Query 046996
Match_columns 364
No_of_seqs 159 out of 941
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.5E-54 2.6E-58 386.7 15.3 153 20-173 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 3.3E-53 1.1E-57 381.4 13.5 153 20-173 13-167 (171)
3 1cmb_A Met APO-repressor; DNA- 20.0 98 0.0034 25.1 3.8 39 31-73 50-88 (104)
4 3nr5_A MAF1, repressor of RNA 17.9 31 0.0011 30.6 0.4 12 56-67 119-130 (164)
5 2c4b_A Barnase mcoeeti fusion; 17.4 86 0.0029 27.2 3.1 33 33-68 4-38 (143)
6 1ldd_A APC2WHB, anaphase promo 16.5 64 0.0022 24.9 1.9 27 24-51 36-63 (74)
7 3iot_A Maltose-binding protein 15.8 73 0.0025 30.4 2.6 46 318-364 364-409 (449)
8 4dox_A Coat protein; all helix 12.6 79 0.0027 29.3 1.7 30 17-46 147-177 (226)
9 3cpr_A Dihydrodipicolinate syn 10.3 93 0.0032 29.2 1.4 18 24-42 118-135 (304)
10 3fkr_A L-2-keto-3-deoxyarabona 9.3 1.3E+02 0.0045 28.2 2.0 19 24-43 110-131 (309)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.5e-54 Score=386.74 Aligned_cols=153 Identities=52% Similarity=1.070 Sum_probs=134.8
Q ss_pred CCCCCCCCceecCChHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCccccccCCceeEEEEeecCCcCCCCCCCccc
Q 046996 20 EHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRV 99 (364)
Q Consensus 20 ~~~~LPPGfRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePwdLP~~~~~Ge~eWYFFspr~rK~~nG~R~~R~ 99 (364)
....|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+||+.+..|+++||||+++++||++|.|++|+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence 34579999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred cccceEeecCCCceEecCCCceEEEEEEEEeecCCCCCCCCcCeEEEEEecCCCCccc-------ccCCcEEEEEEEecC
Q 046996 100 TTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETER-------YQKAEISLCRVYKRP 172 (364)
Q Consensus 100 tggG~WK~tG~~k~I~~~~G~vVG~KKtL~Fy~Gk~pkg~kTgWvMhEY~L~~~~~~~-------~~~~e~VLCRIykK~ 172 (364)
+++||||++|++++|... |.+||+||+|+||.|+++++.||+|+||||+|....... ...++|||||||+|+
T Consensus 91 t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp ETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred cCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 999999999999999864 789999999999999999999999999999998754321 245789999999986
Q ss_pred C
Q 046996 173 G 173 (364)
Q Consensus 173 ~ 173 (364)
+
T Consensus 170 ~ 170 (174)
T 3ulx_A 170 N 170 (174)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.3e-53 Score=381.43 Aligned_cols=153 Identities=54% Similarity=1.045 Sum_probs=131.4
Q ss_pred CCCCCCCCceecCChHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCccccccCCceeEEEEeecCCcCCCCCCCccc
Q 046996 20 EHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRV 99 (364)
Q Consensus 20 ~~~~LPPGfRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePwdLP~~~~~Ge~eWYFFspr~rK~~nG~R~~R~ 99 (364)
....|||||||+|||||||.+||++|+.|.+++.++|+++|||.+|||+||+....++++||||+++++|+++|.|++|+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEE
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccccc
Confidence 34679999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred cccceEeecCCCceEecCCCceEEEEEEEEeecCCCCCCCCcCeEEEEEecCCCCcc--cccCCcEEEEEEEecCC
Q 046996 100 TTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETE--RYQKAEISLCRVYKRPG 173 (364)
Q Consensus 100 tggG~WK~tG~~k~I~~~~G~vVG~KKtL~Fy~Gk~pkg~kTgWvMhEY~L~~~~~~--~~~~~e~VLCRIykK~~ 173 (364)
+++||||++|+++.|... +.+||+||+|+||.|+++++.||+|+||||+|...... ....++|||||||+|++
T Consensus 93 t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~ 167 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167 (171)
T ss_dssp ETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC-
T ss_pred CCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCC
Confidence 999999999999999974 69999999999999999999999999999999875421 13467999999999854
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.00 E-value=98 Score=25.08 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=32.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCccccc
Q 046996 31 HPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALA 73 (364)
Q Consensus 31 ~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePwdLP~~~ 73 (364)
|-|..||++.-...-..|+|||.+ -|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568889998877788899999874 688899999998654
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=17.91 E-value=31 Score=30.56 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=10.5
Q ss_pred eeeccCCCCCCC
Q 046996 56 ITFLDLYRYDPW 67 (364)
Q Consensus 56 I~evDVY~~ePw 67 (364)
+.+||||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 567899999998
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=17.37 E-value=86 Score=27.23 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCccceee--ccCCCCCCCC
Q 046996 33 TEEELVEFYLRRKVEGKRFNVELITF--LDLYRYDPWE 68 (364)
Q Consensus 33 TDEELV~~YLr~Ki~G~plp~~~I~e--vDVY~~ePwd 68 (364)
|+.+-|..||.. ...||..+|.. ++--+-+|-+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCc
Confidence 455667778877 34567776644 4555667743
No 6
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.48 E-value=64 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCCCceecC-ChHHHHHHHHHHHHcCCCC
Q 046996 24 VMPGFRFHP-TEEELVEFYLRRKVEGKRF 51 (364)
Q Consensus 24 LPPGfRF~P-TDEELV~~YLr~Ki~G~pl 51 (364)
.|.|+.|.. |++||-. ||-+|+....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 366999998 8888887 59999987654
No 7
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=15.85 E-value=73 Score=30.44 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhhchhhhhhhhhccCCcccCCCCCCCCCCCCCCCC
Q 046996 318 ATDEFHRLLAYQQASMNHQQQYYNYQHHHQQQQHHSHFPQLPPQSQP 364 (364)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
+.+++++++.+.-- ..+||+|--.|..+|+++....-.+-+++++|
T Consensus 364 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (449)
T 3iot_A 364 AQTNAAAMATLEKL-MKAFESLKSFQQQQQQQQQQQQQQQQQPPPPP 409 (449)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTC---------------------
T ss_pred HHHHHHHHhhhHHH-HHHHHHHHhhccccccccCCCCCCCCCCCCCC
No 8
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=12.57 E-value=79 Score=29.32 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred CCCCCCCCCC-CceecCChHHHHHHHHHHHH
Q 046996 17 DDHEHDVVMP-GFRFHPTEEELVEFYLRRKV 46 (364)
Q Consensus 17 ~~~~~~~LPP-GfRF~PTDEELV~~YLr~Ki 46 (364)
+....-+-|+ |..+.||++|+|.+=..+++
T Consensus 147 V~n~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 147 VENPAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTCTTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3344445555 89999999999998555544
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=10.26 E-value=93 Score=29.18 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=14.4
Q ss_pred CCCCceecCChHHHHHHHH
Q 046996 24 VMPGFRFHPTEEELVEFYL 42 (364)
Q Consensus 24 LPPGfRF~PTDEELV~~YL 42 (364)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 568999999999974
No 10
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=9.29 E-value=1.3e+02 Score=28.24 Aligned_cols=19 Identities=37% Similarity=0.850 Sum_probs=14.5
Q ss_pred CCCCce---ecCChHHHHHHHHH
Q 046996 24 VMPGFR---FHPTEEELVEFYLR 43 (364)
Q Consensus 24 LPPGfR---F~PTDEELV~~YLr 43 (364)
+|| |. |.||+++|+.||-.
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHHH
T ss_pred cCC-CCccCCCCCHHHHHHHHHH
Confidence 455 54 89999999998643
Done!