Your job contains 1 sequence.
>046997
MAGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHML
MTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVL
WLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVD
ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH
ESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKY
PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQE
QIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYEL
VVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVH
GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN
TRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC
FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGC
LAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGG
CDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFS
GSRNARANGMNPQSGMTAEVLFSHHFL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046997
(807 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160841 - symbol:TOP3A "topoisomerase 3alpha" ... 3265 0. 2
MGI|MGI:1197527 - symbol:Top3a "topoisomerase (DNA) III a... 1747 3.7e-185 2
UNIPROTKB|Q13472 - symbol:TOP3A "DNA topoisomerase 3-alph... 1741 1.6e-184 2
UNIPROTKB|E2RIS5 - symbol:TOP3A "DNA topoisomerase" speci... 1750 2.6e-184 2
UNIPROTKB|F1MGY1 - symbol:TOP3A "DNA topoisomerase" speci... 1731 2.9e-183 2
UNIPROTKB|F1P1F3 - symbol:TOP3A "DNA topoisomerase" speci... 1733 1.7e-178 1
ZFIN|ZDB-GENE-071212-2 - symbol:top3a "topoisomerase (DNA... 1677 2.8e-176 2
RGD|1309320 - symbol:Top3a "topoisomerase (DNA) III alpha... 1616 4.2e-166 1
UNIPROTKB|B4DK80 - symbol:TOP3A "DNA topoisomerase" speci... 1553 1.2e-164 2
DICTYBASE|DDB_G0275257 - symbol:top3 "DNA topoisomerase I... 943 3.9e-155 2
FB|FBgn0040268 - symbol:Top3alpha "Topoisomerase 3alpha" ... 1442 2.8e-152 2
GENEDB_PFALCIPARUM|PF13_0251 - symbol:PF13_0251 "DNA topo... 743 3.5e-137 2
UNIPROTKB|Q8IDM7 - symbol:PF13_0251 "DNA topoisomerase II... 743 3.5e-137 2
WB|WBGene00006596 - symbol:top-3 species:6239 "Caenorhabd... 1268 3.2e-129 1
POMBASE|SPBC16G5.12c - symbol:top3 "DNA topoisomerase III... 1175 2.3e-119 1
ASPGD|ASPL0000072189 - symbol:AN4555 species:162425 "Emer... 1166 2.0e-118 1
CGD|CAL0003329 - symbol:orf19.5934 species:5476 "Candida ... 1124 5.8e-114 1
MGI|MGI:1333803 - symbol:Top3b "topoisomerase (DNA) III b... 1003 2.4e-110 2
RGD|1309468 - symbol:Top3b "topoisomerase (DNA) III beta"... 1002 2.4e-110 2
TAIR|locus:2045517 - symbol:AT2G32000 species:3702 "Arabi... 1015 8.0e-110 2
UNIPROTKB|O95985 - symbol:TOP3B "DNA topoisomerase 3-beta... 995 7.1e-109 2
SGD|S000004224 - symbol:TOP3 "DNA Topoisomerase III" spec... 726 1.5e-108 2
UNIPROTKB|F1RL05 - symbol:TOP3B "DNA topoisomerase" speci... 984 8.1e-108 2
UNIPROTKB|E2R770 - symbol:TOP3B "DNA topoisomerase" speci... 973 2.4e-106 2
UNIPROTKB|Q5ZK71 - symbol:TOP3B "DNA topoisomerase" speci... 971 1.3e-105 2
UNIPROTKB|E1BQG8 - symbol:TOP3B "DNA topoisomerase" speci... 962 1.2e-104 2
ZFIN|ZDB-GENE-070705-37 - symbol:top3b "topoisomerase (DN... 974 4.5e-98 1
UNIPROTKB|H7BZN5 - symbol:TOP3A "DNA topoisomerase" speci... 964 5.2e-97 1
FB|FBgn0026015 - symbol:Top3beta "Topoisomerase 3beta" sp... 927 4.3e-93 1
WB|WBGene00012995 - symbol:Y48C3A.14 species:6239 "Caenor... 899 4.0e-90 1
UNIPROTKB|B4DSJ0 - symbol:TOP3A "cDNA FLJ56242, highly si... 617 7.7e-66 2
UNIPROTKB|H0Y6W0 - symbol:TOP3B "DNA topoisomerase" speci... 601 1.5e-58 1
UNIPROTKB|C9JEI7 - symbol:TOP3B "DNA topoisomerase 3-beta... 499 3.8e-47 1
TIGR_CMR|GSU_2549 - symbol:GSU_2549 "DNA topoisomerase I"... 351 8.0e-33 2
UNIPROTKB|E7EWY2 - symbol:TOP3B "DNA topoisomerase" speci... 364 1.9e-32 1
TIGR_CMR|BA_3971 - symbol:BA_3971 "DNA topoisomerase I" s... 349 1.7e-28 1
TIGR_CMR|SPO_3079 - symbol:SPO_3079 "DNA topoisomerase I"... 247 1.7e-28 2
TIGR_CMR|BA_1905 - symbol:BA_1905 "DNA topoisomerase III"... 306 3.5e-27 2
UNIPROTKB|K7EMT6 - symbol:TOP3A "DNA topoisomerase 3-alph... 314 4.5e-27 1
TIGR_CMR|CHY_1794 - symbol:CHY_1794 "DNA topoisomerase I"... 298 4.4e-26 3
UNIPROTKB|F2Z2A5 - symbol:TOP3B "DNA topoisomerase 3-beta... 291 1.3e-24 1
TIGR_CMR|CJE_1854 - symbol:CJE_1854 "DNA topoisomerase I"... 295 4.6e-24 3
TIGR_CMR|CBU_2000 - symbol:CBU_2000 "DNA topoisomerase I"... 264 3.8e-23 2
UNIPROTKB|P06612 - symbol:topA species:83333 "Escherichia... 300 6.6e-23 1
UNIPROTKB|Q9KRB2 - symbol:topA "DNA topoisomerase 1" spec... 290 8.2e-22 2
TIGR_CMR|VC_1730 - symbol:VC_1730 "DNA topoisomerase I" s... 290 8.2e-22 2
UNIPROTKB|C9JT00 - symbol:TOP3B "DNA topoisomerase 3-beta... 265 8.2e-22 1
TIGR_CMR|BA_0375 - symbol:BA_0375 "DNA topoisomerase III"... 275 1.6e-21 2
TIGR_CMR|ECH_0750 - symbol:ECH_0750 "DNA topoisomerase I"... 285 2.5e-21 1
UNIPROTKB|C9JKE2 - symbol:TOP3B "DNA topoisomerase 3-beta... 259 3.6e-21 1
TIGR_CMR|APH_0597 - symbol:APH_0597 "DNA topoisomerase I"... 295 4.0e-21 2
UNIPROTKB|P14294 - symbol:topB species:83333 "Escherichia... 261 1.8e-20 2
TIGR_CMR|SO_2705 - symbol:SO_2705 "DNA topoisomerase I" s... 270 1.1e-18 2
TIGR_CMR|CPS_1197 - symbol:CPS_1197 "DNA topoisomerase I"... 260 1.5e-18 1
UNIPROTKB|Q9KQF5 - symbol:topB "DNA topoisomerase 3" spec... 248 1.7e-17 1
TIGR_CMR|VC_2043 - symbol:VC_2043 "DNA topoisomerase III"... 248 1.7e-17 1
UNIPROTKB|P0A620 - symbol:topA "DNA topoisomerase 1" spec... 227 6.0e-17 2
UNIPROTKB|H7C4B0 - symbol:TOP3B "DNA topoisomerase" speci... 218 9.0e-17 1
TIGR_CMR|DET_0717 - symbol:DET_0717 "DNA topoisomerase I"... 219 1.4e-15 3
TIGR_CMR|SO_3061 - symbol:SO_3061 "DNA topoisomerase III"... 221 1.3e-14 2
UNIPROTKB|J3QR18 - symbol:TOP3A "DNA topoisomerase 3-alph... 188 1.5e-13 1
TIGR_CMR|NSE_0594 - symbol:NSE_0594 "DNA topoisomerase I"... 222 1.9e-13 2
UNIPROTKB|K7ELI7 - symbol:TOP3A "DNA topoisomerase 3-alph... 181 8.2e-13 1
TIGR_CMR|CPS_4792 - symbol:CPS_4792 "DNA topoisomerase II... 174 1.9e-10 2
UNIPROTKB|D4A4A6 - symbol:D4A4A6 "Uncharacterized protein... 134 3.3e-10 2
UNIPROTKB|J3QS25 - symbol:TOP3A "DNA topoisomerase 3-alph... 122 1.7e-06 1
UNIPROTKB|J3KS96 - symbol:TOP3A "DNA topoisomerase 3-alph... 117 5.7e-06 1
UNIPROTKB|C9J9X4 - symbol:TOP3B "DNA topoisomerase 3-beta... 112 2.0e-05 1
UNIPROTKB|C9JEQ1 - symbol:TOP3B "DNA topoisomerase 3-beta... 111 2.5e-05 1
>TAIR|locus:2160841 [details] [associations]
symbol:TOP3A "topoisomerase 3alpha" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA;ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 PROSITE:PS50158 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007067
GO:GO:0008270 GO:GO:0006281 GO:GO:0000712 EMBL:AB019227
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:KPRKCSL
HSSP:P14294 EMBL:EU295446 IPI:IPI00517152 RefSeq:NP_201197.1
UniGene:At.28974 ProteinModelPortal:Q9LVP1 SMR:Q9LVP1 PaxDb:Q9LVP1
PRIDE:Q9LVP1 EnsemblPlants:AT5G63920.1 GeneID:836513
KEGG:ath:AT5G63920 TAIR:At5g63920 InParanoid:Q9LVP1
PhylomeDB:Q9LVP1 ProtClustDB:CLSN2686218 Genevestigator:Q9LVP1
Uniprot:Q9LVP1
Length = 926
Score = 3265 (1154.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 610/796 (76%), Positives = 683/796 (85%)
Query: 4 GGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTS 63
GG P+ VLNVAEKPSVAKSVAGILS+ R REGRSRYNKI+EF+Y+I GQPC MLMTS
Sbjct: 5 GGGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTS 63
Query: 64 VTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
V GHLMEL+F +RYRKWHSCDPADLY APV KHVPEDKKDIKKTLEEEAR+ WLVLWLD
Sbjct: 64 VIGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLD 123
Query: 124 CDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
CDREGENIAFEV++VCRAV +L +RRA FSALIDR+IH+AVQNL DPNQ FA+AVDARQ
Sbjct: 124 CDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQ 183
Query: 184 EIDLRIGASFTRFQTMLLKN-FHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLRIGASFTRFQTMLL++ F IDS ++R+ V+SYGPCQFPTLGF+VERYWEIQAHE
Sbjct: 184 EIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEP 243
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKV-RQQEKLKYP 301
EEFWTINCSH+SEEG ATF+WMRGHLFDY SAVI+YEMCV+EPTATV V +E+ KYP
Sbjct: 244 EEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYP 303
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
PYPL+TIELEKRASRYFR+SSEHTMKVAE+LYQAGFISYPRTETDSFSS T+L +V+EQ
Sbjct: 304 PYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAMVEEQ 363
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
HP WG YAQRLL+ GLWRNP +GGHDDKAHPPIHPTKFSSGES WS+DH +YELV
Sbjct: 364 TRHPAWGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELV 423
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHG 481
VRH+LACVSQPAV AET VEI+IAGE FS SGR ILAKNYL+VYRFESWGG VIP Y G
Sbjct: 424 VRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKG 483
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
QQFIPTTLTLD+ VTRPPPLL EADLLSCMDKAGIGTDATMHDHIKKLLDR YA KDANT
Sbjct: 484 QQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANT 543
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
RF+PTN+GEALVMGYDDMGYELWKPNLR++ME DM EVSVG K+KA+VL CLQQMKACF
Sbjct: 544 RFSPTNLGEALVMGYDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACF 603
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQ--QAAGEVVRQCGICQESNMVLKKSRDGNLMVG 659
LDAR+KK KLLEAM IFFER + ++ Q AGEVVR+C +C ES+M L+K+RDGN MVG
Sbjct: 604 LDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMVG 663
Query: 660 CLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIG 719
C+ +PQCRNAVWLPG EA+VTTN C SC PGPVY I FKFRQ IPPGF+VNHLGC+G
Sbjct: 664 CMNYPQCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGFDVNHLGCVG 723
Query: 720 GCDETLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ-RACIYCQQMGHSSSDCPSQ 778
GCD+ L+QLI+ICGTGSR AR TA SNN Q SN RQ CI+CQQ GH+S++CPS+
Sbjct: 724 GCDDILKQLIDICGTGSRSQARRTPGTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCPSR 783
Query: 779 FSGSRNARANGMNPQS 794
SRN+R NP++
Sbjct: 784 VPASRNSRPTATNPRN 799
Score = 44 (20.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 741 RGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRN 784
RG G + S G+ + + C C H ++ CP++ + + N
Sbjct: 883 RGSGTSFVSATGEPVSGIR--CFSCGDPSHFANACPNRNNSNGN 924
>MGI|MGI:1197527 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 MGI:MGI:1197527
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0046872 GO:GO:0016605 GO:GO:0008270 Reactome:REACT_120463
Reactome:REACT_27235 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 CTD:7156 HOGENOM:HOG000184377 HOVERGEN:HBG056668
OMA:KPRKCSL EMBL:AB006074 IPI:IPI00115672 PIR:T13951
RefSeq:NP_033436.1 UniGene:Mm.477819 ProteinModelPortal:O70157
SMR:O70157 IntAct:O70157 STRING:O70157 PhosphoSite:O70157
PRIDE:O70157 Ensembl:ENSMUST00000002891 GeneID:21975 KEGG:mmu:21975
InParanoid:O70157 NextBio:301678 Bgee:O70157 CleanEx:MM_TOP3A
Genevestigator:O70157 GermOnline:ENSMUSG00000002814 Uniprot:O70157
Length = 1003
Score = 1747 (620.0 bits), Expect = 3.7e-185, Sum P(2) = 3.7e-185
Identities = 350/747 (46%), Positives = 486/747 (65%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 36 VLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E CQ LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFIDIKKTLERETHHCQALVIWTDCDREGE 154
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRI
Sbjct: 155 NIGFEIIHVCKAVKPNLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRI 214
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 215 GAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIK 271
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+E
Sbjct: 272 VTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVE 331
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 332 LEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLNLVALVEQQTVDPHWGA 391
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQ +L+ RN G D+AHPPIHPTK++SG D +LYE +VRHFLAC
Sbjct: 392 FAQTILERGGPTPRN---GSKSDQAHPPIHPTKYTSG---LQGDDRRLYEFIVRHFLACC 445
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T+
Sbjct: 446 SQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGSHFQPSTV 505
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++G
Sbjct: 506 EMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLG 565
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 566 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKAK 625
Query: 610 KLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C+ FP+
Sbjct: 626 KLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCMGFPE 684
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ + C+ C P PVY ++ KF++ +PP + +GCIGGCDETL
Sbjct: 685 CRSAVWFPDSVLEASRDNSVCSVCQPPPVYRLKLKFKRGSLPPAMPLEFVGCIGGCDETL 744
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNG 752
+++ G R P R P AS +G
Sbjct: 745 KEIF-----GLRFP-RAL-PRASQPSG 764
Score = 71 (30.1 bits), Expect = 3.7e-185, Sum P(2) = 3.7e-185
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 733 GTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
G R A + P A S++ + + R C C Q GH+ + CP
Sbjct: 957 GKAQRPEAASKRPRAGSSDAGSTVKKPRKCSLCHQPGHTRTFCP 1000
>UNIPROTKB|Q13472 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016605 "PML body"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007126 GO:GO:0005694 GO:GO:0046872 GO:GO:0016605
GO:GO:0008270 Reactome:REACT_111183 EMBL:CH471196 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 EMBL:U43431 EMBL:HQ205026
EMBL:HQ205027 EMBL:HQ205028 EMBL:HQ205029 EMBL:HQ205030
EMBL:HQ205031 EMBL:HQ205032 EMBL:HQ205033 EMBL:HQ205034
EMBL:HQ205035 EMBL:HQ205036 EMBL:HQ205037 EMBL:HQ205038
EMBL:HQ205039 EMBL:HQ205040 EMBL:HQ205041 EMBL:HQ205042
EMBL:HQ205043 EMBL:HQ205044 EMBL:HQ205045 EMBL:HQ205046
EMBL:HQ205047 EMBL:HQ205048 EMBL:HQ205049 EMBL:HQ205050
EMBL:HQ205051 EMBL:HQ205052 EMBL:HQ205053 EMBL:HQ205054
EMBL:HQ205055 EMBL:HQ205056 EMBL:HQ205057 EMBL:HQ205058
EMBL:HQ205059 EMBL:HQ205060 EMBL:HQ205061 EMBL:HQ205062
EMBL:HQ205063 EMBL:HQ205064 EMBL:HQ205065 EMBL:AK292926
EMBL:BC051748 IPI:IPI00013378 IPI:IPI00221295 RefSeq:NP_004609.1
UniGene:Hs.592115 ProteinModelPortal:Q13472 SMR:Q13472
DIP:DIP-33323N IntAct:Q13472 MINT:MINT-6610291 STRING:Q13472
PhosphoSite:Q13472 DMDM:2501242 PaxDb:Q13472 PRIDE:Q13472
Ensembl:ENST00000321105 Ensembl:ENST00000580095 GeneID:7156
KEGG:hsa:7156 UCSC:uc002gsx.1 CTD:7156 GeneCards:GC17M018175
HGNC:HGNC:11992 HPA:CAB002449 MIM:601243 neXtProt:NX_Q13472
PharmGKB:PA36673 HOGENOM:HOG000184377 HOVERGEN:HBG056668
InParanoid:Q13472 OMA:KPRKCSL OrthoDB:EOG4K6G3F PhylomeDB:Q13472
GenomeRNAi:7156 NextBio:28002 ArrayExpress:Q13472 Bgee:Q13472
CleanEx:HS_TOP3A Genevestigator:Q13472 GermOnline:ENSG00000177302
Uniprot:Q13472
Length = 1001
Score = 1741 (617.9 bits), Expect = 1.6e-184, Sum P(2) = 1.6e-184
Identities = 347/751 (46%), Positives = 487/751 (64%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 36 VLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 154
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRI
Sbjct: 155 NIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRI 214
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 215 GAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIK 271
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H ++G F+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+E
Sbjct: 272 VTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVE 331
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 332 LEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGA 391
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQ +L+ RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC
Sbjct: 392 FAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTNN---LQGDEQRLYEFIVRHFLACC 445
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T+
Sbjct: 446 SQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTV 505
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G
Sbjct: 506 EMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLG 565
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 566 MGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAK 625
Query: 610 KLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q+ A E +R+C C + +MVLK ++G + C+ FP+
Sbjct: 626 KLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPE 684
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVWLP SV EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+TL
Sbjct: 685 CRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTL 744
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
R+++++ +G P R P+ Q N
Sbjct: 745 REILDLRFSGG--PPRASQPSGRLQANQSLN 773
Score = 71 (30.1 bits), Expect = 1.6e-184, Sum P(2) = 1.6e-184
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 740 ARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
AR + P ASS++ + + R C C Q GH+ CP
Sbjct: 962 ARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCP 998
>UNIPROTKB|E2RIS5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:7156 OMA:KPRKCSL
EMBL:AAEX03003715 RefSeq:XP_546656.2 Ensembl:ENSCAFT00000029019
GeneID:489537 KEGG:cfa:489537 NextBio:20862709 Uniprot:E2RIS5
Length = 989
Score = 1750 (621.1 bits), Expect = 2.6e-184, Sum P(2) = 2.6e-184
Identities = 348/754 (46%), Positives = 491/754 (65%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 36 ILCVAEKNDAAKGIADLLS-NGRMRRREGFSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF ++RKW SC+P L+ A + K+ PE+ IKKTL+ E ++CQ LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVGIKKTLQRETQQCQALVIWTDCDREGE 154
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VCRAV +L + RARFS + R + A +NL +P+Q +DAVD RQE+DLRI
Sbjct: 155 NIGFEIIHVCRAVKPNLQVLRARFSEITPRAVRVACENLTEPDQRVSDAVDVRQELDLRI 214
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 215 GAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHKIK 271
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H ++G F+W R LF++T+ +++Y++C+++PTATV +VR + K K+ P L T+E
Sbjct: 272 VTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCMEDPTATVVEVRSKSKSKWRPQALDTVE 331
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++Q P WG
Sbjct: 332 LEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLTVLVEQQTPDPRWGA 391
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQ +L+ RN G D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 392 FAQSILERGGPTPRN---GNKSDQAHPPIHPTKYTSS---LQGDEQRLYEFIVRHFLACC 445
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T+
Sbjct: 446 SQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYERGSHFQPSTV 505
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++G
Sbjct: 506 EMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTADKRFLPGHLG 565
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A K
Sbjct: 566 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLRQQVQKYKQVFIEAVAKAK 625
Query: 610 KLLEAMGIFFERWSGGEDQQAA----GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ +F + Q+A E +++C C + +MVLK ++G + C FP+
Sbjct: 626 KLDEALSQYFGEGTEVAQQEAIYPSMPEPIKKCPQCNK-DMVLKTKKNGGFYLSCTGFPE 684
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ + C C P PVY ++ KF++ +PP + +GCIGGCDETL
Sbjct: 685 CRSAVWFPDSVLEASRDDSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVGCIGGCDETL 744
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQ 759
R+++++ SR P R P + +N Q++ Q
Sbjct: 745 REILDL--RFSRGPPRASQPASQPSNYLQASQSQ 776
Score = 60 (26.2 bits), Expect = 2.6e-184, Sum P(2) = 2.6e-184
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 740 ARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
AR + ASS + + + R C C Q GH+ CP
Sbjct: 950 ARSKRARASSADMGSTPKKPRKCSLCHQPGHTRPFCP 986
>UNIPROTKB|F1MGY1 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9913 "Bos taurus"
[GO:0016605 "PML body" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0016605
GO:GO:0008270 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:KPRKCSL EMBL:DAAA02048987 EMBL:DAAA02048988 IPI:IPI00827029
UniGene:Bt.103042 Ensembl:ENSBTAT00000022721 Uniprot:F1MGY1
Length = 1002
Score = 1731 (614.4 bits), Expect = 2.9e-183, Sum P(2) = 2.9e-183
Identities = 351/746 (47%), Positives = 482/746 (64%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L VAEK AK +A +LS + +R REG SR+NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 36 ILCVAEKNDAAKGIADLLSGGR-MRRREGLSRFNKIYEFDYHLCGQNVTMVMTSVSGHLL 94
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE EA++CQ LV+W DCDREGE
Sbjct: 95 AHDFRMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLEREAQQCQALVIWTDCDREGE 154
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FEVI VC+AV L + RARFS + R + A +NL +P+Q +DAVD RQE+DLRI
Sbjct: 155 NIGFEVIHVCKAVKPSLQVLRARFSEITTRAVRTACENLTEPDQRVSDAVDVRQELDLRI 214
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 215 GAAFTRFQTLRLQKIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIR 271
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H +G FSW R LF++T+ +++Y+MC+++P A V +VR + K K+ P L T+E
Sbjct: 272 VTHDHRDGVVEFSWKRHRLFNHTACLVLYQMCMEDPRAMVVEVRSKAKSKWRPQALDTVE 331
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TM++AE LY G+ISYPRTET+ F +L +V++Q P WG
Sbjct: 332 LEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPKDLDLAALVEQQTPDPRWGA 391
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A+ +L+ RN G D+AHPPIHPTK++ D +LYEL+VRHFLAC
Sbjct: 392 FARNILERGGPTPRN---GNKSDQAHPPIHPTKYTDS---LQGDEQRLYELIVRHFLACC 445
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W +P Y G F P+T+
Sbjct: 446 SQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDRWSDKTLPVYEQGTCFQPSTV 505
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G
Sbjct: 506 EMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLG 565
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 566 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKLVVLHQQVQKYKQVFIEAVAKAR 625
