +
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It------------D~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE------------DGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC------------HHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC------------HHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 4578888888888765555566778888888888885 44 1112233443 368888888874 7
Q ss_pred ccccCccccC-CcccEEEcccCc
Q 046992 154 SGSLPLSIGN-LTLSFLVLDTNQ 175 (404)
Q Consensus 154 ~~~~~~~~~~-~~L~~L~l~~n~ 175 (404)
++..-..+.. ++|++|++++|.
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCT
T ss_pred CHHHHHHHhcCCCCCEEECCCCC
Confidence 6544445555 788888888875
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.46 E-value=0.00011 Score=57.18 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCCEEECCCCcCcccCCCC-cccCCCChhhhccCcCCCCCC
Q 046992 330 GLSGIDMSYNELEGSTPNS-AVFRDAPLAALQKNKRLCSNV 369 (404)
Q Consensus 330 ~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 369 (404)
+|+.|+|++|+|+...+.. ..+++++.+++.+|||.|+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555555555555433322 344555555566666666553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.00022 Score=59.42 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCCCCcEEEcCCC-CCCCc----ccccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCCcCC
Q 046992 55 QLKSLFELDLSLN-QLSGS----IFLSWVTLSNFSRVYIYDNLLSGT----ISPFIGNLTSLVDLQLNSNQLI 118 (404)
Q Consensus 55 ~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 118 (404)
+-+.|++|+|++| .|... +..++..-+.|++|+|++|.+... +.+.+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444555555543 44321 223333344455555555554321 1222223344555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.82 E-value=0.00054 Score=57.11 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=40.3
Q ss_pred CCCCCCEEeCcccccccccCcccc----C-CcccEEEcccCcCccCCC-----ccCCCCCCCEEECCCCcc---cCCCch
Q 046992 139 NLTNLRKLFLRHNNLSGSLPLSIG----N-LTLSFLVLDTNQFTSYVP-----NICHSGLLEKYTNGNNRF---LGPIPK 205 (404)
Q Consensus 139 ~l~~L~~L~l~~n~i~~~~~~~~~----~-~~L~~L~l~~n~l~~~~~-----~l~~~~~L~~L~l~~n~~---~~~~~~ 205 (404)
.-+.|++|+|++|.+.+.....+. . ..|+.|+|+.|.|..... .+..-..|+.|++++|.. ......
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 334455555555554432222222 1 445555555555543211 334445566666654422 211111
Q ss_pred hhhcCCCCCccccccCCCccEEeCCCccc
Q 046992 206 SLRNCISLTTAYFAFYATLTFLDLSHNNF 234 (404)
Q Consensus 206 ~~~~l~~L~~~~~~~~~~L~~L~l~~n~l 234 (404)
.+.. .+..-+.|+.|+++.|.+
T Consensus 148 ~ia~-------aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 148 DMMM-------AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHH-------HHHHCSSCCEEECCCCCH
T ss_pred HHHH-------HHHhCCCcCeEeccCCCc
Confidence 2211 134556777777776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.63 E-value=0.0032 Score=48.80 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=37.8
Q ss_pred EEEcCCCcCC-CCCchhccCCCCCCeEeCCCCcccccccccccceecCCCcCcccCchhhccCCCCCEEECCCCcCccc
Q 046992 267 KLTLRENQLS-GHLPRGLNSLIQLEYLDLSANSFSQSIPELCNLLNTAYNNLSSLIPKCFEKMHGLSGIDMSYNELEGS 344 (404)
Q Consensus 267 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 344 (404)
.++-+++.++ ..+|..+ .++|++|+|++|.|+ .+.+..|..+++|+.|+|++|++...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~------------------~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT------------------ALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS------------------SCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC------------------ccChhhhhhccccCEEEecCCCeecc
Confidence 5566666554 2344321 124666666666555 44566789999999999999999653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.91 E-value=15 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCCcccccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcC
Q 046992 69 LSGSIFLSWVTLSNFSRVYIYDNLLSGTISPFIGNLTSLVDLQLNS 114 (404)
Q Consensus 69 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (404)
++.+...+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444456666666666666554 2324445666666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.49 E-value=36 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=30.7
Q ss_pred cccccCCccccCCCCCCEEECcCCcCCCCCccCCCCcccccCCccccCCCCCCEEeCccc
Q 046992 92 LLSGTISPFIGNLTSLVDLQLNSNQLIGHIPNLRQNQFRGFLPSSIGNLTNLRKLFLRHN 151 (404)
Q Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 151 (404)
.++.+-..+|.++++|+.+.+..+--. .-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v~~-------------Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNIGL-------------LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTSSC-------------CCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCchhe-------------EcHHHHhccCCccEEEEcCC
Confidence 344455567788888888887665322 23456777888888777653
Done!