BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046996
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
Query: 26 PGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVP 85
PGFRF+PT+EEL+ YL RK G F+++LI +DLY++DPW LP A GEKEW+F+ P
Sbjct: 19 PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78
Query: 86 RDRKYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIM 145
RDRKY NG RPNRV SGYWKATG D++I +E R +G+KK LVFY GKAPKG +T+WIM
Sbjct: 79 RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIM 137
Query: 146 NEYRL--PQHETERYQKAEISLCRVYKR 171
+EYRL P + + LCR+YK+
Sbjct: 138 HEYRLIEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
Query: 26 PGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVP 85
PGFRF+PT+EEL+ YL RK G F+++LI +DLY++DPW LP A GEKEW+F+ P
Sbjct: 22 PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 81
Query: 86 RDRKYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIM 145
RDRKY NG RPNRV SGYWKATG D++I +E R +G+KK LVFY GKAPKG +T+WIM
Sbjct: 82 RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIM 140
Query: 146 NEYRL--PQHETERYQKAEISLCRVYKR 171
+EYRL P + + LCR+YK+
Sbjct: 141 HEYRLIEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 106/153 (69%), Gaps = 8/153 (5%)
Query: 26 PGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVP 85
PGFRFHPT++ELVE YL RK G+R V +I +DLY++DPW+LP A G +EW+F+ P
Sbjct: 17 PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP 76
Query: 86 RDRKYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIM 145
RDRKY NG RPNR +GYWKATGAD+ + + R++G+KK LVFY+GKAP+G++T WIM
Sbjct: 77 RDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRGVKTDWIM 135
Query: 146 NEYRLPQHETERYQKAEIS-------LCRVYKR 171
+EYRL + S LCR+Y +
Sbjct: 136 HEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
pdb|2CGH|B Chain B, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
Length = 268
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 218 RFQALSGQSSQQQMDIAAEKMSTNTDQTDRSSSCSDVTTVL 258
R Q + S +Q+D+ A+ STN D R++S +D+ V+
Sbjct: 19 RDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVV 59
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L1A|B Chain B, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L2Z|A Chain A, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
pdb|3L2Z|B Chain B, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
Length = 266
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 218 RFQALSGQSSQQQMDIAAEKMSTNTDQTDRSSSCSDVTTVL 258
R Q + S +Q+D+ A+ STN D R++S +D+ V+
Sbjct: 17 RDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVV 57
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
pdb|3RUX|B Chain B, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
Length = 270
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 218 RFQALSGQSSQQQMDIAAEKMSTNTDQTDRSSSCSDVTTVL 258
R Q + S +Q+D+ A+ STN D R++S +D+ V+
Sbjct: 21 RDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVV 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,016,557
Number of Sequences: 62578
Number of extensions: 312542
Number of successful extensions: 1619
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 15
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)