Query: 610 KLLEAMGIFFERWSGGEDQQA---AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC 666
KL EA+ +F + Q A E +R+C C +MVLK + G +GC FP+C
Sbjct: 626 KLDEALSQYFGAATEVAPQDALPAVPEPIRKCPQCSR-DMVLKTRKSGGFYLGCTGFPEC 684
Query: 667 RNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLR 726
R+AVW P SV EA+ + C C P PVY ++FKF++ +PP + +GCIGGCDETLR
Sbjct: 685 RSAVWFPDSVLEASRDVSVCPVCQPHPVYRLKFKFKRGSLPPTMPLEFVGCIGGCDETLR 744
Query: 727 QLIEICGTGSRIPARGRGPTASSNNG 752
+++ + S+ AR P AS +G
Sbjct: 745 EILAL--RFSQGAARVSQP-ASQTSG 767
Score = 69 (29.3 bits), Expect = 2.9e-183, Sum P(2) = 2.9e-183
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 738 IPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
+ AR + P A S++ + + R C C Q GH+ CP
Sbjct: 961 LEARSKRPRAGSSDTGSAAKKPRKCSLCHQPGHTRPFCP 999
>UNIPROTKB|F1P1F3 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF06839
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0016605 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 OMA:KPRKCSL EMBL:AADN02023704 IPI:IPI00571604
Ensembl:ENSGALT00000008050 Uniprot:F1P1F3
Length = 1020
Score = 1733 (615.1 bits), Expect = 1.7e-178, P = 1.7e-178
Identities = 354/799 (44%), Positives = 504/799 (63%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK A+ +A +LS N +R REG S++NKIYE++Y + GQ M+MTSV+GHL+
Sbjct: 38 VLCVAEKNDAARGIADLLS-NSRMRRREGFSKFNKIYEYDYQMFGQNVTMVMTSVSGHLL 96
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF +RKWHSC+P L+ A + K+ PE+ DIK+TLE E ++CQ LV+W DCDREGE
Sbjct: 97 AHDFKLPFRKWHSCNPLALFDAEIEKYCPENYVDIKRTLEREVQQCQALVIWTDCDREGE 156
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + +A +NL P+Q +DAV+ RQE+DLRI
Sbjct: 157 NIGFEIIHVCKAVKPNLQVFRARFSEITLHAVRRACENLTQPDQKTSDAVEVRQELDLRI 216
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ D + D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 217 GAAFTRFQTLRLQKIFPDILADQ---LISYGSCQFPTLGFVVERFKAIQAFVPEAFYKIK 273
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H E+G F+W R LF++T+ +++Y MC+++P ATV +V + K K+ P PL T+E
Sbjct: 274 VTHDHEDGNVVFNWKRNRLFNHTACLVLYHMCMEDPVATVVEVGSKPKSKWRPLPLDTVE 333
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR +++++ TM++AE LY GFISYPRTET+ F NL +VQ Q P+WG
Sbjct: 334 LEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQHQTQDPNWGA 393
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+AQR+LD RN G D+AHPPIHPTK+++ Q +LYE +VRHFLAC
Sbjct: 394 FAQRILDQGGPTPRN---GTKSDQAHPPIHPTKYTANLQGNEQ---RLYEFIVRHFLACC 447
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYL+VY +E W VIP Y G +F PTT+
Sbjct: 448 SQDAKGQETTVEIDIANERFVAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSRFQPTTV 507
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y A+ RF P ++G
Sbjct: 508 EMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLG 567
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KP+LR+ +E+D+K + G K K+ VL +Q+ K F++A +
Sbjct: 568 MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSIVLHQQVQKYKQVFIEAVARAN 627
Query: 610 KLLEAMGIFFERWSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL +A+ +F + +Q+ A +R+C C ++MVLK ++G + C +P
Sbjct: 628 KLDQALAQYFGEATEIVEQEEVYPAMPVSIRKCPQCN-NDMVLKTKKNGGFYLSCTGYPA 686
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
C+ AVW P V + A + C C P PV+ ++FKF++ +PP + +GCIGGCD+ L
Sbjct: 687 CKTAVWFPDFVLDVAKDESICAVCKPHPVHRLKFKFKRGSVPPTMPLEFVGCIGGCDQML 746
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCPSQF---SGS 782
++L+++ +R G+ + +N Q +N R +++G +++ S +
Sbjct: 747 KELLDL-RYSNRSSQSGQSASQQANQLQVNNSFNRGNSENRRVGGTTNMATGHLLYLSST 805
Query: 783 RNAR-ANGMNPQSGMTAEV 800
R R A P G A V
Sbjct: 806 RAPRPAPSAAPDDGNNAVV 824
>ZFIN|ZDB-GENE-071212-2 [details] [associations]
symbol:top3a "topoisomerase (DNA) III alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-071212-2 GO:GO:0005694 GO:GO:0008270 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
Gene3D:1.10.290.10 EMBL:BX649547 EMBL:BX649440 IPI:IPI00489703
ProteinModelPortal:F1R242 Ensembl:ENSDART00000102492 Bgee:F1R242
Uniprot:F1R242
Length = 1009
Score = 1677 (595.4 bits), Expect = 2.8e-176, Sum P(2) = 2.8e-176
Identities = 347/755 (45%), Positives = 488/755 (64%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A I+S + R REG S YNKIYE+ Y++ GQ + MTSV+GHL+
Sbjct: 36 VLCVAEKNDAAKGIAEIMSNGRSRR-REGCSVYNKIYEYEYNLFGQNVTVNMTSVSGHLL 94
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
L+F + +R HSC P L+ A V K+ PE+ IK+TLE E R+CQ L++W DCDREGE
Sbjct: 95 ALEF-KVHR--HSCSPVLLFDAEVEKYCPENFIPIKRTLEREVRQCQALIVWTDCDREGE 151
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I+VC+AV ++ + RARFS + I +A + L +P+ +DAVD RQE+DLRI
Sbjct: 152 NIGFEIIDVCKAVKPNIQVFRARFSEITPNSIRRACETLTEPDINVSDAVDVRQELDLRI 211
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GASFTRFQT+ L+ +S++D ++SYG CQFPTLGFVVER+ IQA E F+ I
Sbjct: 212 GASFTRFQTLRLQKIFPESLSDQ---LISYGSCQFPTLGFVVERFKAIQAFIPETFFKIK 268
Query: 250 CSHK-SEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTI 308
H+ +EE + F+W R LF++T+ +++Y+MC++EP A V V + K K+ P PL T+
Sbjct: 269 VVHEPNEEESVEFNWKRHRLFNHTACLVLYQMCMEEPMAKVISVTSKPKSKWRPLPLDTV 328
Query: 309 ELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWG 368
ELEK ASR R+S++ TMK+AE LY GFISYPRTET+ F NL +V++Q +WG
Sbjct: 329 ELEKLASRKLRISAKETMKIAEKLYTQGFISYPRTETNMFPQNLNLTRLVEQQTQDQEWG 388
Query: 369 PYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLAC 428
+AQR+L+ + G P +G D+AHPPIHPTK+++G + +LYE +VRHFLAC
Sbjct: 389 NFAQRILE-SGG--PTPRNGNKSDQAHPPIHPTKYTNG---LQGNEKRLYEFIVRHFLAC 442
Query: 429 VSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTT 488
S+ A G E VEI+IA E FS SG I+A+NYL+VY ++ W VIP+Y F PT
Sbjct: 443 CSKDAQGQEVTVEIDIAEERFSASGLTIIARNYLEVYPYDKWYNKVIPSYSPNTTFQPTA 502
Query: 489 LTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNI 548
+ + G T PP LL+EADL+S M+K GIGTDAT +HI+ + R Y A+ RF P +
Sbjct: 503 IEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGEL 562
Query: 549 GEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKK 608
G LV GY+ MGYE+ KP+LR+ +E+D+K VS G K+KA VL+ + + KA F+++ K
Sbjct: 563 GMGLVEGYNSMGYEMSKPDLRAELEADLKLVSEGRKNKASVLSYHVAKYKAVFIESVRKA 622
Query: 609 VKLLEAMGIFF-ERWSGGEDQQAAGEV---VRQCGICQESNMVLKKSRDGN-LMVGCLAF 663
KL EA+ + E +Q E+ VR+C C +MVLKK +D +++ CL +
Sbjct: 623 KKLDEALSNYLGPAQEIAEQEQVELEIPLPVRKCPQCNR-DMVLKKKKDSTGMLLSCLGY 681
Query: 664 PQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDE 723
P C+ AVW P +V E + + C +C P PV++++FKF++ +PP + +GCIGGCD+
Sbjct: 682 PACKAAVWFPDTVLEVSRDESICPTCRPHPVHMLKFKFKRGSLPPMMPLEFVGCIGGCDD 741
Query: 724 TLRQLIEICGTGSRIPARGRGPTASSNNGQQSNHR 758
TLR+++ + R SS + Q HR
Sbjct: 742 TLREVLNLKYLRGRDAESAPQANNSSRSSQHHIHR 776
Score = 57 (25.1 bits), Expect = 2.8e-176, Sum P(2) = 2.8e-176
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 733 GTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
G G + P+ G ++++ + RQR C C + GH+ CP
Sbjct: 965 GNGGK-PS-GNKKASTTSVKPPTAKRQRTCGICHEPGHTRVTCP 1006
>RGD|1309320 [details] [associations]
symbol:Top3a "topoisomerase (DNA) III alpha" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016605 "PML body"
evidence=ISO] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417 SMART:SM00436
SMART:SM00437 Pfam:PF01751 RGD:1309320 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 IPI:IPI00951502
Ensembl:ENSRNOT00000068351 UCSC:RGD:1309320 ArrayExpress:D4A6J4
Uniprot:D4A6J4
Length = 949
Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
Identities = 333/751 (44%), Positives = 471/751 (62%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS N +R +EG S++NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 36 VLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 94
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E + CQ LV+W DCDREGE
Sbjct: 95 AHDFQMQFRKWSSCNPLVLFEAEIEKYCPENFIDIKKTLERETQHCQALVIWTDCDREGE 154
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + A ++L +P+Q +DAVD RQE+DLRI
Sbjct: 155 NIGFEIIHVCKAVKPNLQVLRARFSEITHHAVRAACEHLTEPDQRVSDAVDVRQELDLRI 214
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 215 GAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEVFHRIK 271
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H ++GT F+W R LF++T+ +++Y++C+++P ATV +VR + K K+ P L T+E
Sbjct: 272 VTHDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVE 331
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TM++AE LY G S P S L + Q
Sbjct: 332 LEKLASRKLRINAKETMRIAEKLYTQGG-SLP--SLTSIPGDPMLTS--ERQTDGTQMYI 386
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+ +++ + + R P D+AHPPIHPTK++S D +LYE +VRHFLAC
Sbjct: 387 FTKQIANESE---RPPPKWDKSDQAHPPIHPTKYTSS---LQGDDRRLYEFIVRHFLACC 440
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET VEI+IA E F G +ILA+NYLDVY ++ W ++P Y G +F P+T+
Sbjct: 441 SQDAQGQETTVEIDIAQERFVAHGLIILARNYLDVYPYDHWSDKLLPVYEQGFRFQPSTV 500
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T PP LL+EADL++ M+K GIGTDAT +HI+ + R Y ++ RF P ++G
Sbjct: 501 EMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLG 560
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
LV GYD MGYE+ KPNLR+ +E+D+K + G K K VL +Q+ K F++A K
Sbjct: 561 MGLVEGYDSMGYEMSKPNLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAKAK 620
Query: 610 KLLEAMGIFF-ERWSGGEDQQ---AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
KL EA+ + ER + ++ A E VR+C C + +MVLK + G + C FP+
Sbjct: 621 KLDEALSQYLGERTEVAQQEEIYPAMPEPVRKCPQCNK-DMVLKTKKSGGFYLSCTGFPE 679
Query: 666 CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETL 725
CR+AVW P SV EA+ ++ C+ C P PVY ++ KF++ +PP + +GCIGGCDETL
Sbjct: 680 CRSAVWFPDSVLEASRDSSVCSVCQPAPVYRLKLKFKRGSLPPSMPLEFVGCIGGCDETL 739
Query: 726 RQLIEICGTGSRIPARGRGPTASSNNGQQSN 756
+++ + SR P R P+ Q N
Sbjct: 740 KEIFGL--RFSRAPPRASQPSGHLQASQALN 768
>UNIPROTKB|B4DK80 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR000380 InterPro:IPR001878
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00343
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005694 GO:GO:0008270 GO:GO:0006265 EMBL:AC127537
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
UniGene:Hs.592115 HGNC:HGNC:11992 HOVERGEN:HBG056668 EMBL:AK296437
IPI:IPI01011812 SMR:B4DK80 STRING:B4DK80 Ensembl:ENST00000542570
UCSC:uc010vxs.1 Uniprot:B4DK80
Length = 906
Score = 1553 (551.7 bits), Expect = 1.2e-164, Sum P(2) = 1.2e-164
Identities = 308/679 (45%), Positives = 436/679 (64%)
Query: 82 SCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA 141
SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGENI FE+I VC+A
Sbjct: 12 SCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCKA 71
Query: 142 VNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLL 201
V +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRIGA+FTRFQT+ L
Sbjct: 72 VKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRL 131
Query: 202 KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATF 261
+ + + + ++SYG CQFPTLGFVVER+ IQA E F I +H ++G F
Sbjct: 132 QRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEF 188
Query: 262 SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+ELEK ASR R++
Sbjct: 189 NWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRIN 248
Query: 322 SEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGL 381
++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG +AQ +L+
Sbjct: 249 AKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPT 308
Query: 382 WRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVE 441
RN G D+AHPPIHPTK+++ D +LYE +VRHFLAC SQ A G ET VE
Sbjct: 309 PRN---GNKSDQAHPPIHPTKYTNN---LQGDEQRLYEFIVRHFLACCSQDAQGQETTVE 362
Query: 442 INIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPL 501
I+IA E F G +ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP L
Sbjct: 363 IDIAQERFVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKL 422
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
L+EADL++ M+K GIGTDAT +HI+ + R Y + RF P ++G LV GYD MGY
Sbjct: 423 LTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGY 482
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFER 621
E+ KP+LR+ +E+D+K + G K K VL +Q+ K F++A K KL EA+ +F
Sbjct: 483 EMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGN 542
Query: 622 WSGGEDQQ----AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVS 677
+ Q+ A E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV
Sbjct: 543 GTELAQQEDIYPAMPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVL 601
Query: 678 EAAVTTNTCNSCTPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR 737
EA+ ++ C C P PVY ++ KF++ +PP + + CIGGCD+TLR+++++ +G
Sbjct: 602 EASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGG- 660
Query: 738 IPARGRGPTASSNNGQQSN 756
P R P+ Q N
Sbjct: 661 -PPRASQPSGRLQANQSLN 678
Score = 71 (30.1 bits), Expect = 1.2e-164, Sum P(2) = 1.2e-164
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 740 ARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
AR + P ASS++ + + R C C Q GH+ CP
Sbjct: 867 ARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCP 903
>DICTYBASE|DDB_G0275257 [details] [associations]
symbol:top3 "DNA topoisomerase III" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 dictyBase:DDB_G0275257
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 Gene3D:1.10.290.10 RefSeq:XP_643754.2 HSSP:O29238
ProteinModelPortal:Q8T2T7 STRING:Q8T2T7 EnsemblProtists:DDB0234226
GeneID:8619798 KEGG:ddi:DDB_G0275257 OMA:IKRLWIN Uniprot:Q8T2T7
Length = 828
Score = 943 (337.0 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 199/485 (41%), Positives = 295/485 (60%)
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTA------TFSWMRGHLF 269
++SYGPCQFPTLGFVVERY+ I + E+FW ++ H+ + ++ TFSW R LF
Sbjct: 232 IISYGPCQFPTLGFVVERYFRIVNFKPEDFWHLSVVHEKMDTSSGKMIPVTFSWCRNRLF 291
Query: 270 DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVA 329
DYT+A I+YE C+ ATV V +E +Y P PL+TIEL+K AS+ R+SS TM+ A
Sbjct: 292 DYTAAFILYEKCLDNTEATVVDVTSKES-RYRPVPLTTIELQKAASKKLRISSVQTMQYA 350
Query: 330 EDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGG 389
E+LY G ISYPRTETDSF +GT+L G++ Q +P+WG YA RL+++ ++ P SG
Sbjct: 351 EELYTKGLISYPRTETDSFQAGTDLKGLIGNQASNPEWGAYASRLINNNQFVY--PKSGK 408
Query: 390 HDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVF 449
++D +HPPIHPT ++G S + K+Y+ + R FLAC S+ +V A T V I+I GE F
Sbjct: 409 NNDNSHPPIHPTSSATG---LSGNLKKIYDFITRRFLACCSEESVFANTTVTIDIQGERF 465
Query: 450 STSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
S +G ++L YL+VY F+ +IPTY G++F P + L G T P ++EA+LL+
Sbjct: 466 SETGTMVLKLGYLEVYPFDKRNDKLIPTYQKGERFTPKRIDLTKGTTVAPHYITEAELLT 525
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
MD IGTDATM HI+ + DRFY K+ + +F P+N+G +LV Y+ MG+E KPNLR
Sbjct: 526 AMDNNKIGTDATMATHIQTIQDRFYVKKNESNQFVPSNLGVSLVASYELMGFEFSKPNLR 585
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE-AMGIFFERWS--GGE 626
+ +E+D+ ++S G K+K +VL + +++ K + A + + + + ++E GGE
Sbjct: 586 AAIEADVDKISRGQKTKQEVLLSTIEKYKQLYQLAN-QNINCFDRSFREYYEPADPKGGE 644
Query: 627 DQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP--GSVSEAAVTTN 684
+ + R CG C M K ++ L PQC + LP G +S+ +
Sbjct: 645 FRVLVSQFSR-CGKCN-GKMQYKSDQNPEAPKRILFCPQCIDTFDLPKNGDISQLVTSMG 702
Query: 685 TCNSC 689
+C
Sbjct: 703 VPQNC 707
Score = 591 (213.1 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 116/205 (56%), Positives = 148/205 (72%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRG-QPCHMLMTSVTGHL 68
+LNVAEKPS AK +A ILS N+ +REG S+YNK+++F Y+I C M TSVTGHL
Sbjct: 5 ILNVAEKPSAAKEIAAILS-NKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 63
Query: 69 MELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
ME+D E+++ W SCDP L+ AP+RK VP DK+ +KKTLE E ++ L+LWLDCDREG
Sbjct: 64 MEIDVVEQFKPWASCDPIQLFDAPIRKTVPSDKEPLKKTLEREIKKADILILWLDCDREG 123
Query: 129 ENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLR 188
ENIAFEV+EVC+ RA FSA+I REI +A +NL PN+ + AVD R EIDLR
Sbjct: 124 ENIAFEVLEVCKNAKKKFEFYRAHFSAIIPREIDRACKNLAKPNEKDSIAVDTRMEIDLR 183
Query: 189 IGASFTRFQTMLLKNFHIDSVTDDR 213
IGA+FTRFQT+ LK F I S +D++
Sbjct: 184 IGAAFTRFQTLYLKKFKIISNSDNQ 208
>FB|FBgn0040268 [details] [associations]
symbol:Top3alpha "Topoisomerase 3alpha" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042246 "tissue regeneration" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] InterPro:IPR000380
InterPro:IPR001878 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR010666 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00343 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 EMBL:AE014134 GO:GO:0008270
GO:GO:0000002 GO:GO:0042246 GO:GO:0000724 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:AF255733 EMBL:BT015282 RefSeq:NP_523602.2
UniGene:Dm.2659 ProteinModelPortal:Q9NG98 SMR:Q9NG98 STRING:Q9NG98
PaxDb:Q9NG98 PRIDE:Q9NG98 EnsemblMetazoa:FBtr0081246 GeneID:35236
KEGG:dme:Dmel_CG10123 CTD:35236 FlyBase:FBgn0040268 eggNOG:COG0550
GeneTree:ENSGT00530000063430 InParanoid:Q9NG98 KO:K03165
OMA:LVIHERN OrthoDB:EOG43TX9H PhylomeDB:Q9NG98 GenomeRNAi:35236
NextBio:792526 Bgee:Q9NG98 GermOnline:CG10123 Gene3D:1.10.290.10
Uniprot:Q9NG98
Length = 1250
Score = 1442 (512.7 bits), Expect = 2.8e-152, Sum P(2) = 2.8e-152
Identities = 312/718 (43%), Positives = 425/718 (59%)
Query: 2 AGGGRPINVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLM 61
A G+ + LNVAEK AK++AG+LS R REG S YNK+++F +RGQ M+M
Sbjct: 20 ANPGQAMKYLNVAEKNDAAKTIAGLLSNGAAQR-REGYSVYNKVFDFEAPVRGQNAKMVM 78
Query: 62 TSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLW 121
TSV+GH+M+L F Y+ W + DP L+ APV+K V D + IK+TLE E R CQ L++W
Sbjct: 79 TSVSGHMMQLAFQVSYKNWRTVDPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIW 138
Query: 122 LDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DCDREGENI +E+I+VCRA+ ++ + RA FS + + +A+Q L P++ +DAVD
Sbjct: 139 TDCDREGENIGYEIIDVCRAIKPNISVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDV 198
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R E+DLR GA+ TRFQTM L+ + + D ++SYG CQ PTLGFV ERY EI+A
Sbjct: 199 RTELDLRTGAAITRFQTMRLQRLFPEKIADK---LISYGSCQIPTLGFVAERYKEIEAFV 255
Query: 242 SEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT--ATVTKVRQQEKLK 299
SE FW I H ++ T F+W R LFD + +C+ EP A V V + K K
Sbjct: 256 SEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPDPRALVESVTVKPKHK 315
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQ 359
+ P PL T+E+EK SR ++S++ TM +AE LY GFISYPRTET+ FS L +V+
Sbjct: 316 WRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYTKGFISYPRTETNQFSKEFALAPLVE 375
Query: 360 EQIGHPDWGPYAQRLLDHAAGLWR-NPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
Q GH DWG +AQR+++ W NP +G D+AHPPIHPTK + + ++Y
Sbjct: 376 MQTGHRDWGAFAQRVIE-----WGPNPRNGNKSDQAHPPIHPTKLAEN---LQGNEARVY 427
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTY 478
ELVVRHFLACVS+ AVG+ET+V I+IAGE F+ +G VI +NYLDVY ++ W I Y
Sbjct: 428 ELVVRHFLACVSKDAVGSETLVHIDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHY 487
Query: 479 VHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY-AIK 537
+GQ+F PT ++L G T PPLL+EADL++ M+K GIGTDAT +HI + +R Y +
Sbjct: 488 ENGQRFEPTEVSLHEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVL 547
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
D P IG L GYD M L KP LR+ E D+K + G K VL + +
Sbjct: 548 DKGF-LVPGVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLTEQIAKY 606
Query: 598 KACF---------LDARLKKVKLLE---AMGIFFERWSGGEDQQAAGEVVRQCGICQESN 645
K + +DA++ ++ E A E G + + QC C E+
Sbjct: 607 KQAYQQITDKITAMDAKIS-ARINETPAANSAVQEGADGSAPSHGIIQSIFQCPKCNEAP 665
Query: 646 MVLK-KSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFR 702
+ LK K +GC FP C+NAVWLP +A+V C +C G Y + KFR
Sbjct: 666 LALKPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDG--YRM-LKFR 720
Score = 65 (27.9 bits), Expect = 2.8e-152, Sum P(2) = 2.8e-152
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 733 GTGSRIPARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
G+ +R P PTA +++G ++ R C C++ GH+ + CP
Sbjct: 1204 GSANRNPPGRSQPTAITSDGPKT----RRCGLCRKEGHTRNKCP 1243
>GENEDB_PFALCIPARUM|PF13_0251 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III,
putative" species:5833 "Plasmodium falciparum" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 743 (266.6 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 148/356 (41%), Positives = 217/356 (60%)
Query: 248 INCSHKSEE--GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
IN ++K + F+W R LFD+ + ++IYE ++ P +T V + E KY PYPL
Sbjct: 327 INNNNKKNKHNNVVDFTWSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPL 386
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+++ K S YF++SS+ M +AE LY G+ISYPRTET+ F NLH I+ E +
Sbjct: 387 NTLQMTKLVSIYFKISSKECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKND 446
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++G YA +L + ++ P G +DKAHPPIHP K + + + +KLYE + +HF
Sbjct: 447 NFGWYANKLCEEHK--YQKPRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHF 504
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA S A+G T V I E F G I KNYL++Y +E W +IP++ +F
Sbjct: 505 LAVCSNDAIGYNTKVTAKIQEEQFFCKGLKIKEKNYLEIYTYEKWNDKIIPSFQVDDEFY 564
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT+L ++ G+T+PP LSE++LL+ MDK IGTDATMH+HI+ + R Y IK++ + F P
Sbjct: 565 PTSLLIEEGITQPPKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRNYVIKNSKSLFIP 624
Query: 546 TNIGEALVMGYD---DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
TN+G ALV Y D+G +L P+LR+ ME DM V+ G K K +++ N + MK
Sbjct: 625 TNLGIALVQSYKKFKDIGIDLTDPSLRAKMEKDMSLVASGVKQKNEIIRNYIDIMK 680
Score = 621 (223.7 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 117/245 (47%), Positives = 174/245 (71%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEKPSVA S+A ILSK + +I+ S+YN ++ F+Y I+ +M +TSVTGH
Sbjct: 4 LKVLNVAEKPSVASSIAEILSKGRPNKIKSC-SKYNPVFTFDYKIKNDIWYMYVTSVTGH 62
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L + FD+RY+ WH+ DP +L+ A + +V +DKK+I+ L++ ++ C L+LWLDCDRE
Sbjct: 63 LTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKECNMLILWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I FEVI CR N L++ RA+FSA+ +++I A+ NL +PN+ A +VD R+EIDL
Sbjct: 123 GEHICFEVINACRITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRREIDL 182
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+G+ FTRF T+ +I+ V + +++ SYGPCQFPTLGFVV RY +I+ ++E +W+
Sbjct: 183 RMGSIFTRFMTIR----YIELVKHETSII-SYGPCQFPTLGFVVNRYLDIKNFKNEYYWS 237
Query: 248 INCSH 252
I +
Sbjct: 238 IKMKY 242
>UNIPROTKB|Q8IDM7 [details] [associations]
symbol:PF13_0251 "DNA topoisomerase III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 EMBL:AL844509
GO:GO:0006265 GO:GO:0003918 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 KO:K03165 Gene3D:1.10.290.10 HOGENOM:HOG000184377
OMA:IGLMDAN RefSeq:XP_001350185.1 ProteinModelPortal:Q8IDM7
EnsemblProtists:PF13_0251:mRNA GeneID:814216 KEGG:pfa:PF13_0251
EuPathDB:PlasmoDB:PF3D7_1347100 ProtClustDB:CLSZ2514997
Uniprot:Q8IDM7
Length = 710
Score = 743 (266.6 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 148/356 (41%), Positives = 217/356 (60%)
Query: 248 INCSHKSEE--GTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
IN ++K + F+W R LFD+ + ++IYE ++ P +T V + E KY PYPL
Sbjct: 327 INNNNKKNKHNNVVDFTWSRIRLFDHLAVILIYEELLKNPLCKITNVYESETRKYKPYPL 386
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+++ K S YF++SS+ M +AE LY G+ISYPRTET+ F NLH I+ E +
Sbjct: 387 NTLQMTKLVSIYFKISSKECMMLAEKLYNKGYISYPRTETNYFPDSMNLHKIINELRKND 446
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
++G YA +L + ++ P G +DKAHPPIHP K + + + +KLYE + +HF
Sbjct: 447 NFGWYANKLCEEHK--YQKPRKGKMNDKAHPPIHPVKNMNKSLKVEEKEWKLYEFICKHF 504
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
LA S A+G T V I E F G I KNYL++Y +E W +IP++ +F
Sbjct: 505 LAVCSNDAIGYNTKVTAKIQEEQFFCKGLKIKEKNYLEIYTYEKWNDKIIPSFQVDDEFY 564
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
PT+L ++ G+T+PP LSE++LL+ MDK IGTDATMH+HI+ + R Y IK++ + F P
Sbjct: 565 PTSLLIEEGITQPPKYLSESNLLTLMDKFSIGTDATMHEHIENIQKRNYVIKNSKSLFIP 624
Query: 546 TNIGEALVMGYD---DMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
TN+G ALV Y D+G +L P+LR+ ME DM V+ G K K +++ N + MK
Sbjct: 625 TNLGIALVQSYKKFKDIGIDLTDPSLRAKMEKDMSLVASGVKQKNEIIRNYIDIMK 680
Score = 621 (223.7 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 117/245 (47%), Positives = 174/245 (71%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VLNVAEKPSVA S+A ILSK + +I+ S+YN ++ F+Y I+ +M +TSVTGH
Sbjct: 4 LKVLNVAEKPSVASSIAEILSKGRPNKIKSC-SKYNPVFTFDYKIKNDIWYMYVTSVTGH 62
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L + FD+RY+ WH+ DP +L+ A + +V +DKK+I+ L++ ++ C L+LWLDCDRE
Sbjct: 63 LTDQKFDDRYKNWHNTDPQELFDAEITVYVEKDKKNIENNLKKYSKECNMLILWLDCDRE 122
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I FEVI CR N L++ RA+FSA+ +++I A+ NL +PN+ A +VD R+EIDL
Sbjct: 123 GEHICFEVINACRITNRKLIIHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRREIDL 182
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
R+G+ FTRF T+ +I+ V + +++ SYGPCQFPTLGFVV RY +I+ ++E +W+
Sbjct: 183 RMGSIFTRFMTIR----YIELVKHETSII-SYGPCQFPTLGFVVNRYLDIKNFKNEYYWS 237
Query: 248 INCSH 252
I +
Sbjct: 238 IKMKY 242
>WB|WBGene00006596 [details] [associations]
symbol:top-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007126 "meiosis" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR010666 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 Pfam:PF06839 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007126 GO:GO:0005694 GO:GO:0008270
GO:GO:0007276 EMBL:AL132860 GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 EMBL:AF057032 PIR:T43031 RefSeq:NP_499558.1
UniGene:Cel.19512 ProteinModelPortal:O61660 SMR:O61660
STRING:O61660 PaxDb:O61660 EnsemblMetazoa:Y56A3A.27.1
EnsemblMetazoa:Y56A3A.27.2 GeneID:176631 KEGG:cel:CELE_Y56A3A.27
UCSC:Y56A3A.27.1 CTD:176631 WormBase:Y56A3A.27 InParanoid:O61660
OMA:IGLMDAN NextBio:893376 Uniprot:O61660
Length = 759
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 269/603 (44%), Positives = 370/603 (61%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L VAEK VAK VA ILS R REGRS++NKIY N + GQ + +TSV+GH+M
Sbjct: 5 LFVAEKNDVAKGVAAILSNGTANR-REGRSKFNKIYTLNTELFGQQTAISVTSVSGHMMN 63
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
F E W + +L+ APVR V + K I++TL E+A+R LV+W DCDREGE
Sbjct: 64 FQFHENMSNWQTASMVELFRAPVRHVVTPEMKLIEQTLREQAQRHDILVVWTDCDREGEA 123
Query: 131 IAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIG 190
I E+++VCR N L + RARFS + I +A +NL+ ++ AVD R E+DLRIG
Sbjct: 124 IGAEIVKVCRDSNRRLDIFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELDLRIG 183
Query: 191 ASFTRFQTMLLKNFHIDSV-TDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
++FTR QT+ L+N D + +D + V+SYG CQFPTLGFV +RY I+ SE FW +
Sbjct: 184 SAFTRLQTLHLRNRFRDLLGQNDTSQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKLI 243
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
H E F W R LFD + I+++ C + A V KV ++ K K+ P L T+E
Sbjct: 244 VEHTRESHKVEFLWDRNRLFDRDTVDILHDECKETKEAHVEKVAKKPKSKWRPQALDTVE 303
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK RMS++ TM+VAE LY GFISYPRTET+ F +G NL +VQ+Q WG
Sbjct: 304 LEKLGISKLRMSAKQTMQVAEKLYSKGFISYPRTETNKFPAGLNLTPLVQQQTQSNIWGD 363
Query: 370 YAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACV 429
+A +L + NP +G D+AHPPIHP KF+ + + D +K+YELVVRHFLACV
Sbjct: 364 FANEVLQNGV----NPRNGRKSDEAHPPIHPLKFTE-KHQLQGDDWKVYELVVRHFLACV 418
Query: 430 SQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTL 489
SQ A G ET+V + + E F SG I YL VY +E WG ++PTY G++F L
Sbjct: 419 SQDAQGEETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKWGNRLLPTYTEGERFTDFEL 478
Query: 490 TLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIG 549
+ G T+ P L+EADL+S MDK GIGTDAT +HI+K+ R Y + + P+ +G
Sbjct: 479 KIGDGKTQAPDFLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLG 538
Query: 550 EALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKV 609
ALV GYDDMG+ + KP+LR+ +E +KE+ G + K +VL + + +A F+++ +K+
Sbjct: 539 LALVDGYDDMGFAMSKPDLRANLEIGLKEICDGRRQKQEVLDEQIGKYRAIFVESE-RKI 597
Query: 610 KLL 612
+L
Sbjct: 598 GVL 600
>POMBASE|SPBC16G5.12c [details] [associations]
symbol:top3 "DNA topoisomerase III" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000280 "nuclear division"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=TAS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006259
"DNA metabolic process" evidence=IGI] [GO:0006261 "DNA-dependent
DNA replication" evidence=IMP] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0031297 "replication fork processing" evidence=NAS] [GO:0031422
"RecQ helicase-Topo III complex" evidence=TAS] [GO:0043007
"maintenance of rDNA" evidence=IMP] [GO:0045910 "negative
regulation of DNA recombination" evidence=TAS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 PomBase:SPBC16G5.12c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0000070 GO:GO:0045910 GO:GO:0031297
GO:GO:0000712 GO:GO:0007000 GO:GO:0043007 GO:GO:0006265
PROSITE:PS50880 GO:GO:0031422 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OMA:IGLMDAN EMBL:AF126287 PIR:T39604
RefSeq:NP_596761.1 ProteinModelPortal:O60126 STRING:O60126
EnsemblFungi:SPBC16G5.12c.1 GeneID:2539881 KEGG:spo:SPBC16G5.12c
OrthoDB:EOG4KWP2D NextBio:20801026 Uniprot:O60126
Length = 622
Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
Identities = 256/606 (42%), Positives = 365/606 (60%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ VL VAEK S+AKSVA IL +R R+ RS+Y K Y+F+++ G + MTSV+
Sbjct: 1 MRVLCVAEKNSIAKSVASILGGGH-VRRRDTRSKYVKNYDFSFNFGGNVGSSDVTMTSVS 59
Query: 66 GHLMELDFDERYRKWHSCDPAD-LYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GHL E F Y W S P D L+ A + V ++ + + +++EAR Q+L +W DC
Sbjct: 60 GHLTEASFPSEYSSWSSV-PQDVLFDAQIITSVSKNAEVLADNIKKEARNAQYLYIWTDC 118
Query: 125 DREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQE 184
DREGE+I E+ V RA N + + RA F+ L I A + D ++ ADAVDAR E
Sbjct: 119 DREGEHIGVEISNVARASNPSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARIE 178
Query: 185 IDLRIGASFTRFQTMLL-KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
+D R+GA FTR QT+ L K+F I +N ++SYGPCQFPTLGFVV+R+ ++ E
Sbjct: 179 LDFRLGAIFTRLQTIQLQKSFDIL-----QNKIISYGPCQFPTLGFVVDRWQRVEDFVPE 233
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
+W + K + T F+W R +FD + +II E C++ TA V + Q+ K KY P
Sbjct: 234 TYWHLRFVDKRQGKTIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYKPL 293
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
PLST+EL K ++ R+S++ T+++AE+LY GF+SYPRTETD F S NLH I+Q+ G
Sbjct: 294 PLSTVELTKLGPKHLRISAKKTLELAENLYTNGFVSYPRTETDQFDSSMNLHAIIQKLTG 353
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
+W YA+ LL AG +R P G H+D+AHPPIHP + + SQDH+K+YEL+ R
Sbjct: 354 AQEWDSYAEGLL---AGDYRPPRKGKHNDRAHPPIHPVQMVHRSALPSQDHWKVYELITR 410
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGL-VIPTYVHGQ 482
FLAC S A GAET+V++ + E+FS G ++ KNYL+VY +E W +P Y +
Sbjct: 411 RFLACCSDNAKGAETLVQVKMEEELFSKKGLLVTEKNYLEVYPYEKWESSDQLPEYRLHE 470
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDAN-- 540
+F P L + T P ++E +L++ MD GIGTDATM +HI+K+ +R Y IK
Sbjct: 471 EFQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQEREYVIKRKKRG 530
Query: 541 ---TRFAPTNIGEALVMGYDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
T F P+++G AL GYD++G E L KP LR ME +K + G ++ ++ L
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTKPFLRKEMEVQLKNIENGQLNRNVLVHMILT 590
Query: 596 QMKACF 601
Q + F
Sbjct: 591 QFRDVF 596
>ASPGD|ASPL0000072189 [details] [associations]
symbol:AN4555 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:BN001303 EMBL:AACD01000078 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 HOGENOM:HOG000184377 OMA:IGLMDAN
OrthoDB:EOG4KWP2D RefSeq:XP_662159.1 ProteinModelPortal:Q5B4H5
STRING:Q5B4H5 EnsemblFungi:CADANIAT00005883 GeneID:2872352
KEGG:ani:AN4555.2 Uniprot:Q5B4H5
Length = 629
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 251/621 (40%), Positives = 371/621 (59%)
Query: 10 VLNVAEKPSVAKSVAGILS--KNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
VL VAEKP++AK+VA LS + + + R N +++FN+ + + MTSV GH
Sbjct: 6 VLCVAEKPAIAKAVAQHLSGGRMETKNVTGNRFVKNYVFDFNFGNQWGNSSVTMTSVLGH 65
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
L L+F+ +Y W SC PA L+ APV+ V +DKK I + ++A Q+LV+W DCDRE
Sbjct: 66 LTSLEFERQYSGWASCPPAALFEAPVKIAVDDDKKAIANNIMKQATHSQYLVIWTDCDRE 125
Query: 128 GENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDL 187
GE+I EV + +A N +V++RA+F+ + A ++L++ ++ A+AV AR E+DL
Sbjct: 126 GEHIGTEVRDQAKAGNGRIVVKRAKFNNTEKIHVLNAARSLIELDERQANAVAARIELDL 185
Query: 188 RIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWT 247
RIGA+FTR T+ L+N H ++T V+SYG CQFPTLGFVV+RY ++ + E FW
Sbjct: 186 RIGAAFTRLLTLQLQNLHA-TLTQK---VISYGSCQFPTLGFVVDRYLRVKRFKPETFWG 241
Query: 248 INCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLST 307
I H + +F W R HLFD + I+ E C+ A VTKV Q+ K+ P PL+T
Sbjct: 242 IKVMHTRDGIKVSFLWNRVHLFDRAAVTIMLERCLMATKAEVTKVNQKPTSKWRPLPLTT 301
Query: 308 IELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDW 367
++L+ ++Y RM S MK+AE+LY GFISYPRTETD F G +L ++++Q+ W
Sbjct: 302 VDLQMMGTKYLRMDSAKVMKIAENLYTKGFISYPRTETDQFDKGIDLKKLIEKQLPDERW 361
Query: 368 GPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLA 427
G YA+ LL G +R P +G H+D+AHPPIHP + + + ++D K+YE V R FLA
Sbjct: 362 GEYARCLL---GGNFRTPRAGRHNDQAHPPIHPVCWVN-PTTLTEDERKVYEFVTRRFLA 417
Query: 428 CVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIP 486
C S A G T VEI E+F G ++L +NYLDVY ++ W +P Y G+ F P
Sbjct: 418 CCSDDAKGQSTDVEIRYGDEMFHAHGLLVLERNYLDVYVYDKWESTQQLPNYQVGELFEP 477
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFY-------AIKDA 539
T + G T PP L+E +L+ MD GIGTDATM +HI+++ R Y + ++A
Sbjct: 478 TEANMFDGKTSPPNYLTEPELIGLMDANGIGTDATMAEHIERIKSREYIGEMTRGSGRNA 537
Query: 540 NTRFAPTNIGEALVMGYDDM--GY----ELWKPNLRSMMESDMKEVSVGNKSKADVLANC 593
PT +G AL++GY+D+ G L KP LR ME +M++V G + + V+
Sbjct: 538 VKLLIPTRLGIALILGYEDVFAGLADSPSLSKPFLRKQMELEMRDVCAGTRLRTHVVQQN 597
Query: 594 LQQMKACFLDARLKKVKLLEA 614
L + F+ + +++ +L+A
Sbjct: 598 LDMYRELFIHTQ-RRMNMLKA 617
>CGD|CAL0003329 [details] [associations]
symbol:orf19.5934 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0031422 "RecQ helicase-Topo III
complex" evidence=IEA] [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0043007 "maintenance of rDNA"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0007004 "telomere maintenance via telomerase" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
Pfam:PF01131 PRINTS:PR00417 SMART:SM00436 SMART:SM00437
CGD:CAL0003329 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
EMBL:AACQ01000003 EMBL:AACQ01000004 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03165
Gene3D:1.10.290.10 RefSeq:XP_722999.1 RefSeq:XP_723146.1
STRING:Q5ANG9 GeneID:3635251 GeneID:3635329 KEGG:cal:CaO19.13355
KEGG:cal:CaO19.5934 Uniprot:Q5ANG9
Length = 629
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 235/596 (39%), Positives = 349/596 (58%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ--PCHMLMTSVT 65
+ +L VAEKPS++K VA IL + ++R R ++ K Y+F ++ + PC + MTSV
Sbjct: 1 MRILCVAEKPSISKEVANILGGGRK-KVRNSREKFIKNYDFTFTFNSEDGPCQVTMTSVA 59
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ LDF + W +C P L+ A ++ + KK I + + EEAR L++W DCD
Sbjct: 60 GHITGLDFGSAF-SWGNCVPGRLFEADIKTIIT--KKSIYENIAEEARNADKLMIWTDCD 116
Query: 126 REGENIAFEVIEVCRAVNCHLVLR---RARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE I FE++ R N +L L RARFS L I +A +N V+ + AV R
Sbjct: 117 REGEYIGFEIMNAARKYNRNLGLNNIWRARFSHLERNHIIRAAKNPVNLDMSAVSAVSCR 176
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
EIDLR+G SFTR T L+ I ++N + SYG CQFPTLGFVV+RY +++
Sbjct: 177 MEIDLRVGTSFTRLLTDQLRQKGII----EKNELASYGTCQFPTLGFVVDRYKRVKSFTP 232
Query: 243 EEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPT-ATVTKVRQQEKLKYP 301
E FW I + E F+W+RGH FD V++Y+ C + T++K+ + K +
Sbjct: 233 EPFWYIEIETRKENKKTIFNWVRGHFFDKMYVVMLYDRCCKSGEFGTISKIESKRKPNFR 292
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P+PL+T+EL+K +R+F+MS++ + AE LY G++SYPRTETD F+ T+ +++
Sbjct: 293 PFPLTTVELQKDCARFFKMSAKTALAAAERLYNLGYLSYPRTETDRFAKETDFKSLLEVH 352
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
P WG Y +LL+ + P SG HDDKAHPPIHP K+ S ++ + D K+YE V
Sbjct: 353 KQDPRWGSYTTKLLNEG---FETPRSGSHDDKAHPPIHPIKYVSLDTLNTLDEKKVYEYV 409
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESW-GGLVIPTYVH 480
VR F+AC S+ AVG +T+V + E F+ SG ++ KNYL+VY ++ W +P +
Sbjct: 410 VRRFIACCSKDAVGTQTVVTLKWGDEFFTASGLMVHEKNYLEVYTYKKWESSKQLPKFTE 469
Query: 481 GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK--- 537
G+Q ++ L G T PP ++E +L++ MD GIGTDAT+ +HI K+ R Y K
Sbjct: 470 GEQVKLSSGILKDGKTSPPNHMTEPELIALMDANGIGTDATIAEHINKIETRHYINKLKK 529
Query: 538 DANTRFAPTNIGEALVMGYDDMGYE---LWKPNLRSMMESDMKEVSVGNKSKADVL 590
N PT +G L+ G + M +E L KP LR +E +++++ G++ K DVL
Sbjct: 530 GKNEYILPTPLGMGLIEGLEKMEFEDVSLSKPFLRKSLERSLEDIATGSRPKVDVL 585
>MGI|MGI:1333803 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 UniProt:Q9Z321 Pfam:PF01751 MGI:MGI:1333803
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 PROSITE:PS50880 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
HOGENOM:HOG000184378 HOVERGEN:HBG059857 OMA:GNKERDE
OrthoDB:EOG4ZPDTK EMBL:AB013603 EMBL:BC031723 IPI:IPI00131337
RefSeq:NP_035754.1 UniGene:Mm.326089 ProteinModelPortal:Q9Z321
SMR:Q9Z321 STRING:Q9Z321 PhosphoSite:Q9Z321 PaxDb:Q9Z321
PRIDE:Q9Z321 Ensembl:ENSMUST00000023465 Ensembl:ENSMUST00000119787
GeneID:21976 KEGG:mmu:21976 InParanoid:Q9Z321 ChiTaRS:TOP3B
NextBio:301682 Bgee:Q9Z321 CleanEx:MM_TOP3B Genevestigator:Q9Z321
GermOnline:ENSMUSG00000022779
Length = 862
Score = 1003 (358.1 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 237/640 (37%), Positives = 351/640 (54%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAV--NCH---LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V N H + RARFS++ D +I A+ L +P+ A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNNAHNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + H +E + W R +FD+ A + M E A V ++EK K P
Sbjct: 239 TYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLEKEAWVEATSRKEKAKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGSLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP W ++LL A G+ R P G HD HPPI P K S+ E+ D ++LYE +
Sbjct: 359 NHPYWADSVKQLL--AEGINR-PRKG-HDAGDHPPITPMK-SATEAELGGDAWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS ++ + I E F+ G+ +++ + ++ ++S +PT G
Sbjct: 414 RHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQKG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 474 DTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K F
Sbjct: 534 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVLGHTLDIFKRKF 593
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ E M + F + A G+ + +CG C
Sbjct: 594 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
Score = 107 (42.7 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 32/125 (25%), Positives = 48/125 (38%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C C + V+ +TCN+C
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNT---CNVVAHCFENAHRVRVSADTCNTCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H GCI CD ++L+E+ S P GP G+
Sbjct: 778 -LLDVDFNKAKSPLPGNETQHTGCIF-CDPVFQELVELKHAASCHPMHRGGPGRRQGRGR 835
Query: 754 QSNHR 758
R
Sbjct: 836 GRGRR 840
>RGD|1309468 [details] [associations]
symbol:Top3b "topoisomerase (DNA) III beta" species:10116
"Rattus norvegicus" [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA;ISO]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 RGD:1309468
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 EMBL:CH473999
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940
OrthoDB:EOG4ZPDTK OMA:QMFLNIT IPI:IPI00370440 RefSeq:NP_001099331.1
UniGene:Rn.23773 Ensembl:ENSRNOT00000002524 GeneID:287930
KEGG:rno:287930 NextBio:627240 Uniprot:D4A9Z2
Length = 862
Score = 1002 (357.8 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 238/640 (37%), Positives = 350/640 (54%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + +G + ++++ + GQP H MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAV--NCH---LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V N H + RARFS++ D +I A+ L +P+ A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVLNNAHNGEKTVFRARFSSITDTDICNAMTRLTEPDHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + H +E + W R +FD A + M E A V ++EK K P
Sbjct: 239 TYWVLQAKVHTDKEESLLLDWDRVRVFDREIAQMFLNMTKLEKEAWVEATSKKEKAKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M+VAE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASSALGMGPQHAMQVAERLYTQGYISYPRTETTHYPENFDLKGSLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP W ++LL A G+ R P G HD HPPI P K S+ E+ D ++LYE +
Sbjct: 359 NHPYWADSVKQLL--AEGINR-PRKG-HDAGDHPPITPMK-SATEAELGGDAWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS ++ + I E F+ G+ +++ + ++ ++S +PT G
Sbjct: 414 RHFIATVSHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQKG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y +
Sbjct: 474 DTFTVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + ++ G + VL + L K F
Sbjct: 534 RLKPTNLGIVLVHGYHKIDAELVLPTIRSAVEKQLNLIAQGKANYHQVLGHTLDIFKRKF 593
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ E M + F + A G+ + +CG C
Sbjct: 594 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
Score = 108 (43.1 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 32/125 (25%), Positives = 48/125 (38%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C C + V+ +TCN+C
Sbjct: 723 IGQCVECENGVLVLDPTSGPKWKVACNT---CSVVAHCFDNAHRVRVSADTCNTCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H GCI CD ++L+E+ S P GP G+
Sbjct: 778 -LLDVDFNKAKSPLPGNETQHTGCIF-CDTVFQELVELKHAASCHPMHRGGPGRRQGRGR 835
Query: 754 QSNHR 758
R
Sbjct: 836 ARGRR 840
>TAIR|locus:2045517 [details] [associations]
symbol:AT2G32000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 EMBL:CP002685 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 KO:K03165
OMA:QMFLNIT IPI:IPI00534869 RefSeq:NP_180760.2 UniGene:At.38130
PRIDE:F4ISQ7 EnsemblPlants:AT2G32000.1 GeneID:817760
KEGG:ath:AT2G32000 Uniprot:F4ISQ7
Length = 865
Score = 1015 (362.4 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 235/637 (36%), Positives = 359/637 (56%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
+ VL VAEKPS+A S+A +LS Q + R G + +++EF+ RG H +TSV GH
Sbjct: 5 LRVLMVAEKPSIALSIASVLSHGQ-MSTRRGST---EVHEFDGMFRGFKAHYRVTSVIGH 60
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+ +DF E+Y+ W + DP DL+ AP+ K K I + L EAR C ++VLWLDCDRE
Sbjct: 61 VFSVDFPEKYQNWATIDPQDLFDAPIIKKESNPKAHICRHLSNEARGCSYMVLWLDCDRE 120
Query: 128 GENIAFEVIEVCR--AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEI 185
GENI FEVIE + + RARFS++ +++I +A+ NLV+PN+ A AVDARQEI
Sbjct: 121 GENICFEVIESTGFDMKDSKRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEI 180
Query: 186 DLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEF 245
DL++G +F+RFQT + + + D R V+SYGPCQ PTLGF V+RY I + E+F
Sbjct: 181 DLKVGVAFSRFQTSYFQGKYQN--LDCR--VISYGPCQTPTLGFCVQRYMHINTFKPEKF 236
Query: 246 WTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPL 305
W + + + W R LFD +A + ++ V+ TA V V +++++K P L
Sbjct: 237 WALRPYIRKDGYELQLEWERRRLFDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGL 296
Query: 306 STIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHP 365
+T+ L K AS + M +AE LY GFISYPRTE+ ++ S + ++ Q+ +P
Sbjct: 297 NTVNLLKVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFTDTLRAQVSNP 356
Query: 366 DWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHF 425
WG Y QRLL + P SG D HPPI P + ++ E D ++LY+ V +HF
Sbjct: 357 VWGGYVQRLLSDG---FHMPKSGT-DAGDHPPITPMRAAT-EVMVGGDAWRLYQYVCQHF 411
Query: 426 LACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFI 485
L VS T VE++I GE F +G+ + K + + + + +P+++ G++
Sbjct: 412 LGTVSPNCKYIRTKVELSIGGETFHCTGQRVTEKGFTAIMPWSAVDEKKLPSFLKGERIE 471
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
+ L G T PP L+E++L+S M+K GIGTDA++ HI + +R Y + + P
Sbjct: 472 VLRVELYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVP 531
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDAR 605
T +G L+ GY + +L P++RS +E + V+ G + V+ + +QQ + F
Sbjct: 532 TALGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKFSYF- 590
Query: 606 LKKVKLLEAMGIFFE-RWSGGEDQQAAGEVVRQCGIC 641
V+ +E M FE ++S D +G + +CG C
Sbjct: 591 ---VQQIEHMDALFEAQFSPLAD---SGRALSKCGKC 621
Score = 90 (36.7 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 32/116 (27%), Positives = 47/116 (40%)
Query: 653 DGNLMVGCLAFPQ-------CRNAVWLPGSVSEAAVTTNTCNSCTPGPVYLIQFKFRQHE 705
+G L++ ++FP+ C V LP T+N C C + I F +
Sbjct: 743 EGTLVLDPVSFPKWKLNCNLCSCIVLLPEGAHRITTTSNRCPECDSA-IIEIDFNKKTTP 801
Query: 706 IPPGFNVNHLGCIGGCDETLRQLIEI------CGTGSRIPARGRGPTASSNNGQQS 755
+ G + H GC+ CDE L L+E+ G R RGRG G +S
Sbjct: 802 LENGATL-HQGCVL-CDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGSKS 855
>UNIPROTKB|O95985 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003916
"DNA topoisomerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
KO:K03165 EMBL:AF053082 EMBL:D87012 EMBL:AF017146 EMBL:AF125216
EMBL:CR456596 EMBL:BC002432 IPI:IPI00216815 IPI:IPI00216816
IPI:IPI00292671 RefSeq:NP_003926.1 UniGene:Hs.436401
ProteinModelPortal:O95985 SMR:O95985 IntAct:O95985
MINT:MINT-1458306 STRING:O95985 PhosphoSite:O95985 PaxDb:O95985
PRIDE:O95985 DNASU:8940 Ensembl:ENST00000357179
Ensembl:ENST00000398793 GeneID:8940 KEGG:hsa:8940 UCSC:uc002zvs.3
CTD:8940 GeneCards:GC22M022309 HGNC:HGNC:11993 HPA:CAB009198
MIM:603582 neXtProt:NX_O95985 PharmGKB:PA36674 HOGENOM:HOG000184378
HOVERGEN:HBG059857 InParanoid:O95985 OMA:GNKERDE OrthoDB:EOG4ZPDTK
PhylomeDB:O95985 ChEMBL:CHEMBL3127 GenomeRNAi:8940 NextBio:33622
ArrayExpress:O95985 Bgee:O95985 CleanEx:HS_TOP3B
Genevestigator:O95985 GermOnline:ENSG00000100038 Uniprot:O95985
Length = 862
Score = 995 (355.3 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 240/640 (37%), Positives = 351/640 (54%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 122
Query: 129 ENIAFEVIE-VCRAVN-CH---LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V +N H + RARFS++ D +I A+ L +P+ A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + + ++ + W R +FD A + M E A V ++EK K P
Sbjct: 239 TYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP W +RLL A G+ R P G HD HPPI P K S+ E+ D ++LYE +
Sbjct: 359 NHPYWADTVKRLL--AEGINR-PRKG-HDAGDHPPITPMK-SATEAELGGDAWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS ++ + I E+F+ SG+ +L+ + +V ++S +PT G
Sbjct: 414 RHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 474 DAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K F
Sbjct: 534 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKF 593
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ E M + F + A G+ + +CG C
Sbjct: 594 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
Score = 101 (40.6 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 29/120 (24%), Positives = 48/120 (40%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C +C + V+ +TC+ C
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVAC---NKCNVVAHCFENAHRVRVSADTCSVCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H+GC+ CD ++L+E+ S P GP G+
Sbjct: 778 -LLDVDFNKAKSPLPGDETQHMGCVF-CDPVFQELVELKHAASCHPMHRGGPGRRQGRGR 835
>SGD|S000004224 [details] [associations]
symbol:TOP3 "DNA Topoisomerase III" species:4932
"Saccharomyces cerevisiae" [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0031422
"RecQ helicase-Topo III complex" evidence=IDA;IPI] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0007004 "telomere maintenance
via telomerase" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0000018 "regulation of DNA recombination" evidence=IMP]
[GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 SGD:S000004224 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 EMBL:BK006945
EMBL:U19027 GO:GO:0007131 GO:GO:0007004 GO:GO:0007064 GO:GO:0000018
GO:GO:0006265 PROSITE:PS50880 GO:GO:0031422 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
HOGENOM:HOG000184377 OrthoDB:EOG4KWP2D EMBL:M24939 PIR:A33169
RefSeq:NP_013335.1 ProteinModelPortal:P13099 DIP:DIP-2912N
IntAct:P13099 MINT:MINT-442624 STRING:P13099 PaxDb:P13099
PeptideAtlas:P13099 EnsemblFungi:YLR234W GeneID:850935
KEGG:sce:YLR234W CYGD:YLR234w OMA:CCSEDAK NextBio:967378
Genevestigator:P13099 GermOnline:YLR234W Uniprot:P13099
Length = 656
Score = 726 (260.6 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 164/420 (39%), Positives = 235/420 (55%)
Query: 216 VLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC--SHKSEEGTATFSWMRGHLFDYTS 273
V+SYG CQFPTLGFVV+R+ I+ EEFW I +K GT TF W RGHLFD S
Sbjct: 228 VVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGTTTFQWDRGHLFDRLS 287
Query: 274 AVIIYEMCVQEP--TATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAED 331
+ YE C++ A V ++ + KY P PL+T+EL+K +RY R++++ ++ AE
Sbjct: 288 VLTFYETCIETAGNVAQVVDLKSKPTTKYRPLPLTTVELQKNCARYLRLNAKQSLDAAEK 347
Query: 332 LYQAGFISYPRTETDSFSSGTNLHGIVQEQI--------GHPDWGPYAQRLL--DHAAG- 380
LYQ GFISYPRTETD+F +L +V++Q G W YA LL ++ +
Sbjct: 348 LYQKGFISYPRTETDTFPHAMDLKSLVEKQAQLDQLAAGGRTAWASYAASLLQPENTSNN 407
Query: 381 -LWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI 439
++ P SG HDDKAHPPIHP E+ S ++YE V RHFLAC S+ A G
Sbjct: 408 NKFKFPRSGSHDDKAHPPIHPIVSLGPEANVSPVERRVYEYVARHFLACCSEDAKGQSMT 467
Query: 440 VEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRP 498
+ ++ A E FS SG V+L +N+LDVY + W +P + +G T P
Sbjct: 468 LVLDWAVERFSASGLVVLERNFLDVYPWARWETTKQLPRLEMNALVDIAKAEMKAGTTAP 527
Query: 499 PPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDA---NTRFAPTNIGEALVMG 555
P ++E++L+ MD GIGTDAT+ +HI K+ R Y + T PT +G +LV G
Sbjct: 528 PKPMTESELILLMDTNGIGTDATIAEHIDKIQVRNYVRSEKVGKETYLQPTTLGVSLVHG 587
Query: 556 YDDMGYE--LWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLE 613
++ +G E KP R ME D+K++ G+ SK DV+ + +++ + + K LL+
Sbjct: 588 FEAIGLEDSFAKPFQRREMEQDLKKICEGHASKTDVVKDIVEKYRKYWHKTNACKNTLLQ 647
Score = 367 (134.2 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 101/274 (36%), Positives = 146/274 (53%)
Query: 8 INVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYS----IR-GQPCHMLMT 62
+ VL VAEK S+AK+V+ IL + R+ Y K Y+F +S R G C + MT
Sbjct: 1 MKVLCVAEKNSIAKAVSQILGGGRSTS-RDSGYMYVKNYDFMFSGFPFARNGANCEVTMT 59
Query: 63 SVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWL 122
SV GHL +DF W C +L+ AP+ + + ++K I ++ EAR +L++W
Sbjct: 60 SVAGHLTGIDFSHDSHGWGKCAIQELFDAPLNEIMNNNQKKIASNIKREARNADYLMIWT 119
Query: 123 DCDREGENIAFEVIEVCRAVNCHLV----LRRARFSALIDREIHQAVQNLVDPNQWFADA 178
DCDREGE I +E+ + + N L+ + RA FS L + I A +N + A
Sbjct: 120 DCDREGEYIGWEIWQEAKRGN-RLIQNDQVYRAVFSHLERQHILNAARNPSRLDMKSVHA 178
Query: 179 VDARQEIDLRIGASFTRFQTMLLKNF--HIDSVTDD--------RN--LVLSYGPCQFPT 226
V R EIDLR G +FTR T L+N + ++T D +N V+SYG CQFPT
Sbjct: 179 VGTRIEIDLRAGVTFTRLLTETLRNKLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPT 238
Query: 227 LGFVVERYWEIQAHESEEFWTINCSHKSEEGTAT 260
LGFVV+R+ I+ EEFW I ++++ T
Sbjct: 239 LGFVVDRFERIRNFVPEEFWYIQLVVENKDNGGT 272
>UNIPROTKB|F1RL05 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9823 "Sus scrofa"
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 KO:K03165 CTD:8940 OMA:GNKERDE
EMBL:CU468588 RefSeq:XP_003359220.1 Ensembl:ENSSSCT00000011039
GeneID:100155140 KEGG:ssc:100155140 ArrayExpress:F1RL05
Uniprot:F1RL05
Length = 859
Score = 984 (351.4 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
Identities = 233/640 (36%), Positives = 353/640 (55%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + +G + ++E+ + GQP H MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIARILSRGN-MSSHKGLNGTCSVHEYTGTFAGQPVHFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEG 122
Query: 129 ENIAFEVIE-VCRAVN-CH---LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V +N H + RARFS++ D +I A+ +L +P+ A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNQAHGSEKTVFRARFSSITDTDICNAMAHLGEPDHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + + ++ + W R +FD A + M E A V ++EK K P
Sbjct: 239 TYWVLQAKVNTDQDRSLLLDWDRVRVFDREIAQMFLNMTKPEKEAQVEATSKKEKTKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASSALGMGPQHAMQTAERLYTQGYISYPRTETTHYPESFDLKGPLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP W ++LL A G+ R P G HD HPPI P + S+ E+ + ++LYE +
Sbjct: 359 NHPYWADTVKQLL--AEGINR-PRKG-HDAGDHPPITPMR-SATEAELGGEAWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT G
Sbjct: 414 RHFIATVSHDCRYLQSTISFRIGPERFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQKG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y + ++
Sbjct: 474 DTFAVGEVKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVVVESGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K F
Sbjct: 534 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDIFKRKF 593
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ E M + F + A G+ + +CG C
Sbjct: 594 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
Score = 102 (41.0 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C +C + V+++TC++C
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWRVAC---NRCNVVAHCFENAHRVRVSSDTCSTCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H+GC+ CD ++L+E+ S P RGP G+
Sbjct: 778 -LLDVDFNKAKSPLPGDATQHIGCVF-CDPIFQELVELKHAASCHPMH-RGPGRRQGRGR 834
>UNIPROTKB|E2R770 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9615 "Canis lupus
familiaris" [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 OMA:GNKERDE EMBL:AAEX03014902 RefSeq:XP_534771.2
Ensembl:ENSCAFT00000024557 GeneID:477576 KEGG:cfa:477576
Uniprot:E2R770
Length = 862
Score = 973 (347.6 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 234/640 (36%), Positives = 351/640 (54%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + +G + ++E++ + GQP MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGN-MSSHKGLNGTCSVHEYSGTFAGQPVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E + C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGKGCDYIVLWLDCDKEG 122
Query: 129 ENIAFEVIE-VCRAVN-CHL---VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V +N H + RARFS++ D +I A+ L +P+ A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNPTHSGEKTVFRARFSSITDTDICAAMARLGEPDHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCS-HKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + + ++ + W R +FD A + M E A V ++EK K P
Sbjct: 239 TYWVLQAKVNADKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M+ AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGPLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
HP W +RLL A G+ R P G HD HPPI P + S+ E+ + ++LYE +
Sbjct: 359 NHPYWADTVKRLL--AEGINR-PRKG-HDAGDHPPITPMR-SATEAELGSEAWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS ++ + I E F+ +G+ +++ + ++ ++S +PT G
Sbjct: 414 RHFIATVSYDCKYLQSTISFRIGPEHFTCTGKTVISPGFTEIMPWQSVPLEESLPTCQRG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 474 DCFPVSEMKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + ++ G VL + L K F
Sbjct: 534 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKF 593
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ E M + F + A G+ + +CG C
Sbjct: 594 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
Score = 99 (39.9 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 30/125 (24%), Positives = 48/125 (38%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + V C +C + V+ +TC +C
Sbjct: 723 IGQCVECESGVLVLDPTSGPKWKVAC---NKCNVVAHCFENAYRVRVSADTCPTCEAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H GC+ CD ++L+E+ S P GP G+
Sbjct: 778 -LLAVDFNKAKSPLPGDETQHTGCVF-CDPVFQELVELKHAASCHPMHRGGPGRRQGRGR 835
Query: 754 QSNHR 758
R
Sbjct: 836 ARGRR 840
>UNIPROTKB|Q5ZK71 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 GeneTree:ENSGT00530000063430
KO:K03165 CTD:8940 HOGENOM:HOG000184378 HOVERGEN:HBG059857
OrthoDB:EOG4ZPDTK EMBL:AADN02034767 EMBL:AB215105 EMBL:AJ720213
IPI:IPI00570659 RefSeq:NP_001006181.1 UniGene:Gga.16362
STRING:Q5ZK71 Ensembl:ENSGALT00000002250 GeneID:416771
KEGG:gga:416771 NextBio:20820183 Uniprot:Q5ZK71
Length = 862
Score = 971 (346.9 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
Identities = 236/640 (36%), Positives = 347/640 (54%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGVCSVHEYTGSFIGQSAHFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y W DPA+L+ AP K K + K L+ E R C +VLWLDCD+EG
Sbjct: 63 TLDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDSIVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V + ++ RA+FS++ D +I A+ +L +PN A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNKSPSTERMIYRAKFSSITDTDICNAMNHLGEPNLNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + E E + T W R +FD A + + A V V ++EK+K P
Sbjct: 239 TYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQMFLNITKMAKEAKVESVSKKEKVKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGCLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+P W + LL G+ R P G HD HPPI P K ++ E D ++LYE +
Sbjct: 359 NNPYWAETVKALLSE--GINR-PRKG-HDAGDHPPITPMKAAT-EVELGGDSWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS +T + +I E F+ G+V+ + + ++ + S +P+ G
Sbjct: 414 RHFIATVSADCKYLQTNISFSIGPERFNCVGKVVTSPGFTEIMPWHSIALEESLPSCEKG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 474 DLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGR 533
Query: 542 RFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
R PTN+G LV GY + EL P +RS +E + +++G + VL + L K F
Sbjct: 534 RLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANYHQVLEHTLDIFKRKF 593
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
+ E M + F + A G+ + +CG C
Sbjct: 594 HYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 627
Score = 94 (38.1 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
Identities = 29/125 (23%), Positives = 46/125 (36%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + + C +C V + + V+ TC C
Sbjct: 723 IGQCVECENGVLVLDSTSGPKWKMAC---NKCNVIVHFFENAHKVRVSPETCELCDAA-- 777
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H GC+ CD + L+E+ R P G G+
Sbjct: 778 -LVDVDFNKAKSPLPGDETQHSGCVF-CDPVFQDLVELKHAAMRHPMHRGGQGKRQGRGR 835
Query: 754 QSNHR 758
R
Sbjct: 836 GKGRR 840
>UNIPROTKB|E1BQG8 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059
GO:GO:0000793 GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 GeneTree:ENSGT00530000063430
OMA:QMFLNIT EMBL:AADN02034767 IPI:IPI00820597
Ensembl:ENSGALT00000040019 ArrayExpress:E1BQG8 Uniprot:E1BQG8
Length = 863
Score = 962 (343.7 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 236/641 (36%), Positives = 347/641 (54%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ + R+G + ++E+ S GQ H MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGN-MSSRKGLNGVCSVHEYTGSFIGQSAHFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y W DPA+L+ AP K K + K L+ E R C +VLWLDCD+EG
Sbjct: 63 TLDFIGKYNSWDKVDPAELFSKAPTEKKEANPKLTMVKFLQVEGRGCDSIVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V + ++ RA+FS++ D +I A+ +L +PN A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNKSPSTERMIYRAKFSSITDTDICNAMNHLGEPNLNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINCSHKSE-EGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPP 302
+W + E E + T W R +FD A + + A V V ++EK+K P
Sbjct: 239 TYWVLQAKVNPEKESSLTLDWDRVRVFDREIAQMFLNITKMAKEAKVESVSKKEKVKQRP 298
Query: 303 YPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQI 362
L+T+E+ + AS M +H M++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 LALNTVEMLRVASAALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDLKGCLRQQA 358
Query: 363 GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVV 422
+P W + LL G+ R P G HD HPPI P K ++ E D ++LYE +
Sbjct: 359 NNPYWAETVKALLSE--GINR-PRKG-HDAGDHPPITPMKAAT-EVELGGDSWRLYEYIT 413
Query: 423 RHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHG 481
RHF+A VS +T + +I E F+ G+V+ + + ++ + S +P+ G
Sbjct: 414 RHFIATVSADCKYLQTNISFSIGPERFNCVGKVVTSPGFTEIMPWHSIALEESLPSCEKG 473
Query: 482 QQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANT 541
F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y ++
Sbjct: 474 DLFPVGEIKLLEMQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGR 533
Query: 542 RFAPTNIGEALVMGYDDM-GYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKAC 600
R PTN+G LV GY + EL P +RS +E + +++G + VL + L K
Sbjct: 534 RLKPTNLGIVLVHGYYKIVDAELVLPTIRSAVEKQLNLIALGKANYHQVLEHTLDIFKRK 593
Query: 601 FLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGIC 641
F + E M + F + A G+ + +CG C
Sbjct: 594 FHYFVDSIAGMDELMEVSFSPLA------ATGKPLSRCGKC 628
Score = 94 (38.1 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 29/125 (23%), Positives = 46/125 (36%)
Query: 635 VRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTPGPV 694
+ QC C+ +VL + + C +C V + + V+ TC C
Sbjct: 724 IGQCVECENGVLVLDSTSGPKWKMAC---NKCNVIVHFFENAHKVRVSPETCELCDAA-- 778
Query: 695 YLIQFKFRQHEIP-PGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNNGQ 753
L+ F + + P PG H GC+ CD + L+E+ R P G G+
Sbjct: 779 -LVDVDFNKAKSPLPGDETQHSGCVF-CDPVFQDLVELKHAAMRHPMHRGGQGKRQGRGR 836
Query: 754 QSNHR 758
R
Sbjct: 837 GKGRR 841
>ZFIN|ZDB-GENE-070705-37 [details] [associations]
symbol:top3b "topoisomerase (DNA) III beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
ZFIN:ZDB-GENE-070705-37 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:BX005237 EMBL:CR933528
IPI:IPI01016652 ProteinModelPortal:F1QNX4
Ensembl:ENSDART00000030553 Bgee:F1QNX4 Uniprot:F1QNX4
Length = 862
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 227/604 (37%), Positives = 335/604 (55%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILSK R+G + ++E+ S GQ MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSKGS-CSTRKGLNGACSVHEYMGSFTGQNVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLYH-APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y W DPA+L+ AP K K ++ K L+ EA+ C ++VLWLDCD+EG
Sbjct: 63 SLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDKEG 122
Query: 129 ENIAFEVIEVCRAV-----NCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ + V + RA+FS++ D +I A+ L +PN+ A +VDARQ
Sbjct: 123 ENICFEVLDAIQPVMNKPYGNERTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT K F D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQT---KYFQGKYGNLDSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTINC--SHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYP 301
+W + ++ ++ T W R +FD + M A V V ++EK K
Sbjct: 239 AYWVVQAKVANFGKDSPLTLDWDRVRVFDRDIGQMFVNMAKTAKEARVDSVTKKEKAKQR 298
Query: 302 PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQ 361
P L+T+E+ + AS M +HTM++AE LY G+ISYPRTET + +L G +++Q
Sbjct: 299 PLALNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLKQQ 358
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELV 421
WG + LL G+ R P G D HPPI P + +S E+ D ++LY+ +
Sbjct: 359 ANSTFWGETVKALLSE--GINR-PRKGA-DAGDHPPITPMRAAS-ENELGSDGWRLYDYI 413
Query: 422 VRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGGLV----IPT 477
RHF+A VS +T + +IA E F+ SG+ +++ Y +V W G+ +P
Sbjct: 414 TRHFIATVSPDCKYLQTTISFSIATEGFTCSGKTLISAGYTEVM---PWQGIAQEEALPV 470
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G+ F + L T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 471 CERGEMFTVDEIKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTV 530
Query: 538 DANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQM 597
++ + PTN+G LV GY + +L P +RS +E + +++G + VL + L
Sbjct: 531 ESGRKLKPTNLGIVLVHGYYKIDADLVLPTIRSAVEKQLTLIALGKANFQQVLQHTLDIF 590
Query: 598 KACF 601
K F
Sbjct: 591 KRKF 594
>UNIPROTKB|H7BZN5 [details] [associations]
symbol:TOP3A "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 ProteinModelPortal:H7BZN5
Ensembl:ENST00000412083 Uniprot:H7BZN5
Length = 384
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 187/375 (49%), Positives = 258/375 (68%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 11 VLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 69
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
DF ++RKW SC+P L+ A + K+ PE+ DIKKTLE E R+CQ LV+W DCDREGE
Sbjct: 70 AHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGE 129
Query: 130 NIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRI 189
NI FE+I VC+AV +L + RARFS + + A +NL +P+Q +DAVD RQE+DLRI
Sbjct: 130 NIGFEIIHVCKAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLRI 189
Query: 190 GASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTIN 249
GA+FTRFQT+ L+ + + + ++SYG CQFPTLGFVVER+ IQA E F I
Sbjct: 190 GAAFTRFQTLRLQRIFPEVLAEQ---LISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIK 246
Query: 250 CSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIE 309
+H ++G F+W R LF++T+ +++Y++CV++P ATV +VR + K K+ P L T+E
Sbjct: 247 VTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVE 306
Query: 310 LEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGP 369
LEK ASR R++++ TM++AE LY G+ISYPRTET+ F NL +V++Q P WG
Sbjct: 307 LEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGA 366
Query: 370 YAQRLLDHAAGLWRN 384
+AQ +L+ RN
Sbjct: 367 FAQSILERGGPTPRN 381
>FB|FBgn0026015 [details] [associations]
symbol:Top3beta "Topoisomerase 3beta" species:7227
"Drosophila melanogaster" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS;NAS] [GO:0003916 "DNA topoisomerase
activity" evidence=IDA;NAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0000737 "DNA catabolic process,
endonucleolytic" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013826
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE014298 GO:GO:0004520
GO:GO:0000737 GO:GO:0006265 PROSITE:PS50880 SMART:SM00493
GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550
GeneTree:ENSGT00530000063430 KO:K03165 Gene3D:1.10.290.10
EMBL:AF099909 EMBL:BT016116 RefSeq:NP_511059.2 UniGene:Dm.2946
ProteinModelPortal:O96651 DIP:DIP-22155N STRING:O96651 PaxDb:O96651
PRIDE:O96651 EnsemblMetazoa:FBtr0070930 GeneID:31565
KEGG:dme:Dmel_CG3458 CTD:31565 FlyBase:FBgn0026015
InParanoid:O96651 OMA:PPFVQGT OrthoDB:EOG4QRFJZ PhylomeDB:O96651
GenomeRNAi:31565 NextBio:774220 Bgee:O96651 GermOnline:CG3458
Uniprot:O96651
Length = 875
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 224/640 (35%), Positives = 346/640 (54%)
Query: 9 NVLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ-PCHMLMTSVTGH 67
+VL VAEKPS+A S+AGILS N + G +E+ + R + H MTSV GH
Sbjct: 3 SVLMVAEKPSLAASLAGILS-NGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGH 61
Query: 68 LMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
+M LDF+++Y W DP L+ K K++++K L EAR C +LVLWLDCD+E
Sbjct: 62 VMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKE 121
Query: 128 GENIAFEVIEVCRAV--NCHL--VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
GENI FEV++ + V N + V RA FSA+ +++I +A++ L PN+ A +VDARQ
Sbjct: 122 GENICFEVMDAVKHVINNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQ 181
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT ++ + D D +L+ SYGPCQ PTLGF V+R+ +IQ + E
Sbjct: 182 ELDLRIGCAFTRFQTKFFQDRYGDL---DSSLI-SYGPCQTPTLGFCVKRHDDIQTFKPE 237
Query: 244 EFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPY 303
FW + E T W RG +F A+++ + ATV V +E K P
Sbjct: 238 SFWHLQLLAGQPE--VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQ 295
Query: 304 PLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIVQEQIG 363
L+T+EL + S + M++AE LY G+ISYPRTET+ + + +L ++
Sbjct: 296 ALNTVELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKP 355
Query: 364 HPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLYELVVR 423
D+G A+ +L G + P G D HPPI P K + S + +D +++YE + R
Sbjct: 356 SADFGEEARSIL----GDIQTPRKG-KDAGDHPPITPMKLGN-RSDFDRDTWRVYEFICR 409
Query: 424 HFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQ 482
HF+ VS+ T ++++ E FS + V++ + V + ++G P +V G
Sbjct: 410 HFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKVMTWSAFGKDEPQPPFVQGT 469
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP L+E++L++ M++ GIGTDA++ HI + R Y + +
Sbjct: 470 QVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPVHINNICQRNYVHIENGRK 529
Query: 543 FAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFL 602
PT +G LV GY + EL P +R+ +E + ++ G+ + DVL + ++ K F+
Sbjct: 530 LMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKFM 589
Query: 603 DARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQ 642
VK +++M FE +G+ +CG C+
Sbjct: 590 YF----VKNIDSMDALFE--VSFSPLAESGKAHSRCGKCR 623
>WB|WBGene00012995 [details] [associations]
symbol:Y48C3A.14 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
GeneTree:ENSGT00530000063430 EMBL:AL117203 GeneID:174978
KEGG:cel:CELE_Y48C3A.14 CTD:174978 RefSeq:NP_001254381.1
ProteinModelPortal:H1UBJ9 SMR:H1UBJ9 EnsemblMetazoa:Y48C3A.14a
WormBase:Y48C3A.14a OMA:QMFLNIT Uniprot:H1UBJ9
Length = 869
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 235/678 (34%), Positives = 355/678 (52%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKP +A S+A +LS Q + R+G + + E++ G+ +TS GH+M
Sbjct: 5 VLMVAEKPLLADSIANLLSNGQAKK-RKGWNGVCSVSEYDGQFNGRAARFKVTSTCGHVM 63
Query: 70 ELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGE 129
LDF ++ W DPA+LY AP ++ K + + L EA+ +LVLWLDCD+EGE
Sbjct: 64 SLDFPPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCDKEGE 123
Query: 130 NIAFEVIEVCRAVNCHLV---------LRRARFSALIDREIHQAVQNLVDPNQWFADAVD 180
NI FEVI+ AV C + + RA FSA+ +++I A++NL P+Q + +VD
Sbjct: 124 NICFEVID---AVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSVD 180
Query: 181 ARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
ARQE+DLRIG SFTRFQT + + D D N V+SYGPCQ PTLGF V R+ +I
Sbjct: 181 ARQELDLRIGCSFTRFQTKFFQGKYGDL---DSN-VISYGPCQTPTLGFCVTRHDQIVQF 236
Query: 241 ESEEFWTINCSHKSEEGTATFS--WMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKL 298
+ E++W + + + + FS W RG +FD A + + + T V V ++E
Sbjct: 237 KPEQYWVLKTNFTTSDDGQIFSPEWQRGRIFDAEVARVFVDRIKKCHTGLVLDVSKKEAR 296
Query: 299 KYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTNLHGIV 358
K P L+T+EL + AS MS TM VAE LY G+ISYPRTET ++S+ +L G +
Sbjct: 297 KERPCALNTVELMRVASSSLGMSPSTTMHVAEALYTQGYISYPRTETTAYSANFDLTGTL 356
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRWSQDHYKLY 418
+ G WG ++L A G+ R P SG D HPPI P + + G S D ++Y
Sbjct: 357 KILAGDRKWGSVVSQVL--ADGIKR-PKSGV-DKGDHPPITPMRPNHGGL--SGDMSRIY 410
Query: 419 ELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYRFESWGG-LVIPT 477
E V +HF+A + + V T V+++ E F+ G+ ++ + V + S +P
Sbjct: 411 EYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQGKNVVEPGFTAVMPWLSVEEECSVPK 470
Query: 478 YVH--GQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYA 535
+ G + + + T PP L+EA+L++ M+K GIGTDA++ HI + R Y
Sbjct: 471 SLQQIGAKIELQNAEIQARETTPPGYLTEAELITLMEKHGIGTDASIPVHINTITQRNYV 530
Query: 536 IKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQ 595
++ R PT +G+ LV GY + EL P +R+ +E + V+ G DV + L+
Sbjct: 531 TVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKADYLDVKNHALK 590
Query: 596 QMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGN 655
+ F V + A+ FE + G+ +CG C+ M L +++
Sbjct: 591 MFEMKFQYF----VTNIPAVDTLFE--ASFTTLSDTGKPFSRCGKCRRY-MKLVQTKPQR 643
Query: 656 LMVGCLAFPQCRNAVWLP 673
L C P C+ +P
Sbjct: 644 LY--C---PTCQETYAVP 656
>UNIPROTKB|B4DSJ0 [details] [associations]
symbol:TOP3A "cDNA FLJ56242, highly similar to DNA
topoisomerase 3-alpha (EC 5.99.1.2)" species:9606 "Homo sapiens"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000380 InterPro:IPR001878 InterPro:IPR010666
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
Pfam:PF01131 Pfam:PF01396 Pfam:PF06839 SMART:SM00343 GO:GO:0005694
GO:GO:0008270 GO:GO:0006265 EMBL:AC127537 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 UniGene:Hs.592115 HGNC:HGNC:11992 EMBL:AK299764
IPI:IPI01012294 SMR:B4DSJ0 STRING:B4DSJ0 Ensembl:ENST00000540524
HOVERGEN:HBG103257 Uniprot:B4DSJ0
Length = 531
Score = 617 (222.3 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 124/306 (40%), Positives = 186/306 (60%)
Query: 455 VILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKA 514
+ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP LL+EADL++ M+K
Sbjct: 1 MILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKH 60
Query: 515 GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMES 574
GIGTDAT +HI+ + R Y + RF P ++G LV GYD MGYE+ KP+LR+ +E+
Sbjct: 61 GIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEA 120
Query: 575 DMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ----A 630
D+K + G K K VL +Q+ K F++A K KL EA+ +F + Q+ A
Sbjct: 121 DLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPA 180
Query: 631 AGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCT 690
E +R+C C + +MVLK ++G + C+ FP+CR+AVWLP SV EA+ ++ C C
Sbjct: 181 MPEPIRKCPQCNK-DMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQ 239
Query: 691 PGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSN 750
P PVY ++ KF++ +PP + + CIGGCD+TLR+++++ +G P R P+
Sbjct: 240 PHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDLRFSGG--PPRASQPSGRLQ 297
Query: 751 NGQQSN 756
Q N
Sbjct: 298 ANQSLN 303
Score = 71 (30.1 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 740 ARGRGPTASSNNGQQSNHRQRACIYCQQMGHSSSDCP 776
AR + P ASS++ + + R C C Q GH+ CP
Sbjct: 492 ARSKRPRASSSDMGSTAKKPRKCSLCHQPGHTRPFCP 528
>UNIPROTKB|H0Y6W0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00437 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 ProteinModelPortal:H0Y6W0 Ensembl:ENST00000457270
Uniprot:H0Y6W0
Length = 525
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 147/432 (34%), Positives = 223/432 (51%)
Query: 212 DRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCS-HKSEEGTATFSWMRGHLFD 270
D +L+ S+GPCQ PTLGF VER+ +IQ+ + E +W + + ++ + W R +FD
Sbjct: 3 DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFD 61
Query: 271 YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE 330
A + M E A V ++EK K P L+T+E+ + AS M +H M+ AE
Sbjct: 62 REIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAE 121
Query: 331 DLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH 390
LY G+ISYPRTET + +L G +++Q HP W +RLL A G+ R P G H
Sbjct: 122 RLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLL--AEGINR-PRKG-H 177
Query: 391 DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS 450
D HPPI P K S+ E+ D ++LYE + RHF+A VS ++ + I E+F+
Sbjct: 178 DAGDHPPITPMK-SATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFT 236
Query: 451 TSGRVILAKNYLDVYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
SG+ +L+ + +V ++S +PT G F + + T PP L+EA+L++
Sbjct: 237 CSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELIT 296
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
M+K GIGTDA++ HI + R Y ++ R PTN+G LV GY + EL P +R
Sbjct: 297 LMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIR 356
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGEDQQ 629
S +E + ++ G VL + L K F + E M + F +
Sbjct: 357 SAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSIAGMDELMEVSFSPLA------ 410
Query: 630 AAGEVVRQCGIC 641
A G+ + +CG C
Sbjct: 411 ATGKPLSRCGKC 422
>UNIPROTKB|C9JEI7 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR013497 InterPro:IPR013824
Pfam:PF01131 SMART:SM00436 Pfam:PF01751 InterPro:IPR006171
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 SMART:SM00493
GO:GO:0003917 Gene3D:1.10.460.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000184378 IPI:IPI01014062 ProteinModelPortal:C9JEI7
STRING:C9JEI7 Ensembl:ENST00000424393 ArrayExpress:C9JEI7
Bgee:C9JEI7 Uniprot:C9JEI7
Length = 246
Score = 499 (180.7 bits), Expect = 3.8e-47, P = 3.8e-47
Identities = 112/245 (45%), Positives = 156/245 (63%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 122
Query: 129 ENIAFEVIE-VCRAVN-CH---LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQ 183
ENI FEV++ V +N H + RARFS++ D +I A+ L +P+ A +VDARQ
Sbjct: 123 ENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQ 182
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
E+DLRIG +FTRFQT + + D D +L+ S+GPCQ PTLGF VER+ +IQ+ + E
Sbjct: 183 ELDLRIGCAFTRFQTKYFQGKYGDL---DSSLI-SFGPCQTPTLGFCVERHDKIQSFKPE 238
Query: 244 EFWTI 248
+W +
Sbjct: 239 TYWVL 243
>TIGR_CMR|GSU_2549 [details] [associations]
symbol:GSU_2549 "DNA topoisomerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018
KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 TIGRFAMs:TIGR01051
ProtClustDB:PRK06599 RefSeq:NP_953595.1 ProteinModelPortal:Q74A42
GeneID:2687248 KEGG:gsu:GSU2549 PATRIC:22027949 OMA:KGKCIPT
BioCyc:GSUL243231:GH27-2526-MONOMER Uniprot:Q74A42
Length = 757
Score = 351 (128.6 bits), Expect = 8.0e-33, Sum P(2) = 8.0e-33
Identities = 139/520 (26%), Positives = 228/520 (43%)
Query: 97 VPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVC--RAVNCHLVLRRARFS 154
+PE K+ I +++E + L+L D DREGE I++ ++ + + +RR F
Sbjct: 57 LPESKRHID-AIKKELKASDSLLLATDPDREGEAISWHLLAALGVKPEKPPVPVRRVVFH 115
Query: 155 ALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRN 214
+ I AV+N D +Q DA AR +D +G + + F L K
Sbjct: 116 EITKDAIVHAVENPRDISQDLVDAQQARSILDYLVGFNLSPF---LWKKIRYG------- 165
Query: 215 LVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEG---TATFSWMRGHL--- 268
LS G Q L + ER EIQA +S+E+WTI E G TA G
Sbjct: 166 --LSAGRVQSVALRLICEREKEIQAFQSQEYWTIGAELAKEGGQKCTANLVEAEGKKLDK 223
Query: 269 FDYTSAVIIYEM--CVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTM 326
FD + ++ T TV KV + E+ + P P +T L++ A+R S++ TM
Sbjct: 224 FDIPDQAAADRLVKALENATFTVDKVTKSERKRTPAPPFTTSTLQQEAARKLGFSAKKTM 283
Query: 327 KVAEDLYQA--------GFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLD 376
A+ LY+ G I+Y RT++ S+ H ++ G P++ R
Sbjct: 284 ATAQKLYEGVAIDEGLVGLITYMRTDSVVLSNQALQEAHQVITSLYG-PEYALAKPRF-- 340
Query: 377 HAAGLWRNPGSGGHDDKAHPPIHPTKFSSGESRW----SQDHYKLYELVVRHFLACVSQP 432
++N + AH + PT + + S D +KLY+L+ + +AC
Sbjct: 341 -----YKNKAKNAQE--AHEAVRPTSIARTPAELKKYLSSDQFKLYDLIWKRTVACQMAE 393
Query: 433 AVGAETIVEINIA-GEVFSTSGRVILAKNYLDVY------RFESWGGLVIPTYVHGQQFI 485
A+ +T V+I G F +G VI ++ +Y + E G +P G+
Sbjct: 394 ALLDQTSVDIGAGKGYRFRAAGTVIRFPGFMKLYIEGVDDQAEEKEG-TLPPLTEGELLK 452
Query: 486 PTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
L + T+PPP +EA L+ +++ GIG +T + LL+R YA D+ RF P
Sbjct: 453 LLKLLPEQHFTQPPPRYTEASLVKTLEEYGIGRPSTYASIMNTLLERKYARLDSK-RFIP 511
Query: 546 TNIGEALVMGYDDMGYELWKP-NLRSMMESDMKEVSVGNK 584
++G +V + + N + +E ++ +VS G K
Sbjct: 512 EDVG-MVVNDLLTNHFTTYVDYNFTATLEEELDQVSRGEK 550
Score = 88 (36.0 bits), Expect = 8.0e-33, Sum P(2) = 8.0e-33
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLP 673
C C+E + KKSR G + C +PQC+ A+W P
Sbjct: 681 CPECKEGELTEKKSRYGKMFYSCNRYPQCKFALWDP 716
Score = 87 (35.7 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 41/146 (28%), Positives = 60/146 (41%)
Query: 560 GYELWKPNLRSMME--SDMKEVSVGNKSKADVLANCLQQM-KACF--LDARL-KKVKLLE 613
G + WKP LR E + + G SKAD+ + C L +L K+ K +
Sbjct: 548 GEKRWKPLLREFWEPFQGLLKQKEGEVSKADLTTEATDEACPECGKPLVVKLGKRGKFIA 607
Query: 614 AMGI-----FFERWSGGEDQQAAGEVVRQ--CGICQESNMVLKKSRDGNLMVGCLAFPQC 666
G + GE ++ A V+ + C C S M++K R G + C A+P C
Sbjct: 608 CSGYKEGCTYTRNIDQGEGREQAEPVLSEEKCDKCG-SPMLIKDGRFGKYLA-CSAYPAC 665
Query: 667 RNAVWLPGSVSEAAVTTNTCNSCTPG 692
+N L V T +TC C G
Sbjct: 666 KNIQPL---VKPKG-TGHTCPECKEG 687
>UNIPROTKB|E7EWY2 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR003602 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013826 InterPro:IPR023406 Pfam:PF01131 PROSITE:PS00396
SMART:SM00437 GO:GO:0005694 GO:GO:0006265 GO:GO:0003917
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 Gene3D:1.10.290.10 EMBL:D87012 HGNC:HGNC:11993
IPI:IPI00908525 ProteinModelPortal:E7EWY2 SMR:E7EWY2
Ensembl:ENST00000413067 ArrayExpress:E7EWY2 Bgee:E7EWY2
Uniprot:E7EWY2
Length = 282
Score = 364 (133.2 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 86/235 (36%), Positives = 128/235 (54%)
Query: 284 EPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRT 343
E A V ++EK K P L+T+E+ + AS M +H M+ AE LY G+ISYPRT
Sbjct: 9 EKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRT 68
Query: 344 ETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF 403
ET + +L G +++Q HP W +RLL A G+ R P G HD HPPI P K
Sbjct: 69 ETTHYPENFDLKGSLRQQANHPYWADTVKRLL--AEGINR-PRKG-HDAGDHPPITPMK- 123
Query: 404 SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLD 463
S+ E+ D ++LYE + RHF+A VS ++ + I E+F+ SG+ +L+ + +
Sbjct: 124 SATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTE 183
Query: 464 VYRFESWG-GLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
V ++S +PT G F + + T PP L+EA+L++ M+K GIG
Sbjct: 184 VMPWQSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIG 238
>TIGR_CMR|BA_3971 [details] [associations]
symbol:BA_3971 "DNA topoisomerase I" species:198094
"Bacillus anthracis str. Ames" [GO:0003917 "DNA topoisomerase type
I activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK05582
RefSeq:NP_846214.1 RefSeq:YP_020610.1 RefSeq:YP_029935.1
HSSP:P06612 ProteinModelPortal:Q81WK2 IntAct:Q81WK2 DNASU:1086791
EnsemblBacteria:EBBACT00000009759 EnsemblBacteria:EBBACT00000014833
EnsemblBacteria:EBBACT00000023600 GeneID:1086791 GeneID:2818374
GeneID:2850818 KEGG:ban:BA_3971 KEGG:bar:GBAA_3971 KEGG:bat:BAS3684
BioCyc:BANT260799:GJAJ-3742-MONOMER
BioCyc:BANT261594:GJ7F-3859-MONOMER Uniprot:Q81WK2
Length = 692
Score = 349 (127.9 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 162/622 (26%), Positives = 258/622 (41%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEV---IEVCRAVNCHLVLRRARFSALI 157
K + K L+ A++ + + L D DREGE IA+ + + V +C +V A+
Sbjct: 60 KGPVLKDLKSAAKKAKKVYLAADPDREGEAIAWHLANTLNVDVESDCRVVFNEITKDAIK 119
Query: 158 DREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ H N+ D DA AR+ +D +G + + +L K L
Sbjct: 120 ESFKHPRAINM-D----LVDAQQARRILDRLVGYNIS---PLLWKKVKKG---------L 162
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT--ATFSWMRGHLFDYTSAV 275
S G Q + ++ER EIQ+ E EEFWTI + T A+F + G T+
Sbjct: 163 SAGRVQSVAVRLIIEREREIQSFEPEEFWTIKTEFVKGKDTFEASFYGVDGEKVQLTNET 222
Query: 276 IIYEMCVQ--EPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
+ E+ Q + +V V ++E+ + P P +T L++ A+R M ++ TM +A+ LY
Sbjct: 223 QVNEIIEQLKDNAFSVENVTRKERKRNPALPFTTSSLQQEAARKLNMRAKKTMMLAQQLY 282
Query: 334 QA---------GFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLW 382
+ G I+Y RT++ S + T + E G G ++
Sbjct: 283 EGIDLGKQGTVGLITYMRTDSTRISETAQTEARTYITEAYGTEYIGAEKKK--------- 333
Query: 383 RNPGSGGHDDKAHPPIHPT----KFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAET 438
S D AH I PT K +S S+D +LY+L+ F+A A+ +T
Sbjct: 334 ETKKSNAQD--AHEAIRPTSVMRKPEELKSFLSRDQLRLYKLIWERFVASQMASAI-MDT 390
Query: 439 IVEINIAGEV-FSTSGRVILAKNYLDVYRFESWGGL-----VIPTYVHGQQFIPTTLTLD 492
+ I V F SG V+ ++ VY G ++P G+ L
Sbjct: 391 VTARLINNNVQFRASGSVVKFPGFMKVYVESKDDGAEEKDKMLPPLEVGETVFSKDLEPK 450
Query: 493 SGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL 552
T+PPP +EA L+ +++ GIG +T ++ + R Y D N RF PT +GE +
Sbjct: 451 QHFTQPPPRYTEARLVRTLEELGIGRPSTYVPTLETIQKRGYVGLD-NKRFVPTELGEIV 509
Query: 553 VMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLL 612
+ + E+ + ME + EV GN + ++ F + RL+K +
Sbjct: 510 IELILEFFPEIINIEFTANMEQSLDEVEEGNANWVKIV----DDFYVGF-EPRLEKAEK- 563
Query: 613 EAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWL 672
E + + GED C +C MV K + G M C FP CRN +
Sbjct: 564 EMREVEIKDEPAGED----------CELCNHP-MVFKMGKYGKFMA-CSNFPDCRNTKPI 611
Query: 673 PGSVSEAAVTTNTCNSCTPGPV 694
V E VT C C G +
Sbjct: 612 ---VKEIGVT---CPKCDKGQI 627
>TIGR_CMR|SPO_3079 [details] [associations]
symbol:SPO_3079 "DNA topoisomerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HOGENOM:HOG000004020 OMA:GKYGPYL
RefSeq:YP_168282.1 ProteinModelPortal:Q5LNX4 GeneID:3196046
KEGG:sil:SPO3079 PATRIC:23379603 Uniprot:Q5LNX4
Length = 880
Score = 247 (92.0 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 113/417 (27%), Positives = 183/417 (43%)
Query: 66 GHLMELDF-DERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDC 124
GH+ +L D H D A RKHV K I L E+ L+L D
Sbjct: 30 GHVRDLPAKDGSVDPEHDFDMTWEVAADSRKHV----KAIADALAEDNE----LILATDP 81
Query: 125 DREGENIAFEVIEVC---RAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA 181
DREGE I++ + E R++ + R F+A+ + +A+QN + +A A
Sbjct: 82 DREGEAISWHLQEALTKRRSIKKGTAVSRVTFNAITKDAVTKAMQNPRQVDMPLVEAYLA 141
Query: 182 RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHE 241
R+ +D +G + + +L + + R S G Q L +VER EI+A +
Sbjct: 142 RRALDYLVGFNLS---PVLWRK-----LPGAR----SAGRVQSVCLRLIVEREMEIEAFK 189
Query: 242 SEEFWTINCSHKSEEGT---ATFSWMRGHLFDYT--SAVIIYEMCVQEPTA---TVTKVR 293
E+W++ ++ G A + G+ D S E+ VQ T+ ++ V
Sbjct: 190 PVEYWSVKALLETPRGQVYEARLVTLAGNKLDKMDISNATQAELAVQAITSRALSIQSVE 249
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSSGTN 353
+ + P P T L++ ASR F M + H M A+ LY+AG I+Y RT D
Sbjct: 250 AKPAARNPSAPFMTSTLQQEASRKFGMGARHCMSAAQRLYEAGHITYMRT--DGIDMAPE 307
Query: 354 LHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT---KFSSGESRW 410
++ I +G A+ + D + +++N + AH I PT K ++
Sbjct: 308 AVMATRDAIADR-FG--AEYVPD-SPRMYKNKAKNAQE--AHECIRPTDMRKDAAALKLK 361
Query: 411 SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIA-GEV-FSTSGRVILAKNYLDVY 465
+D +LY+L+ + +AC A T VEI A G+V +G+V+L +L VY
Sbjct: 362 DEDQRRLYDLIWKRTIACQMAAARLERTTVEIGSADGQVGLRATGQVVLFDGFLRVY 418
Score = 159 (61.0 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 59/195 (30%), Positives = 90/195 (46%)
Query: 496 TRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEAL--- 552
T+PPP +EA L+ M++ GIG +T I + DR Y KD N R P G +
Sbjct: 487 TQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKN-RLIPEEKGRIVTIF 545
Query: 553 VMGY--DDMGYELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDA---RLK 607
++ + +GYE + NL E + +VS G++ D+L + A + R+
Sbjct: 546 LLNFFRQYVGYE-FTANL----EEQLDDVSAGSRDYKDLLGRFWRDFSAAISETSELRIS 600
Query: 608 KV--KLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQ 665
+V KL EA+ + + ED G R C C + LK SR G VGC +P+
Sbjct: 601 EVLDKLDEALAP--QLYPPRED----GSDPRICPKCGTGQLHLKTSRTGGF-VGCGNYPE 653
Query: 666 CRNAVWLPGSVSEAA 680
CR + G ++A
Sbjct: 654 CRYTRPISGDADDSA 668
>TIGR_CMR|BA_1905 [details] [associations]
symbol:BA_1905 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
SMART:SM00493 GO:GO:0003917 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294
HOGENOM:HOG000086847 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 RefSeq:NP_844316.1 RefSeq:YP_018548.1
RefSeq:YP_028031.1 ProteinModelPortal:Q81RY0 DNASU:1086238
EnsemblBacteria:EBBACT00000010748 EnsemblBacteria:EBBACT00000015345
EnsemblBacteria:EBBACT00000022649 GeneID:1086238 GeneID:2818036
GeneID:2849054 KEGG:ban:BA_1905 KEGG:bar:GBAA_1905 KEGG:bat:BAS1767
OMA:GAYMTWA BioCyc:BANT260799:GJAJ-1836-MONOMER
BioCyc:BANT261594:GJ7F-1910-MONOMER InterPro:IPR025589 Pfam:PF13342
Uniprot:Q81RY0
Length = 714
Score = 306 (112.8 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 122/497 (24%), Positives = 219/497 (44%)
Query: 62 TSVTGHLMELDFDERY----RKWHSCDPADLYHAPVRKHVPEDKK---DIKKTLEEEARR 114
T GHL +L E Y +KW S D + + V + K ++ K L +
Sbjct: 43 TWAIGHLTQLCNPEHYHAEWKKW-SLDTLPMIPERFQFEVTKSKYKQFNVVKQLLHNPQV 101
Query: 115 CQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
+ ++ D REGE I +I +C N ++R S+L + I+Q +NL+D +
Sbjct: 102 TE-IIHAGDAGREGELIVRNIINLC---NVQKPMKRLWISSLTKQAIYQGFKNLLDESDT 157
Query: 175 FADAVDA--RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVE 232
+A R D +G + +R ++LLK N V S G Q PTL +V+
Sbjct: 158 INTYYEAYTRSCADWVVGMNASRVFSILLKK-------KGMNDVFSAGRVQTPTLALIVK 210
Query: 233 RYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGH---LFDYTSAVIIYEMCVQEPTATV 289
R EI+ +SE FW + + E W + + L D A I C +P A V
Sbjct: 211 REKEIENFKSEPFWEVFATFNIEGKKYDGKWEKDNESRLQDPDMANKIAAFCQGKP-AVV 269
Query: 290 TKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS 349
+++ + K PP + L+ A++ F+ S + T+ + + LYQ G +SYPR++++ +
Sbjct: 270 KEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKTLDITQALYQKGIVSYPRSDSNYVT 329
Query: 350 SG--TNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSGE 407
G I+Q+ ++ ++ R D H I PT+ +
Sbjct: 330 QGEAATFPDILQKLSQFDEYKGLLPAPVESIMNNKRYVNEKKVTD--HYAIIPTEQVTNP 387
Query: 408 SRWSQDHYKLYELVVRHFLACVSQPAV-GAETIVEINIAGEVFSTSGRVILAKNYLDV-Y 465
SR S D K+Y+++VR +A + A+ TIV + F + G+ + + + V +
Sbjct: 388 SRLSGDEKKIYDMIVRRLIAAHYEVAIFDYTTIVTLVDERAEFISKGKQQIQEGWRKVIF 447
Query: 466 RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDH 525
+ + ++P G++ + + G T+PP +E L++ M AG + ++
Sbjct: 448 QDDKDDETILPIVAEGEEGKVVKVKVKEGKTQPPKRYTEGQLITLMKTAGKYLE---NEE 504
Query: 526 IKKLLDRFYAIKDANTR 542
++K+L + + TR
Sbjct: 505 LEKVLKKTEGLGTEATR 521
Score = 81 (33.6 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 36/151 (23%), Positives = 62/151 (41%)
Query: 502 LSEADLLSCMDKA-GIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMG 560
L +L + K G+GT+AT I L DR Y N +A T+ G+ L+ D
Sbjct: 500 LENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQVYA-TDKGKVLITAIGDK- 557
Query: 561 YELWKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFE 620
L P + + E + E+ G S A + +++ A ++ ++ + + G+ E
Sbjct: 558 -ILASPEMTAKWEQRLAEIGEGTASPATFMEQT-KKLSAKIIEDAVEMSEKWDFTGLHVE 615
Query: 621 RWSGGEDQQAAGEVVRQCGICQESNMVLKKS 651
+ G+ V C C V+ KS
Sbjct: 616 SIERKGSKFTTGKKVGSCKKCDGD--VIDKS 644
>UNIPROTKB|K7EMT6 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
Pfam:PF01131 EMBL:AC127537 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
HGNC:HGNC:11992 Ensembl:ENST00000581536 Uniprot:K7EMT6
Length = 163
Score = 314 (115.6 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 58/119 (48%), Positives = 83/119 (69%)
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII 277
SYG CQFPTLGFVVER+ IQA E F I +H ++G F+W R LF++T+ +++
Sbjct: 2 SYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDHKDGIVEFNWKRHRLFNHTACLVL 61
Query: 278 YEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG 336
Y++CV++P ATV +VR + K K+ P L T+ELEK ASR R++++ TM++AE LY G
Sbjct: 62 YQLCVEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQG 120
>TIGR_CMR|CHY_1794 [details] [associations]
symbol:CHY_1794 "DNA topoisomerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_360614.1
ProteinModelPortal:Q3AB70 STRING:Q3AB70 GeneID:3726845
KEGG:chy:CHY_1794 PATRIC:21276699
BioCyc:CHYD246194:GJCN-1793-MONOMER Uniprot:Q3AB70
Length = 694
Score = 298 (110.0 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 124/511 (24%), Positives = 215/511 (42%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAV-NCHLVLRRARFSALIDR 159
KK++ K L+EEA + + + + D DREGE IA+ V EV N L R F+ +
Sbjct: 59 KKELIKELKEEAAKAEKVYIASDPDREGEAIAWHVKEVLDLEDNGDL---RIEFNEITKD 115
Query: 160 EIHQAVQNL--VDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVL 217
+ QA+ N +D N+ +A AR+ +D +G + +K L
Sbjct: 116 AVLQAIANPRGIDYNRVYAQ--QARRILDRIVGYKLSPLLWRKIKKG------------L 161
Query: 218 SYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGT--ATFSWMRGHLFDYTSAV 275
S G Q + + ER EI+ EE+W++ ++E+ A S + + +
Sbjct: 162 SAGRVQSVAVRLICEREEEIEKFVPEEYWSLTAHLEAEKKPFKAKLSKYQNRKIEIKNKD 221
Query: 276 IIYEMC--VQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
+ + V + V K+ ++ K P P T L++ AS+ S++ TM++A+ LY
Sbjct: 222 EVERIIAEVSQRDFKVVKITKKLTKKSAPEPFITSTLQQEASKRLNFSAKKTMQIAQALY 281
Query: 334 QAGFIS-YPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLL--DHAAGLWRNPGSGGH 390
+ I Y T ++ T+ + +E Y + ++ + G
Sbjct: 282 EGLEIGEYGVTGLVTYIR-TDSTRVAEEAKAKA--AAYIKNTFGEEYVGTEKKTKAPKGK 338
Query: 391 DDKAHPPIHPTKFSSGESRWSQ----DHYKLYELVVRHFLACVSQPAVGAETIVEINIAG 446
AH I PT + Q D YKLY+L+ F+A A T V+I
Sbjct: 339 IQDAHEAIRPTDIEKDPEKIKQYLTPDQYKLYKLIWERFVASQMSDAQYDVTTVDIEAGD 398
Query: 447 EVFSTSGRVILAKNYLDVYRFESWGGLV-----IPTYVHGQQFIPTTLTLDSGVTRPPPL 501
+F +G ++ + +Y+ E G +P + GQ L T PPP
Sbjct: 399 YLFRATGSILRFPGFTKIYQVEEEEGEKEEKEKLPALMEGQSLTLLKLEPKQHFTEPPPR 458
Query: 502 LSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY 561
+EA L+ +++ GIG +T ++ +L R Y KD + PT +G +V +
Sbjct: 459 YTEATLIKALEEKGIGRPSTYAPILETILKRGYVEKDKK-QLKPTELGRIVVDLLKEHFP 517
Query: 562 ELWKPNLRSMMESDMKEVSVGNKSKADVLAN 592
++ + ME + ++ G K+ +VL N
Sbjct: 518 DIIDVEFTAEMEEKLDQIEEGEKNWIEVLRN 548
Score = 73 (30.8 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 629 QAAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW-LPGS 675
Q G +CG +++KKS+ G + GC +P C W LP S
Sbjct: 612 QKTGATCPRCG----GEIIVKKSKKGRVFYGCSNYPSCDFVSWDLPSS 655
Score = 48 (22.0 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSI 52
L + E P+ AK++ L K ++ G R Y F +I
Sbjct: 4 LVIVESPAKAKTIGKFLGKEYVVKASMGHIRDLPTYRFGVNI 45
>UNIPROTKB|F2Z2A5 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005694 GO:GO:0006265
SMART:SM00493 GO:GO:0003917 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993 IPI:IPI00878002
Ensembl:ENST00000444502 Ensembl:ENST00000457179 Uniprot:F2Z2A5
Length = 129
Score = 291 (107.5 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 60/126 (47%), Positives = 80/126 (63%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 122
Query: 129 ENIAFE 134
ENI FE
Sbjct: 123 ENICFE 128
>TIGR_CMR|CJE_1854 [details] [associations]
symbol:CJE_1854 "DNA topoisomerase I" species:195099
"Campylobacter jejuni RM1221" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 ProtClustDB:PRK05582 RefSeq:YP_179824.1
ProteinModelPortal:Q5HSB1 STRING:Q5HSB1 GeneID:3232481
KEGG:cjr:CJE1854 PATRIC:20045540 OMA:RYTMASI
BioCyc:CJEJ195099:GJC0-1893-MONOMER Uniprot:Q5HSB1
Length = 700
Score = 295 (108.9 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 135/540 (25%), Positives = 227/540 (42%)
Query: 66 GHLMELDFDERYRKWHSCD-PADLYHAPVR--KHVPE-----DKKDIKKTLEEEARRCQW 117
G+ + D++ K H D P + + + +PE D + K L+ +A+ +
Sbjct: 18 GNFLGKDYEVIASKGHIRDLPKSSFGIKIEDDEFIPEYRITSDHSALVKELKSKAKDAKE 77
Query: 118 LVLWLDCDREGENIAFEVIE-VCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFA 176
+ L D DREGE IA+ + + + + N L R F + I A++N N
Sbjct: 78 VYLATDEDREGEAIAYHIAKAIGKDEN---TLPRIVFHEITKSAIENALKNPRKLNMHSV 134
Query: 177 DAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWE 236
+A R+ +D +G + +L + R L S G Q L +V+R E
Sbjct: 135 NAQQTRRLLDRIVGY---KLSPLLGQKIQ-------RGL--SAGRVQSAALKIIVDREKE 182
Query: 237 IQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYT-----SAVIIYEMCVQEPTATVTK 291
I+A E+++I+ + + + + + T A +I E C E +++
Sbjct: 183 IRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLTITNKDRAKLILEACKNE-VYSISD 241
Query: 292 VRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------GFISYPRT 343
+ +E+ PP P T L++ AS + + TM +A+ LY+ G I+Y RT
Sbjct: 242 IESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGVNTHEGVMGVITYMRT 301
Query: 344 ETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT 401
++ + + N +Q G D+ P A ++ G + AH I PT
Sbjct: 302 DSLNLAKEAVENARKFIQANFGK-DYLP-------SKANVYTTKTKGAQE--AHEAIRPT 351
Query: 402 KFS-SGE--SRW-SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVIL 457
S + E +++ +D KLY L+ FLAC PA+ V + VF SGR IL
Sbjct: 352 NLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQNVFVKNDRAVFKISGRKIL 411
Query: 458 AKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
Y VY + ++P + GQ L ++S T PP SEA L+ ++ GIG
Sbjct: 412 FDGYYKVYG-DMDKDKILPNFKIGQNLKVQNLEMNSHFTEPPSRYSEAGLVKKLESLGIG 470
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPT----NIGEALVMGYDDMGYELWKPNLRSMME 573
+T I L R Y D + P+ N+ E L + D+ + NL + ++
Sbjct: 471 RPSTYAPTISILTSRDYVTIDKK-QLIPSDVAFNVTEVLEKNFSDIVDSKFTSNLENTLD 529
Score = 64 (27.6 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 36/141 (25%), Positives = 61/141 (43%)
Query: 567 NLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERWSGGE 626
N+ ++E + ++ V +K ++ L N L ++ D + L E F + G+
Sbjct: 503 NVTEVLEKNFSDI-VDSKFTSN-LENTLDEIAE---DKADWQETLKEFYYPFMRKIEEGK 557
Query: 627 DQQAAGEVVRQCG-ICQE--SNMVLKKSRDGNLMVGCLAFPQC---RNAVWLPGSVSE-- 678
+ A+ + V + G C + + ++K R G V CL FP+C RN + SE
Sbjct: 558 TKIASQKTVTKLGESCPDCGGELAIRKGRFGEF-VACLNFPKCKYSRNLKSESKNESENT 616
Query: 679 -AAVTTN----TCNSCTPGPV 694
A N TC SC G +
Sbjct: 617 AAKAKANGTGITCPSCQKGEI 637
Score = 58 (25.5 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQC 666
C CQ+ +V + S+ G GC A+P+C
Sbjct: 629 CPSCQKGEIVERFSKRGKFY-GCSAYPKC 656
Score = 41 (19.5 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSR 41
L + E P+ AK++ L K+ + +G R
Sbjct: 5 LIIVESPAKAKTIGNFLGKDYEVIASKGHIR 35
>TIGR_CMR|CBU_2000 [details] [associations]
symbol:CBU_2000 "DNA topoisomerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003917 "DNA topoisomerase type I activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 ProtClustDB:PRK06599 OMA:RYTMASI
HSSP:P06612 RefSeq:NP_820975.1 ProteinModelPortal:Q83AA5
PRIDE:Q83AA5 GeneID:1209913 KEGG:cbu:CBU_2000 PATRIC:17932741
BioCyc:CBUR227377:GJ7S-1973-MONOMER Uniprot:Q83AA5
Length = 765
Score = 264 (98.0 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 126/561 (22%), Positives = 232/561 (41%)
Query: 84 DPADLYHAPVRKHVPEDKKDIKK--TLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRA 141
DP D + + H +++I+ + + + C L L D DREGE IA+ V ++ +
Sbjct: 45 DPEDHF----KMHYQAIERNIRHMDAIAKALKPCHNLYLATDPDREGEAIAWHVKQMLES 100
Query: 142 VNCHLVLRRARFSALIDREI-HQAVQNLVD-PNQWFADAVDARQE---IDLRIGASFTRF 196
N L+ +FS ++ +I +AVQ+ ++ P D V+A+Q +D +G + +
Sbjct: 101 RNG---LKDKKFSRVVFHQITKKAVQHAIENPRDISMDLVNAQQARRALDYLVGFNLSPL 157
Query: 197 QTMLLK-NFHIDSVTDDR-NLVLSYGPCQFPTLGFVVERYWEIQA--HESEEFWTINCSH 252
++ V L++ + F + YW I A H ++ +
Sbjct: 158 LWKKIRPGLSAGRVQSPALRLIVER---EIEIENFESQEYWTIHADCHAQQQPFDARLIE 214
Query: 253 KSEEGTATFSWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEK 312
E FS + T I TV KV ++E+ + P P T +++
Sbjct: 215 FQGEKLEQFSIVNEKQAHETRDAITQ---AANGKLTVAKVVKRERKRNPAPPFITSTMQQ 271
Query: 313 RASRYFRMSSEHTMKVAEDLYQA---------GFISYPRTETDSFSSGT--NLHGIVQEQ 361
A+R S+ TM++A+ LY+ G I+Y RT++ + +S + +++E+
Sbjct: 272 EAARKLGFSASKTMQIAQQLYEGVNLGEEGAMGLITYMRTDSVTLASEALQEIRQLIEEK 331
Query: 362 IGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTK-FSSGES--RW-SQDHYKL 417
Y Q + +++ + AH I PT F + E+ ++ + D KL
Sbjct: 332 --------YGQENVPEQTRIYKTKSKNAQE--AHEAIRPTSAFRTPENLKKYLNSDQLKL 381
Query: 418 YELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLDVYR--F------ES 469
Y L+ + +AC A V++ +F +G I+ ++ VY+ F E
Sbjct: 382 YTLIWKRTIACQMIEATLHTVAVDLKAPNAIFRANGSTIVKPGFISVYQETFDDKKKEEE 441
Query: 470 WGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKL 529
++P GQ + + T PPP +EA L+ +++ IG +T I L
Sbjct: 442 SDSKMLPPLEEGQTVDVNEIKSEQHFTEPPPRYTEASLVKALEEYDIGRPSTYASIIATL 501
Query: 530 LDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADV 589
+R Y D N RF T++G + + + +E ++ +++ G K+ V
Sbjct: 502 KNRKYVDVD-NKRFIATDVGRIVNRFLTHYFTKYVDYGFTAKLEDELDDIARGEKTWIPV 560
Query: 590 LANCLQQMKACFLDARLKKVK 610
L K +D K VK
Sbjct: 561 LETFWSPFKN-LVDVTEKTVK 580
Score = 88 (36.0 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 636 RQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTN-TCNSCTPGPV 694
RQC CQ SN+++K R G +GC +P C+ L E TN TC C G +
Sbjct: 639 RQCPECQ-SNLIIKMGRYGKF-IGCSGYPNCKYMEPL-----EKPKDTNVTCPKCKKGTI 691
Query: 695 YLIQFKFRQHEI 706
+Q K R+ +I
Sbjct: 692 --LQRKSRRGKI 701
Score = 74 (31.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 638 CGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVW 671
C C++ ++ +KSR G + C +P C A+W
Sbjct: 683 CPKCKKGTILQRKSRRGKIFYSCARYPDCDYALW 716
Score = 55 (24.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 633 EVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQC---RNAVWLPGSVSEAAVTTNTCNSC 689
++ +C C + + ++ R G +GC A+P C RN + ++A + C C
Sbjct: 588 KIDEKCPKCS-AQLSIRLGRRGRF-IGCTAYPDCDYTRNLTEIAAE-AQAVLEGRQCPEC 644
>UNIPROTKB|P06612 [details] [associations]
symbol:topA species:83333 "Escherichia coli K-12"
[GO:0006265 "DNA topological change" evidence=IEA;IGI] [GO:0005694
"chromosome" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0022616 "DNA strand
elongation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IMP] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;IMP] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 EMBL:M15041 GO:GO:0006265
GO:GO:0003918 PROSITE:PS50880 SMART:SM00493 GO:GO:0022616
GO:GO:0003917 EMBL:X04475 PIR:E64875 RefSeq:NP_415790.1
RefSeq:YP_489542.1 PDB:1CY0 PDB:1CY1 PDB:1CY2 PDB:1CY4 PDB:1CY6
PDB:1CY7 PDB:1CY8 PDB:1CY9 PDB:1CYY PDB:1ECL PDB:1MW8 PDB:1MW9
PDB:1YUA PDB:3PWT PDB:3PX7 PDBsum:1CY0 PDBsum:1CY1 PDBsum:1CY2
PDBsum:1CY4 PDBsum:1CY6 PDBsum:1CY7 PDBsum:1CY8 PDBsum:1CY9
PDBsum:1CYY PDBsum:1ECL PDBsum:1MW8 PDBsum:1MW9 PDBsum:1YUA
PDBsum:3PWT PDBsum:3PX7 ProteinModelPortal:P06612 SMR:P06612
DIP:DIP-11011N IntAct:P06612 MINT:MINT-1218330 PaxDb:P06612
PRIDE:P06612 EnsemblBacteria:EBESCT00000004769
EnsemblBacteria:EBESCT00000004770 EnsemblBacteria:EBESCT00000004771
EnsemblBacteria:EBESCT00000004772 EnsemblBacteria:EBESCT00000004773
EnsemblBacteria:EBESCT00000016049 GeneID:12930585 GeneID:945862
KEGG:ecj:Y75_p1248 KEGG:eco:b1274 PATRIC:32117806 EchoBASE:EB1006
EcoGene:EG11013 eggNOG:COG0551 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 BioCyc:EcoCyc:EG11013-MONOMER
BioCyc:ECOL316407:JW1266-MONOMER BioCyc:MetaCyc:EG11013-MONOMER
EvolutionaryTrace:P06612 Genevestigator:P06612 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 Uniprot:P06612
Length = 865
Score = 300 (110.7 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 130/495 (26%), Positives = 211/495 (42%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K+ + L++ A + + L D DREGE IA+ + EV + R F+ +
Sbjct: 89 KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARY--SRVVFNEITKNA 146
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
I QA + N +A AR+ +D +G + +L K R L S G
Sbjct: 147 IRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS---PLLWKKIA-------RGL--SAG 194
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVIIYEM 280
Q + VVER EI+A EEFW ++ S + G A + H D + E
Sbjct: 195 RVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEA-LALQVTHQNDKPFRPVNKEQ 253
Query: 281 CVQEPTATVTKVR-----QQEK--LKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
Q + + K R +++K P P T L++ AS + TM +A+ LY
Sbjct: 254 -TQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLY 312
Query: 334 QAGFISYPRTETDSFSS-GTNL-HGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD 391
+AG+I+Y RT++ + S N+ G + + G ++ L + + S +
Sbjct: 313 EAGYITYMRTDSTNLSQDAVNMVRGYISDNFG--------KKYLPESPNQY---ASKENS 361
Query: 392 DKAHPPIHPTKFS-SGESR--WSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEV 448
+AH I P+ + ES D KLY+L+ R F+AC PA T + + AG+
Sbjct: 362 QEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVG-AGDF 420
Query: 449 -FSTSGRVILAKNYLDVYRFESWGG--LVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
GR++ + V G ++P G LT T+PP SEA
Sbjct: 421 RLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEA 480
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWK 565
L+ ++K GIG +T I + DR Y ++ N RF +GE + ++ EL
Sbjct: 481 SLVKELEKRGIGRPSTYASIISTIQDRGY-VRVENRRFYAEKMGEIVTDRLEENFRELMN 539
Query: 566 PNLRSMMESDMKEVS 580
+ + ME+ + +V+
Sbjct: 540 YDFTAQMENSLDQVA 554
>UNIPROTKB|Q9KRB2 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003917 "DNA
topoisomerase type I activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013263 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 Pfam:PF08272 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265 GO:GO:0003918
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 290 (107.1 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 130/517 (25%), Positives = 212/517 (41%)
Query: 87 DLYHA-PVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCH 145
D YH + K+ + L++ A+ + L D DREGE IA+ + E+
Sbjct: 82 DPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKR 141
Query: 146 LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFH 205
+R F+ + I QA + + N +A AR+ +D +G + +L K
Sbjct: 142 Y--KRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVS---PLLWKKVA 196
Query: 206 IDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFS 262
R L S G Q + +VER EI+A EEFW IN + ++ +
Sbjct: 197 -------RGL--SAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVA 247
Query: 263 WMRGHLF---DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFR 319
G F + T A+ + + V K + P P T L++ AS
Sbjct: 248 QKDGLAFKPVNETEALAAVA-ALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLG 306
Query: 320 MSSEHTMKVAEDLYQAGFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDH 377
+ TM +A+ LY+AG+I+Y RT++ + S+ NL G + + H Y + L
Sbjct: 307 YGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITK---H-----YGEAYLPS 358
Query: 378 AAGLWRNPGSGGHDDKAHPPIHP---TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAV 434
++ GS + +AH I P T + D +KLY L+ F+AC PA
Sbjct: 359 QPNVY---GSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQ 415
Query: 435 GAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPTYVHGQQFIPTTLTLDS 493
T V + A GR++ + V R ++P G +L
Sbjct: 416 YDSTTVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDPKQ 475
Query: 494 GVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553
T+PP +EA L+ ++K GIG +T I + DR Y +K RF +GE +
Sbjct: 476 HFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGY-VKVDQRRFFAEKMGEIVT 534
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
D+ +L + + ME + +++ G + VL
Sbjct: 535 DRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVL 571
Score = 50 (22.7 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLL----EAMGIFFERWSGG 625
+++E D++ ++ K + + C M A +D + +K+ + G E G
Sbjct: 651 NVLEEDVETAALRAKKRCPI---CETAMDAYLIDDK-RKLHVCGNNPNCEGFIVEE---G 703
Query: 626 EDQQAA--GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
E + G V +C C S+MVLK R G M GC C+N
Sbjct: 704 EFKVKGYEGPTV-ECDKCG-SDMVLKNGRFGKYM-GCTN-DACKN 744
>TIGR_CMR|VC_1730 [details] [associations]
symbol:VC_1730 "DNA topoisomerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013263
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
Pfam:PF08272 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006265 GO:GO:0003918 PROSITE:PS50880 SMART:SM00493
GO:GO:0003917 eggNOG:COG0551 KO:K03168 OMA:EFWDIHA
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 PIR:B82163 RefSeq:NP_231366.1
ProteinModelPortal:Q9KRB2 SMR:Q9KRB2 DNASU:2613735 GeneID:2613735
KEGG:vch:VC1730 PATRIC:20082518 Uniprot:Q9KRB2
Length = 876
Score = 290 (107.1 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 130/517 (25%), Positives = 212/517 (41%)
Query: 87 DLYHA-PVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCH 145
D YH + K+ + L++ A+ + L D DREGE IA+ + E+
Sbjct: 82 DPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKR 141
Query: 146 LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFH 205
+R F+ + I QA + + N +A AR+ +D +G + +L K
Sbjct: 142 Y--KRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVS---PLLWKKVA 196
Query: 206 IDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINC---SHKSEEGTATFS 262
R L S G Q + +VER EI+A EEFW IN + ++ +
Sbjct: 197 -------RGL--SAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVA 247
Query: 263 WMRGHLF---DYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFR 319
G F + T A+ + + V K + P P T L++ AS
Sbjct: 248 QKDGLAFKPVNETEALAAVA-ALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLG 306
Query: 320 MSSEHTMKVAEDLYQAGFISYPRTETDSFSSGT--NLHGIVQEQIGHPDWGPYAQRLLDH 377
+ TM +A+ LY+AG+I+Y RT++ + S+ NL G + + H Y + L
Sbjct: 307 YGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITK---H-----YGEAYLPS 358
Query: 378 AAGLWRNPGSGGHDDKAHPPIHP---TKFSSGESRWSQDHYKLYELVVRHFLACVSQPAV 434
++ GS + +AH I P T + D +KLY L+ F+AC PA
Sbjct: 359 QPNVY---GSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQ 415
Query: 435 GAETIVEINIAGEVFSTSGRVILAKNYLDVYR-FESWGGLVIPTYVHGQQFIPTTLTLDS 493
T V + A GR++ + V R ++P G +L
Sbjct: 416 YDSTTVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDPKQ 475
Query: 494 GVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALV 553
T+PP +EA L+ ++K GIG +T I + DR Y +K RF +GE +
Sbjct: 476 HFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGY-VKVDQRRFFAEKMGEIVT 534
Query: 554 MGYDDMGYELWKPNLRSMMESDMKEVSVGNKSKADVL 590
D+ +L + + ME + +++ G + VL
Sbjct: 535 DRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVL 571
Score = 50 (22.7 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 570 SMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLL----EAMGIFFERWSGG 625
+++E D++ ++ K + + C M A +D + +K+ + G E G
Sbjct: 651 NVLEEDVETAALRAKKRCPI---CETAMDAYLIDDK-RKLHVCGNNPNCEGFIVEE---G 703
Query: 626 EDQQAA--GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRN 668
E + G V +C C S+MVLK R G M GC C+N
Sbjct: 704 EFKVKGYEGPTV-ECDKCG-SDMVLKNGRFGKYM-GCTN-DACKN 744
>UNIPROTKB|C9JT00 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
HOGENOM:HOG000169036 IPI:IPI00877734 ProteinModelPortal:C9JT00
STRING:C9JT00 Ensembl:ENST00000437929 ArrayExpress:C9JT00
Bgee:C9JT00 Uniprot:C9JT00
Length = 122
Score = 265 (98.3 bits), Expect = 8.2e-22, P = 8.2e-22
Identities = 55/120 (45%), Positives = 75/120 (62%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREG 128
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+EG
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEG 122
>TIGR_CMR|BA_0375 [details] [associations]
symbol:BA_0375 "DNA topoisomerase III" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 RefSeq:NP_842919.1
RefSeq:YP_016995.1 RefSeq:YP_026641.1 HSSP:P14294
ProteinModelPortal:Q81Z97 IntAct:Q81Z97 DNASU:1084121
EnsemblBacteria:EBBACT00000010088 EnsemblBacteria:EBBACT00000017365
EnsemblBacteria:EBBACT00000020979 GeneID:1084121 GeneID:2819802
GeneID:2849354 KEGG:ban:BA_0375 KEGG:bar:GBAA_0375 KEGG:bat:BAS0361
HOGENOM:HOG000086847 KO:K03169 OMA:LSNRRCP ProtClustDB:PRK07726
BioCyc:BANT260799:GJAJ-403-MONOMER
BioCyc:BANT261594:GJ7F-413-MONOMER TIGRFAMs:TIGR01056
Uniprot:Q81Z97
Length = 729
Score = 275 (101.9 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 122/477 (25%), Positives = 214/477 (44%)
Query: 60 LMTSVTGHLMEL----DFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARR- 114
++T GHL+ L +D +Y+KW+ D L + + K + R+
Sbjct: 37 IVTWALGHLVTLADPESYDVKYKKWNLEDLPMLPERLKLTVIKQTGKQFNAVKSQLLRKD 96
Query: 115 CQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDPNQW 174
+++ D REGE +A +I+ R +N ++R S++ D+ I NL +
Sbjct: 97 VNEIIVATDAGREGELVARWIIDKVR-IN--KPIKRLWISSVTDKAIKDGFANLKPGKAY 153
Query: 175 ---FADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVV 231
+A AV AR E D IG + TR ++T N L+ G Q PT+ +
Sbjct: 154 DNLYASAV-ARSEADWYIGLNATR------------ALTTRFNAQLNCGRVQTPTVAMIA 200
Query: 232 ERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDYTSAVII-YEMCVQEPTATVT 290
R EI+ +++ ++ I + + + T+ G+ + I + + ATV
Sbjct: 201 NREDEIKNFKAQTYYGIE-AQTTNQLKLTWQDANGNSRSFNKEKIDGIVKGLDKHNATVL 259
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY-QAGFISYPRTETDSFS 349
++ +++K + P EL++ A++ F S++ T+ + + LY Q ++YPRT++ S
Sbjct: 260 EIDKKQKKSFSPGLYDLTELQRDANKKFGYSAKETLNIMQKLYEQHKVLTYPRTDSRYIS 319
Query: 350 SGTNLHGIVQEQI---GHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKA--HPPIHPTKFS 404
S ++ G + E++ G ++ P A ++L + N S D K H I PT+
Sbjct: 320 S--DIVGTLPERLKACGVGEYRPLAHKVLQKP--IKANK-SFVDDSKVSDHHAIIPTEGY 374
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETI-VEINIAGEVFSTSGRVILAKNYLD 463
S ++ K+Y+LVV+ FLA V PA E + + + E F G+ IL + +
Sbjct: 375 VNFSAFTDKERKIYDLVVKRFLA-VLFPAFEYEQLTLRTKVGNETFIARGKTILHAGWKE 433
Query: 464 VY--RFESWGGL------VIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMD 512
VY RFE ++P G + SG T+ P +EA LLS M+
Sbjct: 434 VYENRFEDDDVTDDVKEQLLPRIEKGDTLTVKLIMQTSGQTKAPARFNEATLLSAME 490
Score = 60 (26.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 29/94 (30%), Positives = 42/94 (44%)
Query: 505 ADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELW 564
AD L G+GT AT D I KL + F I+ T+ G L+ D + EL
Sbjct: 504 ADTLK--STGGLGTVATRADIIDKLFNSFL-IEKRGKDIHITSKGRQLL---DLVPEELK 557
Query: 565 KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMK 598
P L E ++ ++ G K K +V + +MK
Sbjct: 558 SPTLTGEWEQKLEAIAKG-KLKKEVF---ISEMK 587
Score = 39 (18.8 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 568 LRSMMESDMKEVSVGNKSKADVL 590
L S ME+ K + NK AD L
Sbjct: 485 LLSAMENPTKYMDTQNKQLADTL 507
>TIGR_CMR|ECH_0750 [details] [associations]
symbol:ECH_0750 "DNA topoisomerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0006268 "DNA
unwinding involved in replication" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 eggNOG:COG1754 HOGENOM:HOG000004020
ProtClustDB:PRK06599 RefSeq:YP_507548.1 ProteinModelPortal:Q2GG85
STRING:Q2GG85 GeneID:3927721 KEGG:ech:ECH_0750 PATRIC:20576936
OMA:KLTHVND BioCyc:ECHA205920:GJNR-753-MONOMER Uniprot:Q2GG85
Length = 820
Score = 285 (105.4 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 145/635 (22%), Positives = 269/635 (42%)
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ DF K S DP D A + + + +K + K ++ + Q + L D D
Sbjct: 30 GHIR--DFPA---KSGSVDP-DKDFAMTYEIISKSEKYVNKLIQVANKETQGIYLATDPD 83
Query: 126 REGENIAFEVIEVCR---AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE IA+ +IEV + A++ ++V+ R F+ + I ++++ N A AR
Sbjct: 84 REGEAIAWHIIEVLKENNAIDDNVVINRMVFNEVTKSAILESIKRPRSINMDLVYAQQAR 143
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+ +D +G FT +L + S G Q L + +R +I+ +
Sbjct: 144 RALDYLVG--FT-LSPLLWRKLPGSK---------SAGRVQSVALRLICDRESDIEKFIT 191
Query: 243 EEFWTIN---CSHKSEEGTATFSWMRG---HLFDYTSAVIIYEMCVQEPTATVTKVRQQE 296
+E+W I C+ + ++ +A S G FD + ++ + + + + + ++
Sbjct: 192 QEYWDIEAKCCNTEGKQFSAFLSCYAGKKLEKFDIKNEEDAQKLSEEVRSRSYSVINVEK 251
Query: 297 K-LKYPPYP-LSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------GFISYPRTETD 346
K K PYP T L++ AS ++++TM +A+ LY+ G I+Y RT+
Sbjct: 252 KHTKRNPYPPFITSSLQQEASTKLGFTAKNTMLIAQKLYEGIDVGGEIVGLITYMRTD-- 309
Query: 347 SFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFS-- 404
G + E I + + L +A + + AH I PT +
Sbjct: 310 ----GFYIADEALEHIRSIIVSMFGKEYLPESARKYVKKVKNAQE--AHEAIRPTNITIT 363
Query: 405 SGE-SRW-SQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS--TSGRVILAKN 460
G S + + + KLY+L+ + +A AV + IVE+ +V + +G +
Sbjct: 364 PGSLSNYLTPEQLKLYDLIWKRTVASQMNSAVIDQVIVELGSLDKVVTLRATGSSLFFDG 423
Query: 461 YLDVYRF---ESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
+ VY + ++P + + T PP +EA L+ M++ GIG
Sbjct: 424 FYKVYGHGEDDDSKNNMLPLLQKNDKCPLDEVVPHQHFTNPPARYNEASLVKKMEEIGIG 483
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMK 577
+T I L DR Y I + RF PT G + + + + + + +E +
Sbjct: 484 RPSTYASIISVLQDRQYVILNQK-RFFPTERGRIVNVFLVNFFSRYVEYDFTADLEEKLD 542
Query: 578 EVSVGNKSKADVLANCLQQMKACFLDA--RLKKVKLLEAMGIF---FERWSGGEDQQAAG 632
+S G + +VL Q F+D +KK++ E + + E + D+ +
Sbjct: 543 LISNGKINWKEVL----HQFWFLFIDNVNSVKKLEFTEVLKVISCEMENYIFSSDKSESS 598
Query: 633 EVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCR 667
V C +C + + L S++G + +GC +P+C+
Sbjct: 599 RV---CPVCNDGTLELNISKNG-IFLGCSKYPECK 629
>UNIPROTKB|C9JKE2 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
Pfam:PF01751 InterPro:IPR006171 GO:GO:0007059 GO:GO:0000793
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012 HGNC:HGNC:11993
IPI:IPI00879445 ProteinModelPortal:C9JKE2 STRING:C9JKE2
Ensembl:ENST00000430142 HOGENOM:HOG000169036 ArrayExpress:C9JKE2
Bgee:C9JKE2 Uniprot:C9JKE2
Length = 121
Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 54/119 (45%), Positives = 74/119 (62%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+M
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVM 62
Query: 70 ELDFDERYRKWHSCDPADLY-HAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDRE 127
LDF +Y KW DPA+L+ AP K K ++ K L+ E R C ++VLWLDCD+E
Sbjct: 63 TLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKE 121
>TIGR_CMR|APH_0597 [details] [associations]
symbol:APH_0597 "DNA topoisomerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005733 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 TIGRFAMs:TIGR01051 eggNOG:COG1754
HOGENOM:HOG000004020 ProtClustDB:PRK06599 OMA:KLTHVND
RefSeq:YP_505187.1 ProteinModelPortal:Q2GKB4 STRING:Q2GKB4
GeneID:3930246 KEGG:aph:APH_0597 PATRIC:20949858
BioCyc:APHA212042:GHPM-621-MONOMER Uniprot:Q2GKB4
Length = 811
Score = 295 (108.9 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 149/645 (23%), Positives = 275/645 (42%)
Query: 66 GHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCD 125
GH+ DF K S DP++ + + + +P+ +K + K ++ + + + L D D
Sbjct: 30 GHIR--DFPA---KSGSVDPSNDFKM-IYEIIPKSEKHLDKIVKTVSAEKEAIYLATDPD 83
Query: 126 REGENIAFEVIEVCR---AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDAR 182
REGE IA+ ++EV + A+ + + R F+ + R + AV N N A R
Sbjct: 84 REGEAIAWHIVEVLKEKCAIAKDVTVNRMVFNEVTKRAVTAAVDNCRPINMDLVRAQQTR 143
Query: 183 QEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHES 242
+ +D +G FT +L + + R S G Q L + ER +E++ ++
Sbjct: 144 RVLDYLVG--FT-LSPLLWRK-----LPGSR----SAGRVQSVALRLLCEREYEVEQFKT 191
Query: 243 EEFWTINCSHKSEEGT---ATFSWMRGHLFDYTSA-----VIIYEMCVQEPTATVTKVRQ 294
+E+W + +++ G A G + S Y V+ + TV V +
Sbjct: 192 QEYWDVGVDLQNQGGEKFEAVLKCYAGEKLEKFSIGTEEQAKEYAETVKNQSYTVESV-E 250
Query: 295 QEKLKYPPYP-LSTIELEKRASRYFRMSSEHTMKVAEDLYQA--------GFISYPRTET 345
+K K PYP T L++ AS S+++TM +A+ LY+ G I+Y RT
Sbjct: 251 SKKTKRNPYPPFITSSLQQEASTKLGFSAKNTMMIAQKLYEGIDIGGEIVGLITYMRT-- 308
Query: 346 DSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSS 405
D F + +++ I Y + + + +N +AH I PT +
Sbjct: 309 DGFYISEDAVNYIRDTIKMQFGEKYLSKSVRNYTKKVKNA------QEAHEAIRPTDITM 362
Query: 406 GESRWSQ----DHYKLYELVVRHFLACVSQPAVGAETIVEINIA-GEV-FSTSGRVILAK 459
+ S+ + KLY L+ + LA + AV + V+I + G++ +G +
Sbjct: 363 LPEQLSKYLTDEQLKLYTLIWKRTLATQMESAVIDQVAVDIKSSCGKISLHATGSTLSFD 422
Query: 460 NYLDVYRFE-SWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGT 518
Y VY E S ++P G+ + + T+PP SEA L+ M++ GIG
Sbjct: 423 GYYRVYGSEDSDKRRMLPQLREGESCELLEVHPNQHFTQPPARYSEASLVKKMEEIGIGR 482
Query: 519 DATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKE 578
+T I L +R Y + RF P+ G + + + + + + +E ++
Sbjct: 483 PSTYATIISVLQERGYTQLEQK-RFIPSERGRIVNAFLTNFFRKYVEYDFTANLEEELDL 541
Query: 579 VSVGNKSKADVLANCLQQMKACFLDAR-LKKVKLLEAMGIFFERWS-GGEDQQAAGEVVR 636
+S G +VL+ + + + ++ ++L+A+ E ++ D ++ V
Sbjct: 542 ISNGKMVWKEVLSQFWDKFISDVSSVKTIEASEILKAITRDLENYAFSSVDGESISRVCP 601
Query: 637 QCGICQESNMVLKKSRDGNLMVGCLAFPQCR--NAVWLPGSVSEA 679
QCG ++L + + +GC +P+CR + GS S A
Sbjct: 602 QCG---SGELMLNIGKT-SAFLGCNRYPECRYTRGIGGDGSASPA 642
Score = 37 (18.1 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 13 VAEKPSVAKSVAGILSK 29
+ E PS AK+++ L K
Sbjct: 5 IVESPSKAKTISKYLGK 21
>UNIPROTKB|P14294 [details] [associations]
symbol:topB species:83333 "Escherichia coli K-12"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IMP] [GO:0051304
"chromosome separation" evidence=IMP] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005738 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006310 GO:GO:0006265 GO:GO:0051304
PROSITE:PS50880 SMART:SM00493 EMBL:J05076 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 OMA:GNKERDE
KO:K03169 ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 PIR:JV0049
RefSeq:NP_416277.1 RefSeq:YP_490024.1 PDB:1D6M PDB:1I7D PDB:2O19
PDB:2O54 PDB:2O59 PDB:2O5C PDB:2O5E PDBsum:1D6M PDBsum:1I7D
PDBsum:2O19 PDBsum:2O54 PDBsum:2O59 PDBsum:2O5C PDBsum:2O5E
ProteinModelPortal:P14294 SMR:P14294 DIP:DIP-11012N IntAct:P14294
MINT:MINT-1224249 PRIDE:P14294 EnsemblBacteria:EBESCT00000000765
EnsemblBacteria:EBESCT00000016482 GeneID:12930143 GeneID:946141
KEGG:ecj:Y75_p1738 KEGG:eco:b1763 PATRIC:32118837 EchoBASE:EB1007
EcoGene:EG11014 HOGENOM:HOG000086848 BioCyc:EcoCyc:EG11014-MONOMER
BioCyc:ECOL316407:JW1752-MONOMER BioCyc:MetaCyc:EG11014-MONOMER
EvolutionaryTrace:P14294 Genevestigator:P14294 Uniprot:P14294
Length = 653
Score = 261 (96.9 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 140/551 (25%), Positives = 232/551 (42%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPS+A+++A +L K R+G F GQ ++T GHL+E
Sbjct: 3 LFIAEKPSLARAIADVLPKPH----RKGDG-------FIECGNGQ----VVTWCIGHLLE 47
Query: 71 L---D-FDERYRKWHSCD-PA--DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
D +D RY +W+ D P + + R V + IK+ L E + +V D
Sbjct: 48 QAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASE----IVHAGD 103
Query: 124 CDREGENIAFEVIEVCR-AVNCHLVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA- 181
DREG+ + EV++ + A ++R + L + + +A+ L +++ V A
Sbjct: 104 PDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSAL 163
Query: 182 -RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
R D G + TR T+L +N V LS G Q P LG VV R EI+
Sbjct: 164 ARARADWLYGINMTRAYTILGRNAGYQGV-------LSVGRVQTPVLGLVVRRDEEIENF 216
Query: 241 ESEEFWTINCSHKSEEGTATFS--WM-----------RGHLFDYTSAVIIYEMCVQEPTA 287
+++F+ + +H F+ W G L A + +P A
Sbjct: 217 VAKDFFEVK-AHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQP-A 274
Query: 288 TVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG-FISYPRTETD 346
VT + + + P P S L+ A++ F +S+++ + + + LY+ I+YPR++
Sbjct: 275 IVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR 334
Query: 347 SFSSG--TNLHGIVQEQIGH-PDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPTKF 403
H ++ H PD P Q ++D RN AH I PT
Sbjct: 335 YLPEEHFAGRHAVMNAISVHAPDLLP--QPVVDPDI---RNRCWDDKKVDAHHAIIPTAR 389
Query: 404 SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILAKNYLD 463
SS + +++ K+Y L+ R +L AV + ++E++IA F R + +
Sbjct: 390 SSAINL-TENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRT 448
Query: 464 VY----RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTD 519
+ R E G +P G + + + T+PP ++A LLS M GI
Sbjct: 449 LLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAM--TGIARF 506
Query: 520 ATMHDHIKKLL 530
D +KK+L
Sbjct: 507 VQDKD-LKKIL 516
Score = 63 (27.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKA-GIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
T TL S +T + + DL + G+GT+AT I+ L R + K +
Sbjct: 492 TDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHS- 550
Query: 546 TNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVS 580
T+ G+AL +M +P++ + ES + ++S
Sbjct: 551 TDAGKALFHSLPEMAT---RPDMTAHWESVLTQIS 582
>TIGR_CMR|SO_2705 [details] [associations]
symbol:SO_2705 "DNA topoisomerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 HOGENOM:HOG000004018 KO:K03168
OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 HSSP:P06612 RefSeq:NP_718289.1
ProteinModelPortal:Q8EDN8 SMR:Q8EDN8 GeneID:1170406
KEGG:son:SO_2705 PATRIC:23525033 Uniprot:Q8EDN8
Length = 878
Score = 270 (100.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 126/501 (25%), Positives = 208/501 (41%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K+ + K L+ A + L D DREGE IA+ + EV +R F+ +
Sbjct: 97 KEKVVKELQALADSADQIYLATDLDREGEAIAWHLQEVIGGDPSRY--QRVVFNEITKSA 154
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
I +A + +A AR+ +D +G + +L K R L S G
Sbjct: 155 IQEAFSKPASLDTNMVNAQQARRFLDRVVGFMVS---PLLWKKVA-------RGL--SAG 202
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHL---FDYTSAVII 277
Q + VVER EI+A EEFW ++ + A + +L F+ T+
Sbjct: 203 RVQSVAVRLVVERESEIKAFVPEEFWDVHAQLNTPSSEALRMEVVKYLDSAFEPTNEQQA 262
Query: 278 YEMCVQEPTATVTKVRQQEKLKY--PPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
+A+ + +++K P P T L++ AS + TM +A+ LY+A
Sbjct: 263 LAAVQALSSASFKVIAREDKATQSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA 322
Query: 336 GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
G I+Y RT++ + S L V+E IG Y + L A + G + AH
Sbjct: 323 GHITYMRTDSTNLSQEA-LDS-VREMIGKE----YGAKYLP-AEPIRYGSKEGAQE--AH 373
Query: 396 PPIHPTKF---SSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTS 452
I P+ ++ + +D +LYEL+ R F++C PA+ T + + A +
Sbjct: 374 EAIRPSNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPALYDATKLTVKAADYELKAT 433
Query: 453 GRVILAKNYLDVY---RFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLS 509
GR++ + V + ++ +P G L T+PP SEA L+
Sbjct: 434 GRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDVLSLVELEPKQHFTKPPARYSEASLVK 493
Query: 510 CMDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLR 569
++K GIG +T I + +R Y +K N RF +GE + + EL +
Sbjct: 494 ELEKRGIGRPSTYATIISTIQERGY-VKVENRRFYAEKMGEIVSERLVNSFAELMSYDFT 552
Query: 570 SMMESDMKEVSVGNKSKADVL 590
+ ME + +V+ G VL
Sbjct: 553 ASMEQTLDDVAKGELDWKKVL 573
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 91 APVRKHVPEDKKDIKKTLEEEA 112
A V+K PE+K KK + +A
Sbjct: 53 AEVKKMSPEEKARYKKVKDHQA 74
>TIGR_CMR|CPS_1197 [details] [associations]
symbol:CPS_1197 "DNA topoisomerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013263 InterPro:IPR013497
InterPro:IPR013498 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396 Pfam:PF08272
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006265 GO:GO:0003918
SMART:SM00493 GO:GO:0003917 eggNOG:COG0551 HOGENOM:HOG000004018
KO:K03168 OMA:EFWDIHA ProtClustDB:PRK07561 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_267940.1
ProteinModelPortal:Q486S5 SMR:Q486S5 STRING:Q486S5 GeneID:3521498
KEGG:cps:CPS_1197 PATRIC:21465639
BioCyc:CPSY167879:GI48-1278-MONOMER Uniprot:Q486S5
Length = 899
Score = 260 (96.6 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 129/500 (25%), Positives = 203/500 (40%)
Query: 101 KKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDRE 160
K+ + L++ A + + L D DREGE IA+ + E+ + RR F+ + +
Sbjct: 96 KEKVVAELKKLADKADIVYLATDLDREGEAIAWHLKEIIGGEDEKF--RRVVFNEITESS 153
Query: 161 IHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYG 220
I QA + + +A AR+ +D +G + +L K R L S G
Sbjct: 154 IQQAFATPGELSMPGVNAQQARRFLDRVVGFMVS---PLLWKKVA-------RGL--SAG 201
Query: 221 PCQFPTLGFVVERYWEIQAHESEEFWTINC-SHKS--EEGTATFSWMRGHLFDYTSAVII 277
Q + VVE+ EI+A + +EFW I +H S E T + G F T+
Sbjct: 202 RVQSVAVKLVVEKEREIKAFDPKEFWEIAVDTHASTGEVLTLDVTHENGKAFKPTTEKET 261
Query: 278 YE-MCVQEPTATVTKVRQQEKLKYPPY-PLSTIELEKRASRYFRMSSEHTMKVAEDLYQA 335
+ + +P R+ K P P T L++ AS + TM +A+ LY+A
Sbjct: 262 NAALAILKPADYAVSKREDRPSKSTPSAPFITSTLQQAASTKLGYGVKRTMGLAQRLYEA 321
Query: 336 GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAH 395
G I+Y RT++ TNL E + L A + GS +AH
Sbjct: 322 GHITYMRTDS------TNLSKDAVEMCRKYISDSFGDNYLPENAKTY---GSKAGAQEAH 372
Query: 396 PPIHPTKFSSGESRWSQ----DHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFST 451
I P+ E+ + + D KLYEL+ R F+AC A + + I+ A
Sbjct: 373 EAIRPSNVKL-EAAFLEGIEADAKKLYELIWRQFVACQMTAARYTVSTLTISAASFDLKA 431
Query: 452 SGRVILAKNYLDVYRFESWGGLV-IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSC 510
GRV+ + V+ S G +P G+ + T+PP EA L+
Sbjct: 432 KGRVMQFDGWTIVHPQLSKGDDTHLPDLQVGEALTLDKIEPSQHFTKPPARFGEASLVKE 491
Query: 511 MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRS 570
++K IG +T I + DR Y D RF +GE + +L S
Sbjct: 492 LEKRSIGRPSTYASIISTIQDRGYVRLDKK-RFYAEKMGEIVTNSLSGSFEKLMSYEFTS 550
Query: 571 MMESDMKEVSVGNKSKADVL 590
ME ++ E++ G+ VL
Sbjct: 551 NMEQELDEIAGGSADWKGVL 570
>UNIPROTKB|Q9KQF5 [details] [associations]
symbol:topB "DNA topoisomerase 3" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] InterPro:IPR000380 InterPro:IPR003601
InterPro:IPR003602 InterPro:IPR005738 InterPro:IPR013497
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436
SMART:SM00437 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003916 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 KO:K03169
ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 PIR:E82126
RefSeq:NP_231677.1 ProteinModelPortal:Q9KQF5 SMR:Q9KQF5
DNASU:2613424 GeneID:2613424 KEGG:vch:VC2043 PATRIC:20083118
OMA:AANGDCV Uniprot:Q9KQF5
Length = 647
Score = 248 (92.4 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 128/483 (26%), Positives = 207/483 (42%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPS+A+++A L K + +G R G ++T GHL+E
Sbjct: 4 LFIAEKPSLARAIADALPKPH--KKEQGCIR---------CANGD----IVTWCIGHLLE 48
Query: 71 L---D-FDERYRKWHSCD-PA--DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
D +DERY+KW+ D P + + RK + ++K L+E + ++ D
Sbjct: 49 QVEPDAYDERYKKWNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQ----IIHAGD 104
Query: 124 CDREGENIAFEVIEVCRAVNCHL-VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA- 181
DREG+ + EVI+ C+ ++R S L + +A+Q L ++ +V A
Sbjct: 105 PDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSAL 164
Query: 182 -RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
R D G + +R T+L K V LS G Q P LG VV R EI+
Sbjct: 165 ARSRADWLYGMNMSRAYTLLGKKAGYQGV-------LSVGRVQTPVLGLVVRRDEEIEHF 217
Query: 241 ESEEFWTINCSHKSEEGTATFS-------------WM--RGHLFDYTSAVIIYEMCVQEP 285
+++T++ + GT F W G + + + +P
Sbjct: 218 IPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQP 277
Query: 286 TATVTKVRQ-QEKLKYP-PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG-FISYPR 342
ATVT+ Q Q K P PY LS ++++ A RY S++ + + + LY+ I+YPR
Sbjct: 278 -ATVTESEQDQTKQAAPLPYSLSALQIDA-AKRY-NFSAQQVLDLCQSLYEKHKLITYPR 334
Query: 343 TETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLD--HAAGLWRNPGSGGHDDK--AHPPI 398
++ H + Q AQ ++ + A L +D K AH I
Sbjct: 335 SDCRYLPKE---H-LAQAPDVVAAIANNAQEMVTAVNDADLSLR-SKAWNDSKVDAHHAI 389
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
PT + + S K+Y+L+ R +L A+ AE + NIAG +F GR +L+
Sbjct: 390 IPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLS 449
Query: 459 KNY 461
+
Sbjct: 450 AGW 452
>TIGR_CMR|VC_2043 [details] [associations]
symbol:VC_2043 "DNA topoisomerase III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006265 PROSITE:PS50880
SMART:SM00493 GO:GO:0003916 GO:GO:0003917 Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 eggNOG:COG0550 KO:K03169 ProtClustDB:PRK07726
TIGRFAMs:TIGR01056 PIR:E82126 RefSeq:NP_231677.1
ProteinModelPortal:Q9KQF5 SMR:Q9KQF5 DNASU:2613424 GeneID:2613424
KEGG:vch:VC2043 PATRIC:20083118 OMA:AANGDCV Uniprot:Q9KQF5
Length = 647
Score = 248 (92.4 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 128/483 (26%), Positives = 207/483 (42%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPS+A+++A L K + +G R G ++T GHL+E
Sbjct: 4 LFIAEKPSLARAIADALPKPH--KKEQGCIR---------CANGD----IVTWCIGHLLE 48
Query: 71 L---D-FDERYRKWHSCD-PA--DLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLD 123
D +DERY+KW+ D P + + RK + ++K L+E + ++ D
Sbjct: 49 QVEPDAYDERYKKWNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQ----IIHAGD 104
Query: 124 CDREGENIAFEVIEVCRAVNCHL-VLRRARFSALIDREIHQAVQNLVDPNQWFADAVDA- 181
DREG+ + EVI+ C+ ++R S L + +A+Q L ++ +V A
Sbjct: 105 PDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSAL 164
Query: 182 -RQEIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAH 240
R D G + +R T+L K V LS G Q P LG VV R EI+
Sbjct: 165 ARSRADWLYGMNMSRAYTLLGKKAGYQGV-------LSVGRVQTPVLGLVVRRDEEIEHF 217
Query: 241 ESEEFWTINCSHKSEEGTATFS-------------WM--RGHLFDYTSAVIIYEMCVQEP 285
+++T++ + GT F W G + + + +P
Sbjct: 218 IPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQP 277
Query: 286 TATVTKVRQ-QEKLKYP-PYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG-FISYPR 342
ATVT+ Q Q K P PY LS ++++ A RY S++ + + + LY+ I+YPR
Sbjct: 278 -ATVTESEQDQTKQAAPLPYSLSALQIDA-AKRY-NFSAQQVLDLCQSLYEKHKLITYPR 334
Query: 343 TETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLD--HAAGLWRNPGSGGHDDK--AHPPI 398
++ H + Q AQ ++ + A L +D K AH I
Sbjct: 335 SDCRYLPKE---H-LAQAPDVVAAIANNAQEMVTAVNDADLSLR-SKAWNDSKVDAHHAI 389
Query: 399 HPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGRVILA 458
PT + + S K+Y+L+ R +L A+ AE + NIAG +F GR +L+
Sbjct: 390 IPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLS 449
Query: 459 KNY 461
+
Sbjct: 450 AGW 452
>UNIPROTKB|P0A620 [details] [associations]
symbol:topA "DNA topoisomerase 1" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0060701 "negative regulation
of ribonuclease activity" evidence=IDA] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013824 InterPro:IPR013825
InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 GO:GO:0040007
GO:GO:0005618 GO:GO:0005694 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 EMBL:BX842583 GO:GO:0006265
PROSITE:PS50880 SMART:SM00493 GO:GO:0003917 KO:K03168
ProtClustDB:PRK07561 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 EMBL:U40159 PIR:G70563 RefSeq:NP_218163.1
RefSeq:NP_338295.1 RefSeq:YP_006517133.1 ProteinModelPortal:P0A620
SMR:P0A620 PhosSite:P12071734 PRIDE:P0A620
EnsemblBacteria:EBMYCT00000003850 EnsemblBacteria:EBMYCT00000070990
GeneID:13317254 GeneID:885608 GeneID:922741 KEGG:mtc:MT3749
KEGG:mtu:Rv3646c KEGG:mtv:RVBD_3646c PATRIC:18130002
TubercuList:Rv3646c eggNOG:COG1754 HOGENOM:HOG000004020 OMA:GKYGPYL
GO:GO:0060701 Uniprot:P0A620
Length = 934
Score = 227 (85.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 88/316 (27%), Positives = 144/316 (45%)
Query: 300 YPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFS-SGTNLHGIV 358
YPP+ ST++ E ASR R S+E TM +A+ LY+ G+I+Y RT++ + S S N
Sbjct: 304 YPPFMTSTLQQE--ASRKLRFSAERTMSIAQRLYENGYITYMRTDSTTLSESAINAARTQ 361
Query: 359 QEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDKAHPPIHPT--KFSSGESRWSQ---- 412
Q+ ++ A R +N +AH I P F++ ++ +
Sbjct: 362 ARQLYGDEYVAPAPRQYTRKV---KNA------QEAHEAIRPAGETFATPDAVRRELDGP 412
Query: 413 --DHYKLYELVVRHFLACVSQPAVGAETIVEIN-IAGE---VFSTSGRVILAKNYLDVYR 466
D ++LYEL+ + +A A G + I ++G VFS +GR + +L Y
Sbjct: 413 NIDDFRLYELIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYV 472
Query: 467 F---ESWGGLV------IPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIG 517
E GG +P GQ+ LT D T PP +EA L+ +++ GIG
Sbjct: 473 ETVDELVGGEADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIG 532
Query: 518 TDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGY-ELWKPNLRSMMESDM 576
+T IK + DR Y K + P+ + A V G + + L + + ME ++
Sbjct: 533 RPSTYSSIIKTIQDRGYVHKKGSA-LVPSWVAFA-VTGLLEQHFGRLVDYDFTAAMEDEL 590
Query: 577 KEVSVGNKSKADVLAN 592
E++ GN+ + + L N
Sbjct: 591 DEIAAGNERRTNWLNN 606
Score = 70 (29.7 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 33/139 (23%), Positives = 59/139 (42%)
Query: 60 LMTSVTGHLMEL-----DFDERYRK--WHSCDP-ADLYHAPVRKHVPEDKKDIKKTLEEE 111
++ S GH+ +L D +Y+ W D P+ PE + + + L
Sbjct: 41 IVESSRGHIRDLPRAASDVPAKYKSQPWARLGVNVDADFEPLYIISPEKRSTVSE-LRGL 99
Query: 112 ARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSALIDREIHQAVQNLVDP 171
+ L L D DREGE IA+ ++E + + ++R F + + I A ++ D
Sbjct: 100 LKDVDELYLATDGDREGEAIAWHLLETLKP---RIPVKRMVFHEITEPAIRAAAEHPRDL 156
Query: 172 NQWFADAVDARQEIDLRIG 190
+ DA + R+ +D G
Sbjct: 157 DIDLVDAQETRRILDRLYG 175
>UNIPROTKB|H7C4B0 [details] [associations]
symbol:TOP3B "DNA topoisomerase" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013826 InterPro:IPR023406
Pfam:PF01131 PROSITE:PS00396 GO:GO:0005694 GO:GO:0006265
GO:GO:0003917 InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
Gene3D:1.10.290.10 EMBL:D87012 HGNC:HGNC:11993
ProteinModelPortal:H7C4B0 Ensembl:ENST00000436282 Bgee:H7C4B0
Uniprot:H7C4B0
Length = 168
Score = 218 (81.8 bits), Expect = 9.0e-17, P = 9.0e-17
Identities = 52/129 (40%), Positives = 69/129 (53%)
Query: 274 AVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLY 333
A + M E A V ++EK K P L+T+E+ + AS M +H M+ AE LY
Sbjct: 2 AQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLY 61
Query: 334 QAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHDDK 393
G+ISYPRTET + +L G +++Q HP W +RLL A G+ R P G HD
Sbjct: 62 TQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLL--AEGINR-PRKG-HDAG 117
Query: 394 AHPPIHPTK 402
HPPI P K
Sbjct: 118 DHPPITPMK 126
>TIGR_CMR|DET_0717 [details] [associations]
symbol:DET_0717 "DNA topoisomerase I" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005733 InterPro:IPR013497 InterPro:IPR013498
InterPro:IPR013824 InterPro:IPR013825 InterPro:IPR023406
Pfam:PF01131 Pfam:PF01396 PRINTS:PR00417 PROSITE:PS00396
SMART:SM00436 SMART:SM00437 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0006265 SMART:SM00493 GO:GO:0003917 eggNOG:COG0551
HOGENOM:HOG000004018 KO:K03168 OMA:EFWDIHA Gene3D:1.10.460.10
Gene3D:2.70.20.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 TIGRFAMs:TIGR01051 RefSeq:YP_181458.1
ProteinModelPortal:Q3Z8J1 STRING:Q3Z8J1 GeneID:3229934
KEGG:det:DET0717 PATRIC:21608497 ProtClustDB:PRK05582
BioCyc:DETH243164:GJNF-718-MONOMER Uniprot:Q3Z8J1
Length = 703
Score = 219 (82.2 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 115/492 (23%), Positives = 207/492 (42%)
Query: 87 DLYHAPVRKHVP-EDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCH 145
D+ ++ K+V + K + K L++ + + + L D DREGE IA+ + EV +A N
Sbjct: 45 DVENSFTPKYVSLKAKAKVIKELKDAVKNSKAIYLATDPDREGEAIAWHISEVTKA-NLA 103
Query: 146 LVLRRARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFT----RFQTMLL 201
+R F + I +A +N + + +A AR+ +D +G + R L
Sbjct: 104 KP-KRVVFHEITKEAIDKAFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGL 162
Query: 202 KNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATF 261
+ SV+ +++ + FV YW I+A +++ + S G T
Sbjct: 163 SAGRVQSVS--LKIIVDR---EREIEKFVSAEYWNIEALLNKKVKSA-AFKASLAGYVTK 216
Query: 262 SWMRGHLFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMS 321
+ H + + I E+ V + V K++++ L+ P P T L++ A R S
Sbjct: 217 GKLEIHN-ESEAEQIKKELEVSD--YQVLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFS 273
Query: 322 SEHTMKVAEDLYQA---------GFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQ 372
++ TM +A+ LY+ G I+Y RT DS + ++ I +GP
Sbjct: 274 AKQTMVIAQQLYEGLNIEGEGEVGLITYMRT--DSTNVARTAVAETRDYISEK-YGP--- 327
Query: 373 RLLDHAAGLWRNPGSGGHDDKAHPPIHPTKFSSG----ESRWSQDHYKLYELVVRHFLAC 428
L A ++ + G + AH I PT+ + S + +KLY+L+ + +A
Sbjct: 328 AYLPKQARVFSSKVKGAQE--AHEAIRPTRIIRTPDLIKKSLSTEQFKLYQLIWQRMMAS 385
Query: 429 VSQPAVGAETIVEINIAGE------VFSTSGRVILAKNYLDVY-----RFESWGGLVIPT 477
PAV T ++I + + T+ V + VY E +P
Sbjct: 386 QMSPAVFDNTTIDIEAKHQPSKTRYLLRTTSSVNTFPGFTIVYIEGKDEDEEAAQSSLPP 445
Query: 478 YVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIK 537
G++ +L T+PPP +EA L+ +++ GIG +T I + +R Y K
Sbjct: 446 MEEGEELKLKSLEASQHFTQPPPRYTEATLIKALEQYGIGRPSTYAPTISTIQEREYITK 505
Query: 538 DANTRFAPTNIG 549
+ P+ +G
Sbjct: 506 LKGS-LKPSELG 516
Score = 67 (28.6 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 24/110 (21%), Positives = 45/110 (40%)
Query: 564 WKPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFF--ER 621
W P +R E +KE+ ++ K + + +++ + K V G F R
Sbjct: 553 WVPIIRRFYEPFIKEIEAASE-KIEKIKPPEEELDELCPECNAKLVVKRGRFGKFIACSR 611
Query: 622 WSGGED--QQAAGEVVRQCGICQESN--MVLKKSRDGNLMVGCLAFPQCR 667
++ E + ++ C E N +V K S+ G + GC +P C+
Sbjct: 612 YTKEEGGCRYTRSYQIKTGAKCPECNSDIVEKYSKKGKIFYGCAGYPNCK 661
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSR 41
L + E P+ A++++ +L K+ + G R
Sbjct: 5 LVIVESPAKARTISKMLGKDFNIMATMGHIR 35
>TIGR_CMR|SO_3061 [details] [associations]
symbol:SO_3061 "DNA topoisomerase III" species:211586
"Shewanella oneidensis MR-1" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 HSSP:P14294 KO:K03169
ProtClustDB:PRK07726 TIGRFAMs:TIGR01056 HOGENOM:HOG000086848
OMA:AANGDCV RefSeq:NP_718626.1 ProteinModelPortal:Q8ECS1 SMR:Q8ECS1
GeneID:1170747 KEGG:son:SO_3061 PATRIC:23525760 Uniprot:Q8ECS1
Length = 702
Score = 221 (82.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 123/470 (26%), Positives = 194/470 (41%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
+L +AEKPS+ +++A +L K ++G F G C ++ GHL+
Sbjct: 2 ILYIAEKPSLGRAIADVLPKPH----KKGEG-------FIEDANGN-C---VSWCVGHLL 46
Query: 70 ELDFDERYRK-WHSCDPADLYHAPVRKHV-PEDKKDIKKT-LEEEARRCQWLVLWLDCDR 126
E + Y + S L P + + P+ + T L++ ++ LV D DR
Sbjct: 47 EQAEPDAYNPDFKSWKFEHLPIVPEKWQLKPKAATRSQLTVLKKLIKQADTLVNAGDPDR 106
Query: 127 EGENIAFEVIEVCRAVNCHLV-LRRARFSALIDREIHQAVQNLVDPNQWF--ADAVDARQ 183
EG+ + EVI L +R S L + + +A+ L ++ + + AR
Sbjct: 107 EGQLLVDEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARS 166
Query: 184 EIDLRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESE 243
D G + TR T+ K V LS G Q P LG +V R EI +S+
Sbjct: 167 RADWLYGMNMTRAYTIQGKKVGYQGV-------LSVGRVQTPLLGLIVRRDEEIAHFQSK 219
Query: 244 EFWTINCSHKSEEGTATFS--WM-----------RGHLFDYTSAVIIYEMCVQEPTATVT 290
F+ + +H + FS W G + A + +P A VT
Sbjct: 220 PFYEV-LAHLVTDKQQFFSAKWQPSEACQPYMDDEGRVLSKGLAQNVVRRITDKP-AKVT 277
Query: 291 KVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG-FISYPRTETDSFS 349
++ ++K + P P S L+ A++ F MS++ + + LY+ I+YPR+ DS
Sbjct: 278 QLSTKDKQQSAPLPYSLSALQIDAAKRFGMSAKEVLDTCQSLYERHKLITYPRS--DSRY 335
Query: 350 SGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPG--SGGHDDK---AHPPIHPTKFS 404
T HG+ + G A L+ H+ NP S DDK AH I PT+
Sbjct: 336 LPTEQHGLASSVLNAITSG--APELVAHSEA--PNPRLKSKAWDDKKVDAHHAIIPTEKQ 391
Query: 405 SGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGR 454
SQ +LY + R +LA +ET VE+ I G +F T R
Sbjct: 392 PNLGSLSQRERQLYLHIARQYLAQFYPAYCYSETAVEVTIEGGLFKTKAR 441
Score = 50 (22.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 22/97 (22%), Positives = 43/97 (44%)
Query: 487 TTLTLDSGVTRPPPLLSEADLLSCMDKA-GIGTDATMHDHIKKLLDRFYAIKDANTRFAP 545
T TL +T +++ ++ + + G+GT+AT I+ L R + + + A
Sbjct: 512 TDATLLGAMTGINRYVTDPEIRKILKETDGLGTEATRAGIIELLFKRGFIQRQGKSIVA- 570
Query: 546 TNIGEALVMGYD------DMGYELWKPNLRSMMESDM 576
T +G+ L+ DM LW+ +L + D+
Sbjct: 571 TEVGKGLINSLPLSATTPDMT-ALWEASLNGICHKDI 606
Score = 48 (22.0 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/85 (30%), Positives = 34/85 (40%)
Query: 446 GEVFSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEA 505
GE TS A++ D E G L P + GQ L T+PP ++A
Sbjct: 457 GERKDTSNTETFAQDDKDKDEGEYAGQL--PPLILGQVLHCNQGELVEKQTQPPKAFTDA 514
Query: 506 DLLSCMDKAGIGTDATMHDHIKKLL 530
LL M GI T I+K+L
Sbjct: 515 TLLGAM--TGINRYVT-DPEIRKIL 536
>UNIPROTKB|J3QR18 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=IEA] InterPro:IPR000380 GO:GO:0005694
GO:GO:0006265 EMBL:AC127537 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 HGNC:HGNC:11992
ProteinModelPortal:J3QR18 Ensembl:ENST00000461127 Uniprot:J3QR18
Length = 139
Score = 188 (71.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ M+MTSV+GHL+
Sbjct: 36 VLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 94
Query: 70 ELDFDERYRKW 80
DF ++RKW
Sbjct: 95 AHDFQMQFRKW 105
>TIGR_CMR|NSE_0594 [details] [associations]
symbol:NSE_0594 "DNA topoisomerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0006268 "DNA
unwinding involved in replication" evidence=ISS] InterPro:IPR000380
InterPro:IPR003601 InterPro:IPR003602 InterPro:IPR005733
InterPro:IPR013497 InterPro:IPR013498 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 Pfam:PF01396
PRINTS:PR00417 PROSITE:PS00396 SMART:SM00436 SMART:SM00437
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0006265 SMART:SM00493
GO:GO:0003917 KO:K03168 Gene3D:1.10.460.10 Gene3D:2.70.20.10
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712
TIGRFAMs:TIGR01051 eggNOG:COG1754 HOGENOM:HOG000004020
RefSeq:YP_506474.1 ProteinModelPortal:Q2GDH2 STRING:Q2GDH2
GeneID:3931799 KEGG:nse:NSE_0594 PATRIC:22681227 OMA:SQFARRI
ProtClustDB:PRK06599 BioCyc:NSEN222891:GHFU-610-MONOMER
Uniprot:Q2GDH2
Length = 827
Score = 222 (83.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 148/606 (24%), Positives = 250/606 (41%)
Query: 97 VPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRARFSAL 156
VP+ KD+KK L L D DREGE I++ ++EV + + VL + +
Sbjct: 62 VPQLIKDVKKATA--------LYLATDPDREGEAISWHLVEVFKEND---VLPKDVHRVV 110
Query: 157 IDREIHQAVQNLV-DPNQWFADAVDA---RQEIDLRIGASFTRFQTMLLKNFH-IDSVTD 211
AVQN + P + + V A RQ +D +G S + +L K S
Sbjct: 111 FHEITKTAVQNAIASPRKIDENLVRAQRLRQALDYLVGFSIS---PVLWKKLPGSKSAGR 167
Query: 212 DRNLVLSYGPCQFPTLG-FVVERYWEIQAHESE-EFWTI--NCSHKSEEGTATFSWMRGH 267
+++ L + +G F E YW + + ++ E + SH + E S R
Sbjct: 168 VQSVALRILCDRENEIGLFTPEEYWTVTVNMTDGEALVLPTQLSHMNGEKLERMSIRRAE 227
Query: 268 LFDYTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMK 327
+ I+ E + V +++++E + P P T +++ AS S + TM
Sbjct: 228 ----EAEKIVEE--ISGLPFLVEEIKKKELKQKPSPPFITSTMQQTASTILGFSVKKTMS 281
Query: 328 VAEDLYQA--------GFISYPRTETDSFS--SGTNLHGIVQEQIGHPDWGPYAQRLLDH 377
+A+ LY+ G I+Y RT+ S S + +QE+ G Q L
Sbjct: 282 LAQKLYEGIEIGGVIEGLITYMRTDATHLSVESVDAIREFIQEKFG--------QEYLPA 333
Query: 378 AAGLWRNPGSGGHDDKAHPPIHPTK-FSSGE---SRWSQDHYKLYELVVRHFLACVSQPA 433
+ L++ + AH I PT F + E S + D YKLY L+ LAC A
Sbjct: 334 SPVLFKKKVKNAQE--AHEAIRPTSIFRTPEEIESYLTPDQYKLYRLIWERALACQMSDA 391
Query: 434 V-GAETIVEINIAGEVFSTSGRVILAKNYLDVYRFE-SWG-------GLV--IPTYVHGQ 482
+ ++ IV ++ + F TS L D + S G ++ I + G
Sbjct: 392 ITSSQNIVFVS-QDKKFKTSASASLL--IFDGFNAAFSHGKNKNKNQDVIDFIKKHKEGA 448
Query: 483 QFIPTTLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDANTR 542
Q + L T PP SEA L+ +++ GIG +T + L +R YA N
Sbjct: 449 QVKVGDVLLTQNFTEPPHRYSEAGLVKHLEELGIGRPSTYATVVSVLQERGYA-SIVNKS 507
Query: 543 FAPTNIGEALVMGYDDMGYELW-KPNLRSMMESDMKEVSVGNKSKADVLANCLQQMKACF 601
F P + G LV + + + + + + +E + +V+ G DV+ + +
Sbjct: 508 FIPESRGR-LVSEFLVHFFSKYVEYHFTAELEDRLDKVADGTIFWLDVIQDFWDSFHSNV 566
Query: 602 LDARLKKVKLLEAMGIFFERWSGGEDQQAAGEVVRQCGICQESNMVLKKSRDGNLMVGCL 661
+ ++KV + E + + + A +V +C C++ M L SR G + +GC
Sbjct: 567 EE--VEKVPITEVLAFVNGALARQKLVSAEVKVGDKCPKCEKGYMHLNVSRYG-VFLGCT 623
Query: 662 AFPQCR 667
+P CR
Sbjct: 624 DYPVCR 629
Score = 40 (19.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 8 INVLNVAEKPSVAKSVAGILSKN 30
+NVL + E P+ K++A L K+
Sbjct: 1 MNVL-IVESPTKGKAIAQYLGKD 22
>UNIPROTKB|K7ELI7 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
InterPro:IPR013497 InterPro:IPR013824 Pfam:PF01131 EMBL:AC127537
Gene3D:1.10.460.10 InterPro:IPR023405 PANTHER:PTHR11390
SUPFAM:SSF56712 HGNC:HGNC:11992 Ensembl:ENST00000582122
Uniprot:K7ELI7
Length = 133
Score = 181 (68.8 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 449 FSTSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLL 508
F G +ILA+NYLDVY ++ W ++P Y G F P+T+ + G T PP LL+EADL+
Sbjct: 1 FVAHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLI 60
Query: 509 SCMDKAGIG 517
+ M+K GIG
Sbjct: 61 ALMEKHGIG 69
>TIGR_CMR|CPS_4792 [details] [associations]
symbol:CPS_4792 "DNA topoisomerase III" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
InterPro:IPR000380 InterPro:IPR003601 InterPro:IPR003602
InterPro:IPR005738 InterPro:IPR013497 InterPro:IPR013824
InterPro:IPR013825 InterPro:IPR023406 Pfam:PF01131 PRINTS:PR00417
PROSITE:PS00396 SMART:SM00436 SMART:SM00437 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006265 SMART:SM00493 GO:GO:0003917
Gene3D:1.10.460.10 Gene3D:2.70.20.10 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 eggNOG:COG0550 OMA:GNKERDE
KO:K03169 ProtClustDB:PRK07726 TIGRFAMs:TIGR01056
HOGENOM:HOG000086848 RefSeq:YP_271431.1 ProteinModelPortal:Q47UU1
SMR:Q47UU1 STRING:Q47UU1 GeneID:3522462 KEGG:cps:CPS_4792
PATRIC:21472403 BioCyc:CPSY167879:GI48-4793-MONOMER Uniprot:Q47UU1
Length = 649
Score = 174 (66.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 107/468 (22%), Positives = 181/468 (38%)
Query: 11 LNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLME 70
L +AEKPS+ +++A L K Q ++ I N G + +
Sbjct: 3 LYIAEKPSLGRAIAAALPKPQ-------KNHKTHIELAN----GDVVSWCIGHILAQADP 51
Query: 71 LDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGEN 130
D+D +KW + K + + + L + ++ ++ D DREG+
Sbjct: 52 EDYDAELKKWRMESLPIVPQQWQLKPIARTRSQLT-VLRKLVKQADEIIHAGDPDREGQL 110
Query: 131 IAFEVIEVCRAVNCHLV-LRRARFSALIDREIHQAVQNLVDPNQWFAD-AVDA--RQEID 186
+ EVI+ + ++R S L + +A+ +L PN F ++ A R D
Sbjct: 111 LVDEVIDYFKLSKTKKANIKRLLISDLNLPAVKRALTSL-KPNSDFMPLSISALARSRAD 169
Query: 187 LRIGASFTRFQTMLLKNFHIDSVTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFW 246
G + TR T+ N VLS G Q P LG VV R EI S+ F+
Sbjct: 170 WLYGINLTRAYTL-------QGQKTGYNSVLSVGRVQTPLLGLVVRREQEISEFVSKPFF 222
Query: 247 TINC--SHKSEEGTA-TFSWMRGH----LFDYTSAVIIYEMC------VQEPTATVTKVR 293
+ + S++ A T W D V++ + + AT++ +
Sbjct: 223 QVQAHIALSSKDAVAFTAKWQPSENCQPYCDEEGRVLVKALAENVVKRIANQPATISNID 282
Query: 294 QQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAEDLYQAG-FISYPRTETDSFSSGT 352
EK + P P + +L+ A++ F M+++ + V + LY+ I+YPR++
Sbjct: 283 SNEKQQAAPLPFNLSQLQISAAKQFSMNAKLVLDVCQALYERHKLITYPRSDCRYLPKEQ 342
Query: 353 --NLHGIVQEQIGH--PDWGPYAQRLLDHAAGLWRNPGSGGHDDK--AHPPIHPTKFSSG 406
GIV P P + W +D K AH I PT+ S
Sbjct: 343 LKQASGIVNTLANSSLPCNKPAQGANTSFVSKAW-------NDKKITAHHAIIPTEKSPE 395
Query: 407 ESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFSTSGR 454
+ +Y L+VR +L + +T VE+ IAG F + +
Sbjct: 396 NINLNTFEKNVYLLIVRQYLVQFYPAYIFQQTKVELLIAGGNFMSQAK 443
Score = 58 (25.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 482 QQFIPTTLT-LDSGVTRPPPLLSEADLLSCMDKA-GIGTDATMHDHIKKLLDRFYAIKDA 539
Q F TL +G++R +++A + + + G+GTDAT I L R + +
Sbjct: 501 QSFTDATLLGAMTGISR---YVNDAAIKKVLKETDGLGTDATRAGIIDLLFKRGFLQRQG 557
Query: 540 NTRFAPTNIGEALVMGYDDMGYELWKPNLRSMMESDMKEVSVGN 583
A T +G AL+ M P++ + E+ + +S N
Sbjct: 558 KAITA-TKVGVALITALPTMAT---LPDMTAQWEATLTAISEKN 597
>UNIPROTKB|D4A4A6 [details] [associations]
symbol:D4A4A6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
GO:GO:0005694 GO:GO:0006265 GO:GO:0003917 InterPro:IPR023405
PANTHER:PTHR11390 SUPFAM:SSF56712 IPI:IPI00778588
ProteinModelPortal:D4A4A6 Ensembl:ENSRNOT00000057981
ArrayExpress:D4A4A6 Uniprot:D4A4A6
Length = 85
Score = 134 (52.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 59 MLMTSVTGHLMELDFDERYRKWHSCDPADLYHAPVRKHVPEDKKDIK 105
M+MTSV+GHL+ DF ++RKW SC+P L+ A + K+ PE+ DIK
Sbjct: 39 MIMTSVSGHLLAHDFQMQFRKWSSCNPLVLFEAEIEKYCPENFIDIK 85
Score = 47 (21.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQ 31
VL VAEK AK +A +LS +
Sbjct: 11 VLCVAEKNDAAKGIADLLSNGR 32
>UNIPROTKB|J3QS25 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
GO:GO:0005694 GO:GO:0006265 EMBL:AC127537 GO:GO:0003917
PANTHER:PTHR11390 HGNC:HGNC:11992 ProteinModelPortal:J3QS25
Ensembl:ENST00000585031 Uniprot:J3QS25
Length = 95
Score = 122 (48.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLM 69
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ ++ M V H +
Sbjct: 36 VLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQ--NVTMAGVQWHNL 92
Query: 70 E 70
+
Sbjct: 93 D 93
>UNIPROTKB|J3KS96 [details] [associations]
symbol:TOP3A "DNA topoisomerase 3-alpha" species:9606 "Homo
sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR000380
GO:GO:0005694 GO:GO:0006265 EMBL:AC127537 GO:GO:0003917
PANTHER:PTHR11390 HGNC:HGNC:11992 ProteinModelPortal:J3KS96
Ensembl:ENST00000582981 Uniprot:J3KS96
Length = 89
Score = 117 (46.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQ 55
VL VAEK AK +A +LS N +R REG S++NKIYEF+Y + GQ
Sbjct: 36 VLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQ 80
>UNIPROTKB|C9J9X4 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 IPI:IPI00879706 ProteinModelPortal:C9J9X4
SMR:C9J9X4 STRING:C9J9X4 Ensembl:ENST00000456075
ArrayExpress:C9J9X4 Bgee:C9J9X4 Uniprot:C9J9X4
Length = 61
Score = 112 (44.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHL 68
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH+
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHV 61
>UNIPROTKB|C9JEQ1 [details] [associations]
symbol:TOP3B "DNA topoisomerase 3-beta-1" species:9606
"Homo sapiens" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] InterPro:IPR000380
GO:GO:0007059 GO:GO:0000793 GO:GO:0006265 GO:GO:0003917
InterPro:IPR023405 PANTHER:PTHR11390 SUPFAM:SSF56712 EMBL:D87012
HGNC:HGNC:11993 IPI:IPI00880050 ProteinModelPortal:C9JEQ1
SMR:C9JEQ1 STRING:C9JEQ1 Ensembl:ENST00000449704
ArrayExpress:C9JEQ1 Bgee:C9JEQ1 Uniprot:C9JEQ1
Length = 60
Score = 111 (44.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 10 VLNVAEKPSVAKSVAGILSKNQGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGH 67
VL VAEKPS+A+S+A ILS+ L +G + ++E+ + GQP MTSV GH
Sbjct: 4 VLMVAEKPSLAQSIAKILSRGS-LSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH 60
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 807 807 0.00098 121 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 69
No. of states in DFA: 628 (67 KB)
Total size of DFA: 467 KB (2219 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.56u 0.08s 67.64t Elapsed: 00:00:04
Total cpu time: 67.59u 0.08s 67.67t Elapsed: 00:00:04
Start: Fri May 10 10:43:50 2013 End: Fri May 10 10:43:54 2013